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Conserved domains on  [gi|1315008911|ref|XP_023158195|]
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uncharacterized protein LOC100273715 isoform X1 [Zea mays]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10475 super family cl35922
23S rRNA pseudouridine(2604) synthase RluF;
227-279 1.12e-03

23S rRNA pseudouridine(2604) synthase RluF;


The actual alignment was detected with superfamily member PRK10475:

Pssm-ID: 236698 [Multi-domain]  Cd Length: 290  Bit Score: 39.71  E-value: 1.12e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1315008911 227 LNNNEDEGQPKAKTKRK---AEKTTGKAPKKAKVAGKGPKKGTRKTQPakrGRKAK 279
Cdd:PRK10475  236 IENSSSEAKPKAKAKPKtagIKRPVVKMEKTAEKGGRPASNGKRFTSP---GRKKK 288
 
Name Accession Description Interval E-value
PRK10475 PRK10475
23S rRNA pseudouridine(2604) synthase RluF;
227-279 1.12e-03

23S rRNA pseudouridine(2604) synthase RluF;


Pssm-ID: 236698 [Multi-domain]  Cd Length: 290  Bit Score: 39.71  E-value: 1.12e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1315008911 227 LNNNEDEGQPKAKTKRK---AEKTTGKAPKKAKVAGKGPKKGTRKTQPakrGRKAK 279
Cdd:PRK10475  236 IENSSSEAKPKAKAKPKtagIKRPVVKMEKTAEKGGRPASNGKRFTSP---GRKKK 288
COG1754 COG1754
Uncharacterized C-terminal domain of topoisomerase IA [Function unknown];
237-280 8.58e-03

Uncharacterized C-terminal domain of topoisomerase IA [Function unknown];


Pssm-ID: 441360 [Multi-domain]  Cd Length: 892  Bit Score: 37.49  E-value: 8.58e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1315008911 237 KAKTKRKAEKTTGKAPKKAKVAGK--GPKKGTRKTQPAKrgRKAKK 280
Cdd:COG1754   848 PAKKKKAAKKAAAKKAAAKKTAAKkaAAKKAAAKKAAAK--KAAKK 891
 
Name Accession Description Interval E-value
PRK10475 PRK10475
23S rRNA pseudouridine(2604) synthase RluF;
227-279 1.12e-03

23S rRNA pseudouridine(2604) synthase RluF;


Pssm-ID: 236698 [Multi-domain]  Cd Length: 290  Bit Score: 39.71  E-value: 1.12e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1315008911 227 LNNNEDEGQPKAKTKRK---AEKTTGKAPKKAKVAGKGPKKGTRKTQPakrGRKAK 279
Cdd:PRK10475  236 IENSSSEAKPKAKAKPKtagIKRPVVKMEKTAEKGGRPASNGKRFTSP---GRKKK 288
COG1754 COG1754
Uncharacterized C-terminal domain of topoisomerase IA [Function unknown];
237-280 8.58e-03

Uncharacterized C-terminal domain of topoisomerase IA [Function unknown];


Pssm-ID: 441360 [Multi-domain]  Cd Length: 892  Bit Score: 37.49  E-value: 8.58e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1315008911 237 KAKTKRKAEKTTGKAPKKAKVAGK--GPKKGTRKTQPAKrgRKAKK 280
Cdd:COG1754   848 PAKKKKAAKKAAAKKAAAKKTAAKkaAAKKAAAKKAAAK--KAAKK 891
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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