NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1370484970|ref|XP_024309486|]
View 

CUB domain-containing protein 1 isoform X3 [Homo sapiens]

Protein Classification

CUB domain-containing protein( domain architecture ID 1781)

CUB (complement C1r/C1s, Uegf, Bmp1) domain-containing protein

PubMed:  8510165

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CUB super family cl00049
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 159-231 1.49e-03

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


The actual alignment was detected with superfamily member cd00041:

Pssm-ID: 412131 [Multi-domain]  Cd Length: 113  Bit Score: 38.93  E-value: 1.49e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1370484970 159 SVFEGEGSATLMSANYPEGFPEDELMTWQFVVPAHLRASVSFLNFNL---SNCERkeERVEYYIPGSTTNPEVFKL 231
Cdd:cd00041     3 GTLTASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLessPNCSY--DYLEIYDGPSTSSPLLGRF 76
 
Name Accession Description Interval E-value
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 159-231 1.49e-03

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 38.93  E-value: 1.49e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1370484970 159 SVFEGEGSATLMSANYPEGFPEDELMTWQFVVPAHLRASVSFLNFNL---SNCERkeERVEYYIPGSTTNPEVFKL 231
Cdd:cd00041     3 GTLTASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLessPNCSY--DYLEIYDGPSTSSPLLGRF 76
 
Name Accession Description Interval E-value
CUB cd00041
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 159-231 1.49e-03

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


Pssm-ID: 238001 [Multi-domain]  Cd Length: 113  Bit Score: 38.93  E-value: 1.49e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1370484970 159 SVFEGEGSATLMSANYPEGFPEDELMTWQFVVPAHLRASVSFLNFNL---SNCERkeERVEYYIPGSTTNPEVFKL 231
Cdd:cd00041     3 GTLTASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLessPNCSY--DYLEIYDGPSTSSPLLGRF 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH