|
Name |
Accession |
Description |
Interval |
E-value |
| FPP |
pfam05911 |
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant ... |
107-951 |
9.44e-138 |
|
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant proteins that are filament-like. It interacts with the nuclear envelope-associated protein, MAF1, the WPP family pfam13943.
Pssm-ID: 461778 [Multi-domain] Cd Length: 859 Bit Score: 438.73 E-value: 9.44e-138
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 107 KDNVVKQHVKVAEEAVSGWEKAESEAVSLKAQLDAALQQKLATEDRVAHLDGALKECMKQLRHLREENEQRVHDTLLKKT 186
Cdd:pfam05911 1 KDDLVKQHAKVAEEAVSGWEKAEAEALALKQQLESVTLQKLTAEERAAHLDGALKECMQQLRNVKEEQEQKIHDVVLKKT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 187 REYEKLRLEMEARLADSSHflaqsrsELLEARAEVTALGHALQERSRSVAEISEAKGRAETEIKVLQVRLETLEKENSQL 266
Cdd:pfam05911 81 KEWEKIKAELEAKLVETEQ-------ELLRAAAENDALSRSLQERENLLMKLSEEKSQAEAEIEALKSRLESCEKEINSL 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 267 KYEVHVLNKELDIRSQEREYERKAVDMASKQHLESVKKIAKLEEECNRLRLLVRKKLPGPGAIQRMRMEVEGVARDPADR 346
Cdd:pfam05911 154 KYELHVLSKELEIRNEEKNMSRRSADAAHKQHLESVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKLEVEMLGRDSGET 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 347 RRRSMSRSGSQlDLLAVNGAMQDDGQDGRTQEAQMLAERVVAMDEEMKMLKEALAQRNGELHSARLLCSKTSTQLSAVEE 426
Cdd:pfam05911 234 RLRRSPVKNSS-PHLSPDPDFSEDSLQTPHKENEFLTERLLAMEEETKMLKEALAKRNSELQASRNMCAKTASKLSQLEA 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 427 EL----------KIAKEQSEASKN-----------------SNSQASNFSQELTSRKSGSLFEKPkeSVKARDSQNFELM 479
Cdd:pfam05911 313 QLeelnqgqvsmELASSQNPASNPpsltsmsedgsddevscAESWASALISELEHFKKEKPKTKS--SCKSVGNSDLELM 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 480 DDFAEMERLAMSVTLTEPQSAMSI-----TPNKLVKDLEEALASR-ARELDAKSQDLRVADQMCQELRAKLKEADKELAA 553
Cdd:pfam05911 391 DDFLEMEKLACLSNDKPSNGSHSSskssnNKKGEESDSEKDSSEStGKELVPVSSKDISLGKSLSWLQSRISVILESHVT 470
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 554 LRSQKATNEASMVSLQEQLDLLSQrerrrsgsQSKRLCaytlKDIVGKAKFNDDARTTSEASSFEGVMFDEQSSISDAES 633
Cdd:pfam05911 471 QKSIGKILEDIRCALQDINDSLPE--------ADSCLS----SGHPSTDASCDYITCKENSSVVEKEGSVSGDDKSSEET 538
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 634 KASTAYLELSIALRKIVHVVEMLAQttgyeytPSLRGVSKSTtneislqldwKNHDLNVIMRNLANVSNKLLRGKSDVID 713
Cdd:pfam05911 539 SKQSIQQDLSKAISKIIDFVEGLSK-------EALDDQDTSS----------DSSELSEVLQQFSATCNDVLSGKADLED 601
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 714 FLVEVGIVLEYILALK-PLRSISGERTEISR-----ESTNKDPKLMRDQGA----------------------------- 758
Cdd:pfam05911 602 FVLELSHILDWISNHCfSLLDVSSMEDEIKKhdcidKVTLSENKVAQVDNGcseidnlssdpeipsdgplvsgsndlkte 681
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 759 ---NLNAELDRLRLEKADISSQLDKAVEQVESLKMQLQADKQLLTRECLQRQhggdfSILKSKEddMIEEELMSLSHSNP 835
Cdd:pfam05911 682 enkRLKEEFEQLKSEKENLEVELASCTENLESTKSQLQESEQLIAELRSELA-----SLKESNS--LAETQLKCMAESYE 754
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 836 A----FRDLSGELTRLRDRVVDLERELRGEVQRNQSVVAKLGNVQHPVKRegnAVSREMSvgshgdssshSTSEEDEDTK 911
Cdd:pfam05911 755 DletrLTELEAELNELRQKFEALEVELEEEKNCHEELEAKCLELQEQLER---NEKKESS----------NCDADQEDKK 821
|
890 900 910 920
....*....|....*....|....*....|....*....|
gi 1373971148 912 svkllishsIKHEHERDAQAAALAECQRTILALGKHIKGL 951
Cdd:pfam05911 822 ---------LQQEKEITAASEKLAECQETILNLGKQLKAL 852
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
84-583 |
4.80e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.27 E-value: 4.80e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 84 LQSEER---AKILSEKLSNALADINSKDNVVKQHVKVAEEAVSGWEKAESEAVSLKAQLDAALQQKLATEDRVAHLDGAL 160
Cdd:COG1196 218 LKEELKeleAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 161 KECMKQLRHLREENEQ---------RVHDTLLKKTREYEKLRLEMEARLADSSHFLAQSRSELLEARAEVTALGHALQER 231
Cdd:COG1196 298 ARLEQDIARLEERRREleerleeleEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 232 SRSVAEISEAKGRAETEIKVLQVRLETLEKENSQLKYEVHVLNKELDIRSQEREYERKAVDMASKQHLESVKKIAKLEEE 311
Cdd:COG1196 378 EEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 312 CNRLRLLVRKKlpgpgaiqrmRMEVEGVARDPADRRRRSMSRSGSQLDLLAVNGAMQDDGQDGRTQEAQMLAERVVAMDE 391
Cdd:COG1196 458 EEALLELLAEL----------LEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVA 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 392 EMKMLKEALAQRNGELHSARLlcsktstqLSAVEEELKIAKEQSEASKNSNSQASNFSQELTSRKSGSLFEKPKESVKAR 471
Cdd:COG1196 528 VLIGVEAAYEAALEAALAAAL--------QNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGA 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 472 DSQNFELMDDFAEMERLAMSVTL------TEPQSAMSITPNKLVKDLEEALASRARELDAKSQDLRVADQMCQELRAKLK 545
Cdd:COG1196 600 AVDLVASDLREADARYYVLGDTLlgrtlvAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEA 679
|
490 500 510
....*....|....*....|....*....|....*...
gi 1373971148 546 EADKELAALRSQKATNEASMVSLQEQLDLLSQRERRRS 583
Cdd:COG1196 680 ELEELAERLAEEELELEEALLAEEEEERELAEAEEERL 717
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
87-316 |
1.55e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.30 E-value: 1.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 87 EERAKILSEKLSNALADINSKDNVVKQHVKVAEEAVSGWEKAESEAVSLKAQLDAALQQKLATEDRVAHLDGALKECMKQ 166
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE 762
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 167 LRHLREENEQrvhdtLLKKTREYEKLRLEMEARLADSSHFLAQSRSELLEARAEVTALG---HALQER----SRSVAEIS 239
Cdd:TIGR02168 763 IEELEERLEE-----AEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNeeaANLRERleslERRIAATE 837
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1373971148 240 EAKGRAETEIKVLQVRLETLEKENSQLKYEVHVLNKELDIRSQEREYERKAVDMASKQHLESVKKIAKLEEECNRLR 316
Cdd:TIGR02168 838 RRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELR 914
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
134-472 |
2.56e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.33 E-value: 2.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 134 SLKAQLDAALQ-QKLATEDRVAHLDGALKEcmkqLRHLREEneqrvhdtLLKKTREYEKLRLEMEARLADsshfLAQSRS 212
Cdd:COG1196 204 PLERQAEKAERyRELKEELKELEAELLLLK----LRELEAE--------LEELEAELEELEAELEELEAE----LAELEA 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 213 ELLEARAEVTALGHALQERSRSVAEISEAKGRAETEIKVLQVRLETLEKENSQLKYEVHVLNKELDIRSQEREYERKAVD 292
Cdd:COG1196 268 ELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 293 MASKQHLESVKKIAKLEEEcnRLRLLvrkklpgpgaiQRMRMEVEGVARDPADRRRRSMSRSGSQLDLLAVNGAMQDDGQ 372
Cdd:COG1196 348 EAEEELEEAEAELAEAEEA--LLEAE-----------AELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLE 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 373 DGRTQEAQMLAERVVAMDEEMKMLKEALAQRNGELHSARLLCSKTSTQLSAVEEELKIAKEQSEASKNSNSQASNFSQEL 452
Cdd:COG1196 415 RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL 494
|
330 340
....*....|....*....|
gi 1373971148 453 TSRKSGSLFEKPKESVKARD 472
Cdd:COG1196 495 LLLEAEADYEGFLEGVKAAL 514
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
69-550 |
4.52e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 4.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 69 QDRNRMAVDEVKAHWLQSEERAKILSEKLSNALADINSKDNVVKQHVKVAEEAVSGWEKAESEAVSLKAQLDAALQQKLA 148
Cdd:COG1196 318 LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 149 TEDRVAHLDGALKECMKQLRHLREENEQrvhdtLLKKTREYEKLRLEMEARLADSSHFLAQSRSELLEARAEVTALGHAL 228
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEELEE-----LEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 229 QERSRSVAEISEAKGRAETEIKVLQVRLETLEKENSQLKYEVHVLNKEL------DIRSQEREYERKAVDMASKQHLESV 302
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGlagavaVLIGVEAAYEAALEAALAAALQNIV 552
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 303 KKIAKLEEEC------------NRLRLLVRKKLPGPGAIQRMRMEVEGVARDPADRRRRSMSRSGSQLDLLAVNGAMQDD 370
Cdd:COG1196 553 VEDDEVAAAAieylkaakagraTFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARL 632
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 371 GQDGRTQEAQMLAERVV--AMDEEMKMLKEALAQRNGELHSARLLCSKTSTQLSAVEEELKIAKEQSEASKNSNSQASNF 448
Cdd:COG1196 633 EAALRRAVTLAGRLREVtlEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEA 712
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 449 SQELTSRKSGSLFEKPKESVKARDSQNFELMDDFAEMERLAMSVTLTEPQSAMSITPNKLVKDLE-------------EA 515
Cdd:COG1196 713 EEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEalgpvnllaieeyEE 792
|
490 500 510
....*....|....*....|....*....|....*
gi 1373971148 516 LASRARELDAKSQDLRVADqmcQELRAKLKEADKE 550
Cdd:COG1196 793 LEERYDFLSEQREDLEEAR---ETLEEAIEEIDRE 824
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
111-555 |
3.12e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.31 E-value: 3.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 111 VKQHVKVAEEAVSGWEKAESEAVSLKAQLDAALQQKLATEDRVAHLDGALK-----ECMKQLRHLREENEQRVhDTLLKK 185
Cdd:COG4717 76 LEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQllplyQELEALEAELAELPERL-EELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 186 TREYEKLRLEMEARLADsshfLAQSRSELLEARAEVTALGH-ALQERSRSVAEISEAKGRAETEIKVLQVRLETLEKENS 264
Cdd:COG4717 155 LEELRELEEELEELEAE----LAELQEELEELLEQLSLATEeELQDLAEELEELQQRLAELEEELEEAQEELEELEEELE 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 265 QLKYEVHVLNKELDIRSQEREY----ERKAVDMASKQHLESVKKIAKLeeecnrLRLLVRKKLPGPGAIQRMRMEVEGVA 340
Cdd:COG4717 231 QLENELEAAALEERLKEARLLLliaaALLALLGLGGSLLSLILTIAGV------LFLVLGLLALLFLLLAREKASLGKEA 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 341 RDPADRRRRSMSRSGSQLDLLAVNGaMQDDGQDGRTQEAQMLAERVVAMDEEMKMLKEALAQRNGELHSARLLCSKTSTQ 420
Cdd:COG4717 305 EELQALPALEELEEEELEELLAALG-LPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVED 383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 421 LSAVEEELKIAKEQSEASKnsnsQASNFSQELTsrksgslfEKPKESVKARDSQNFELMDdfAEMERLAMSVTLTEPQsa 500
Cdd:COG4717 384 EEELRAALEQAEEYQELKE----ELEELEEQLE--------ELLGELEELLEALDEEELE--EELEELEEELEELEEE-- 447
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 1373971148 501 msitpnklVKDLEEALASRARELDA--KSQDLRVADQMCQELRAKLKEADKELAALR 555
Cdd:COG4717 448 --------LEELREELAELEAELEQleEDGELAELLQELEELKAELRELAEEWAALK 496
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
144-470 |
3.13e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.60 E-value: 3.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 144 QQKLA-TEDRVAHLDGALKECMKQLRHLREENEQ---------------------RVH------DTLLKKTREYEKLRLE 195
Cdd:TIGR02168 178 ERKLErTRENLDRLEDILNELERQLKSLERQAEKaerykelkaelrelelallvlRLEelreelEELQEELKEAEEELEE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 196 MEARLADSSHFLAQSRSELLEARAEVTALGHALQERS-------RSVAEISEAKGRAETEIKVLQVRLETLEKENSQLKY 268
Cdd:TIGR02168 258 LTAELQELEEKLEELRLEVSELEEEIEELQKELYALAneisrleQQKQILRERLANLERQLEELEAQLEELESKLDELAE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 269 EVHVLNKELDIRSQEREYERKAVDMASKQHLESVKKIAKLEEECNRLRllvrkklpgpGAIQRMRMEVEgvardpadrrr 348
Cdd:TIGR02168 338 ELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLR----------SKVAQLELQIA----------- 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 349 rsmsRSGSQLDLLAVNGAMQDDGQDGRTQEAQMLAERVVamDEEMKMLKEALAQRNGELHsarllcsKTSTQLSAVEEEL 428
Cdd:TIGR02168 397 ----SLNNEIERLEARLERLEDRRERLQQEIEELLKKLE--EAELKELQAELEELEEELE-------ELQEELERLEEAL 463
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 1373971148 429 KIAKEQSEASKNSNSQASNFSQELTSRKSG-----SLFEKPKESVKA 470
Cdd:TIGR02168 464 EELREELEEAEQALDAAERELAQLQARLDSlerlqENLEGFSEGVKA 510
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
246-572 |
8.08e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 8.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 246 ETEIKVLQVRLETLEKENSQLKYEVHVLNKELDIRSQEREYERKAVDMASKQHLESVKKIAKLEEECNRLRLLVRKklpg 325
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ---- 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 326 pgaIQRMRMEVEgvardpadrrrRSMSRSGSQLDLLAVNGAMQDDGQDGRTQEAQMLAERVVAMDEEMKMLKEALAQRNG 405
Cdd:TIGR02168 752 ---LSKELTELE-----------AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNE 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 406 ELHSARLLCSKTSTQLSAVEEELKIAKEQSEasknsnsqasnfsqeltsrksgslfeKPKESVKARDSQNFELMDDFAEM 485
Cdd:TIGR02168 818 EAANLRERLESLERRIAATERRLEDLEEQIE--------------------------ELSEDIESLAAEIEELEELIEEL 871
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 486 ERLAMSVTltepqsamsitpnKLVKDLEEALASRARELDAKSQDLRVADQMCQELRAKLKEADKELAALRSQKATNEASM 565
Cdd:TIGR02168 872 ESELEALL-------------NERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRI 938
|
....*..
gi 1373971148 566 VSLQEQL 572
Cdd:TIGR02168 939 DNLQERL 945
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
136-316 |
2.26e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 2.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 136 KAQLDAALQQKLATEDRVAHLDGALKECMKQLRHLREEneQRVHDTLLKKT----------REYEKLRLEMEaRLADSSH 205
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQER--REALQRLAEYSwdeidvasaeREIAELEAELE-RLDASSD 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 206 FLAQSRSELLEARAEVTALGHALQERSRSVAEISEAKGRAETEIKVLQVRLETLEKENSQlkyevhVLNKELDIRSQE-- 283
Cdd:COG4913 686 DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARL------ELRALLEERFAAal 759
|
170 180 190
....*....|....*....|....*....|....
gi 1373971148 284 -REYERKAVDMASKQHLESVKKIAKLEEECNRLR 316
Cdd:COG4913 760 gDAVERELRENLEERIDALRARLNRAEEELERAM 793
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
70-443 |
2.28e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 2.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 70 DRNRMAVDEVKAHW--LQSE----ERAKILSEKLsnaladinsKDNVVKQHVKVAEEAVSGWEKAESEAVSLKAQLDAAL 143
Cdd:TIGR02169 187 ERLDLIIDEKRQQLerLRRErekaERYQALLKEK---------REYEGYELLKEKEALERQKEAIERQLASLEEELEKLT 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 144 QQKLATEDRVAHLDGALKECMKQLRHLREENEQRVHDTLLKKTREYEKLR---LEMEARLADSSHFLAQSRSELLEARAE 220
Cdd:TIGR02169 258 EEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLErsiAEKERELEDAEERLAKLEAEIDKLLAE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 221 VTALGHALQERSRSVAEISEAKGRAETEIKVLQVRLETLEKENSQLKYEVHVLNKELDIRSQEREyerkavdmaskqhlE 300
Cdd:TIGR02169 338 IEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREIN--------------E 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 301 SVKKIAKLEEECNRLRllvrkklpgpGAIQRMRMEVEGVARdpadrrrrsmsrsgsqlDLLAVNGAMQDDGQDGRTQE-- 378
Cdd:TIGR02169 404 LKRELDRLQEELQRLS----------EELADLNAAIAGIEA-----------------KINELEEEKEDKALEIKKQEwk 456
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1373971148 379 AQMLAERVVAMDEEMKMLKEALAQRNGELHSARLLCSKTSTQLSAVEEELKIAKEQSEASKNSNS 443
Cdd:TIGR02169 457 LEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQ 521
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
126-267 |
3.82e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 3.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 126 EKAESEAVSLKAQLDAALQQKLATEDRVAHLDGALKECMKQLR--------HLREENEQrvhdtLLKKTREYEKLRLEME 197
Cdd:COG4913 291 ELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRgnggdrleQLEREIER-----LERELEERERRRARLE 365
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 198 ARLADSSHFLAQSRSELLEARAEVTALGHALQERSrsvAEISEAKGRAETEIKVLQVRLETLEKENSQLK 267
Cdd:COG4913 366 ALLAALGLPLPASAEEFAALRAEAAALLEALEEEL---EALEEALAEAEAALRDLRRELRELEAEIASLE 432
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
137-439 |
4.89e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 4.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 137 AQLDAALQQKL----ATEDRVAHLDGALKECMKQLRHLREENEQRV-HDTLLKKTREYE------------KLRLEMEAR 199
Cdd:TIGR02169 166 AEFDRKKEKALeeleEVEENIERLDLIIDEKRQQLERLRREREKAErYQALLKEKREYEgyellkekealeRQKEAIERQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 200 LADSSHFLAQSRSELLEARAEVTALGHALQERSRSV------------AEISEAKG---RAETEIKVLQVRLETLEKENS 264
Cdd:TIGR02169 246 LASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIkdlgeeeqlrvkEKIGELEAeiaSLERSIAEKERELEDAEERLA 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 265 QLKYEVHvlNKELDIRSQEREYERKAVDMASKQhlesvKKIAKLEEEcnrLRLLVRKKLPGPGAIQRMRMEVEGVARDPA 344
Cdd:TIGR02169 326 KLEAEID--KLLAEIEELEREIEEERKRRDKLT-----EEYAELKEE---LEDLRAELEEVDKEFAETRDELKDYREKLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 345 DRRRRSMSRSGSQLDLLAVNGAMQDDGQDGRtQEAQMLAERVVAMDEEMKMLKEALAQRNGELHSARLLCSKTSTQLSAV 424
Cdd:TIGR02169 396 KLKREINELKRELDRLQEELQRLSEELADLN-AAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDL 474
|
330
....*....|....*.
gi 1373971148 425 EEEL-KIAKEQSEASK 439
Cdd:TIGR02169 475 KEEYdRVEKELSKLQR 490
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
182-452 |
9.40e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.97 E-value: 9.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 182 LLKKTREYEKLRLEMEarladsshflaQSRSELLEARAEVTALGHALQERSRSVAEISEAKGRAETEIKVLQVRLETLEK 261
Cdd:TIGR02168 672 ILERRREIEELEEKIE-----------ELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA 740
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 262 ENSQLKYEVHVLNKELDIRSQEREYERKAVDMASKQHLESVKKIAKLEEEcnrlrllvrkklpgpgaIQRMRMEVEgvar 341
Cdd:TIGR02168 741 EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQ-----------------IEQLKEELK---- 799
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 342 dpadRRRRSMSRSGSQLDLLAVNGAMQDDGQDGRTQEAQMLAERVVAMDEEMKMLKEALAQRNGELHSARLLCSKTSTQL 421
Cdd:TIGR02168 800 ----ALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESEL 875
|
250 260 270
....*....|....*....|....*....|.
gi 1373971148 422 savEEELKIAKEQSEASKNSNSQASNFSQEL 452
Cdd:TIGR02168 876 ---EALLNERASLEEALALLRSELEELSEEL 903
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
87-289 |
1.24e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.16 E-value: 1.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 87 EERAKILSEKLSNALADINSKDNVVKQHVKVAEEAVSGWeKAESEAVSLKAQLDAALQQKLATEDRVAHLDGALKECMKQ 166
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEF-RQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 167 LRHLREE-NEQRVHDTLLKKTREYEKLR---LEMEARLAD-SSHFLAQSrSELLEARAEVTALGHALQERSRSVAEisea 241
Cdd:COG3206 242 LAALRAQlGSGPDALPELLQSPVIQQLRaqlAELEAELAElSARYTPNH-PDVIALRAQIAALRAQLQQEAQRILA---- 316
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1373971148 242 kgRAETEIKVLQVRLETLEKENSQLKYEVHVLN-KELDIRSQEREYERK 289
Cdd:COG3206 317 --SLEAELEALQAREASLQAQLAQLEARLAELPeLEAELRRLEREVEVA 363
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
84-337 |
2.42e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 2.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 84 LQSEERAKILSEKLSNALADINSKDNVVKQHVKVAEEAVSGWEKAESEAVSLKAQLDAALQQKlatEDRVAHLDGALKEC 163
Cdd:TIGR02169 708 SQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEEL---EEDLHKLEEALNDL 784
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 164 MKQLRHLREENEQRVHDTLLKKTREYEKLRLEMEARLADSSHFLAQSRSELLEARAEVTALGHALQERSRSVAEISEAKG 243
Cdd:TIGR02169 785 EARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKE 864
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 244 RAETEIKVLQVRLETLEKENSQLKYEVHVLNKELDIRSQEREYERKAVDMASKQHLESVKKIAKLEEECNRLRLLVRKKL 323
Cdd:TIGR02169 865 ELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDE 944
|
250 260
....*....|....*....|
gi 1373971148 324 PGPGA------IQRMRMEVE 337
Cdd:TIGR02169 945 EIPEEelsledVQAELQRVE 964
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
84-295 |
9.51e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 9.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 84 LQSEERAKILSEKLSNALADINSKDNVVKQHVKVAEEAVSGWEKAESEAVSLKAQLDAALQQKLATEDRVAHLDGALKEC 163
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 164 MKQLRHLREENEQRV--------HDTL---------------LKKTREYEKLRLEMEARLADSSHFLAQSRSELLEARAE 220
Cdd:COG4942 96 RAELEAQKEELAELLralyrlgrQPPLalllspedfldavrrLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1373971148 221 VTALghaLQERSRSVAEISEAKGRAETEIKVLQVRLETLEKENSQLKYEVHVLNKELDIRSQEREYERKAVDMAS 295
Cdd:COG4942 176 LEAL---LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
85-316 |
1.56e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.74 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 85 QSEERAKILSEKLSNALADINSKDnvvKQHVKVAEEAvsgwEKAESEAVSLKAQLDAALQQKLATEDRVAHLDGALKECM 164
Cdd:TIGR02168 250 EAEEELEELTAELQELEEKLEELR---LEVSELEEEI----EELQKELYALANEISRLEQQKQILRERLANLERQLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 165 KQLRHLREENEQrvhdtLLKKTREYEKLRLEMEARLADSSHFLAQSRSELLEARAEVTALGHALQERSRSVAEISEAKGR 244
Cdd:TIGR02168 323 AQLEELESKLDE-----LAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIAS 397
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1373971148 245 AETEIKVLQVRLETLEKENSQLKYEvhvlnkeldIRSQEREYERKAVDMASKQHLESVKKIAKLEEECNRLR 316
Cdd:TIGR02168 398 LNNEIERLEARLERLEDRRERLQQE---------IEELLKKLEEAELKELQAELEELEEELEELQEELERLE 460
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
216-322 |
2.32e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.15 E-value: 2.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 216 EARAEVTALGHALQERSRSVAEISEAKgrAETEIKVLQVRLETLEKENSQLKYEVHvlnkELDIRSQEREYERKAVDMAS 295
Cdd:COG2433 384 ELIEKELPEEEPEAEREKEHEERELTE--EEEEIRRLEEQVERLEAEVEELEAELE----EKDERIERLERELSEARSEE 457
|
90 100
....*....|....*....|....*..
gi 1373971148 296 KQHLESVKKIAKLEEECNRLRLLVRKK 322
Cdd:COG2433 458 RREIRKDREISRLDREIERLERELEEE 484
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
77-655 |
2.34e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.35 E-value: 2.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 77 DEVKAHWLQSEERAKILSEKLSNALADINSKDNVVKQHVKVAEEAVSGWEKAESEAVSLKAQLDAALQQKLATEDRVAHL 156
Cdd:TIGR02168 326 EELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERL 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 157 DGALKECMKQLRHLREENEQRVHDTLLKKTREYEKLRLEMEARLADSSHFLAQSRSELLEARAEVTALGHALQERSRSVA 236
Cdd:TIGR02168 406 EARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELA 485
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 237 EISeakgraeTEIKVLQVRLETLEKENSQLKYEVHVLNKELDIRSQ-------EREYErKAVDMASKQHLESV----KKI 305
Cdd:TIGR02168 486 QLQ-------ARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVlselisvDEGYE-AAIEAALGGRLQAVvvenLNA 557
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 306 AKL------EEECNR-----LRLLVRKKLPGPGAIQRMRME-VEGVARDPADRRRRSMSRSGSQLDLLAV----NGAMQD 369
Cdd:TIGR02168 558 AKKaiaflkQNELGRvtflpLDSIKGTEIQGNDREILKNIEgFLGVAKDLVKFDPKLRKALSYLLGGVLVvddlDNALEL 637
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 370 -------------DGQ----DGR----------------------TQEAQMLAERVVAMDEEMKMLKEALAQRNGELHSA 410
Cdd:TIGR02168 638 akklrpgyrivtlDGDlvrpGGVitggsaktnssilerrreieelEEKIEELEEKIAELEKALAELRKELEELEEELEQL 717
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 411 RLLCSKTSTQLSAVEEELKIAKEQSEASKNSNSQASNFSQELTSRKSGSLFEKPKEsvkardsqNFELMDDFAEMERLam 490
Cdd:TIGR02168 718 RKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA--------EEELAEAEAEIEEL-- 787
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 491 svtltepqsamsitpNKLVKDLEEALASRARELDAKSQDLrvadqmcQELRAKLKEADKELAALRSQKATNEASMVSLQE 570
Cdd:TIGR02168 788 ---------------EAQIEQLKEELKALREALDELRAEL-------TLLNEEAANLRERLESLERRIAATERRLEDLEE 845
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 571 QLDLLSQRERRRSGSQSKrlCAYTLKDIVGKAKFNDDARTTSEA--SSFEGVMFDEQSSISDAESKASTAYLELSiALRK 648
Cdd:TIGR02168 846 QIEELSEDIESLAAEIEE--LEELIEELESELEALLNERASLEEalALLRSELEELSEELRELESKRSELRRELE-ELRE 922
|
....*..
gi 1373971148 649 IVHVVEM 655
Cdd:TIGR02168 923 KLAQLEL 929
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
160-316 |
2.42e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.97 E-value: 2.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 160 LKECMKQLRHLREENEQrvhdtLLKKTREYEKLRLEMEARLADSSHFLAQSRSELLEARAEVTALGHALQERSRSVAEIS 239
Cdd:PRK03918 167 LGEVIKEIKRRIERLEK-----FIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIE 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 240 EAK----------GRAETEIKVLQVRLETLEKENSQLKYEVHVLNKeldIRSQEREYERkavdmASKQHLESVKKIAKLE 309
Cdd:PRK03918 242 ELEkeleslegskRKLEEKIRELEERIEELKKEIEELEEKVKELKE---LKEKAEEYIK-----LSEFYEEYLDELREIE 313
|
....*..
gi 1373971148 310 EECNRLR 316
Cdd:PRK03918 314 KRLSRLE 320
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
76-558 |
2.82e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.05 E-value: 2.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 76 VDEVKAhwlQSEERAKilSEKLSNALADINSKDNVVKqhvKVAEEAVSGWEKAESEAVSLKAQLDAALQQKLATEDRVah 155
Cdd:PTZ00121 1304 ADEAKK---KAEEAKK--ADEAKKKAEEAKKKADAAK---KKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKK-- 1373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 156 ldgalKECMKQLRHLREENEQRVHDTLLKKTREYEKLRLE-------------------MEARLADSSHFLAQS--RSEL 214
Cdd:PTZ00121 1374 -----EEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADelkkaaaakkkadeakkkaEEKKKADEAKKKAEEakKADE 1448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 215 LEARAEVTALGHALQERSRSVAEISEAKGRAETEIKV--LQVRLETLEKENSQLKYEVHVLNKELDIRSQER-------- 284
Cdd:PTZ00121 1449 AKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKAdeAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEakkadeak 1528
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 285 --EYERKAVDMASKQHLESVKKIAKLEEecnrlrllVRKKLPGPGAIQRMRMEVEGVARDPADRRRRSMSRSGSQLDLLA 362
Cdd:PTZ00121 1529 kaEEAKKADEAKKAEEKKKADELKKAEE--------LKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKL 1600
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 363 VNGAMQDDGQDGR-TQEAQMLAERVVAMDEEMKMLKEALAQRNGELHSARllcsktstQLSAVEEELKIAKEQ---SEAS 438
Cdd:PTZ00121 1601 YEEEKKMKAEEAKkAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAE--------ELKKAEEENKIKAAEeakKAEE 1672
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 439 KNSNSQASNFSQELTSRKSGSLFEKPKESVKARdsqnfELMDDFAEMERLAMSVTLTEPQSAMSItpnklvkdleEALAS 518
Cdd:PTZ00121 1673 DKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAE-----ELKKKEAEEKKKAEELKKAEEENKIKA----------EEAKK 1737
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 1373971148 519 RARELDAKSQDLRVADQMCQELRAKLKEADKELAALRSQK 558
Cdd:PTZ00121 1738 EAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEK 1777
|
|
| PTZ00491 |
PTZ00491 |
major vault protein; Provisional |
168-310 |
4.06e-03 |
|
major vault protein; Provisional
Pssm-ID: 240439 [Multi-domain] Cd Length: 850 Bit Score: 41.54 E-value: 4.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 168 RHLREENEQRVHDTLlkktrEYEKLRLEMEARladsshflaQSRSELLEARAEVTALGHALQERSRSVAEISEAKGRAET 247
Cdd:PTZ00491 669 RHQAELLEQEARGRL-----ERQKMHDKAKAE---------EQRTKLLELQAESAAVESSGQSRAEALAEAEARLIEAEA 734
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1373971148 248 EIKVLQVRLETLEKE-NSQLKyevhVLNKEldiRSQEREYERKAVDMAskqhlesVKKIAKLEE 310
Cdd:PTZ00491 735 EVEQAELRAKALRIEaEAELE----KLRKR---QELELEYEQAQNELE-------IAKAKELAD 784
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
161-589 |
5.36e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.28 E-value: 5.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 161 KECMKQLRHLREENEQRVHDTLLK--KTREYEKLRLEMEARLADSSHFLAQSR----SELLEARAEVTALGHALQERSRS 234
Cdd:PTZ00121 1118 EEAKKKAEDARKAEEARKAEDARKaeEARKAEDAKRVEIARKAEDARKAEEARkaedAKKAEAARKAEEVRKAEELRKAE 1197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 235 VAEISEAKGRAETEIKVLQVRLETLEKENSQLKYEVHVLNKELDIRSQERE---YERKAVDMASKQHLESVKKIAKLEEE 311
Cdd:PTZ00121 1198 DARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEErnnEEIRKFEEARMAHFARRQAAIKAEEA 1277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 312 cnRLRLLVRKKLPGPGAIQRMRmeVEGVARDPADRRRRSMSRSGSQLDLLAVNGAMQDDGQDGRTQEAQMLAERVVAMDE 391
Cdd:PTZ00121 1278 --RKADELKKAEEKKKADEAKK--AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAE 1353
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 392 EMKMLKEALAQRNGELHSARLLCSKTSTQLSAVEEELKIAKEQSEASKNSNSQASNFSQELTSRKSGSLFEKPKESVKAR 471
Cdd:PTZ00121 1354 AAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKA 1433
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 472 DSqnfelMDDFAEMERLAMSVtltEPQSAMSITPNKLVKDLEEAlaSRARELDAKSQDLRVADQMCQELRAKLKEADKEL 551
Cdd:PTZ00121 1434 DE-----AKKKAEEAKKADEA---KKKAEEAKKAEEAKKKAEEA--KKADEAKKKAEEAKKADEAKKKAEEAKKKADEAK 1503
|
410 420 430
....*....|....*....|....*....|....*...
gi 1373971148 552 AALRSQKATNEASMVSLQEQLDLLSQRERRRSGSQSKR 589
Cdd:PTZ00121 1504 KAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK 1541
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
514-590 |
6.31e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 6.31e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1373971148 514 EALASRARELDAKSQDLRVADQMCQELRAKLKEADKELAALRSQKATNEASMVSLQEQLDLLSQRERRRSGSQSKRL 590
Cdd:COG4913 671 AELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLEL 747
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
245-616 |
6.76e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.79 E-value: 6.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 245 AETEIKVLQVRLETLEKENSQLKYEVHVLNKEldiRSQEREYERKAVDMASkQHLESVKKIAKLEEECNRLRLLV----R 320
Cdd:PRK02224 197 EEKEEKDLHERLNGLESELAELDEEIERYEEQ---REQARETRDEADEVLE-EHEERREELETLEAEIEDLRETIaeteR 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 321 KKLPGPGAIQRMRMEVEGVARDPADRRRR-------SMSRSGSQLDLLAVNGAMQDDGQDGRTQ------EAQMLAERVV 387
Cdd:PRK02224 273 EREELAEEVRDLRERLEELEEERDDLLAEaglddadAEAVEARREELEDRDEELRDRLEECRVAaqahneEAESLREDAD 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 388 AMDEEMKMLKEALAQRNGELHSARLLCSKTSTQLSAVEEELKIAKEQSEASKNSNSQASNFSQELTSRKSGSlfekpKES 467
Cdd:PRK02224 353 DLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDEL-----RER 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 468 VKARDSQNFELMDDFAEMERLamsvtLTE---PQSAMSITPNKLVKDLEEALASRArELDAKSQDlrvadqmcqeLRAKL 544
Cdd:PRK02224 428 EAELEATLRTARERVEEAEAL-----LEAgkcPECGQPVEGSPHVETIEEDRERVE-ELEAELED----------LEEEV 491
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1373971148 545 KEADKELAALRSQKATnEASMVSLQEQLDLLSQR-ERRRSGSQSKRLCAYTLKDivGKAKFNDDARTTSEASS 616
Cdd:PRK02224 492 EEVEERLERAEDLVEA-EDRIERLEERREDLEELiAERRETIEEKRERAEELRE--RAAELEAEAEEKREAAA 561
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
208-570 |
6.79e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.82 E-value: 6.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 208 AQSRSELLEARAEVTALGHALQERSRSVAEISEAKGRAETEIKVLQVRLETLEKE-NSQLKYevhvlnkeLDIRSQEREY 286
Cdd:TIGR02169 152 PVERRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRErEKAERY--------QALLKEKREY 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 287 ERKAVDMASKQHLESVKKI----AKLEEECNRLRLLVRKKLPGPGAIQRMRMEVEgvaRDPADRRRRSMSRSGSQLDLLA 362
Cdd:TIGR02169 224 EGYELLKEKEALERQKEAIerqlASLEEELEKLTEEISELEKRLEEIEQLLEELN---KKIKDLGEEEQLRVKEKIGELE 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 363 VNGAMQDDGQDGRTQEAQMLAERVVAMDEEMKMLKEALAQRNGELHSARLLCSKTSTQLSAVEEELKIAKEQSEASKNSN 442
Cdd:TIGR02169 301 AEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEF 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 443 SQASNFSQELTSRKSGsLFEKPKESVKARDSQNFELMDDFAEMERLAMSVTLTEPQSAMSITPnklVKDLEEALASRARE 522
Cdd:TIGR02169 381 AETRDELKDYREKLEK-LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEE---KEDKALEIKKQEWK 456
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 1373971148 523 LDAKSQDLRVADQMCQELRAKLKEADKELAALRSQKATNEASMVSLQE 570
Cdd:TIGR02169 457 LEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEE 504
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
360-581 |
6.91e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 6.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 360 LLAVNGAMQDDGQDGRTQEAQMLAERVVAMDEEMKMLKEALAQRNGELHSARLLCSKTSTQLSAVEEELKIAKEQSEASK 439
Cdd:COG4942 10 LLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 440 NSNSQASnfsQELTSRKsgslfEKPKESVKA--RDSQNFELM-----DDFAEMERLAMSVTLTEPQsamsitpnklVKDL 512
Cdd:COG4942 90 KEIAELR---AELEAQK-----EELAELLRAlyRLGRQPPLAlllspEDFLDAVRRLQYLKYLAPA----------RREQ 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1373971148 513 EEALASRARELDAKSQDLRVADQMCQELRAKLKEADKELAALRSQK----ATNEASMVSLQEQLDLLSQRERR 581
Cdd:COG4942 152 AEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERqkllARLEKELAELAAELAELQQEAEE 224
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
392-590 |
7.22e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.81 E-value: 7.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 392 EMKMLKEALAQRNGELHSARLLCSKTSTQLSAVEEELKIAK-EQSEASKNSNSQASNFsQELTSRKSGslFEKPKESVKA 470
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRlEVSELEEEIEELQKEL-YALANEISR--LEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 471 RDSQnfelmddfAEMERLAMSVTLTEPQSaMSITPNKLVKDLEEALASRARELDAKSQDLRVADQMCQELRAKLKEADKE 550
Cdd:TIGR02168 310 RLAN--------LERQLEELEAQLEELES-KLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQ 380
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1373971148 551 L-------AALRSQKATNEASMVSLQEQLDLLSQRERRRSGSQSKRL 590
Cdd:TIGR02168 381 LetlrskvAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELL 427
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
87-323 |
8.22e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.43 E-value: 8.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 87 EERAKILSEKLSNALADINSKDNVVKQhvkvAEEAVSGWEKAESEAVSLKAQLDAALQQKLATEDRVAHLDGALKECMKQ 166
Cdd:PRK03918 192 EELIKEKEKELEEVLREINEISSELPE----LREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEER 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 167 LRHLREENEQrvhdtLLKKTREYEKLRLEMEARLAdsshfLAQSRSELLEARAEvtalghalqersrsvaeISEAKGRAE 246
Cdd:PRK03918 268 IEELKKEIEE-----LEEKVKELKELKEKAEEYIK-----LSEFYEEYLDELRE-----------------IEKRLSRLE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 247 TEIKVLQVRLETLEKENSQL----KYEVHVLNKELDIRSQEREYERKAVDMASKQHLESVKKIAKLEEECNRLRLLVRKK 322
Cdd:PRK03918 321 EEINGIEERIKELEEKEERLeelkKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAK 400
|
.
gi 1373971148 323 L 323
Cdd:PRK03918 401 E 401
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
195-316 |
8.66e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.14 E-value: 8.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 195 EMEARLADSSHFLAQSRSELLEARAEVTALGHALQERSRSVAEISEAKGRAETEIKVLQVRLETLEKENSQLKyevhvLN 274
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVR-----NN 88
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1373971148 275 KELDIRSQEREYERKAVDMASKQHLESVKKIAKLEEECNRLR 316
Cdd:COG1579 89 KEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELE 130
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
70-322 |
9.43e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.51 E-value: 9.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 70 DRNRMAVDEVKAHWLQSEERAKiLSEKLSNAlADINSKDNVVK-QHVKVAEEAVSGWEKAESEAVSLKAQLDAALQQKLA 148
Cdd:PTZ00121 1513 DEAKKAEEAKKADEAKKAEEAK-KADEAKKA-EEKKKADELKKaEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAE 1590
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 149 TEDRVAHLDGALKECMKQLRHLREENEQRVHDTLLKKTREYEKLRLEMEARLADSSHFLAQSRSELLEARAEVTALGHAL 228
Cdd:PTZ00121 1591 EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKA 1670
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1373971148 229 QERSRSVAEISEA-----------KGRAETEIKVLQVRLETLE--KENSQLKYEVHVLNKELDIRSQEREYERKAVDMAS 295
Cdd:PTZ00121 1671 EEDKKKAEEAKKAeedekkaaealKKEAEEAKKAEELKKKEAEekKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK 1750
|
250 260
....*....|....*....|....*..
gi 1373971148 296 KQHLESvKKIAKLEEECNRLRLLVRKK 322
Cdd:PTZ00121 1751 KDEEEK-KKIAHLKKEEEKKAEEIRKE 1776
|
|
| |
