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Conserved domains on  [gi|1390094401|ref|XP_024999481|]
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peptidyl-prolyl cis-trans isomerase FKBP5 isoform X1 [Gallus gallus]

Protein Classification

FKBP_C and TPR domain-containing protein( domain architecture ID 11991378)

FKBP_C and TPR domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
44-135 1.51e-40

FKBP-type peptidyl-prolyl cis-trans isomerase;


:

Pssm-ID: 459735  Cd Length: 94  Bit Score: 140.02  E-value: 1.51e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401  44 DESPMIGDKVYVHYKGKLANGKKFDSSRDRNEPFIFSLGKGQVIKAWDIGVATMKKGEVCYLLCKPEYAYGAAGSAP-KI 122
Cdd:pfam00254   2 PEKAKKGDRVTVHYTGTLEDGTVFDSSYDRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGLAGpVI 81

                          90
                  ....*....|...
gi 1390094401 123 PSNATLFFEIELL 135
Cdd:pfam00254  82 PPNATLVFEVELL 94
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
266-403 1.07e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 64.64  E-value: 1.07e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401 266 EQAAIVKEKGTMYFKEGKYLQAVIQYGKIvswLEMEYGLSEkeskasdsfllaAFLNLAMCYLKLREYTKAVECCDKALG 345
Cdd:COG0457     6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKA---LELDPDDAE------------ALYNLGLAYLRLGRYEEALADYEQALE 70

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1390094401 346 LDQDNEKGLYRRGEARLLMNEFELAKCDFQKVLEVNPQNKAARSQISICQKKTKEHNE 403
Cdd:COG0457    71 LDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDE 128
 
Name Accession Description Interval E-value
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
44-135 1.51e-40

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 459735  Cd Length: 94  Bit Score: 140.02  E-value: 1.51e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401  44 DESPMIGDKVYVHYKGKLANGKKFDSSRDRNEPFIFSLGKGQVIKAWDIGVATMKKGEVCYLLCKPEYAYGAAGSAP-KI 122
Cdd:pfam00254   2 PEKAKKGDRVTVHYTGTLEDGTVFDSSYDRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGLAGpVI 81

                          90
                  ....*....|...
gi 1390094401 123 PSNATLFFEIELL 135
Cdd:pfam00254  82 PPNATLVFEVELL 94
FkpA COG0545
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ...
 45-137 6.98e-39

FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440311 [Multi-domain]  Cd Length: 104  Bit Score: 136.08  E-value: 6.98e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401  45 ESPMIGDKVYVHYKGKLANGKKFDSSRDRNEPFIFSLGKGQVIKAWDIGVATMKKGEVCYLLCKPEYAYGAAGSAPKIPS 124
Cdd:COG0545    12 AKPKAGDTVTVHYTGTLLDGTVFDSSYDRGEPATFPLGVGQVIPGWDEGLQGMKVGGKRRLVIPPELAYGERGAGGVIPP 91

                          90
                  ....*....|...
gi 1390094401 125 NATLFFEIELLDF 137
Cdd:COG0545    92 NSTLVFEVELLDV 104
PRK10902 PRK10902
FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
 32-138 2.14e-20

FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional


Pssm-ID: 236791 [Multi-domain]  Cd Length: 269  Bit Score: 90.59  E-value: 2.14e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401  32 GVLKIIKRPGNeDESPMIGDKVYVHYKGKLANGKKFDSSRDRNEPFIFSLGKgqVIKAWDIGVATMKKGEVCYLLCKPEY 111
Cdd:PRK10902  147 GLLYKVEKEGT-GEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG--VIPGWTEGLKNIKKGGKIKLVIPPEL 223

                          90       100
                  ....*....|....*....|....*..
gi 1390094401 112 AYGAAGsAPKIPSNATLFFEIELLDFK 138
Cdd:PRK10902  224 AYGKAG-VPGIPANSTLVFDVELLDVK 249
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
266-403 1.07e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 64.64  E-value: 1.07e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401 266 EQAAIVKEKGTMYFKEGKYLQAVIQYGKIvswLEMEYGLSEkeskasdsfllaAFLNLAMCYLKLREYTKAVECCDKALG 345
Cdd:COG0457     6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKA---LELDPDDAE------------ALYNLGLAYLRLGRYEEALADYEQALE 70

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1390094401 346 LDQDNEKGLYRRGEARLLMNEFELAKCDFQKVLEVNPQNKAARSQISICQKKTKEHNE 403
Cdd:COG0457    71 LDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDE 128
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 230-397 1.25e-06

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 50.75  E-value: 1.25e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401 230 KPKY-GIQANAELVYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTMYFKEGKYLQAVIQYGKIVSWLEMEY-GLSEK 307
Cdd:TIGR00990 274 KPRPaGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHlEALAD 353

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401 308 ESKASDSF--LLAAFLNLAMCYLKLREYTKAVECCDKALGLDQDNEKGLYRRGEARLLMNEFELAKCDFQKVLEVNPQNK 385
Cdd:TIGR00990 354 LSKSIELDprVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI 433

                         170
                  ....*....|..
gi 1390094401 386 AARSQISICQKK 397
Cdd:TIGR00990 434 FSHIQLGVTQYK 445
TPR_1 pfam00515
Tetratricopeptide repeat;
319-350 3.07e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 43.56  E-value: 3.07e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1390094401 319 AFLNLAMCYLKLREYTKAVECCDKALGLDQDN 350
Cdd:pfam00515   3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 319-350 3.08e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 43.59  E-value: 3.08e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1390094401  319 AFLNLAMCYLKLREYTKAVECCDKALGLDQDN 350
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PRK15359 PRK15359
type III secretion system chaperone protein SscB; Provisional
 260-391 5.99e-05

type III secretion system chaperone protein SscB; Provisional


Pssm-ID: 185257 [Multi-domain]  Cd Length: 144  Bit Score: 43.06  E-value: 5.99e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401 260 DTKEKLEQAAI----------VKEKGTMYFKEGKYLQAVIQYgkivSWLEMEYGLSEKeskasdsfllaAFLNLAMCYLK 329
Cdd:PRK15359    6 DQKNKIPEDILkqllsvdpetVYASGYASWQEGDYSRAVIDF----SWLVMAQPWSWR-----------AHIALAGTWMM 70

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1390094401 330 LREYTKAVECCDKALGLDQDNEKGLYRRGEARLLMNEFELAKCDFQKVLEVNpQNKAARSQI 391
Cdd:PRK15359   71 LKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADASWSEI 131
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 318-382 8.17e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 41.07  E-value: 8.17e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1390094401 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDQDNEKGLYRRGEARLLMNEFELAKCDFQKVLEVNP 382
Cdd:cd24142     1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDP 65
 
Name Accession Description Interval E-value
FKBP_C pfam00254
FKBP-type peptidyl-prolyl cis-trans isomerase;
44-135 1.51e-40

FKBP-type peptidyl-prolyl cis-trans isomerase;


Pssm-ID: 459735  Cd Length: 94  Bit Score: 140.02  E-value: 1.51e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401  44 DESPMIGDKVYVHYKGKLANGKKFDSSRDRNEPFIFSLGKGQVIKAWDIGVATMKKGEVCYLLCKPEYAYGAAGSAP-KI 122
Cdd:pfam00254   2 PEKAKKGDRVTVHYTGTLEDGTVFDSSYDRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGLAGpVI 81

                          90
                  ....*....|...
gi 1390094401 123 PSNATLFFEIELL 135
Cdd:pfam00254  82 PPNATLVFEVELL 94
FkpA COG0545
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ...
 45-137 6.98e-39

FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440311 [Multi-domain]  Cd Length: 104  Bit Score: 136.08  E-value: 6.98e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401  45 ESPMIGDKVYVHYKGKLANGKKFDSSRDRNEPFIFSLGKGQVIKAWDIGVATMKKGEVCYLLCKPEYAYGAAGSAPKIPS 124
Cdd:COG0545    12 AKPKAGDTVTVHYTGTLLDGTVFDSSYDRGEPATFPLGVGQVIPGWDEGLQGMKVGGKRRLVIPPELAYGERGAGGVIPP 91

                          90
                  ....*....|...
gi 1390094401 125 NATLFFEIELLDF 137
Cdd:COG0545    92 NSTLVFEVELLDV 104
PRK10902 PRK10902
FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
 32-138 2.14e-20

FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional


Pssm-ID: 236791 [Multi-domain]  Cd Length: 269  Bit Score: 90.59  E-value: 2.14e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401  32 GVLKIIKRPGNeDESPMIGDKVYVHYKGKLANGKKFDSSRDRNEPFIFSLGKgqVIKAWDIGVATMKKGEVCYLLCKPEY 111
Cdd:PRK10902  147 GLLYKVEKEGT-GEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG--VIPGWTEGLKNIKKGGKIKLVIPPEL 223

                          90       100
                  ....*....|....*....|....*..
gi 1390094401 112 AYGAAGsAPKIPSNATLFFEIELLDFK 138
Cdd:PRK10902  224 AYGKAG-VPGIPANSTLVFDVELLDVK 249
PRK11570 PRK11570
peptidyl-prolyl cis-trans isomerase; Provisional
 5-136 4.22e-13

peptidyl-prolyl cis-trans isomerase; Provisional


Pssm-ID: 183207 [Multi-domain]  Cd Length: 206  Bit Score: 67.90  E-value: 4.22e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401   5 EATKPEGEVQAAALAERgEDITPTRDRGVLKIIKRpgNEDESPMIGDKVYVHYKGKLANGKKFDSSRDRNEPFIFSLGKg 84
Cdd:PRK11570   78 QAMAAEGVKFLEENAKK-EGVNSTESGLQFRVLTQ--GEGAIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVNG- 153

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1390094401  85 qVIKAWDIGVATMKKGEVCYLLCKPEYAYGAAGSAPKIPSNATLFFEIELLD 136
Cdd:PRK11570  154 -VIPGWIEALTLMPVGSKWELTIPHELAYGERGAGASIPPFSTLVFEVELLE 204
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
266-403 1.07e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 64.64  E-value: 1.07e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401 266 EQAAIVKEKGTMYFKEGKYLQAVIQYGKIvswLEMEYGLSEkeskasdsfllaAFLNLAMCYLKLREYTKAVECCDKALG 345
Cdd:COG0457     6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKA---LELDPDDAE------------ALYNLGLAYLRLGRYEEALADYEQALE 70

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1390094401 346 LDQDNEKGLYRRGEARLLMNEFELAKCDFQKVLEVNPQNKAARSQISICQKKTKEHNE 403
Cdd:COG0457    71 LDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDE 128
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
275-403 2.92e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 63.49  E-value: 2.92e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401 275 GTMYFKEGKYLQAVIQYGKIvswLEMEYGLSEkeskasdsfllaAFLNLAMCYLKLREYTKAVECCDKALGLDQDNEKGL 354
Cdd:COG0457    49 GLAYLRLGRYEEALADYEQA---LELDPDDAE------------ALNNLGLALQALGRYEEALEDYDKALELDPDDAEAL 113

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1390094401 355 YRRGEARLLMNEFELAKCDFQKVLEVNPQNKAARSQISICQKKTKEHNE 403
Cdd:COG0457   114 YNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEE 162
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
266-424 4.76e-11

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 62.24  E-value: 4.76e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401 266 EQAAIVKEKGTMYFKEGKYLQAVIQYGKIvswLEMEYGLSEkeskasdsfllaAFLNLAMCYLKLREYTKAVECCDKALG 345
Cdd:COG4785    71 DLAQLYYERGVAYDSLGDYDLAIADFDQA---LELDPDLAE------------AYNNRGLAYLLLGDYDAALEDFDRALE 135

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1390094401 346 LDQDNEKGLYRRGEARLLMNEFELAKCDFQKVLEVNPQNKAARSQISICQKKTKEHNERDRRIYANMFAKFAERDAKEA 424
Cdd:COG4785   136 LDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEKALALLLEDWATAYLLQGDTEEA 214
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 319-403 2.94e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 57.71  E-value: 2.94e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401 319 AFLNLAMCYLKLREYTKAVECCDKALGLDQDNEKGLYRRGEARLLMNEFELAKCDFQKVLEVNPQNKAARSQISICQKKT 398
Cdd:COG4235    19 GWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQ 98


                  ....*
gi 1390094401 399 KEHNE 403
Cdd:COG4235    99 GDYAE 103
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
247-438 5.20e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 59.64  E-value: 5.20e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTMYFKEGKYLQAVIQYGKIVswlemeyglsekeskASDSFLLAAFLNLAMC 326
Cdd:COG0457    55 LGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKAL---------------ELDPDDAEALYNLGLA 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401 327 YLKLREYTKAVECCDKALGLDQDNEKGLYRRGEARLLMNEFELAKCDFQKVLEVNPQNKAARSQISICQKKTKEHNERDR 406
Cdd:COG0457   120 LLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLAL 199

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1390094401 407 RIYANMFAKFAERDAKEAASKTRVEKESATAA 438
Cdd:COG0457   200 LLALEQALRKKLAILTLAALAELLLLALALLL 231
SlpA COG1047
Peptidyl-prolyl cis-trans isomerase, FKBP type [Posttranslational modification, protein ...
 50-150 2.23e-09

Peptidyl-prolyl cis-trans isomerase, FKBP type [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440668 [Multi-domain]  Cd Length: 138  Bit Score: 55.49  E-value: 2.23e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401  50 GDKVYVHYKGKLANGKKFDSSRDRnEPFIFSLGKGQVIKAWDIGVATMKKGEVCYLLCKPEYAYGaagsapkiPSNATLF 129
Cdd:COG1047     4 GDVVTLHYTLKLEDGEVFDSTFEG-EPLEFLHGAGQLIPGLEEALEGMEVGDKKTVTLPPEEAYG--------ERDPELV 74

                          90       100
                  ....*....|....*....|.
gi 1390094401 130 FEIELLDFKGEDLFEDGGIIR 150
Cdd:COG1047    75 QTVPREQFPEDEELEVGMQVE 95
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 275-388 3.57e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 54.63  E-value: 3.57e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401 275 GTMYFKEGKYLQAVIQYGKIVSwlemeygLSEKESkasdsfllAAFLNLAMCYLKLREYTKAVECCDKALGLDQDNEKGL 354
Cdd:COG4235    24 GRAYLRLGRYDEALAAYEKALR-------LDPDNA--------DALLDLAEALLAAGDTEEAEELLERALALDPDNPEAL 88

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1390094401 355 YRRGEARLLMNEFELAKCDFQKVLEVNPQNKAAR 388
Cdd:COG4235    89 YLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 250-403 3.69e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 57.43  E-value: 3.69e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401 250 FEKAKESWEMDTKEKLEQAAIVKEKGTMYFKEGKYLQAVIQYGKIVswlemeyglsekeskASDSFLLAAFLNLAMCYLK 329
Cdd:COG2956    58 YDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLL---------------ELDPDDAEALRLLAEIYEQ 122

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1390094401 330 LREYTKAVECCDKALGLDQDNEKGLYRRGEARLLMNEFELAKCDFQKVLEVNPQNKAARSQISICQKKTKEHNE 403
Cdd:COG2956   123 EGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEE 196
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 265-403 7.62e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 57.70  E-value: 7.62e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401 265 LEQAAIVKEKGTMYFKEGKYLQAVIQYGKIVswlemeyglsekeskASDSFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344
Cdd:COG3914    75 LLLAALLELAALLLQALGRYEEALALYRRAL---------------ALNPDNAEALFNLGNLLLALGRLEEALAALRRAL 139

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1390094401 345 GLDQDNEKGLYRRGEARLLMNEFELAKCDFQKVLEVNPQNKAARSQISICQKKTKEHNE 403
Cdd:COG3914   140 ALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEE 198
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 250-438 1.86e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 55.51  E-value: 1.86e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401 250 FEKAKESWEMDTKEKLEQAAIVKEKGTMYFKEGKYLQAVIQYGKIvswlemeyglsEKESKASDSFLLaaflNLAMCYLK 329
Cdd:COG2956    92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERL-----------LKLGPENAHAYC----ELAELYLE 156

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401 330 LREYTKAVECCDKALGLDQDNEKGLYRRGEARLLMNEFELAKCDFQKVLEVNPQNKAARSQISICQKKTKEHnERDRRIY 409
Cdd:COG2956   157 QGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDP-EEALELL 235

                         170       180
                  ....*....|....*....|....*....
gi 1390094401 410 ANMFAKFAERDAKEAASKTRVEKESATAA 438
Cdd:COG2956   236 RKALELDPSDDLLLALADLLERKEGLEAA 264
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 275-391 4.88e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 55.38  E-value: 4.88e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401 275 GTMYFKEGKYLQAVIQYGKIvswLEMEYGLSEkeskasdsfllaAFLNLAMCYLKLREYTKAVECCDKALGLDQDNEKGL 354
Cdd:COG3914   119 GNLLLALGRLEEALAALRRA---LALNPDFAE------------AYLNLGEALRRLGRLEEAIAALRRALELDPDNAEAL 183

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1390094401 355 YRRGEARLLMNEFELAKCDFQKVLEVNPQNKAARSQI 391
Cdd:COG3914   184 NNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 315-403 4.94e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 52.27  E-value: 4.94e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401 315 FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDQDNEKGLYRRGEARLLMNEFELAKCDFQKVLEVNPQNKAARSQISIC 394
Cdd:COG5010    52 KAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAAL 131


                  ....*....
gi 1390094401 395 QKKTKEHNE 403
Cdd:COG5010   132 LLSLGQDDE 140
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 263-382 1.05e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 51.11  E-value: 1.05e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401 263 EKLEQAAIVKEKGTMYFKEGKYLQAVIQYGKIVswlemeyglsekeskASDSFLLAAFLNLAMCYLKLREYTKAVECCDK 342
Cdd:COG5010    49 KLAKAFAIESPSDNLYNKLGDFEESLALLEQAL---------------QLDPNNPELYYNLALLYSRSGDKDEAKEYYEK 113

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1390094401 343 ALGLDQDNEKGLYRRGEARLLMNEFELAKCDFQKVLEVNP 382
Cdd:COG5010   114 ALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 274-384 2.68e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 49.81  E-value: 2.68e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401 274 KGTMYFKEGKYLQAVIQYgkivswlemeyglseKESKASDSFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDQDNEKG 353
Cdd:COG4783    44 LGEILLQLGDLDEAIVLL---------------HEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEA 108

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1390094401 354 LYRRGEARLLMNEFELAKCDFQKVLEVNPQN 384
Cdd:COG4783   109 YLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 318-403 5.52e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 48.65  E-value: 5.52e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDQDNEKGLYRRGEARLLMNEFELAKCDFQKVLEVNPQNKAARSQISICQKK 397
Cdd:COG4783    39 EAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRA 118


                  ....*.
gi 1390094401 398 TKEHNE 403
Cdd:COG4783   119 LGRPDE 124
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
326-403 6.13e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.47  E-value: 6.13e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1390094401 326 CYLKLREYTKAVECCDKALGLDQDNEKGLYRRGEARLLMNEFELAKcDFQKVLEVNPQNKAARSQISICQKKTKEHNE 403
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDE 77
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 273-403 1.07e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 50.11  E-value: 1.07e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401 273 EKGTMYFKEGKYLQAVIQYGKIVswlemeyglsekeskASDSFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDQDNEK 352
Cdd:COG2956    13 FKGLNYLLNGQPDKAIDLLEEAL---------------ELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAE 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1390094401 353 GLYRRGEARLLMNEFELAKCDFQKVLEVNPQNKAARSQISICQKKTKEHNE 403
Cdd:COG2956    78 ALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEK 128
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 230-397 1.25e-06

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 50.75  E-value: 1.25e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401 230 KPKY-GIQANAELVYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTMYFKEGKYLQAVIQYGKIVSWLEMEY-GLSEK 307
Cdd:TIGR00990 274 KPRPaGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHlEALAD 353

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401 308 ESKASDSF--LLAAFLNLAMCYLKLREYTKAVECCDKALGLDQDNEKGLYRRGEARLLMNEFELAKCDFQKVLEVNPQNK 385
Cdd:TIGR00990 354 LSKSIELDprVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI 433

                         170
                  ....*....|..
gi 1390094401 386 AARSQISICQKK 397
Cdd:TIGR00990 434 FSHIQLGVTQYK 445
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 247-384 2.72e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 48.57  E-value: 2.72e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTMYFKEGKYLQAVIQYGKIVswlemeyglsekeskASDSFLLAAFLNLAMC 326
Cdd:COG2956   123 EGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL---------------KLDPDCARALLLLAEL 187

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1390094401 327 YLKLREYTKAVECCDKALGLDQDNEKGLYRRGEARLLMNEFELAKCDFQKVLEVNPQN 384
Cdd:COG2956   188 YLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD 245
TPR_1 pfam00515
Tetratricopeptide repeat;
319-350 3.07e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 43.56  E-value: 3.07e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1390094401 319 AFLNLAMCYLKLREYTKAVECCDKALGLDQDN 350
Cdd:pfam00515   3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 319-350 3.08e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 43.59  E-value: 3.08e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1390094401  319 AFLNLAMCYLKLREYTKAVECCDKALGLDQDN 350
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
278-382 8.71e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 44.01  E-value: 8.71e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401 278 YFKEGKYLQAVIQYGKIVswlemeyglsekeskASDSFLLAAFLNLAMCYLKLREYTKAVECcDKALGLDQDNEKGLYRR 357
Cdd:COG3063     2 YLKLGDLEEAEEYYEKAL---------------ELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNL 65

                          90       100
                  ....*....|....*....|....*
gi 1390094401 358 GEARLLMNEFELAKCDFQKVLEVNP 382
Cdd:COG3063    66 AELLLELGDYDEALAYLERALELDP 90
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 248-393 1.48e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 47.39  E-value: 1.48e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTMYFKEGKYLQAVIQYGKIVswlemeyglsekesKASDSFLLAAFLnLAMCY 327
Cdd:TIGR02917 275 KNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQIL--------------KYAPNSHQARRL-LASIQ 339

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1390094401 328 LKLREYTKAVECCDKALGLDQDNEKGLYRRGEARLLMNEFELAKCDFQKVLEVNPQNKAARSQISI 393
Cdd:TIGR02917 340 LRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGI 405
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 278-388 1.83e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 43.83  E-value: 1.83e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401 278 YFKEGKYLQAVIQYGKIVswlemeyglsekESKASDSFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDQDNEK---GL 354
Cdd:COG1729     3 LLKAGDYDEAIAAFKAFL------------KRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdAL 70

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1390094401 355 YRRGEARLLMNEFELAKCDFQKVLEVNPQNKAAR 388
Cdd:COG1729    71 LKLGLSYLELGDYDKARATLEELIKKYPDSEAAK 104
PRK15359 PRK15359
type III secretion system chaperone protein SscB; Provisional
 260-391 5.99e-05

type III secretion system chaperone protein SscB; Provisional


Pssm-ID: 185257 [Multi-domain]  Cd Length: 144  Bit Score: 43.06  E-value: 5.99e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401 260 DTKEKLEQAAI----------VKEKGTMYFKEGKYLQAVIQYgkivSWLEMEYGLSEKeskasdsfllaAFLNLAMCYLK 329
Cdd:PRK15359    6 DQKNKIPEDILkqllsvdpetVYASGYASWQEGDYSRAVIDF----SWLVMAQPWSWR-----------AHIALAGTWMM 70

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1390094401 330 LREYTKAVECCDKALGLDQDNEKGLYRRGEARLLMNEFELAKCDFQKVLEVNpQNKAARSQI 391
Cdd:PRK15359   71 LKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADASWSEI 131
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 263-374 7.56e-05

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 44.97  E-value: 7.56e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401 263 EKLEQAAIVKEKGTMYFKEGKYLQAVIQYGKIVswlemeyglsekESKASDSFllaaFLNLAMCYLKLREYTKAVECCDK 342
Cdd:TIGR00990 122 ERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAI------------ECKPDPVY----YSNRAACHNALGDWEKVVEDTTA 185

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1390094401 343 ALGLDQDNEKGLYRRGEARLLMNEFELAKCDF 374
Cdd:TIGR00990 186 ALELDPDYSKALNRRANAYDGLGKYADALLDL 217
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 275-400 2.67e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.53  E-value: 2.67e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401 275 GTMYFKEGKYLQAVIQYGKIVSwlemeYGLSEKeskasdsfllAAFLNLAMCYLKLREYTKAVECCDKALGLDQDNEKGL 354
Cdd:TIGR02917  63 GKIYLALGDYAAAEKELRKALS-----LGYPKN----------QVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAEL 127

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1390094401 355 YR-RGEARLLMNEFELAKCDFQKVLEVNPQN---KAARSQISICQKKTKE 400
Cdd:TIGR02917 128 LAlRGLAYLGLGQLELAQKSYEQALAIDPRSlyaKLGLAQLALAENRFDE 177
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 318-382 8.17e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 41.07  E-value: 8.17e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1390094401 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDQDNEKGLYRRGEARLLMNEFELAKCDFQKVLEVNP 382
Cdd:cd24142     1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDP 65
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
293-391 8.99e-04

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 40.64  E-value: 8.99e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401 293 KIVSWLEMEYGLSEKESKASDSFLLAAFLNLAMCYLKLREYTKAVECCDKAL-GLDQDNEKGLYRRGEARLLMNEFELAK 371
Cdd:COG4700    65 AARNALDPGRELRELEKALEFADTVQNRVRLADALLELGRYDEAIELYEEALtGIFADDPHILLGLAQALFELGRYAEAL 144

                          90       100
                  ....*....|....*....|
gi 1390094401 372 CDFQKVLEVNPQNKAARSQI 391
Cdd:COG4700   145 ETLEKLIAKNPDFKSSDAHL 164
PRK15095 PRK15095
FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
 53-114 1.93e-03

FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional


Pssm-ID: 237908 [Multi-domain]  Cd Length: 156  Bit Score: 38.92  E-value: 1.93e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1390094401  53 VYVHYKGKLANGKKFDSSRDRNEPFIFSLGKGQVIKAWDIGVATMKKGEVCYLLCKPEYAYG 114
Cdd:PRK15095   11 VLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFG 72
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 318-425 1.94e-03

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 40.16  E-value: 1.94e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDQDNEKGLYRRGEARLLMNEFELAKCDFQKVLEVNPQNKAARSQISICQKK 397
Cdd:PLN03088   37 ELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEK 116

                          90       100
                  ....*....|....*....|....*...
gi 1390094401 398 TKEhnERDRRIYANMFAKFAERDAKEAA 425
Cdd:PLN03088  117 IAE--EEKDLVQPVPSDLPSSVTAPPVE 142
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 335-390 2.43e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 38.06  E-value: 2.43e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1390094401 335 KAVECCDKALGLDQDNEKGLYRRGEARLLMNEFELAKCDFQKVLEVNPQNKAARSQ 390
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLD 56
TPR_1 pfam00515
Tetratricopeptide repeat;
352-384 2.98e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.09  E-value: 2.98e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1390094401 352 KGLYRRGEARLLMNEFELAKCDFQKVLEVNPQN 384
Cdd:pfam00515   2 KALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_12 pfam13424
Tetratricopeptide repeat;
315-383 4.86e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 35.83  E-value: 4.86e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1390094401 315 FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDQDNEKG--------LYRRGEARLLMNEFELAKCDFQKVLEVNPQ 383
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPdhpltattLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_7 pfam13176
Tetratricopeptide repeat;
319-351 5.46e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 34.44  E-value: 5.46e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1390094401 319 AFLNLAMCYLKLREYTKAVECCDKALGLDQDNE 351
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPY 33
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 315-391 6.84e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 38.17  E-value: 6.84e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1390094401 315 FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDQDNEKGLYRRGEARLLMNEFELAKCDFQKVLEVNPQNKAARSQI 391
Cdd:COG2956     6 AAALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLEL 82
TPR_8 pfam13181
Tetratricopeptide repeat;
319-349 7.13e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 33.91  E-value: 7.13e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1390094401 319 AFLNLAMCYLKLREYTKAVECCDKALGLDQD 349
Cdd:pfam13181   3 AYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 281-400 8.11e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 38.53  E-value: 8.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1390094401 281 EGKYLQAVIQYGKIVSWLEMEYGLSEKESKASDSFLLAAFLN-------LAMCYLKL--REYTKAVECCDKALGLDQDNE 351
Cdd:TIGR02917 114 PGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDprslyakLGLAQLALaeNRFDEARALIDEVLTADPGNV 193

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1390094401 352 KGLYRRGEARLLMNEFELAKCDFQKVLEVNPQNKA---ARSQISICQKKTKE 400
Cdd:TIGR02917 194 DALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAvllALATILIEAGEFEE 245
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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