NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1488403125|ref|XP_026581553|]
View 

feather keratin B-4-like [Pseudonaja textilis]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Keratin super family cl03583
Keratin; This family represents avian keratin proteins, found in feathers, scale and claw.
 58-107 1.26e-04

Keratin; This family represents avian keratin proteins, found in feathers, scale and claw.


The actual alignment was detected with superfamily member pfam02422:

Pssm-ID: 460553  Cd Length: 81  Bit Score: 38.18  E-value: 1.26e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1488403125  58 CINQIPPSEVTIQPPACVVTIPGPILSASCDPVAVGGNSPCAPAGSFGQG 107
Cdd:pfam02422  25 CVRQCPDSTVVIQPPPVVVTFPGPILSSFPQNSVVGSSGSAAVGGSLGYG 74
 
Name Accession Description Interval E-value
Keratin pfam02422
Keratin; This family represents avian keratin proteins, found in feathers, scale and claw.
 58-107 1.26e-04

Keratin; This family represents avian keratin proteins, found in feathers, scale and claw.


Pssm-ID: 460553  Cd Length: 81  Bit Score: 38.18  E-value: 1.26e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1488403125  58 CINQIPPSEVTIQPPACVVTIPGPILSASCDPVAVGGNSPCAPAGSFGQG 107
Cdd:pfam02422  25 CVRQCPDSTVVIQPPPVVVTFPGPILSSFPQNSVVGSSGSAAVGGSLGYG 74
 
Name Accession Description Interval E-value
Keratin pfam02422
Keratin; This family represents avian keratin proteins, found in feathers, scale and claw.
 58-107 1.26e-04

Keratin; This family represents avian keratin proteins, found in feathers, scale and claw.


Pssm-ID: 460553  Cd Length: 81  Bit Score: 38.18  E-value: 1.26e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1488403125  58 CINQIPPSEVTIQPPACVVTIPGPILSASCDPVAVGGNSPCAPAGSFGQG 107
Cdd:pfam02422  25 CVRQCPDSTVVIQPPPVVVTFPGPILSSFPQNSVVGSSGSAAVGGSLGYG 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH