|
Name |
Accession |
Description |
Interval |
E-value |
| ATAD3_N |
pfam12037 |
ATPase family AAA domain-containing protein 3, N-terminal; This is the conserved N-terminal ... |
35-280 |
6.24e-137 |
|
ATPase family AAA domain-containing protein 3, N-terminal; This is the conserved N-terminal domain of ATPase family AAA domain-containing protein 3 (ATAD3) which is involved in dimerization and interacts with the inner surface of the outer mitochondrial membrane. This domain is found associated with the AAA ATPase domain (pfam00004). ATAD3 is essential for mitochondrial network organization, mitochondrial metabolism and cell growth at organizm and cellular level. It may also play an important role in mitochondrial protein synthesis.
Pssm-ID: 463442 [Multi-domain] Cd Length: 264 Bit Score: 412.45 E-value: 6.24e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 35 DKPKDKWSNFDPTGLERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERRKTLN 114
Cdd:pfam12037 14 DKPRTAYSGFDPEALERAAKAARELESSPHAKKALELMKKQEQTRQAELQAKIKEYEAAQEQLKIERQRVEYEERRKTLQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 115 EETKQHQARAQYQDKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMR-----KATIEHEMELRHKNELLRIEAESKA 189
Cdd:pfam12037 94 EETKQKQQRAQYQDELARKRYQDQLEAQRRRNEELLRKQEESVAKQEAMRiqaqrRQTEEHEAELRRETERAKAEAEAEA 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 190 RARVERENADIIREQIRLKAAEHRQTVLESIKTAGAVFGEGFRAFVSDWDKVTATVAGLTLLAVGVYSARNATGVAGRYI 269
Cdd:pfam12037 174 RAKEERENEDLNLEQLREKANEERETVLESINTAGSHIGGGLRALLTDWDKLVAAVGGLTALAAGVYTAKEGTGVAWRYI 253
|
250
....*....|.
gi 1712965697 270 EARLGKPSLVR 280
Cdd:pfam12037 254 EARLGKPSLVR 264
|
|
| RecA-like_ATAD3-like |
cd19512 |
ATPase domains of ATPase AAA-domain protein 3A (ATAD3A), -3B, and -3C, and similar ATPase ... |
318-467 |
1.79e-107 |
|
ATPase domains of ATPase AAA-domain protein 3A (ATAD3A), -3B, and -3C, and similar ATPase domains; ATPase AAA-domain protein 3 (ATAD3) is a ubiquitously expressed mitochondrial protein involved in mitochondrial dynamics, DNA-nucleoid structural organization, cholesterol transport and steroidogenesis. The ATAD3 gene family in human comprises three paralog genes: ATAD3A, ATAD3B and ATAD3C. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410920 [Multi-domain] Cd Length: 150 Bit Score: 330.64 E-value: 1.79e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 318 LEERVRDVAIATRNTRQNNGLYRNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMGRDGVTAMHKVFDWANTSR 397
Cdd:cd19512 1 LEARVRDIAIATRNTKKNKGLYRNILFYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVAPMGREGVTAIHKVFDWANTSR 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 398 RGLLLFVDEADAFLRKRSTEKISEDLRATLNAFLYRTGEQSNKFMLVLASNQPEQFDWAINDRIDEIVNF 467
Cdd:cd19512 81 RGLLLFVDEADAFLRKRSTEKISEDLRAALNAFLYRTGEQSNKFMLVLASNQPEQFDWAINDRIDEMVEF 150
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
318-467 |
1.11e-37 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 138.57 E-value: 1.11e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 318 LEERVRDVAIATRNTRQNNGLYRNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMGR-DGVTAMHKVFDWANTS 396
Cdd:cd19481 5 LREAVEAPRRGSRLRRYGLGLPKGILLYGPPGTGKTLLAKALAGELGLPLIVVKLSSLLSKYVgESEKNLRKIFERARRL 84
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1712965697 397 RRGLLLFvDEADAFLRKRSTEKISEDLRATLNAFLYRT--GEQSNKFMLVLASNQPEQFDWAIND--RIDEIVNF 467
Cdd:cd19481 85 APCILFI-DEIDAIGRKRDSSGESGELRRVLNQLLTELdgVNSRSKVLVIAATNRPDLLDPALLRpgRFDEVIEF 158
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
309-563 |
1.28e-29 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 118.45 E-value: 1.28e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 309 LEGVVLSPTLEERVRDVaiaTRNTRQNNGLY-------RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVapMGR- 380
Cdd:COG1223 1 LDDVVGQEEAKKKLKLI---IKELRRRENLRkfglwppRKILFYGPPGTGKTMLAEALAGELKLPLLTVRLDSL--IGSy 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 381 --DGVTAMHKVFDWANtsRRGLLLFVDEADAFLRKRSTEKISEDLRATLNAFLYRTGEQSNKFMLVLASNQPEQFDWAIN 458
Cdd:COG1223 76 lgETARNLRKLFDFAR--RAPCVIFFDEFDAIAKDRGDQNDVGEVKRVVNALLQELDGLPSGSVVIAATNHPELLDSALW 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 459 DRIDEIVNFALPGPDERDRLVRLYFDKYVLEpatggrqrmklaqFDYIAKcsEIAKRTEGMSGREISKLGVAWQAAAYSS 538
Cdd:COG1223 154 RRFDEVIEFPLPDKEERKEILELNLKKFPLP-------------FELDLK--KLAKKLEGLSGADIEKVLKTALKKAILE 218
|
250 260
....*....|....*....|....*
gi 1712965697 539 EDGVLTEAMIDArvddAVKQHRQKM 563
Cdd:COG1223 219 DREKVTKEDLEE----ALKQRKERK 239
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
154-558 |
9.27e-29 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 120.02 E-value: 9.27e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 154 EESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVERENADIIREQIRLKAAEHRQTVLESIKTAGAVFGEGFRA 233
Cdd:COG0464 4 LLALAVALALALLLLDDAALRLLLLLLLALAAALLLLLLLLLLLLLALLLVELLLLLLSGALAALLLLALLLLALLALLA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 234 FVSDWDKVTATVAGLTLLAVGVYSARNATGVAGRYIEARLGKPSLVRETSRFTVGEAIKHPVKTVKRLKSkpqDALEGVV 313
Cdd:COG0464 84 ALLSALELLLLGELLLLLLLLLLLLLLLLDLERALLELLRESAEALALAAPLVTYEDIGGLEEELLELRE---AILDDLG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 314 LSPTLEERVRDVAIATRN---TRQNNGLY--RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVapMGRD-GVTA-- 385
Cdd:COG0464 161 GLEEVKEELRELVALPLKrpeLREEYGLPppRGLLLYGPPGTGKTLLARALAGELGLPLIEVDLSDL--VSKYvGETEkn 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 386 MHKVFDWANTSRRGLLLFvDEADAFLRKRSTEKiSEDLRATLNAFLYRTGEQSNKFMLVLASNQPEQFDWAINDRIDEIV 465
Cdd:COG0464 239 LREVFDKARGLAPCVLFI-DEADALAGKRGEVG-DGVGRRVVNTLLTEMEELRSDVVVIAATNRPDLLDPALLRRFDEII 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 466 NFALPGPDERDRLVRLYFDKYVLEPAtggrqrmklaqfdyiAKCSEIAKRTEGMSGREISKLGV-AWQAAAYSSEDGVLT 544
Cdd:COG0464 317 FFPLPDAEERLEIFRIHLRKRPLDED---------------VDLEELAEATEGLSGADIRNVVRrAALQALRLGREPVTT 381
|
410
....*....|....*.
gi 1712965697 545 EAMIDA--RVDDAVKQ 558
Cdd:COG0464 382 EDLLEAleREDIFLKR 397
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
342-467 |
4.24e-22 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 93.04 E-value: 4.24e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 342 ILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMGR-DGVTAMHKVFDWANTSRRGlLLFVDEADAFLRKRSTEKIS 420
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVgESEKRLRELFEAAKKLAPC-VIFIDEIDALAGSRGSGGDS 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1712965697 421 EDLRaTLNAFLYRT-GEQSN--KFMLVLASNQPEQFDWAINDRIDEIVNF 467
Cdd:pfam00004 80 ESRR-VVNQLLTELdGFTSSnsKVIVIAATNRPDKLDPALLGRFDRIIEF 128
|
|
| RPT1 |
COG1222 |
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ... |
342-564 |
3.88e-21 |
|
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440835 [Multi-domain] Cd Length: 326 Bit Score: 95.84 E-value: 3.88e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 342 ILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPM--GrDGVTAMHKVFDWANTSRRGLLLFvDEADAFLRKRSTEKI 419
Cdd:COG1222 115 VLLYGPPGTGKTLLAKAVAGELGAPFIRVRGSELVSKyiG-EGARNVREVFELAREKAPSIIFI-DEIDAIAARRTDDGT 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 420 SEDLRATLNAFLYRT-GEQSNKFMLVL-ASNQPEQFDWAI--NDRIDEIVNFALPGPDERDRLVRLYfdkyvlepatggR 495
Cdd:COG1222 193 SGEVQRTVNQLLAELdGFESRGDVLIIaATNRPDLLDPALlrPGRFDRVIEVPLPDEEAREEILKIH------------L 260
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 496 QRMKLA-QFDYiakcSEIAKRTEGMSGREISKlgVAWQAAAYSSEDGVLTEAMIDarVDDAVKQHRQKMD 564
Cdd:COG1222 261 RDMPLAdDVDL----DKLAKLTEGFSGADLKA--IVTEAGMFAIREGRDTVTMED--LEKAIEKVKKKTE 322
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
808-979 |
1.16e-14 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 78.93 E-value: 1.16e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 808 VTPPpsAEAPLAEDVAAPVVEVTPPpsaeapLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVA 887
Cdd:PRK10811 847 VVRP--QDVQVEEQREAEEVQVQPV------VAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPE 918
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 888 PVIE-VTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVaAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLA 966
Cdd:PRK10811 919 VIAApVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADI-EEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAV 997
|
170
....*....|...
gi 1712965697 967 EDVAAPVVEVTPP 979
Cdd:PRK10811 998 EPEVAPAQVPEAT 1010
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
782-961 |
2.58e-14 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 77.77 E-value: 2.58e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 782 APVVEVTPPPSAEAP--LAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLA----EDVAAPVVEvtpPPS 855
Cdd:PRK10811 853 VQVEEQREAEEVQVQpvVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVEtthpEVIAAPVTE---QPQ 929
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 856 AEAPLAEDVAAPVVEVTPPPSAEPPLAEDvVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVT 935
Cdd:PRK10811 930 VITESDVAVAQEVAEHAEPVVEPQDETAD-IEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPE 1008
|
170 180
....*....|....*....|....*....
gi 1712965697 936 PPPS---AEAPLAEdvaAPVVEVTPPPSV 961
Cdd:PRK10811 1009 ATVEhnhATAPMTR---APAPEYVPEAPR 1034
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
787-980 |
3.89e-14 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 77.39 E-value: 3.89e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 787 VTPPpsAEAPLAEDVAAPVVEVTPPpsaeapLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLA----E 862
Cdd:PRK10811 847 VVRP--QDVQVEEQREAEEVQVQPV------VAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVEtthpE 918
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 863 DVAAPVVEvtpppsaEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEA 942
Cdd:PRK10811 919 VIAAPVTE-------QPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEV 991
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1712965697 943 PlAEDVAAPVVEvtPPPSVEAPLAEDVA------APVVEVTPPP 980
Cdd:PRK10811 992 E-TVTAVEPEVA--PAQVPEATVEHNHAtapmtrAPAPEYVPEA 1032
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
731-917 |
1.33e-13 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 75.46 E-value: 1.33e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 731 PVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSEEAAAAAPLVQDVIAPVVEVTPPPSAEAPLA----EDVAAPVV 806
Cdd:PRK10811 846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVEtthpEVIAAPVT 925
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 807 EvtpPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVaAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVV 886
Cdd:PRK10811 926 E---QPQVITESDVAVAQEVAEHAEPVVEPQDETADI-EEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEV 1001
|
170 180 190
....*....|....*....|....*....|.
gi 1712965697 887 APVIEVTPPPSAEVPLAEDVAAPVVEVTPPP 917
Cdd:PRK10811 1002 APAQVPEATVEHNHATAPMTRAPAPEYVPEA 1032
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
750-938 |
1.25e-12 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 72.38 E-value: 1.25e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 750 PLVQDVIAPVVEVtpPPSEEAAAAAPLVQDVIAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLA----EDVAAP 825
Cdd:PRK10811 846 PVVRPQDVQVEEQ--REAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVEtthpEVIAAP 923
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 826 VVEvtpPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAaPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEvplaED 905
Cdd:PRK10811 924 VTE---QPQVITESDVAVAQEVAEHAEPVVEPQDETADIE-EAAETAEVVVAEPEVVAQPAAPVVAEVAAEVET----VT 995
|
170 180 190
....*....|....*....|....*....|....*....
gi 1712965697 906 VAAPVVEvtPPPSAEAPLAEDVA------APVVEVTPPP 938
Cdd:PRK10811 996 AVEPEVA--PAQVPEATVEHNHAtapmtrAPAPEYVPEA 1032
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
859-1032 |
5.76e-12 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 70.07 E-value: 5.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 859 PLAEDVAAPVVEVTPPP--SAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLA----EDVAAPVV 932
Cdd:PRK10811 846 PVVRPQDVQVEEQREAEevQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVEtthpEVIAAPVT 925
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 933 EVTPP-PSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPPsaevkctlsdgldsdntVKAEPASETEHLAQ 1011
Cdd:PRK10811 926 EQPQViTESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPE-----------------VVAQPAAPVVAEVA 988
|
170 180
....*....|....*....|.
gi 1712965697 1012 PAASAETEAKMKKEDKTVSPP 1032
Cdd:PRK10811 989 AEVETVTAVEPEVAPAQVPEA 1009
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
681-869 |
8.30e-12 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 69.68 E-value: 8.30e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 681 VEVTPPPSEEAVAAAPLVQDVITPVVEVTPPPSEEAVAAaaaplVQDVIAPVVEVTPPPSEEAVAAAAAPLVqdVIAPVV 760
Cdd:PRK10811 853 VQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAV-----AEVVEEPVVVAEPQPEEVVVVETTHPEV--IAAPVT 925
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 761 EVTPPPSEEAAAAAPLVQDVIAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPla 840
Cdd:PRK10811 926 EQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAP-- 1003
|
170 180 190
....*....|....*....|....*....|.
gi 1712965697 841 EDVAAPVVE--VTPPPSAEAPLAEDVAAPVV 869
Cdd:PRK10811 1004 AQVPEATVEhnHATAPMTRAPAPEYVPEAPR 1034
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
339-469 |
3.24e-11 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 62.55 E-value: 3.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 339 YRNILMYGPPGTGKTLFAKKLAMHSG--------MDYAIMTGGDVapMGRDGVTAMHKVFDWANTSRRGLLLFVDEADAF 410
Cdd:cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFrpgapflyLNASDLLEGLV--VAELFGHFLVRLLFELAEKAKPGVLFIDEIDSL 96
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1712965697 411 lrkrsTEKISEDLRATLNAFLYRTGEQSNkFMLVLASNQPE--QFDWAINDRIDEIVNFAL 469
Cdd:cd00009 97 -----SRGAQNALLRVLETLNDLRIDREN-VRVIGATNRPLlgDLDRALYDRLDIRIVIPL 151
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
829-984 |
3.31e-11 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 67.76 E-value: 3.31e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 829 VTPPpsAEAPLAEDVAAPVVEVTPPpsaeapLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLA----E 904
Cdd:PRK10811 847 VVRP--QDVQVEEQREAEEVQVQPV------VAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVEtthpE 918
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 905 DVAAPVVEvtpppsaEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPPSAEV 984
Cdd:PRK10811 919 VIAAPVTE-------QPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEV 991
|
|
| PTZ00436 |
PTZ00436 |
60S ribosomal protein L19-like protein; Provisional |
823-952 |
4.34e-11 |
|
60S ribosomal protein L19-like protein; Provisional
Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 65.74 E-value: 4.34e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 823 AAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPL 902
Cdd:PTZ00436 220 AAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAP 299
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1712965697 903 AEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPV 952
Cdd:PTZ00436 300 AKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAAPV 349
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
790-923 |
7.02e-11 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 66.28 E-value: 7.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 790 PPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEdvAAPVV 869
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAP--AAAPA 443
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1712965697 870 EVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPlAEDVAAPVVEVTPPPSAEAPL 923
Cdd:PRK14951 444 AVALAPAPPAQAAPETVAIPVRVAPEPAVASA-APAPAAAPAAARLTPTEEGDV 496
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
780-983 |
7.40e-11 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 66.44 E-value: 7.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 780 VIAPVVEVTPPPSAEAPLAedvAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAP 859
Cdd:PRK12323 389 AAAPAAAAPAPAAPPAAPA---AAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPA 465
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 860 LAEDVAAPVVEVTPPPSAEPPLAEdvvAPVIEvTPPPSAEVPlaEDVAAPvvevTPPPSAEAPLAEDVAAPVVEVTPPPS 939
Cdd:PRK12323 466 AAGPRPVAAAAAAAPARAAPAAAP---APADD-DPPPWEELP--PEFASP----APAQPDAAPAGWVAESIPDPATADPD 535
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1712965697 940 AEAPLAEdvaapvvevTPPPSVEAPLAEDVAAPVVEVTPPPSAE 983
Cdd:PRK12323 536 DAFETLA---------PAPAAAPAPRAAAATEPVVAPRPPRASA 570
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
639-1031 |
9.74e-11 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 66.50 E-value: 9.74e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 639 PPPSVEAAAPQAqDVATPIAEVTPPPSVEVEPPLVPDVIAPIVEVTPPPSEEAVAAAPLVQDVITPVV-----------E 707
Cdd:PHA03247 2592 PPQSARPRAPVD-DRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPgrvsrprrarrL 2670
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 708 VTPPPSEEAVAAAAAPLVQDVIAPVVEVT-PPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSEEaaaaaplvqdviAPVVE 786
Cdd:PHA03247 2671 GRAAQASSPPQRPRRRAARPTVGSLTSLAdPPPPPPTPEPAPHALVSATPLPPGPAAARQASP------------ALPAA 2738
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 787 VTPPPSAEAPlaedvAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAA 866
Cdd:PHA03247 2739 PAPPAVPAGP-----ATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLA 2813
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 867 PVVEVTPPPSAEPPLaedvvapvievtPPPSAEVPlaedvAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAE 946
Cdd:PHA03247 2814 PAAALPPAASPAGPL------------PPPTSAQP-----TAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPA 2876
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 947 DVAAPVVEVTPPPSVEAPlAEDVAAPVVEVTPPPSAEVKCTLSDGLDSDNTVKAEPASETEHLAQPAASAETEAKMKKED 1026
Cdd:PHA03247 2877 APARPPVRRLARPAVSRS-TESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEP 2955
|
....*
gi 1712965697 1027 KTVSP 1031
Cdd:PHA03247 2956 SGAVP 2960
|
|
| PTZ00436 |
PTZ00436 |
60S ribosomal protein L19-like protein; Provisional |
844-973 |
1.11e-10 |
|
60S ribosomal protein L19-like protein; Provisional
Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 64.59 E-value: 1.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 844 AAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPL 923
Cdd:PTZ00436 220 AAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAP 299
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1712965697 924 AEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPV 973
Cdd:PTZ00436 300 AKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAAPV 349
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
811-944 |
1.17e-10 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 65.51 E-value: 1.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 811 PPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlaedvAAPVVEVTPPPSAEPPLAEDVVAP-- 888
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAP-----AAPPAAAPPAPVAAPAAAAPAAAPaa 440
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1712965697 889 -VIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPlAEDVAAPVVEVTPPPSAEAPL 944
Cdd:PRK14951 441 aPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASA-APAPAAAPAAARLTPTEEGDV 496
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
757-966 |
1.28e-10 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 65.67 E-value: 1.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 757 APVVEVTPPPSEEAAAaaplvqdVIAPVVEVTPPPSAEAPLAedvAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAE 836
Cdd:PRK12323 373 GPATAAAAPVAQPAPA-------AAAPAAAAPAPAAPPAAPA---AAPAAAAAARAVAAAPARRSPAPEALAAARQASAR 442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 837 APLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEP---PLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEV 913
Cdd:PRK12323 443 GPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPaaaPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWV 522
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1712965697 914 TPPPSAEAPLAEDVAAPVVEVtPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLA 966
Cdd:PRK12323 523 AESIPDPATADPDDAFETLAP-APAAAPAPRAAAATEPVVAPRPPRASASGLP 574
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
832-967 |
2.70e-10 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 64.35 E-value: 2.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 832 PPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPlaedvVAPVIEVTPPPSAEVPLAEDVAAP-- 909
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAP-----AAPPAAAPPAPVAAPAAAAPAAAPaa 440
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1712965697 910 -VVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVvevtPPPSVEAPLAE 967
Cdd:PRK14951 441 aPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPA----AARLTPTEEGD 495
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
828-1037 |
3.28e-10 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 64.13 E-value: 3.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 828 EVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVA 907
Cdd:PRK12323 371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAP 450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 908 APVVEVTPPPSAEAPLAEdVAAPVVEVTPPPSAEAPLAEDVAAPVvevTPPPSVEAPLAEDVAAPVVEVTPPPSAEVKCT 987
Cdd:PRK12323 451 APAPAAAPAAAARPAAAG-PRPVAAAAAAAPARAAPAAAPAPADD---DPPPWEELPPEFASPAPAQPDAAPAGWVAESI 526
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1712965697 988 LSDGldsdnTVKAEPASETEHLAQPAASAETEAKMKKEDKTVSPPKDGTP 1037
Cdd:PRK12323 527 PDPA-----TADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASAS 571
|
|
| hflB |
PRK10733 |
ATP-dependent zinc metalloprotease FtsH; |
248-574 |
4.17e-10 |
|
ATP-dependent zinc metalloprotease FtsH;
Pssm-ID: 182683 [Multi-domain] Cd Length: 644 Bit Score: 63.90 E-value: 4.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 248 LTLLAVGVYSARNATGVAGRyiearlGKPSLVRETSRFTVGEAIKHPVKTVKRLKSKPQDALEgvvlsptLEERVRDvai 327
Cdd:PRK10733 110 LLLIGVWIFFMRQMQGGGGK------GAMSFGKSKARMLTEDQIKTTFADVAGCDEAKEEVAE-------LVEYLRE--- 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 328 ATRNTRQNNGLYRNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMGRD-GVTAMHKVFDWANTSRRgLLLFVDE 406
Cdd:PRK10733 174 PSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGvGASRVRDMFEQAKKAAP-CIIFIDE 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 407 ADAFLRKRST--EKISEDLRATLNAFLYRT-GEQSNKFMLVL-ASNQPEQFDWAI--NDRIDEIVNFALPGPDERDRLVR 480
Cdd:PRK10733 253 IDAVGRQRGAglGGGHDEREQTLNQMLVEMdGFEGNEGIIVIaATNRPDVLDPALlrPGRFDRQVVVGLPDVRGREQILK 332
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 481 LYFDKYVLEPATggrqrmklaqfdyiaKCSEIAKRTEGMSGREISKLgvAWQAAAYSSEDGVLTEAMID---ARVDDAVK 557
Cdd:PRK10733 333 VHMRRVPLAPDI---------------DAAIIARGTPGFSGADLANL--VNEAALFAARGNKRVVSMVEfekAKDKIMMG 395
|
330
....*....|....*..
gi 1712965697 558 QHRQKMDWLHAEEEAQA 574
Cdd:PRK10733 396 AERRSMVMTEAQKESTA 412
|
|
| RecA-like_FtsH |
cd19501 |
ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc ... |
340-457 |
4.19e-10 |
|
ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. It is anchored to the cytoplasmic membrane such that the amino- and carboxy-termini are exposed to the cytoplasm. It presents a membrane-bound hexameric structure that is able to unfold and degrade protein substrates. It is comprised of an N-terminal transmembrane region and the larger C-terminal cytoplasmic region, which consists of an ATPase domain and a protease domain. This RecA-Like FTsH subfamily represents the ATPase domain, and belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410909 [Multi-domain] Cd Length: 171 Bit Score: 59.55 E-value: 4.19e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMgRDGVTAmHKVFDWANTSRRG--LLLFVDEADAFLRKRSTE 417
Cdd:cd19501 38 KGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGA-SRVRDLFEQAKKNapCIVFIDEIDAVGRKRGAG 115
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1712965697 418 KI-SEDLR-ATLNAFLYRT-GEQSNKFMLVL-ASNQPEQFDWAI 457
Cdd:cd19501 116 LGgGHDEReQTLNQLLVEMdGFESNTGVIVIaATNRPDVLDPAL 159
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
807-982 |
4.31e-10 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 63.74 E-value: 4.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 807 EVTPPPSAEAPLAEDVAAPVVE--VTPPPSaeAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAED 884
Cdd:PRK12323 371 GAGPATAAAAPVAQPAPAAAAPaaAAPAPA--APPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAP 448
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 885 VVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAE---APLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSV 961
Cdd:PRK12323 449 APAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAApaaAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPD 528
|
170 180
....*....|....*....|.
gi 1712965697 962 EAPLAEDVAAPVVEVTPPPSA 982
Cdd:PRK12323 529 PATADPDDAFETLAPAPAAAP 549
|
|
| PTZ00436 |
PTZ00436 |
60S ribosomal protein L19-like protein; Provisional |
782-898 |
5.09e-10 |
|
60S ribosomal protein L19-like protein; Provisional
Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 62.66 E-value: 5.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 782 APVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLA 861
Cdd:PTZ00436 228 APAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPA 307
|
90 100 110
....*....|....*....|....*....|....*..
gi 1712965697 862 EDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSA 898
Cdd:PTZ00436 308 KAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKA 344
|
|
| PTZ00436 |
PTZ00436 |
60S ribosomal protein L19-like protein; Provisional |
840-982 |
8.61e-10 |
|
60S ribosomal protein L19-like protein; Provisional
Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 61.89 E-value: 8.61e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 840 AEDVAAPVVEVTPPPSAEAPLAedvAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSA 919
Cdd:PTZ00436 205 AKKAAAPSGKKSAKAAAPAKAA---AAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKA 281
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1712965697 920 EAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPPSA 982
Cdd:PTZ00436 282 AAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKA 344
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
853-983 |
1.37e-09 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 62.04 E-value: 1.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 853 PPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEdvAAPVV 932
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAP--AAAPA 443
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1712965697 933 EVTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPlAEDVAAPVVEVTPPPSAE 983
Cdd:PRK14951 444 AVALAPAPPAQAAPETVAIPVRVAPEPAVASA-APAPAAAPAAARLTPTEE 493
|
|
| RecA-like_VPS4-like |
cd19509 |
ATPase domain of VPS4, ATAD1, K, KTNA1, Spastin, FIGL-1 and similar ATPase domains; This ... |
337-460 |
1.53e-09 |
|
ATPase domain of VPS4, ATAD1, K, KTNA1, Spastin, FIGL-1 and similar ATPase domains; This subfamily includes the ATPase domains of vacuolar protein sorting-associated protein 4 (VPS4), ATPase family AAA domain-containing protein 1 (ATAD1, also known as Thorase), Katanin p60 ATPase-containing subunit A1 (KTNA1), Spastin, and Fidgetin-Like 1 (FIGL-1). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410917 [Multi-domain] Cd Length: 163 Bit Score: 57.75 E-value: 1.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 337 GLYRNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVA--PMGrDGVTAMHKVFDWANtSRRGLLLFVDEADAFLRKR 414
Cdd:cd19509 30 GPPRGILLYGPPGTGKTLLARAVASESGSTFFSISASSLVskWVG-ESEKIVRALFALAR-ELQPSIIFIDEIDSLLSER 107
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1712965697 415 STEKiSEDLRATLNAFLYR----TGEQSNKFMLVLASNQPEQFDWAINDR 460
Cdd:cd19509 108 GSGE-HEASRRVKTEFLVQmdgvLNKPEDRVLVLGATNRPWELDEAFLRR 156
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
789-1012 |
2.75e-09 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 61.40 E-value: 2.75e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 789 PPPSAEAPLAEDVAAPVVEVtPPPSAEAPlaedvAAPVVEVTPPPSAEAPLAEDVAAPvveVTPPPSAEAPLAEDVAAPV 868
Cdd:PRK07003 405 AAGAALAPKAAAAAAATRAE-APPAAPAP-----PATADRGDDAADGDAPVPAKANAR---ASADSRCDERDAQPPADSG 475
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 869 VEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDV 948
Cdd:PRK07003 476 SASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDV 555
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 949 ----------------AAPVVEVTPPPSVEAPLAEDVAAPVvevtPPPSAEVKCTLSDGldsDNTVKAEPASETEHLAQP 1012
Cdd:PRK07003 556 lrnagmrvssdrgaraAAAAKPAAAPAAAPKPAAPRVAVQV----PTPRARAATGDAPP---NGAARAEQAAESRGAPPP 628
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
340-470 |
5.61e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 55.84 E-value: 5.61e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 340 RNILMYGPPGTGKTLFAKKLA------------------MHSGMDYAIMTGGDVAPMGRDGVTAMHKVFDWANTSRRGlL 401
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALArelgppgggviyidgediLEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPD-V 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 402 LFVDEADAFLRKRSTEKISEDLRATLNAFLyrtgEQSNKFMLVLASNQPEQFDWA-INDRIDEIVNFALP 470
Cdd:smart00382 82 LILDEITSLLDAEQEALLLLLEELRLLLLL----KSEKNLTVILTTNDEKDLGPAlLRRRFDRRIVLLLI 147
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
782-905 |
7.92e-09 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 59.73 E-value: 7.92e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 782 APVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEdvAAPVVEVTPPPSAEAPLA 861
Cdd:PRK14951 379 KTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAP--AAAPAAVALAPAPPAQAA 456
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1712965697 862 EDVAAPVVEVTPPPSAepplaedVVAPVIEVTPPPSAEVPLAED 905
Cdd:PRK14951 457 PETVAIPVRVAPEPAV-------ASAAPAPAAAPAAARLTPTEE 493
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
687-982 |
1.01e-08 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 59.48 E-value: 1.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 687 PSEEAVAAAPLVQDVITPVVEVTPPPSEEAVAAAAAPLVQDV-IAPVVEVTPPPSEEAVAAaaaPLVQDVIAPVVEVTPP 765
Cdd:PRK07003 381 PAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRaEAPPAAPAPPATADRGDD---AADGDAPVPAKANARA 457
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 766 PSEEAAAAAPlVQDVIAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAA 845
Cdd:PRK07003 458 SADSRCDERD-AQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPT 536
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 846 PVVEVTPPPSAEAPLAEDV----------------AAPVVEVTPPPSAEPPLAEDVVAPVievtPPPSAEVPLAEDvaap 909
Cdd:PRK07003 537 PAAAAPAARAGGAAAALDVlrnagmrvssdrgaraAAAAKPAAAPAAAPKPAAPRVAVQV----PTPRARAATGDA---- 608
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 910 vvevTPPPSAEAPLAEDV-AAPVVEVTPPPSAEAPL--------AEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPP 980
Cdd:PRK07003 609 ----PPNGAARAEQAAESrGAPPPWEDIPPDDYVPLsadegfggPDDGFVPVFDSGPDDVRVAPKPADAPAPPVDTRPLP 684
|
..
gi 1712965697 981 SA 982
Cdd:PRK07003 685 PA 686
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
880-1038 |
1.05e-08 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 59.67 E-value: 1.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 880 PLAEDVVAPVIEVTPPPSAEVP--LAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLA----EDVAAPVV 953
Cdd:PRK10811 846 PVVRPQDVQVEEQREAEEVQVQpvVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVEtthpEVIAAPVT 925
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 954 EVTPP-PSVEAPLAEDVAAPVVEVTPPPSAEVKCTlsdgldSDNTVKAEPASETEHLAQPAASAETEAKMKKEDKTVSPP 1032
Cdd:PRK10811 926 EQPQViTESDVAVAQEVAEHAEPVVEPQDETADIE------EAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEP 999
|
....*.
gi 1712965697 1033 KDGTPV 1038
Cdd:PRK10811 1000 EVAPAQ 1005
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
781-950 |
1.78e-08 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 58.34 E-value: 1.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 781 IAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlAEDVAAPVVEvtPPPSAEAPLAEDVAAPVVEVTPPPSAEAPL 860
Cdd:PRK07994 364 PLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVP-PPPASAPQQA--PAVPLPETTSQLLAARQQLQRAQGATKAKK 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 861 AEDVAAPVVEvtPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPP--PSAEAPLAEDVAAPvvEVTPPP 938
Cdd:PRK07994 441 SEPAAASRAR--PVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVatPKALKKALEHEKTP--ELAAKL 516
|
170
....*....|..
gi 1712965697 939 SAEAPLAEDVAA 950
Cdd:PRK07994 517 AAEAIERDPWAA 528
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
844-1020 |
1.82e-08 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 58.71 E-value: 1.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 844 AAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPlaedVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPL 923
Cdd:PRK07003 366 GAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAV----TGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDD 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 924 AEDVAAPV-----VEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPPSAEVKCTLSDGLDSDNTV 998
Cdd:PRK07003 442 AADGDAPVpakanARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDA 521
|
170 180
....*....|....*....|..
gi 1712965697 999 KAEPASETEHLAQPAASAETEA 1020
Cdd:PRK07003 522 PAAAAPPAPEARPPTPAAAAPA 543
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
823-983 |
1.87e-08 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 58.34 E-value: 1.87e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 823 AAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlAEDVAAPVVEvtPPPSAEPPLAEDVVAPVIEVTPPPSAEVPL 902
Cdd:PRK07994 364 PLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVP-PPPASAPQQA--PAVPLPETTSQLLAARQQLQRAQGATKAKK 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 903 AEDVAAPVVEvtPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAED---VAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPP 979
Cdd:PRK07994 441 SEPAAASRAR--PVNSALERLASVRPAPSALEKAPAKKEAYRWKAtnpVEVKKEPVATPKALKKALEHEKTPELAAKLAA 518
|
....
gi 1712965697 980 PSAE 983
Cdd:PRK07994 519 EAIE 522
|
|
| RecA-like_NVL_r2-like |
cd19530 |
second of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL ... |
342-457 |
2.12e-08 |
|
second of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL exists in two forms with N-terminal extensions of different lengths in mammalian cells. NVL has two alternatively spliced isoforms, a short form, NVL1, and a long form, NVL2. NVL2, the major species, is mainly present in the nucleolus, whereas NVL1 is nucleoplasmic. Each has an N-terminal domain, followed by two tandem ATPase domains; this subfamily includes the first of the two ATPase domains. NVL2 is involved in the biogenesis of the 60S ribosome subunit by associating specifically with ribosome protein L5 and modulating the function of DOB1. NVL2 is also required for telomerase assembly and the regulation of telomerase activity, and is involved in pre-rRNA processing. The role of NVL1 is unclear. This RecA-like_NVL_r1-like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410938 [Multi-domain] Cd Length: 161 Bit Score: 54.42 E-value: 2.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 342 ILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMG-RDGVTAMHKVFDWANTSRRGLLLFvDEADAFLRKRSTEKIS 420
Cdd:cd19530 33 VLLYGPPGCGKTLLAKAVANESGANFISVKGPELLNKYvGESERAVRQVFQRARASAPCVIFF-DEVDALVPKRGDGGSW 111
|
90 100 110
....*....|....*....|....*....|....*....
gi 1712965697 421 EDLRaTLNAFLYRT--GEQSNKFMLVLASNQPEQFDWAI 457
Cdd:cd19530 112 ASER-VVNQLLTEMdgLEERSNVFVIAATNRPDIIDPAM 149
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
802-971 |
2.82e-08 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 57.95 E-value: 2.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 802 AAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlAEDVAAPVVEvtPPPSAEAPLAEDVAAPVVEVTPPPSAEPPL 881
Cdd:PRK07994 364 PLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVP-PPPASAPQQA--PAVPLPETTSQLLAARQQLQRAQGATKAKK 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 882 AEDVVAPviEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPP--PSAEAPLAEDVAAPvvEVTPPP 959
Cdd:PRK07994 441 SEPAAAS--RARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVatPKALKKALEHEKTP--ELAAKL 516
|
170
....*....|..
gi 1712965697 960 SVEAPLAEDVAA 971
Cdd:PRK07994 517 AAEAIERDPWAA 528
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
641-1037 |
2.93e-08 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 58.41 E-value: 2.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 641 PSVEAAAPQAQDVATPIAEVTPPPSVEVEPPL------------------------------------------VPDVIA 678
Cdd:PHA03247 2489 PFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILpdepvgepvhprmltwirgleelasddagdpppplppaappaAPDRSV 2568
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 679 PIVEVTPPPSEEAVAAAPLVQDVitPVVEVTP-----PPSEEAVAAAAAPLVQDVIAPvvevTPPPSEEAVAAAAAPLVQ 753
Cdd:PHA03247 2569 PPPRPAPRPSEPAVTSRARRPDA--PPQSARPrapvdDRGDPRGPAPPSPLPPDTHAP----DPPPPSPSPAANEPDPHP 2642
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 754 DVIAPVVEVTPPPSEEA-AAAAPLVQDVIAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEaPLAEDVAAPVVEVTPP 832
Cdd:PHA03247 2643 PPTVPPPERPRDDPAPGrVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPP-PTPEPAPHALVSATPL 2721
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 833 PSAEAPLAEDVAAPVVEVTPPPSAEAPlaedvAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVE 912
Cdd:PHA03247 2722 PPGPAAARQASPALPAAPAPPAVPAGP-----ATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRE 2796
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 913 VTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAA-PVVEVTPPPSVEAPLA-EDVAAPVVEVT--PPPSAEVKctl 988
Cdd:PHA03247 2797 SLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAqPTAPPPPPGPPPPSLPlGGSVAPGGDVRrrPPSRSPAA--- 2873
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 1712965697 989 sdgldsdnTVKAEPASETEHLAQPAASAETEAKMKKEDKTVSPPKDGTP 1037
Cdd:PHA03247 2874 --------KPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAP 2914
|
|
| PRK03992 |
PRK03992 |
proteasome-activating nucleotidase; Provisional |
342-525 |
3.25e-08 |
|
proteasome-activating nucleotidase; Provisional
Pssm-ID: 179699 [Multi-domain] Cd Length: 389 Bit Score: 57.15 E-value: 3.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 342 ILMYGPPGTGKTLFAKKLAMHSGMDYAIMTG--------GDVAPMGRDgvtamhkVFDWANtSRRGLLLFVDEADAFLRK 413
Cdd:PRK03992 168 VLLYGPPGTGKTLLAKAVAHETNATFIRVVGselvqkfiGEGARLVRE-------LFELAR-EKAPSIIFIDEIDAIAAK 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 414 RSTEKISED---------LRATLNAFlyrtgEQSNKFMLVLASNQPEQFDWAI-----NDRIDEIvnfalPGPDERDRLV 479
Cdd:PRK03992 240 RTDSGTSGDrevqrtlmqLLAEMDGF-----DPRGNVKIIAATNRIDILDPAIlrpgrFDRIIEV-----PLPDEEGRLE 309
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1712965697 480 rlyfdkyVLEPATggrQRMKLAQ-FDYiakcSEIAKRTEGMSGREIS 525
Cdd:PRK03992 310 -------ILKIHT---RKMNLADdVDL----EELAELTEGASGADLK 342
|
|
| RecA-like_CDC48_r2-like |
cd19511 |
second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase ... |
340-457 |
3.25e-08 |
|
second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase domains; This subfamily includes the second of two ATPase domains of the molecular chaperone CDC48 in yeast and p97 or VCP in metazoans, Peroxisomal biogenesis factor 1 (PEX1) and -6 (PEX6), Valosin-containing protein-like ATPase (VAT), and nuclear VCP-like protein (NVL). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410919 [Multi-domain] Cd Length: 159 Bit Score: 53.83 E-value: 3.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPM--GrDGVTAMHKVFDWANTSRRGlLLFVDEADAFLRKRSTE 417
Cdd:cd19511 28 KGVLLYGPPGCGKTLLAKALASEAGLNFISVKGPELFSKyvG-ESERAVREIFQKARQAAPC-IIFFDEIDSLAPRRGQS 105
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1712965697 418 KISEDLRATLNAFLYRTG--EQSNKFMLVLASNQPEQFDWAI 457
Cdd:cd19511 106 DSSGVTDRVVSQLLTELDgiESLKGVVVIAATNRPDMIDPAL 147
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
50-271 |
3.29e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.02 E-value: 3.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 50 ERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERRKTLNEETKQHQARAQYQDK 129
Cdd:COG1196 351 EELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEAL 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 130 LARQRYEDQLRQQQI-LNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVERENADIIREQIRLK 208
Cdd:COG1196 431 AELEEEEEEEEEALEeAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGV 510
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1712965697 209 AAEHRQTVLESIKTAGAVfgegfrafVSDWDKVTATVAGLTLLAVGVYSARNATGVAGRYIEA 271
Cdd:COG1196 511 KAALLLAGLRGLAGAVAV--------LIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEY 565
|
|
| RecA-like_KTNA1 |
cd19522 |
Katanin p60 ATPase-containing subunit A1; Katanin p60 ATPase-containing subunit A1 (KTNA1) is ... |
339-463 |
3.30e-08 |
|
Katanin p60 ATPase-containing subunit A1; Katanin p60 ATPase-containing subunit A1 (KTNA1) is the catalytic subunit of the Katanin complex which is severs microtubules in an ATP-dependent manner, and is implicated in multiple aspects of microtubule dynamics. In addition to the p60 catalytic ATPase subunit, Katanin contains an accessory subunit (p80 or p80-like). The microtubule-severing activity of the ATPase is essential for female meiotic spindle assembly, and male gamete production; and the katanin complex severing microtubules is under tight regulation during the transition from the meiotic to mitotic stage to allow proper embryogenesis. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410930 [Multi-domain] Cd Length: 170 Bit Score: 54.22 E-value: 3.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 339 YRNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMGRDGVTAMHK-VFDWANTSRRGlLLFVDEADAFLRKRSTE 417
Cdd:cd19522 33 WKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRlLFEMARFYAPT-TIFIDEIDSICSRRGTS 111
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1712965697 418 KISEDLRATLNAFLYR--------TGEQSNKFMLVL-ASNQPEQFDWAINDRIDE 463
Cdd:cd19522 112 EEHEASRRVKSELLVQmdgvggasENDDPSKMVMVLaATNFPWDIDEALRRRLEK 166
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
789-972 |
3.42e-08 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 57.55 E-value: 3.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 789 PPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPsaeAPLAEDVAAPV 868
Cdd:PRK07003 360 PAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEA---PPAAPAPPATA 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 869 VEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEvplAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDV 948
Cdd:PRK07003 437 DRGDDAADGDAPVPAKANARASADSRCDERD---AQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAP 513
|
170 180
....*....|....*....|....
gi 1712965697 949 AAPVVEVTPPPSVEAPLAEDVAAP 972
Cdd:PRK07003 514 AAASREDAPAAAAPPAPEARPPTP 537
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
50-219 |
4.50e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.25 E-value: 4.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 50 ERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERRKTLNEETKQHQARAQYQDK 129
Cdd:COG1196 253 AELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEEL 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 130 LARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVERENaDIIREQIRLKA 209
Cdd:COG1196 333 EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAA-QLEELEEAEEA 411
|
170
....*....|
gi 1712965697 210 AEHRQTVLES 219
Cdd:COG1196 412 LLERLERLEE 421
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
631-854 |
4.75e-08 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 57.36 E-value: 4.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 631 ITQVLEAMPPPSVEAAAPQAQDVatpIAEVTPPPSVEVEPPLVPDVIAPIVEVTPPPSEEAVAAAPLVQDVITPVVEVTP 710
Cdd:PRK10811 847 VVRPQDVQVEEQREAEEVQVQPV---VAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAP 923
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 711 PPSEEavaaaaaPLVQDVIAPVVEVTPPPSEeavaaaaaplvqdviaPVVEVTPPPSEeaaaaaplvqdvIAPVVEVTPP 790
Cdd:PRK10811 924 VTEQP-------QVITESDVAVAQEVAEHAE----------------PVVEPQDETAD------------IEEAAETAEV 968
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1712965697 791 PSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPS---AEAPLAEdvaAPVVEVTPPP 854
Cdd:PRK10811 969 VVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEhnhATAPMTR---APAPEYVPEA 1032
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
50-214 |
5.66e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.25 E-value: 5.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 50 ERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEH-QSKIKEYEAAVEQLKG--DQIRIQGEERRKTLNEETKQhQARAQY 126
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELEELEAELEElEAELAELEAELEELRLelEELELELEEAQAEEYELLAE-LARLEQ 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 127 QDKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNEL-LRIEAESKARARVERENADIIREQI 205
Cdd:COG1196 303 DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAeAELAEAEEALLEAEAELAEAEEELE 382
|
....*....
gi 1712965697 206 RLKAAEHRQ 214
Cdd:COG1196 383 ELAEELLEA 391
|
|
| RecA-like_PAN_like |
cd19502 |
proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily ... |
340-467 |
6.05e-08 |
|
proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily contains ATPase subunits of the eukaryotic 26S proteasome, and of the archaeal proteasome which carry out ATP-dependent degradation of substrates of the ubiquitin-proteasome pathway. The eukaryotic 26S proteasome consists of a proteolytic 20S core particle (CP), and a 19S regulatory particle (RP) which provides the ATP-dependence and the specificity for ubiquitinated proteins. In the archaea the RP is a homohexameric complex of proteasome-activating nucleotidase (PAN). This subfamily also includes various eukaryotic 26S subunits including, proteasome 26S subunit, ATPase 2 (PSMC2, also known as S7 and MSS1) which is a member of the 19S RP and has a chaperone like activity; and proteasome 20S subunit alpha 6 (PSMA6, also known as IOTA, p27K, and PROS27) which is a member of the 20S CP. This RecA-like_PAN subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410910 [Multi-domain] Cd Length: 171 Bit Score: 53.50 E-value: 6.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGD-VAPMGRDGVTAMHKVFDWANTsRRGLLLFVDEADAFLRKRSTEK 418
Cdd:cd19502 38 KGVLLYGPPGTGKTLLAKAVANHTDATFIRVVGSElVQKYIGEGARLVRELFEMARE-KAPSIIFIDEIDAIGAKRFDSG 116
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 419 ISED---------LRATLNAFlyrtgEQSNKFMLVLASNQPEQFDWAI--NDRIDEIVNF 467
Cdd:cd19502 117 TGGDrevqrtmleLLNQLDGF-----DPRGNIKVIMATNRPDILDPALlrPGRFDRKIEF 171
|
|
| RecA-like_VPS4 |
cd19521 |
ATPase domain of vacuolar protein sorting-associated protein 4; Vacuolar protein ... |
339-463 |
6.30e-08 |
|
ATPase domain of vacuolar protein sorting-associated protein 4; Vacuolar protein sorting-associated protein 4 (Vps4) is believed to be involved in intracellular protein transport out of a prevacuolar endosomal compartment. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410929 [Multi-domain] Cd Length: 170 Bit Score: 53.33 E-value: 6.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 339 YRNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAP--MGrDGVTAMHKVFDWANTSRRGlLLFVDEADAFLRKRSt 416
Cdd:cd19521 40 WSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSkwMG-ESEKLVKQLFAMARENKPS-IIFIDEVDSLCGTRG- 116
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1712965697 417 EKISEDLRATLNAFLYR---TGEQSNKFMLVLASNQPEQFDWAINDRIDE 463
Cdd:cd19521 117 EGESEASRRIKTELLVQmngVGNDSQGVLVLGATNIPWQLDSAIRRRFEK 166
|
|
| CDC48 |
TIGR01243 |
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two ... |
340-527 |
8.39e-08 |
|
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Pssm-ID: 273521 [Multi-domain] Cd Length: 733 Bit Score: 56.45 E-value: 8.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDV-APMGRDGVTAMHKVFDWANTSRRGlLLFVDEADAFLRKRSTEK 418
Cdd:TIGR01243 488 KGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEIlSKWVGESEKAIREIFRKARQAAPA-IIFFDEIDAIAPARGARF 566
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 419 ISEDLRATLNAFLYRT-GEQSNKFMLVL-ASNQPEQFDWAI--NDRIDEIVnfALPGPDERDRlvrlyFDKYVLEPatgg 494
Cdd:TIGR01243 567 DTSVTDRIVNQLLTEMdGIQELSNVVVIaATNRPDILDPALlrPGRFDRLI--LVPPPDEEAR-----KEIFKIHT---- 635
|
170 180 190
....*....|....*....|....*....|...
gi 1712965697 495 rQRMKLAQfdyIAKCSEIAKRTEGMSGREISKL 527
Cdd:TIGR01243 636 -RSMPLAE---DVDLEELAEMTEGYTGADIEAV 664
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
50-221 |
1.27e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.30 E-value: 1.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 50 ERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLK--GDQIRIQGEERRKTLNEETKQHQARAQYQ 127
Cdd:PTZ00121 1441 EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKkkAEEAKKKADEAKKAAEAKKKADEAKKAEE 1520
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 128 DKLARQ-------RYEDQLRQ-QQILNEENLRKQEEsVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVERENAD 199
Cdd:PTZ00121 1521 AKKADEakkaeeaKKADEAKKaEEKKKADELKKAEE-LKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMK 1599
|
170 180
....*....|....*....|..
gi 1712965697 200 IIREQIRLKAAEHRQTVLESIK 221
Cdd:PTZ00121 1600 LYEEEKKMKAEEAKKAEEAKIK 1621
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
49-223 |
1.32e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.71 E-value: 1.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 49 LERAAQAAK-------DLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERRKTLNEETKQ-H 120
Cdd:COG1196 205 LERQAEKAEryrelkeELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELElE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 121 QARAQYQDKLAR--------QRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARAR 192
Cdd:COG1196 285 EAQAEEYELLAElarleqdiARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE 364
|
170 180 190
....*....|....*....|....*....|.
gi 1712965697 193 VERENADIIREQIRLKAAEHRQTVLESIKTA 223
Cdd:COG1196 365 EALLEAEAELAEAEEELEELAEELLEALRAA 395
|
|
| RecA-like_ATAD1 |
cd19520 |
ATPase domain of ATPase family AAA domain-containing protein 1 and similar ATPase domains; ... |
340-461 |
1.79e-07 |
|
ATPase domain of ATPase family AAA domain-containing protein 1 and similar ATPase domains; ATPase family AAA domain-containing protein 1 (ATAD1, also known as Thorase) is an ATPase that plays a critical role in regulating the surface expression of alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptors, thereby regulating synaptic plasticity, learning and memory. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410928 [Multi-domain] Cd Length: 166 Bit Score: 52.04 E-value: 1.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 340 RNILMYGPPGTGKTLFAKKLAMHSGMDY-----AIMTG---GDvapmGRDGVTAmhkVFDWANTSRRGlLLFVDEADAFL 411
Cdd:cd19520 36 KGVLLYGPPGCGKTMLAKATAKEAGARFinlqvSSLTDkwyGE----SQKLVAA---VFSLASKLQPS-IIFIDEIDSFL 107
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1712965697 412 RKRStekiSEDLRATL---NAFL-----YRTGEQSnKFMLVLASNQPEQFDWAINDRI 461
Cdd:cd19520 108 RQRS----STDHEATAmmkAEFMslwdgLSTDGNC-RVIVMGATNRPQDLDEAILRRM 160
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
785-984 |
1.85e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 55.38 E-value: 1.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 785 VEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEaPLAEDVAAPVVEVTPPPSAEAPlAEDVAAPVVEVTPPPSAEAPLAEDV 864
Cdd:PRK07764 584 VEAVVGPAPGAAGGEGPPAPASSGPPEEAAR-PAAPAAPAAPAAPAPAGAAAAP-AEASAAPAPGVAAPEHHPKHVAVPD 661
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 865 AAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPL 944
Cdd:PRK07764 662 ASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPL 741
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1712965697 945 AEDVAAPVVEVTPPPSVEAPL---AEDVAAPVVEVTPPPSAEV 984
Cdd:PRK07764 742 PPEPDDPPDPAGAPAQPPPPPapaPAAAPAAAPPPSPPSEEEE 784
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
49-218 |
1.96e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.33 E-value: 1.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 49 LERAAQAAKDLD--KSRHAKEALDLARMQEQSTQLE-----HQSKIKEYEAAVEQLKGDQIRIQgEERRKTLNEETKQHQ 121
Cdd:COG1196 294 LAELARLEQDIArlEERRRELEERLEELEEELAELEeeleeLEEELEELEEELEEAEEELEEAE-AELAEAEEALLEAEA 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 122 ARAQYQDKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVERENADII 201
Cdd:COG1196 373 ELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA 452
|
170
....*....|....*..
gi 1712965697 202 REQIRLKAAEHRQTVLE 218
Cdd:COG1196 453 ELEEEEEALLELLAELL 469
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
61-218 |
2.45e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 54.74 E-value: 2.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 61 KSRHAKEALDLARMQEQSTQlEHQSKIKEYEAAVEQLKGDQ-------IRIQGEERRKTLnEETKQHQARAQYQDKLARQ 133
Cdd:pfam17380 390 KNERVRQELEAARKVKILEE-ERQRKIQQQKVEMEQIRAEQeearqreVRRLEEERAREM-ERVRLEEQERQQQVERLRQ 467
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 134 RYEDQLRQQQilneeNLRKQEESVQKQEAMRKATIEHEMELRHKnellRIEAESKARARVERENAD----IIREQIRLKA 209
Cdd:pfam17380 468 QEEERKRKKL-----ELEKEKRDRKRAEEQRRKILEKELEERKQ----AMIEEERKRKLLEKEMEErqkaIYEEERRREA 538
|
....*....
gi 1712965697 210 AEHRQTVLE 218
Cdd:pfam17380 539 EEERRKQQE 547
|
|
| ftsH |
CHL00176 |
cell division protein; Validated |
342-527 |
3.18e-07 |
|
cell division protein; Validated
Pssm-ID: 214386 [Multi-domain] Cd Length: 638 Bit Score: 54.29 E-value: 3.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 342 ILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMgRDGVTA--MHKVFDWANtSRRGLLLFVDEADAFLRKRSTE-K 418
Cdd:CHL00176 219 VLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM-FVGVGAarVRDLFKKAK-ENSPCIVFIDEIDAVGRQRGAGiG 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 419 ISEDLR-ATLNAFL-YRTGEQSNKFMLVL-ASNQPEQFDWAI--NDRIDEIVNFALPGPDERDRLVRLYFDKYVLEPATG 493
Cdd:CHL00176 297 GGNDEReQTLNQLLtEMDGFKGNKGVIVIaATNRVDILDAALlrPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVS 376
|
170 180 190
....*....|....*....|....*....|....
gi 1712965697 494 GRQrmklaqfdyiakcseIAKRTEGMSGREISKL 527
Cdd:CHL00176 377 LEL---------------IARRTPGFSGADLANL 395
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
52-214 |
4.53e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 4.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 52 AAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQskIKEYEAAVEQLKGDQIRIQGE--ERRKTLNEETKQHQARAQYQDK 129
Cdd:COG1196 285 EAQAEEYELLAELARLEQDIARLEERRRELEER--LEELEEELAELEEELEELEEEleELEEELEEAEEELEEAEAELAE 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 130 LARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVERENADIIREQIRLKA 209
Cdd:COG1196 363 AEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEE 442
|
....*
gi 1712965697 210 AEHRQ 214
Cdd:COG1196 443 ALEEA 447
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
51-214 |
4.81e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.38 E-value: 4.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 51 RAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVE--------QLKGDQIRIQGEERRKTlnEETKQHQA 122
Cdd:PTZ00121 1351 EAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEakkkaeedKKKADELKKAAAAKKKA--DEAKKKAE 1428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 123 RAQYQDKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATiehemELRHKNELLRIEAESKARARVERENADIIR 202
Cdd:PTZ00121 1429 EKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKAD-----EAKKKAEEAKKADEAKKKAEEAKKKADEAK 1503
|
170
....*....|....
gi 1712965697 203 --EQIRLKAAEHRQ 214
Cdd:PTZ00121 1504 kaAEAKKKADEAKK 1517
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
687-980 |
5.37e-07 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 53.94 E-value: 5.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 687 PSEEAVAAAPLVQDVITPVVEVTPPPSeeaVAAAAAPLVQdviaPVVEVTPPPSEEAVaaaaaplvQDVIAPVVEVTPPP 766
Cdd:PRK10263 319 PVAVAAAATTATQSWAAPVEPVTQTPP---VASVDVPPAQ----PTVAWQPVPGPQTG--------EPVIAPAPEGYPQQ 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 767 SEEAAAAAPLVQDVIAPVvevTPPPSAEAPLAEDVAApvvEVTPPPSAEAPLAEDVAAPVVEvtpPPSAEAPLAEDVAAP 846
Cdd:PRK10263 384 SQYAQPAVQYNEPLQQPV---QPQQPYYAPAAEQPAQ---QPYYAPAPEQPAQQPYYAPAPE---QPVAGNAWQAEEQQS 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 847 VVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVvaPVIEVTPPpsAEVPL-------------AEDVAAPVVEV 913
Cdd:PRK10263 455 TFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPE--PVVEETKP--ARPPLyyfeeveekrareREQLAAWYQPI 530
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1712965697 914 TPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEdVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPP 980
Cdd:PRK10263 531 PEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSP-LASGVKKATLATGAAATVAAPVFSLANSGGPRP 596
|
|
| PTZ00454 |
PTZ00454 |
26S protease regulatory subunit 6B-like protein; Provisional |
340-483 |
5.88e-07 |
|
26S protease regulatory subunit 6B-like protein; Provisional
Pssm-ID: 240423 [Multi-domain] Cd Length: 398 Bit Score: 53.23 E-value: 5.88e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGD-VAPMGRDGVTAMHKVFDWANTSRRGlLLFVDEADAFLRK----- 413
Cdd:PTZ00454 180 RGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEfVQKYLGEGPRMVRDVFRLARENAPS-IIFIDEVDSIATKrfdaq 258
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965697 414 ----RSTEKISEDLRATLNAFlyrtgEQSNKFMLVLASNQPEQFDWAI--NDRIDEIVNFalPGPDERDRlvRLYF 483
Cdd:PTZ00454 259 tgadREVQRILLELLNQMDGF-----DQTTNVKVIMATNRADTLDPALlrPGRLDRKIEF--PLPDRRQK--RLIF 325
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
730-983 |
5.97e-07 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 53.70 E-value: 5.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 730 APVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSEEAAAAAPLVQDVIAPVVEVTPPPSAEAPLAEDvaapvvEVT 809
Cdd:PRK07003 367 APGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATAD------RGD 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 810 PPPSAEAPLAEDVAAPvveVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPV 889
Cdd:PRK07003 441 DAADGDAPVPAKANAR---ASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAAS 517
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 890 IEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDV-----------AAPVVEVTPPPSAEAPLAEDVAAPVVEVtPP 958
Cdd:PRK07003 518 REDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVlrnagmrvssdRGARAAAAAKPAAAPAAAPKPAAPRVAV-QV 596
|
250 260
....*....|....*....|....*
gi 1712965697 959 PSVEAPLAEDVAAPVVEVTPPPSAE 983
Cdd:PRK07003 597 PTPRARAATGDAPPNGAARAEQAAE 621
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
50-223 |
8.40e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.61 E-value: 8.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 50 ERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYE---AAVEQLKGDQIRiQGEERRKTLNEETKQHQARAQY 126
Cdd:PTZ00121 1460 EEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEakkAAEAKKKADEAK-KAEEAKKADEAKKAEEAKKADE 1538
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 127 QDKLARQRYEDQLRQQqilneENLRKQEEsVQKQEAMRKATIEHEMELRHKNELLRIE------------------AESK 188
Cdd:PTZ00121 1539 AKKAEEKKKADELKKA-----EELKKAEE-KKKAEEAKKAEEDKNMALRKAEEAKKAEearieevmklyeeekkmkAEEA 1612
|
170 180 190
....*....|....*....|....*....|....*..
gi 1712965697 189 ARARVERENADIIR--EQIRLKAAEHRQTVLESIKTA 223
Cdd:PTZ00121 1613 KKAEEAKIKAEELKkaEEEKKKVEQLKKKEAEEKKKA 1649
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
49-221 |
1.05e-06 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 51.84 E-value: 1.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 49 LERAAQAAKDLDKsrhAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKGDQiriqgEERRKTLNEETKQHQAR--AQY 126
Cdd:pfam13868 122 LEKQRQLREEIDE---FNEEQAEWKELEKEEEREEDERILEYLKEKAEREEER-----EAEREEIEEEKEREIARlrAQQ 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 127 QDKLARQRYEDQLRQQQILnEENLRKQEEsVQKQEAMRKATIEHEM------ELRHKNELLRIEA--ESKARARVERENA 198
Cdd:pfam13868 194 EKAQDEKAERDELRAKLYQ-EEQERKERQ-KEREEAEKKARQRQELqqareeQIELKERRLAEEAerEEEEFERMLRKQA 271
|
170 180
....*....|....*....|....*....
gi 1712965697 199 DIIR------EQIRLKAAEHRQTVLESIK 221
Cdd:pfam13868 272 EDEEieqeeaEKRRMKRLEHRRELEKQIE 300
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
60-221 |
1.05e-06 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 52.65 E-value: 1.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 60 DKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERRKTLNEETKQHQARAQyQDKLARQRYEDQL 139
Cdd:pfam15709 359 EQRRLQQEQLERAEKMREELELEQQRRFEEIRLRKQRLEEERQRQEEEERKQRLQLQAAQERARQQ-QEEFRRKLQELQR 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 140 RQQQilnEENLRKQ-EESVQKQEAMRKATiEH----EMELRHKNELLRIEAESKARARVErenadiiREQIRLKAAEHRQ 214
Cdd:pfam15709 438 KKQQ---EEAERAEaEKQRQKELEMQLAE-EQkrlmEMAEEERLEYQRQKQEAEEKARLE-------AEERRQKEEEAAR 506
|
....*..
gi 1712965697 215 TVLESIK 221
Cdd:pfam15709 507 LALEEAM 513
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
63-218 |
1.28e-06 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 51.84 E-value: 1.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 63 RHAKEALDLARMQ-EQSTQLEHQSKIKeYEAAVEQLKGDQIRIqgEERRKTLNEETKQHQARAQyqdklARQRYEDQLrQ 141
Cdd:pfam13868 9 RELNSKLLAAKCNkERDAQIAEKKRIK-AEEKEEERRLDEMME--EERERALEEEEEKEEERKE-----ERKRYRQEL-E 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1712965697 142 QQILNEENLRKQEESVQKQEA-MRKATIEHEMELRHKNELLRIEAESKARarveRENADIIREQIRLKAAEHRQTVLE 218
Cdd:pfam13868 80 EQIEEREQKRQEEYEEKLQEReQMDEIVERIQEEDQAEAEEKLEKQRQLR----EEIDEFNEEQAEWKELEKEEEREE 153
|
|
| RecA-like_VCP_r2 |
cd19529 |
second of two ATPase domains of Valosin-containing protein-like ATPase (VAT) and similar ... |
340-457 |
1.33e-06 |
|
second of two ATPase domains of Valosin-containing protein-like ATPase (VAT) and similar ATPase domains; The Valosin-containing protein-like ATPase of Thermoplasma acidophilum (VAT), is an archaeal homolog of the ubiquitous Cdc48/p97. It is a protein unfoldase that functions in concert with the 20S proteasome by unfolding proteasome substrates and passing them on for degradation. VAT forms a homohexamer, each monomer contains two tandem ATPase domains, referred to as D1 and D2, and an N-terminal domain. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410937 [Multi-domain] Cd Length: 159 Bit Score: 49.42 E-value: 1.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDV-APMGRDGVTAMHKVFDWANTSRRgLLLFVDEADAFLRKRS--- 415
Cdd:cd19529 28 KGILLYGPPGTGKTLLAKAVATESNANFISVKGPELlSKWVGESEKAIREIFRKARQVAP-CVIFFDEIDSIAPRRGttg 106
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1712965697 416 ----TEKISEDLRATLNAFlyrtgEQSNKFMLVLASNQPEQFDWAI 457
Cdd:cd19529 107 dsgvTERVVNQLLTELDGL-----EEMNGVVVIAATNRPDIIDPAL 147
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
840-982 |
1.42e-06 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 52.18 E-value: 1.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 840 AEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPlaedvVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSA 919
Cdd:PRK07994 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPP-----PASAPQQAPAVPLPETTSQLLAARQQLQRAQGAT 436
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1712965697 920 EAPLAEDVAAPVVEvtPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPP--PSA 982
Cdd:PRK07994 437 KAKKSEPAAASRAR--PVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVatPKA 499
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
36-223 |
1.42e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.84 E-value: 1.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 36 KPKDKWSNFDPTGLERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERR----K 111
Cdd:PTZ00121 1073 KPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKaedaK 1152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 112 TLNEETKQHQARAQYQDKLAR--QRYEDQLRQQQILNEENLRKQE-----------ESVQKQEAMRKATIEHEMELRHKN 178
Cdd:PTZ00121 1153 RVEIARKAEDARKAEEARKAEdaKKAEAARKAEEVRKAEELRKAEdarkaeaarkaEEERKAEEARKAEDAKKAEAVKKA 1232
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965697 179 ELLRIEAESKARARVERENADI-----------IREQIRLKAAEHRQTvlESIKTA 223
Cdd:PTZ00121 1233 EEAKKDAEEAKKAEEERNNEEIrkfeearmahfARRQAAIKAEEARKA--DELKKA 1286
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
707-924 |
1.60e-06 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 52.19 E-value: 1.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 707 EVTPPPSEEAVAAAAAPlvqdVIAPVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSEEAAAAAPLVQDVIAPVVE 786
Cdd:PRK12323 371 GAGPATAAAAPVAQPAP----AAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGG 446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 787 VTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLaEDVAAPVVEVTPPPSAEAPLAEDVAA 866
Cdd:PRK12323 447 APAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPW-EELPPEFASPAPAQPDAAPAGWVAES 525
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1712965697 867 PVVEVTPPPSAE-PPLAEdvvapvievtPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLA 924
Cdd:PRK12323 526 IPDPATADPDDAfETLAP----------APAAAPAPRAAAATEPVVAPRPPRASASGLP 574
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
50-232 |
1.89e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.45 E-value: 1.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 50 ERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEaavEQLKGDQIRIQGEE--------RRKTLNEETKQHQ 121
Cdd:PTZ00121 1603 EEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAE---EKKKAEELKKAEEEnkikaaeeAKKAEEDKKKAEE 1679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 122 ARAQYQDKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKAtiehEMELRHKNELLRIEAESKAR----ARVEREN 197
Cdd:PTZ00121 1680 AKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKA----EEENKIKAEEAKKEAEEDKKkaeeAKKDEEE 1755
|
170 180 190
....*....|....*....|....*....|....*
gi 1712965697 198 adiiREQIRLKAAEHRQTVLESIKTAGAVFGEGFR 232
Cdd:PTZ00121 1756 ----KKKIAHLKKEEEKKAEEIRKEKEAVIEEELD 1786
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
49-255 |
1.91e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.08 E-value: 1.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 49 LERAAQAAKDLDKSRHAKEALD--LARMQEQSTQLEHqsKIKEYEAAVEQLKGDQIRIQGEERRKTLNEETKQHQARAQY 126
Cdd:COG4717 80 LKEAEEKEEEYAELQEELEELEeeLEELEAELEELRE--ELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEE 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 127 QDKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEM----ELRHKNELLRIEAEskaRARVERENADIIR 202
Cdd:COG4717 158 LRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEElqqrLAELEEELEEAQEE---LEELEEELEQLEN 234
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1712965697 203 EQIRLKAAEHRQTVLESIKTAGAVFgeGFRAFVSDWDKVTATVAGLTLLAVGV 255
Cdd:COG4717 235 ELEAAALEERLKEARLLLLIAAALL--ALLGLGGSLLSLILTIAGVLFLVLGL 285
|
|
| RecA-like_CDC48_r2-like |
cd19528 |
second of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or ... |
340-465 |
1.92e-06 |
|
second of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or VCP in metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the second of the two ATPase domains. CDC48's roles include in the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis, and in the formation of the nuclear envelope, and of the transitional endoplasmic reticulum (tER). This RecA-like_cdc48_r2-like subfamily belongs to the RecA-like family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410936 [Multi-domain] Cd Length: 161 Bit Score: 49.05 E-value: 1.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMG-RDGVTAMHKVFDWANTSRRgLLLFVDEADAFLRKRSTeK 418
Cdd:cd19528 28 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWfGESEANVRDIFDKARAAAP-CVLFFDELDSIAKARGG-N 105
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1712965697 419 ISEDLRAT---LNAFLYRT-GEQSNKFMLVL-ASNQPEQFDWAI--NDRIDEIV 465
Cdd:cd19528 106 IGDAGGAAdrvINQILTEMdGMNTKKNVFIIgATNRPDIIDPAIlrPGRLDQLI 159
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
788-984 |
2.35e-06 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 51.91 E-value: 2.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 788 TPPPSAEAPlaedvAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDV-AAPVVEVTPPPSAEAPLAEDVA- 865
Cdd:PRK07764 616 AAPAAPAAP-----AAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGdGWPAKAGGAAPAAPPPAPAPAAp 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 866 -APVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPsaEAPLAEDVAAPVVEVTPPPSAEAPL 944
Cdd:PRK07764 691 aAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPP--EPDDPPDPAGAPAQPPPPPAPAPAA 768
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1712965697 945 AEDVAAPVvevtPPPSVEAPLAEDVAAPVVEVTPPPSAEV 984
Cdd:PRK07764 769 APAAAPPP----SPPSEEEEMAEDDAPSMDDEDRRDAEEV 804
|
|
| RecA-like_CDC48_r1-like |
cd19519 |
first of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or VCP ... |
340-457 |
2.39e-06 |
|
first of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. CDC48's roles include in the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis, and in the formation of the nuclear envelope, and of the transitional endoplasmic reticulum (tER). This RecA-like_cdc48_r1-like subfamily belongs to the RecA-like family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410927 [Multi-domain] Cd Length: 166 Bit Score: 48.59 E-value: 2.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDV-APMGRDGVTAMHKVFDWANTSRRGlLLFVDEADAFLRKRSTEK 418
Cdd:cd19519 35 RGILLYGPPGTGKTLIARAVANETGAFFFLINGPEImSKLAGESESNLRKAFEEAEKNAPA-IIFIDEIDAIAPKREKTH 113
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1712965697 419 ISEDLRATLNAFLYRTGEQSNKFMLVL-ASNQPEQFDWAI 457
Cdd:cd19519 114 GEVERRIVSQLLTLMDGLKQRAHVIVMaATNRPNSIDPAL 153
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
50-211 |
2.57e-06 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 50.69 E-value: 2.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 50 ERAAQAAkdlDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLK------GDQIRIQGEERRKTLNEETKQHQAR 123
Cdd:pfam13868 23 ERDAQIA---EKKRIKAEEKEEERRLDEMMEEERERALEEEEEKEEERKeerkryRQELEEQIEEREQKRQEEYEEKLQE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 124 AQYQDKLARQRYEDQLRQQQILNEENLRKQEEsVQKQEAMRKATIEhEMELRHKNELLRIEAESKARARVERENADIIRE 203
Cdd:pfam13868 100 REQMDEIVERIQEEDQAEAEEKLEKQRQLREE-IDEFNEEQAEWKE-LEKEEEREEDERILEYLKEKAEREEEREAEREE 177
|
....*...
gi 1712965697 204 QIRLKAAE 211
Cdd:pfam13868 178 IEEEKERE 185
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
51-200 |
2.79e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.68 E-value: 2.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 51 RAAQAAKDLDKSRhaKEALDLARMQEQSTQLEHQSKIKEYEAAveqlKGDQIRIQGEERRKTLNEETKQHQARAQYQDKL 130
Cdd:PTZ00121 1662 KAAEEAKKAEEDK--KKAEEAKKAEEDEKKAAEALKKEAEEAK----KAEELKKKEAEEKKKAEELKKAEEENKIKAEEA 1735
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 131 ARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELlrIEAESKARARVERENADI 200
Cdd:PTZ00121 1736 KKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEEL--DEEDEKRRMEVDKKIKDI 1803
|
|
| RecA-like_CDC48_NLV2_r1-like |
cd19503 |
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and ... |
340-457 |
3.26e-06 |
|
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. This subfamily also includes the first of the two ATPase domains of NVL (nuclear VCP-like protein) 2, an isoform of NVL mainly present in the nucleolus, which is involved in ribosome biogenesis, in telomerase assembly and the regulation of telomerase activity, and in pre-rRNA processing. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410911 [Multi-domain] Cd Length: 165 Bit Score: 48.44 E-value: 3.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVapMGR---DGVTAMHKVFDWANTSRRGlLLFVDEADAFLRKRST 416
Cdd:cd19503 35 RGVLLHGPPGTGKTLLARAVANEAGANFLSISGPSI--VSKylgESEKNLREIFEEARSHAPS-IIFIDEIDALAPKREE 111
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1712965697 417 --EKISEDLRATLNAfLYRTGEQSNKFMLVLASNQPEQFDWAI 457
Cdd:cd19503 112 dqREVERRVVAQLLT-LMDGMSSRGKVVVIAATNRPDAIDPAL 153
|
|
| PLN03209 |
PLN03209 |
translocon at the inner envelope of chloroplast subunit 62; Provisional |
779-982 |
3.28e-06 |
|
translocon at the inner envelope of chloroplast subunit 62; Provisional
Pssm-ID: 178748 [Multi-domain] Cd Length: 576 Bit Score: 51.08 E-value: 3.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 779 DVIAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDV--AAPVVEVTPPPSA 856
Cdd:PLN03209 337 DGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLKPPTSPIPTPPSSSPASSKSVdaVAKPAEPDVVPSP 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 857 EAP--LAEDVAAPVVEVTPPPSAEPPLAEDVVAPvieVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEV 934
Cdd:PLN03209 417 GSAsnVPEVEPAQVEAKKTRPLSPYARYEDLKPP---TSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPAN 493
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1712965697 935 TPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPPSA 982
Cdd:PLN03209 494 MRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTAL 541
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
578-980 |
3.44e-06 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 51.48 E-value: 3.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 578 TPPKPEGTSGGKMGFVLPLSEAPQAKDVVAPVVEVTPPPPPSAEVAAPqiqdvitqvlEAMPPPSVEAAAPQAqdvATPI 657
Cdd:PHA03247 2719 TPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGP----------PAPAPPAAPAAGPPR---RLTR 2785
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 658 AEVTPPPSVEVEPPLVPDVIAPIVEVTPPPSEEAVAAAPLVQDVITPVVEVTPPPSEEAVAAAAAPLVQDVI--APVVEV 735
Cdd:PHA03247 2786 PAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVApgGDVRRR 2865
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 736 TPP-PSEEAVAAAAAPLVQDVIAPVVEVTPppseeaaaaaplvQDVIAPVVEVTPPPSAEAPlaedvaapvVEVTPPPSA 814
Cdd:PHA03247 2866 PPSrSPAAKPAAPARPPVRRLARPAVSRST-------------ESFALPPDQPERPPQPQAP---------PPPQPQPQP 2923
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 815 EAPLAEDVAAPvvevtPPPSAEAPLAEDvaaPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTP 894
Cdd:PHA03247 2924 PPPPQPQPPPP-----PPPRPQPPLAPT---TDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPP 2995
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 895 PPSAEVPLAEDVAAPV---VEVTPPPSA-------EAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEAP 964
Cdd:PHA03247 2996 LTGHSLSRVSSWASSLalhEETDPPPVSlkqtlwpPDDTEDSDADSLFDSDSERSDLEALDPLPPEPHDPFAHEPDPATP 3075
|
410
....*....|....*.
gi 1712965697 965 LAEDVAAPVVEVTPPP 980
Cdd:PHA03247 3076 EAGARESPSSQFGPPP 3091
|
|
| RecA-like_Figl-1 |
cd19525 |
ATPase domain of Fidgetin-Like 1 (FIGL-1); FIGL-1 may participate in DNA repair in the nucleus; ... |
340-461 |
3.97e-06 |
|
ATPase domain of Fidgetin-Like 1 (FIGL-1); FIGL-1 may participate in DNA repair in the nucleus; it may be involved in DNA double-strand break repair via homologous recombination. Caenorhabditis elegans FIGL-1 is a nuclear protein and controls the mitotic progression in the germ line and mouse FIGL-1 may be involved in the control of male meiosis. human FIGL-1 has been shown to be a centrosome protein involved in ciliogenesis perhaps as a microtubule-severing protein. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410933 [Multi-domain] Cd Length: 186 Bit Score: 48.45 E-value: 3.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPM----GRDGVTAMHKVFDWANTSrrglLLFVDEADAFLRKRS 415
Cdd:cd19525 56 KGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKwvgeGEKMVRALFSVARCKQPA----VIFIDEIDSLLSQRG 131
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1712965697 416 tEKISEDLRATLNAFLYR----TGEQSNKFMLVLASNQPEQFDWAINDRI 461
Cdd:cd19525 132 -EGEHESSRRIKTEFLVQldgaTTSSEDRILVVGATNRPQEIDEAARRRL 180
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
50-221 |
4.14e-06 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 49.92 E-value: 4.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 50 ERAAQAAKDLDKSRHAKEA----LDLARMQEQSTQLEHQSKIKEYEAAVEQLKGD--QIRIQGEERRKTLNEETKQHQAR 123
Cdd:pfam13868 155 ERILEYLKEKAEREEEREAereeIEEEKEREIARLRAQQEKAQDEKAERDELRAKlyQEEQERKERQKEREEAEKKARQR 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 124 A------QYQDKLARQRYEDQLRQQQILNEENLRKQEEsvQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVEREN 197
Cdd:pfam13868 235 QelqqarEEQIELKERRLAEEAEREEEEFERMLRKQAE--DEEIEQEEAEKRRMKRLEHRRELEKQIEEREEQRAAEREE 312
|
170 180
....*....|....*....|....
gi 1712965697 198 ADIIREQIRlKAAEHRQTVLESIK 221
Cdd:pfam13868 313 ELEEGERLR-EEEAERRERIEEER 335
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
778-883 |
4.25e-06 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 50.87 E-value: 4.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 778 QDVIAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVeVTPPPSAE 857
Cdd:PRK14951 389 PAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPET-VAIPVRVA 467
|
90 100
....*....|....*....|....*.
gi 1712965697 858 APLAEDVAAPVVEVTPPPSAEPPLAE 883
Cdd:PRK14951 468 PEPAVASAAPAPAAAPAAARLTPTEE 493
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
782-950 |
4.34e-06 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 50.75 E-value: 4.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 782 APVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLA 861
Cdd:PRK07764 642 APAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQP 721
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 862 EDVA---APVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPvvevtPPP 938
Cdd:PRK07764 722 PQAAqgaSAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSM-----DDE 796
|
170
....*....|..
gi 1712965697 939 SAEAPLAEDVAA 950
Cdd:PRK07764 797 DRRDAEEVAMEL 808
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
51-214 |
4.47e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.91 E-value: 4.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 51 RAAQAAKDLDKSRHAKEAldlaRMQEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERRKtLNEETKQHQARAQYQDKL 130
Cdd:PTZ00121 1200 RKAEAARKAEEERKAEEA----RKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRK-FEEARMAHFARRQAAIKA 1274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 131 ARQRYEDQLRQ-QQILNEENLRKQEESVQKQEAMRKATIEHEM-ELRHKNELLRIEAESKARARVERENADIIREQ---- 204
Cdd:PTZ00121 1275 EEARKADELKKaEEKKKADEAKKAEEKKKADEAKKKAEEAKKAdEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAeaea 1354
|
170
....*....|..
gi 1712965697 205 --IRLKAAEHRQ 214
Cdd:PTZ00121 1355 aaDEAEAAEEKA 1366
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
51-221 |
4.87e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.91 E-value: 4.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 51 RAAQAAKDLDKSRHAKE---ALDL-----ARMQEQSTQLEHQSKIKEYEAAVEQLKGDQIRiQGEERRKTLNEETKQHQA 122
Cdd:PTZ00121 1170 RKAEDAKKAEAARKAEEvrkAEELrkaedARKAEAARKAEEERKAEEARKAEDAKKAEAVK-KAEEAKKDAEEAKKAEEE 1248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 123 RAQYQ-DKLARQRYEDQLRQQQILNEEN------LRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVER 195
Cdd:PTZ00121 1249 RNNEEiRKFEEARMAHFARRQAAIKAEEarkadeLKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1328
|
170 180
....*....|....*....|....*.
gi 1712965697 196 ENADIIReqirlKAAEHRQTVLESIK 221
Cdd:PTZ00121 1329 KKADAAK-----KKAEEAKKAAEAAK 1349
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
789-971 |
5.32e-06 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 50.75 E-value: 5.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 789 PPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPV 868
Cdd:PRK07764 628 APAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAA 707
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 869 VEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAE------DVAAPVVEVTPPPSAEAPLAEDVAAPVvevtPPPSAEA 942
Cdd:PRK07764 708 TPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPepddppDPAGAPAQPPPPPAPAPAAAPAAAPPP----SPPSEEE 783
|
170 180
....*....|....*....|....*....
gi 1712965697 943 PLAEDVAAPVvevtPPPSVEAPLAEDVAA 971
Cdd:PRK07764 784 EMAEDDAPSM----DDEDRRDAEEVAMEL 808
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
51-221 |
5.48e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.91 E-value: 5.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 51 RAAQAAKDLDKSRHAKEALDLaRMQEQSTQLEHQSKIKEYE----AAVEQLKGDQIRIQGEERRKTlNEETKQHQARAQY 126
Cdd:PTZ00121 1626 KKAEEEKKKVEQLKKKEAEEK-KKAEELKKAEEENKIKAAEeakkAEEDKKKAEEAKKAEEDEKKA-AEALKKEAEEAKK 1703
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 127 QDKLARQRYEDQLRQQQILNEENLR--KQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARA-RVERENADIIRE 203
Cdd:PTZ00121 1704 AEELKKKEAEEKKKAEELKKAEEENkiKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAeEIRKEKEAVIEE 1783
|
170
....*....|....*...
gi 1712965697 204 QIRLKAAEHRQTVLESIK 221
Cdd:PTZ00121 1784 ELDEEDEKRRMEVDKKIK 1801
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
55-223 |
6.41e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 6.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 55 AAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKG-------DQIRIQGE-----ERRKTLNEETKQHQA 122
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLevseleeEIEELQKElyalaNEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 123 RAQY--QDKLARQRYEDQLRQQQILNEENL---RKQEESVQKQ-EAMRKATIEHEM---ELRHKNELLRIEAESKARARV 193
Cdd:TIGR02168 310 RLANleRQLEELEAQLEELESKLDELAEELaelEEKLEELKEElESLEAELEELEAeleELESRLEELEEQLETLRSKVA 389
|
170 180 190
....*....|....*....|....*....|....*.
gi 1712965697 194 ERE------NADIIREQIRLKAAEHRQTVLESIKTA 223
Cdd:TIGR02168 390 QLElqiaslNNEIERLEARLERLEDRRERLQQEIEE 425
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
771-1038 |
6.81e-06 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 50.71 E-value: 6.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 771 AAAAPLVQDviAPVVEVTPP------------------------PSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDV---- 822
Cdd:PHA03247 2514 RLAPAILPD--EPVGEPVHPrmltwirgleelasddagdpppplPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARrpda 2591
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 823 ----AAPVVEVTPP-----PSAEAPLAEDVAAPvvevTPPPSAEAPLAEDVAAPVVEVTPPPSAE--------------- 878
Cdd:PHA03247 2592 ppqsARPRAPVDDRgdprgPAPPSPLPPDTHAP----DPPPPSPSPAANEPDPHPPPTVPPPERPrddpapgrvsrprra 2667
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 879 -----------------PPLAEDVVAPVIEVTPPPSAEvPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAE 941
Cdd:PHA03247 2668 rrlgraaqassppqrprRRAARPTVGSLTSLADPPPPP-PTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPA 2746
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 942 APlaedvAAPVVEVTP--PPSVEAPLAEdvAAPVVEVTPPPSAEVKCTLSDGLDSDNTVKAePASETEHLAQPAASAETE 1019
Cdd:PHA03247 2747 GP-----ATPGGPARParPPTTAGPPAP--APPAAPAAGPPRRLTRPAVASLSESRESLPS-PWDPADPPAAVLAPAAAL 2818
|
330
....*....|....*....
gi 1712965697 1020 AKMKKEDKTVSPPKDGTPV 1038
Cdd:PHA03247 2819 PPAASPAGPLPPPTSAQPT 2837
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
778-928 |
7.68e-06 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 49.86 E-value: 7.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 778 QDVIAPVVEVTPPPSAEAPlAEDVAAPVVEvtPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEvtPPPSAE 857
Cdd:PRK07994 382 QATAAPTAAVAPPQAPAVP-PPPASAPQQA--PAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRAR--PVNSAL 456
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1712965697 858 APLAEDVAAPVVEVTPPPSAEP----PLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVA 928
Cdd:PRK07994 457 ERLASVRPAPSALEKAPAKKEAyrwkATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAAEAIERDPWAALVS 531
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
49-214 |
7.79e-06 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 49.15 E-value: 7.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 49 LERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQsKIKEYEAAV---EQLKGDQIRIQGEERRKTLNEETKQHQARaQ 125
Cdd:pfam13868 53 RERALEEEEEKEEERKEERKRYRQELEEQIEEREQK-RQEEYEEKLqerEQMDEIVERIQEEDQAEAEEKLEKQRQLR-E 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 126 YQDKLARQRYEDQLRQQQILNEENLR------KQEESVQKQEAMRK--------------ATIEHEMELRHKNELLRI-- 183
Cdd:pfam13868 131 EIDEFNEEQAEWKELEKEEEREEDERileylkEKAEREEEREAEREeieeekereiarlrAQQEKAQDEKAERDELRAkl 210
|
170 180 190
....*....|....*....|....*....|....
gi 1712965697 184 ---EAESKARARVERENADIIREQIRLKAAEHRQ 214
Cdd:pfam13868 211 yqeEQERKERQKEREEAEKKARQRQELQQAREEQ 244
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
619-896 |
8.07e-06 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 50.08 E-value: 8.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 619 SAEVAAPQIQDVITQVLEA-----MPPPSVEAAAPqaqDVATPIAEVTPPPSVEVEPPlvpdVIAPIVEVTPPPSEEAVA 693
Cdd:PRK10263 317 TEPVAVAAAATTATQSWAApvepvTQTPPVASVDV---PPAQPTVAWQPVPGPQTGEP----VIAPAPEGYPQQSQYAQP 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 694 AAPLVQDVITPVvevtPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSEEAAAA 773
Cdd:PRK10263 390 AVQYNEPLQQPV----QPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTE 465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 774 APLVQDVIAPVVEVTPPPSAEAPLAEDVaaPVVEVTPPpsAEAPL-------------AEDVAAPVVEVTPPPSAEAPLA 840
Cdd:PRK10263 466 QTYQQPAAQEPLYQQPQPVEQQPVVEPE--PVVEETKP--ARPPLyyfeeveekrareREQLAAWYQPIPEPVKEPEPIK 541
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965697 841 EDVAAPVVEVTPPPSAEAPLAEdVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPP 896
Cdd:PRK10263 542 SSLKAPSVAAVPPVEAAAAVSP-LASGVKKATLATGAAATVAAPVFSLANSGGPRP 596
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
823-1031 |
8.52e-06 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 49.91 E-value: 8.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 823 AAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPS----AEPPLAEDVVAPVIEV-TPPPS 897
Cdd:pfam05109 440 AAPNTTTGLPSSTHVPTNLTAPASTGPTVSTADVTSPTPAGTTSGASPVTPSPSprdnGTESKAPDMTSPTSAVtTPTPN 519
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 898 AEVPlaedvaAPVVeVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPL------AEDVAAPVVEVTPPPSVEAPLAEDVAA 971
Cdd:pfam05109 520 ATSP------TPAV-TTPTPNATSPTLGKTSPTSAVTTPTPNATSPTpavttpTPNATIPTLGKTSPTSAVTTPTPNATS 592
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965697 972 PVVEVTPPPSAEVKCTLSdGLDSDNTVKAEPASET------EHLAQPAASAETEAKMKKEDKTVSP 1031
Cdd:pfam05109 593 PTVGETSPQANTTNHTLG-GTSSTPVVTSPPKNATsavttgQHNITSSSTSSMSLRPSSISETLSP 657
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
847-954 |
1.06e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 49.42 E-value: 1.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 847 VVE--VTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTP-PPSAEVPLAEDVAAPVVEVTPPPSAEAPL 923
Cdd:PRK14950 355 VIEalLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVReTATPPPVPPRPVAPPVPHTPESAPKLTRA 434
|
90 100 110
....*....|....*....|....*....|.
gi 1712965697 924 AEDVAAPVVEVTPPPSAEAPLAEDVAAPVVE 954
Cdd:PRK14950 435 AIPVDEKPKYTPPAPPKEEEKALIADGDVLE 465
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
710-959 |
1.15e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 49.46 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 710 PPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEVtpppseeaaaaaplvqdviAPVVEVTP 789
Cdd:PRK07003 372 VPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAE-------------------APPAAPAP 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 790 PPSAEA---PLAEDVAAPV---VEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAED 863
Cdd:PRK07003 433 PATADRgddAADGDAPVPAkanARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARA 512
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 864 VAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDV----------------AAPVVEVTPPPSAEAPLAEDV 927
Cdd:PRK07003 513 PAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVlrnagmrvssdrgaraAAAAKPAAAPAAAPKPAAPRV 592
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 1712965697 928 AAPV---------VEVTPPPSAEAPLAEDVAAPvvevtPPP 959
Cdd:PRK07003 593 AVQVptpraraatGDAPPNGAARAEQAAESRGA-----PPP 628
|
|
| SPS1 |
COG0515 |
Serine/threonine protein kinase [Signal transduction mechanisms]; |
790-1016 |
1.17e-05 |
|
Serine/threonine protein kinase [Signal transduction mechanisms];
Pssm-ID: 440281 [Multi-domain] Cd Length: 482 Bit Score: 49.24 E-value: 1.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 790 PPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVV 869
Cdd:COG0515 255 YQSAAELAAALRAVLRSLAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAPAAAAAAAAAAA 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 870 EVTPPPSAEPPLAEDVVAPVI-EVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDV 948
Cdd:COG0515 335 ALAAAAAAAAAAAAAALLAAAaALAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAALAAAAAAAAAAAAAA 414
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1712965697 949 AAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPPSAEVKCTLSDGLDSDNTVKAEPASETEHLAQPAASA 1016
Cdd:COG0515 415 AAAAALAAAAAAAAAAAAAAAAAAAAAARLLAAAAAAAAAAAAAPLLAALLAAAALAAAAAAAALALA 482
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
783-967 |
1.48e-05 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 48.83 E-value: 1.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 783 PVVEVTPPPsaeAPLAEDVAAPVVEVTPPPSAEAPLAEDVA------APVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSA 856
Cdd:PRK12727 63 PATAAAPAP---APQAPTKPAAPVHAPLKLSANANMSQRQRvasaaeDMIAAMALRQPVSVPRQAPAAAPVRAASIPSPA 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 857 EAPLAedVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEA-------------PL 923
Cdd:PRK12727 140 AQALA--HAAAVRTAPRQEHALSAVPEQLFADFLTTAPVPRAPVQAPVVAAPAPVPAIAAALAAHaayaqdddeqlddDG 217
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1712965697 924 AEDVAAPVVEVTP---PPSAEAPLAEDVAAPVVEVTPPPSVEAPLAE 967
Cdd:PRK12727 218 FDLDDALPQILPPaalPPIVVAPAAPAALAAVAAAAPAPQNDEELKQ 264
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
874-1019 |
1.49e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 48.94 E-value: 1.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 874 PPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPlaedvAAPVVEVTPPPSAEAPLAEDVAAPvv 953
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAP-----AAPPAAAPPAPVAAPAAAAPAAAP-- 438
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965697 954 evtppPSVEAPLAEDVAAPVVEVTPPPSAEVKctlsdgldsdntVKAEPASETEHLAQPAASAETE 1019
Cdd:PRK14951 439 -----AAAPAAVALAPAPPAQAAPETVAIPVR------------VAPEPAVASAAPAPAAAPAAAR 487
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
620-762 |
1.60e-05 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 49.27 E-value: 1.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 620 AEVAAPQIQDV-ITQVLEAMPPPSVEAAAPQAQDVATPIAEVTPPPSVEVEPPLVPDVIAPIVEVTPPPSEEAVAAAPLV 698
Cdd:PRK10811 863 EVQVQPVVAEVpVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEV 942
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1712965697 699 QDVITPVVEVTPPPSEEAVAAAAAP-LVQDVIAPVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEV 762
Cdd:PRK10811 943 AEHAEPVVEPQDETADIEEAAETAEvVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVP 1007
|
|
| RecA-like_spastin |
cd19524 |
ATPase domain of spastin; Spastin is an ATP-dependent microtubule-severing protein involved in ... |
340-461 |
1.62e-05 |
|
ATPase domain of spastin; Spastin is an ATP-dependent microtubule-severing protein involved in microtubule dynamics; it specifically recognizes and cuts microtubules that are polyglutamylated. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410932 [Multi-domain] Cd Length: 164 Bit Score: 46.38 E-value: 1.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 340 RNILMYGPPGTGKTLFAKKLAMHSGMDY-----AIMTGGDVApmgrDGVTAMHKVFDWAnTSRRGLLLFVDEADAFLRKR 414
Cdd:cd19524 34 RGLLLFGPPGNGKTMLAKAVAAESNATFfnisaASLTSKYVG----EGEKLVRALFAVA-RELQPSIIFIDEVDSLLSER 108
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1712965697 415 STEKISEDLRATLNAFLYRTGEQSNKFMLVL---ASNQPEQFDWAINDRI 461
Cdd:cd19524 109 SEGEHEASRRLKTEFLIEFDGVQSNGDDRVLvmgATNRPQELDDAVLRRF 158
|
|
| flagell_FliJ |
TIGR02473 |
flagellar export protein FliJ; Members of this family are the FliJ protein found, in nearly ... |
69-193 |
1.66e-05 |
|
flagellar export protein FliJ; Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Pssm-ID: 131526 [Multi-domain] Cd Length: 141 Bit Score: 45.77 E-value: 1.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 69 LDLARMQEQSTQLEHQSKIKEYEAAVEQLkgDQIRIQGEERRKTLNEETK------QHQARAQYQDKLarqryeDQLRQQ 142
Cdd:TIGR02473 8 LDLREKEEEQAKLELAKAQAEFERLETQL--QQLIKYREEYEQQALEKVGagtsalELSNYQRFIRQL------DQRIQQ 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1712965697 143 QILNEENLRKQEEsvQKQEAMRKATIEHEM--ELRHKNELLRIEAESKARARV 193
Cdd:TIGR02473 80 QQQELALLQQEVE--AKRERLLEARRELKAleKLKEKKQKEYRAEEAKREQKE 130
|
|
| PRK14949 |
PRK14949 |
DNA polymerase III subunits gamma and tau; Provisional |
620-1038 |
1.81e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 48.95 E-value: 1.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 620 AEVAAPQIQDVITQVLEAMPPPSVEAAAPQA--QDVATPIAEVTPppsvevepplvpDVIAPIVEVTPPPSEEAVAAAPL 697
Cdd:PRK14949 372 AEISLPEGQTPSALAAAVQAPHANEPQFVNAapAEKKTALTEQTT------------AQQQVQAANAEAVAEADASAEPA 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 698 VQDVITPVVEVTPPPS---------EEAVAAAAAPLVQDVIAP--VVEVTPPPSEEavaAAAAPLVQDVIAPvvevtPPP 766
Cdd:PRK14949 440 DTVEQALDDESELLAAlnaeqavilSQAQSQGFEASSSLDADNsaVPEQIDSTAEQ---SVVNPSVTDTQVD-----DTS 511
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 767 SEEAAAAAPLVQDVIAPVVEVTPPPSAEAPLAEDvAAPVVEVTPPPSAE--APLAEDVAAPVVEVTPPPSAEAPLAEDVA 844
Cdd:PRK14949 512 ASNNSAADNTVDDNYSAEDTLESNGLDEGDYAQD-SAPLDAYQDDYVAFssESYNALSDDEQHSANVQSAQSAAEAQPSS 590
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 845 APVVEVTPPPSAEAPLAED------VAA------PVVEVTPPPSAEPPLAEDvvapVIEVTPPpsaevplaedVAAPVVE 912
Cdd:PRK14949 591 QSLSPISAVTTAAASLADDdildavLAArdsllsDLDALSPKEGDGKKSSAD----RKPKTPP----------SRAPPAS 656
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 913 VTPPPSAEAPLAEDVAAPVVEVTPPPS----AEAPLAEDVA-APVVEVTP---PPSVEAPlaEDVAAPVVEVTPPPSAEV 984
Cdd:PRK14949 657 LSKPASSPDASQTSASFDLDPDFELAThqsvPEAALASGSApAPPPVPDPydrPPWEEAP--EVASANDGPNNAAEGNLS 734
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 1712965697 985 KCTLSDGLDSDNTVkaEPASETEHLAQPAASAET-EAKMKKEDKTVSPPKDGTPV 1038
Cdd:PRK14949 735 ESVEDASNSELQAV--EQQATHQPQVQAEAQSPAsTTALTQTSSEVQDTELNLVL 787
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
795-1022 |
2.11e-05 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 48.76 E-value: 2.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 795 APLAEDVAAPVVEVTPPPS----AEAPLAEDVAAPVVEVTPP-PSAEAPlaedvaAPVVeVTPPPSAEAPLAEDVAAPVV 869
Cdd:pfam05109 475 SPTPAGTTSGASPVTPSPSprdnGTESKAPDMTSPTSAVTTPtPNATSP------TPAV-TTPTPNATSPTLGKTSPTSA 547
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 870 EVTPPPSAEPPlaedvvAPVIeVTPPPSAEVPlaedvaapVVEVTPPPSAeaplaedvaapvvEVTPPPSAEAPlaedva 949
Cdd:pfam05109 548 VTTPTPNATSP------TPAV-TTPTPNATIP--------TLGKTSPTSA-------------VTTPTPNATSP------ 593
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965697 950 aPVVEVTPPP-SVEAPLAEDVAAPVVEVTPPPSAEVKCTLSDGLDSDNT--VKAEPASETEHLAqPAASAETEAKM 1022
Cdd:pfam05109 594 -TVGETSPQAnTTNHTLGGTSSTPVVTSPPKNATSAVTTGQHNITSSSTssMSLRPSSISETLS-PSTSDNSTSHM 667
|
|
| ATG16 |
pfam08614 |
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for ... |
73-211 |
2.26e-05 |
|
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for eukaryotic cells. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. ATG16 (also known as Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway.
Pssm-ID: 462536 [Multi-domain] Cd Length: 176 Bit Score: 46.08 E-value: 2.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 73 RMQEQSTQLEHQSKikEYEAAVEQLKGDQIRIQGEERRKTLNEETKQHQARAQYQDKLA---RQRYEdqlRQQQI--LNE 147
Cdd:pfam08614 11 RLLDRTALLEAENA--KLQSEPESVLPSTSSSKLSKASPQSASIQSLEQLLAQLREELAelyRSRGE---LAQRLvdLNE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 148 ENLRKQEESVQKQEAMRKATIE----------HEMELRHKNEL----------LRIE---AESKARaRVERENADIIREQ 204
Cdd:pfam08614 86 ELQELEKKLREDERRLAALEAEraqleeklkdREEELREKRKLnqdlqdelvaLQLQlnmAEEKLR-KLEKENRELVERW 164
|
....*..
gi 1712965697 205 IRLKAAE 211
Cdd:pfam08614 165 MKRKGQE 171
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
801-912 |
2.26e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 48.27 E-value: 2.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 801 VAAPVVEVTPPPSAEAPlaeDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSaeaPLAEDVAAPVVEVTPPPSAEPP 880
Cdd:PRK14950 360 LVPVPAPQPAKPTAAAP---SPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPP---VPPRPVAPPVPHTPESAPKLTR 433
|
90 100 110
....*....|....*....|....*....|..
gi 1712965697 881 LAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVE 912
Cdd:PRK14950 434 AAIPVDEKPKYTPPAPPKEEEKALIADGDVLE 465
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
864-975 |
2.50e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 48.27 E-value: 2.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 864 VAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVvevTPPPSAeaplAEDVAAPVVEVTPPPSAEAP 943
Cdd:PRK14950 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETA---TPPPVP----PRPVAPPVPHTPESAPKLTR 433
|
90 100 110
....*....|....*....|....*....|..
gi 1712965697 944 LAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVE 975
Cdd:PRK14950 434 AAIPVDEKPKYTPPAPPKEEEKALIADGDVLE 465
|
|
| PRK11633 |
PRK11633 |
cell division protein DedD; Provisional |
851-931 |
3.45e-05 |
|
cell division protein DedD; Provisional
Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 46.15 E-value: 3.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 851 TPPPSA-EAPLAEDVAAPVVEvtPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPS-AEAPLAEDVA 928
Cdd:PRK11633 66 QPPEGAaEAVRAGDAAAPSLD--PATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKpEPKPVVEEKA 143
|
...
gi 1712965697 929 APV 931
Cdd:PRK11633 144 APT 146
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
49-214 |
4.84e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 4.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 49 LERAAQAAKDLDKSRHAKEALDLARMQE-QSTQLEHQSKIKEYEAAVEQLKGDQIRiQGEERRKTlNEETKQHQARA--Q 125
Cdd:PTZ00121 1229 VKKAEEAKKDAEEAKKAEEERNNEEIRKfEEARMAHFARRQAAIKAEEARKADELK-KAEEKKKA-DEAKKAEEKKKadE 1306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 126 YQDKLARQRYEDQLRQQQilnEENLRKQEESVQK-QEAMRKATIEHEMELRHKNELLRIEAESKArARVERENADIIREQ 204
Cdd:PTZ00121 1307 AKKKAEEAKKADEAKKKA---EEAKKKADAAKKKaEEAKKAAEAAKAEAEAAADEAEAAEEKAEA-AEKKKEEAKKKADA 1382
|
170
....*....|
gi 1712965697 205 IRLKAAEHRQ 214
Cdd:PTZ00121 1383 AKKKAEEKKK 1392
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
789-1019 |
4.90e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 47.63 E-value: 4.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 789 PPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVvevTPPPSAEAPLAEDVAAPVVEVTPP---PSAEAPLA-EDV 864
Cdd:PHA03247 278 PPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAPPDP---PPPAPAGDAEEEDDEDGAMEVVSPlprPRQHYPLGfPKR 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 865 AAPVVevTPPPSAEPPLAEDVVAPVievTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPL 944
Cdd:PHA03247 355 RRPTW--TPPSSLEDLSAGRHHPKR---ASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPP 429
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1712965697 945 AEDvaapvvevTPPPSVEAPLAEDVAAPVVEVTPPPSAEVKCTLSDgldsDNTVKAEPASETEHLAQPAASAETE 1019
Cdd:PHA03247 430 PPA--------TPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPD----DATRKALDALRERRPPEPPGADLAE 492
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
639-1016 |
5.07e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 47.29 E-value: 5.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 639 PPPSVEAAAPQAQDVATPIAEVTPPPSVEVEPPLVPdviAPIVEVTPPPSEEAVAAAPLVQDVITPVVEVTPPPSEEAVA 718
Cdd:PRK07764 398 APSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAP---APAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAP 474
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 719 AAAAPLVQdviAPVVEVTPPPSEEAVAAAAAPLVQDVIAPV----------VEVTPPPSEEAAAAAPLVQDVIAPVVEVT 788
Cdd:PRK07764 475 EPTAAPAP---APPAAPAPAAAPAAPAAPAAPAGADDAATLrerwpeilaaVPKRSRKTWAILLPEATVLGVRGDTLVLG 551
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 789 --PPPSAEAPLAEDVAAPVVEVtpppsaeapLAEDVAAPV-VEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVA 865
Cdd:PRK07764 552 fsTGGLARRFASPGNAEVLVTA---------LAEELGGDWqVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPA 622
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 866 APVVEVTPPPSAEPplAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLA 945
Cdd:PRK07764 623 APAAPAPAGAAAAP--AEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQ 700
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1712965697 946 EDVAAPVVEvtPPPSVEAPLAEDVAAPVVEVTPPPSAEVKCTLSDGLDSDNTVKAEPASETEHLAQPAASA 1016
Cdd:PRK07764 701 PAPAPAATP--PAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAA 769
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
53-211 |
5.10e-05 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 47.00 E-value: 5.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 53 AQAAKDLDKSRHAKEAL--DLARMQEQSTQLEHQSKIKE------YEAAVEQLK--GDQIRIQGEE-------------- 108
Cdd:PRK11637 85 SQASRKLRETQNTLNQLnkQIDELNASIAKLEQQQAAQErllaaqLDAAFRQGEhtGLQLILSGEEsqrgerilayfgyl 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 109 ---RRKTLNE--ETKQH--QARAQYQDKLARQR---YEDQLRQQQILNEENLRKQ-----EESVQKQEAMRKATIEHEME 173
Cdd:PRK11637 165 nqaRQETIAElkQTREElaAQKAELEEKQSQQKtllYEQQAQQQKLEQARNERKKtltglESSLQKDQQQLSELRANESR 244
|
170 180 190
....*....|....*....|....*....|....*...
gi 1712965697 174 LRhkNELLRIEAESKARArvEREnadiIREQIRLKAAE 211
Cdd:PRK11637 245 LR--DSIARAEREAKARA--ERE----AREAARVRDKQ 274
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
50-221 |
5.45e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.44 E-value: 5.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 50 ERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKE--YEAAVEQLKGDQIRIQGEERRKTlnEETKQHQARAQYQ 127
Cdd:PTZ00121 1421 DEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEeaKKKAEEAKKADEAKKKAEEAKKA--DEAKKKAEEAKKK 1498
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 128 DKLARQRYEDQLRQqqilneENLRKQEESvQKQEAMRKATiehemELRHKNELLRIEaeskararvERENADIIREQIRL 207
Cdd:PTZ00121 1499 ADEAKKAAEAKKKA------DEAKKAEEA-KKADEAKKAE-----EAKKADEAKKAE---------EKKKADELKKAEEL 1557
|
170
....*....|....
gi 1712965697 208 KAAEHRQTVLESIK 221
Cdd:PTZ00121 1558 KKAEEKKKAEEAKK 1571
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
825-955 |
5.89e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 46.86 E-value: 5.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 825 PVVEVTPPPSAEAPL---AEDVAAPVVEVTPPPSA-EAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPvievtPPPSAEV 900
Cdd:PRK14954 376 NDGGVAPSPAGSPDVkkkAPEPDLPQPDRHPGPAKpEAPGARPAELPSPASAPTPEQQPPVARSAPLP-----PSPQASA 450
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1712965697 901 PLAEDVAAPVVEVTpppSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEV 955
Cdd:PRK14954 451 PRNVASGKPGVDLG---SWQGKFMNFTRNGSRKQPVQASSSDAAQTGVFEGVAEL 502
|
|
| SPS1 |
COG0515 |
Serine/threonine protein kinase [Signal transduction mechanisms]; |
779-1020 |
5.98e-05 |
|
Serine/threonine protein kinase [Signal transduction mechanisms];
Pssm-ID: 440281 [Multi-domain] Cd Length: 482 Bit Score: 46.93 E-value: 5.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 779 DVIAPVVEVTPPPSAEapLAEDVAAPVVEV-------TP---PPSAEAPLAE--------DVAAPVVEVTPPPSAEAPLA 840
Cdd:COG0515 215 ELLRAHLREPPPPPSE--LRPDLPPALDAIvlralakDPeerYQSAAELAAAlravlrslAAAAAAAAAAAAAAAAAAAA 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 841 EDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAE 920
Cdd:COG0515 293 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAPAAAAAAAAAAAALAAAAAAAAAAAAAALLAAAAALAAAAAAAAAAAAAA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 921 APLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPPSAEVKCTLSDGLDSDNTVKA 1000
Cdd:COG0515 373 AAAAAAAAAAAALAAAAAAAAAAAAAALAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAAAAAAAAAARLLAAAAAAA 452
|
250 260
....*....|....*....|
gi 1712965697 1001 EPASETEHLAQPAASAETEA 1020
Cdd:COG0515 453 AAAAAAPLLAALLAAAALAA 472
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
865-1014 |
6.33e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 46.78 E-value: 6.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 865 AAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPlAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPL 944
Cdd:PRK07994 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPA-VPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 945 AEDVAAPVVEvtPPPSVEAPLAEDVAAPVVEVTPPPSAEVkctlsDGLDSDNTVKAEPASETEHLAQPAA 1014
Cdd:PRK07994 441 SEPAAASRAR--PVNSALERLASVRPAPSALEKAPAKKEA-----YRWKATNPVEVKKEPVATPKALKKA 503
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
673-861 |
7.53e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 46.79 E-value: 7.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 673 VPDVIAPIVEVTPPPSEEAVAAAPLVQDVITPVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSEEAV-AAAAAPL 751
Cdd:PRK12323 386 APAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAApAAAARPA 465
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 752 VQDVIAPVVEVTPPPSEEAAAAAPLVQDVIAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVtP 831
Cdd:PRK12323 466 AAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAP-A 544
|
170 180 190
....*....|....*....|....*....|
gi 1712965697 832 PPSAEAPLAEDVAAPVVEVTPPPSAEAPLA 861
Cdd:PRK12323 545 PAAAPAPRAAAATEPVVAPRPPRASASGLP 574
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
777-904 |
7.84e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 46.78 E-value: 7.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 777 VQDVIAPVVEVTPPPSAEAPLAEDVAAPVVEVTPP---PSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPP 853
Cdd:PRK07994 394 PQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQlqrAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAP 473
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1712965697 854 PSAEAPLAEdvAAPVVEVTPPPSAEPPlaedVVAPVIEVTPPPSAEVPLAE 904
Cdd:PRK07994 474 AKKEAYRWK--ATNPVEVKKEPVATPK----ALKKALEHEKTPELAAKLAA 518
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
776-891 |
7.94e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 46.73 E-value: 7.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 776 LVQDVIAPV-VEVTPPPSAEAPlaeDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSaeaPLAEDVAAPVVEVTPPP 854
Cdd:PRK14950 355 VIEALLVPVpAPQPAKPTAAAP---SPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPP---VPPRPVAPPVPHTPESA 428
|
90 100 110
....*....|....*....|....*....|....*..
gi 1712965697 855 SAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIE 891
Cdd:PRK14950 429 PKLTRAAIPVDEKPKYTPPAPPKEEEKALIADGDVLE 465
|
|
| RecA-like_Yta7-like |
cd19517 |
ATPase domain of Saccharomyces cerevisiae Yta7 and similar ATPase domains; Saccharomyces ... |
340-467 |
9.24e-05 |
|
ATPase domain of Saccharomyces cerevisiae Yta7 and similar ATPase domains; Saccharomyces cerevisiae Yta7 is a chromatin-associated AAA-ATPase involved in regulation of chromatin dynamics. Its human ortholog ANCCA/ATAD2 transcriptionally activates pathways of malignancy in a broad range of cancers. The RecA-like_Yta7 subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410925 [Multi-domain] Cd Length: 170 Bit Score: 44.04 E-value: 9.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 340 RNILMYGPPGTGKTLFAKKLAMHSGMDyaimtGGDVAPMGRDGVTAMHKvfdWANTSRRGL-------------LLFVDE 406
Cdd:cd19517 35 RGVLFHGPPGTGKTLMARALAAECSKG-----GQKVSFFMRKGADCLSK---WVGEAERQLrllfeeayrmqpsIIFFDE 106
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1712965697 407 ADAFLRKRST--EKISEDLRATLNAfLYRTGEQSNKFMLVLASNQPEQFDWAIN--DRIDEIVNF 467
Cdd:cd19517 107 IDGLAPVRSSkqEQIHASIVSTLLA-LMDGLDNRGQVVVIGATNRPDALDPALRrpGRFDREFYF 170
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
600-964 |
9.46e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 46.86 E-value: 9.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 600 PQAKDVVAPVVEVTPPPppsaevaapqiqdvitqvleamPPPSVEAAAPQAQDVATPIAEVTPPPSVEVEpplvpdviAP 679
Cdd:PHA03247 2686 RAARPTVGSLTSLADPP----------------------PPPPTPEPAPHALVSATPLPPGPAAARQASP--------AL 2735
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 680 IVEVTPPPSEEAVAAAPLVQDVITPVVEVTPPPSEeavaaaaaplvqdviAPVVEVTPPPSEEAVAAAAAPLVQDVIAPV 759
Cdd:PHA03247 2736 PAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPA---------------PPAAPAAGPPRRLTRPAVASLSESRESLPS 2800
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 760 VEVTPPPSEEAAAAAPLVQDVIAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlaedvAAPVVEVTPPPSAEAPL 839
Cdd:PHA03247 2801 PWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAP-----GGDVRRRPPSRSPAAKP 2875
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 840 AEDVAAPVVEVTPPPSAEAPlaEDVAAPVVEVTPPPSAEPPlaedvvapvIEVTPPPSAEVPLAEDVAAPVVEVTPPPSA 919
Cdd:PHA03247 2876 AAPARPPVRRLARPAVSRST--ESFALPPDQPERPPQPQAP---------PPPQPQPQPPPPPQPQPPPPPPPRPQPPLA 2944
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1712965697 920 EAPLAEDVAAPvVEVTPPPSAEAPLAEDVAAPVVEVTPP-PSVEAP 964
Cdd:PHA03247 2945 PTTDPAGAGEP-SGAVPQPWLGALVPGRVAVPRFRVPQPaPSREAP 2989
|
|
| PRK11633 |
PRK11633 |
cell division protein DedD; Provisional |
809-889 |
1.09e-04 |
|
cell division protein DedD; Provisional
Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 44.61 E-value: 1.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 809 TPPPSA-EAPLAEDVAAPVVEvtPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEP-PLAEDVV 886
Cdd:PRK11633 66 QPPEGAaEAVRAGDAAAPSLD--PATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPkPVVEEKA 143
|
...
gi 1712965697 887 APV 889
Cdd:PRK11633 144 APT 146
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
815-950 |
1.15e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 46.13 E-value: 1.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 815 EAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDvAAPVVEVTPPPSAEPPLAEDVVAPVIEVTP 894
Cdd:PRK07764 382 ERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQ-PAPAPAPAPAPPSPAGNAPAGGAPSPPPAA 460
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1712965697 895 PPSAEvplaedvAAPVVEVTPPPSA-EAPLAEDVAAPVVEVTPPPSAEAPLAEDVAA 950
Cdd:PRK07764 461 APSAQ-------PAPAPAAAPEPTAaPAPAPPAAPAPAAAPAAPAAPAAPAGADDAA 510
|
|
| RarA |
COG2256 |
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ... |
341-411 |
1.21e-04 |
|
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];
Pssm-ID: 441857 [Multi-domain] Cd Length: 439 Bit Score: 45.82 E-value: 1.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 341 NILMYGPPGTGKTLFAKKLAMHSGMDY----AIMtggdvapmgrDGVTAMHKVFDWANTSR---RGLLLFVDE------- 406
Cdd:COG2256 51 SMILWGPPGTGKTTLARLIANATDAEFvalsAVT----------SGVKDIREVIEEARERRaygRRTILFVDEihrfnka 120
|
....*.
gi 1712965697 407 -ADAFL 411
Cdd:COG2256 121 qQDALL 126
|
|
| PRK11633 |
PRK11633 |
cell division protein DedD; Provisional |
830-910 |
1.28e-04 |
|
cell division protein DedD; Provisional
Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 44.61 E-value: 1.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 830 TPPPSA-EAPLAEDVAAPVVEvtPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEV-PLAEDVA 907
Cdd:PRK11633 66 QPPEGAaEAVRAGDAAAPSLD--PATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPkPVVEEKA 143
|
...
gi 1712965697 908 APV 910
Cdd:PRK11633 144 APT 146
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
68-214 |
1.29e-04 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 45.90 E-value: 1.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 68 ALDLARMQEQSTQLEHQSKIkeyEAAVEQLKGDQIRIQGEERRKTLNEETKQ-HQARAQYQDKLAR--QRYEDQLRQQQI 144
Cdd:pfam07111 480 SLELEQLREERNRLDAELQL---SAHLIQQEVGRAREQGEAERQQLSEVAQQlEQELQRAQESLASvgQQLEVARQGQQE 556
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1712965697 145 LNEENLRKQEESVQKQEAMRKATIEH--EMELRHKNELlrieAESKAR---ARVERENADIIREQIRLKAAEHRQ 214
Cdd:pfam07111 557 STEEAASLRQELTQQQEIYGQALQEKvaEVETRLREQL----SDTKRRlneARREQAKAVVSLRQIQHRATQEKE 627
|
|
| RecA-like_fidgetin |
cd19523 |
ATPase domain of fidgetin; Fidgetin (FIGN) is a ATP-dependent microtubule severing protein. ... |
340-460 |
1.30e-04 |
|
ATPase domain of fidgetin; Fidgetin (FIGN) is a ATP-dependent microtubule severing protein. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410931 [Multi-domain] Cd Length: 163 Bit Score: 43.72 E-value: 1.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTG-GDVAPMGRDGVTAMHKVFDWANtSRRGLLLFVDEADAFLRKRSTE- 417
Cdd:cd19523 34 RSILLFGPRGTGKTLLGRCLASQLGATFLRLRGsTLVAKWAGEGEKILQASFLAAR-CRQPSVLFISDLDALLSSQDDEa 112
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1712965697 418 ----KISEDLRATLNAFLyrtGEQSNKFMLVLASNQPEQFDWAINDR 460
Cdd:cd19523 113 spvgRLQVELLAQLDGVL---GSGEDGVLVVCTTSKPEEIDESLRRY 156
|
|
| RecA-like_NVL_r1-like |
cd19518 |
first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL ... |
340-457 |
1.41e-04 |
|
first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL exists in two forms with N-terminal extensions of different lengths in mammalian cells. NVL has two alternatively spliced isoforms, a short form, NVL1, and a long form, NVL2. NVL2, the major species, is mainly present in the nucleolus, whereas NVL1 is nucleoplasmic. Each has an N-terminal domain, followed by two tandem ATPase domains; this subfamily includes the first of the two ATPase domains. NVL2 is involved in the biogenesis of the 60S ribosome subunit by associating specifically with ribosome protein L5 and modulating the function of DOB1. NVL2 is also required for telomerase assembly and the regulation of telomerase activity, and is involved in pre-rRNA processing. The role of NVL1 is unclear. This RecA-like_NVL_r1-like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410926 [Multi-domain] Cd Length: 169 Bit Score: 43.55 E-value: 1.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 340 RNILMYGPPGTGKTLFAKKLAMHSGMD-YAIMTGGDVAPMGRDGVTAMHKVFDWAnTSRRGLLLFVDEADAFLRKRST-- 416
Cdd:cd19518 35 RGVLLHGPPGCGKTMLANAIAGELKVPfLKISATEIVSGVSGESEEKIRELFDQA-ISNAPCIVFIDEIDAITPKRESaq 113
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1712965697 417 ----EKISEDLRATLNAFLYRtgEQSNKFMLVL-ASNQPEQFDWAI 457
Cdd:cd19518 114 remeRRIVSQLLTCMDELNNE--KTAGGPVLVIgATNRPDSLDPAL 157
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
822-933 |
1.44e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 45.57 E-value: 1.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 822 VAAPVVEVTPPPSAEAPlaeDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPsaePPLAEDVVAPVIEVTPPPSAEVP 901
Cdd:PRK14950 360 LVPVPAPQPAKPTAAAP---SPVRPTPAPSTRPKAAAAANIPPKEPVRETATPP---PVPPRPVAPPVPHTPESAPKLTR 433
|
90 100 110
....*....|....*....|....*....|..
gi 1712965697 902 LAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVE 933
Cdd:PRK14950 434 AAIPVDEKPKYTPPAPPKEEEKALIADGDVLE 465
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
341-452 |
1.73e-04 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 42.66 E-value: 1.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 341 NILMYGPPGTGKTLFAKKLA------------MHSGMDYAIMTGG-DVAPMG---RDG--VTAMhkvfdwantsRRGLLL 402
Cdd:pfam07728 1 GVLLVGPPGTGKTELAERLAaalsnrpvfyvqLTRDTTEEDLFGRrNIDPGGaswVDGplVRAA----------REGEIA 70
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1712965697 403 FVDEADaflrkrsteKISEDLRATLNAFLY-----------RTGEQSNKFMLVLASNQPEQ 452
Cdd:pfam07728 71 VLDEIN---------RANPDVLNSLLSLLDerrlllpdggeLVKAAPDGFRLIATMNPLDR 122
|
|
| CDC48 |
TIGR01243 |
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two ... |
340-482 |
1.88e-04 |
|
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Pssm-ID: 273521 [Multi-domain] Cd Length: 733 Bit Score: 45.67 E-value: 1.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVapMGR---DGVTAMHKVFDWANTSRRGlLLFVDEADAFLRKRS- 415
Cdd:TIGR01243 213 KGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEI--MSKyygESEERLREIFKEAEENAPS-IIFIDEIDAIAPKREe 289
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 416 -TEKISEDLRATLNAFLYRTGEQSnKFMLVLASNQPEQFDWAIN--DRIDEIVNFALPGPDERDRLVRLY 482
Cdd:TIGR01243 290 vTGEVEKRVVAQLLTLMDGLKGRG-RVIVIGATNRPDALDPALRrpGRFDREIVIRVPDKRARKEILKVH 358
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
731-946 |
1.95e-04 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 45.37 E-value: 1.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 731 PVVEVTPPPSEEAVAAAAAPlvqdVIAPVVEVTPPPSEEAAAAAPLVQDVIApvvEVTPPPSAEAPLAEDVAAPVVEVTP 810
Cdd:PRK12727 63 PATAAAPAPAPQAPTKPAAP----VHAPLKLSANANMSQRQRVASAAEDMIA---AMALRQPVSVPRQAPAAAPVRAASI 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 811 PPSAEAPLAedVAAPVVEVTPPPSAEAPLAEDV-AAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPV 889
Cdd:PRK12727 136 PSPAAQALA--HAAAVRTAPRQEHALSAVPEQLfADFLTTAPVPRAPVQAPVVAAPAPVPAIAAALAAHAAYAQDDDEQL 213
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1712965697 890 IevtpPPSAEVplaEDVAAPVVEVTP-PPSAEAPLAEDVAAPVVEVTPPPSAEAPLAE 946
Cdd:PRK12727 214 D----DDGFDL---DDALPQILPPAAlPPIVVAPAAPAALAAVAAAAPAPQNDEELKQ 264
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
50-214 |
1.96e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.60 E-value: 1.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 50 ERAAQAAKDLDKSRHAKEALDlARMQEQSTQLEHQSKIKEY-EAAVEQLKGDQIRIQGEER--RKTLNEETKQHQARAQY 126
Cdd:pfam12128 604 ERLDKAEEALQSAREKQAAAE-EQLVQANGELEKASREETFaRTALKNARLDLRRLFDEKQseKDKKNKALAERKDSANE 682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 127 Q-DKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMR-------------KATIEHEmELRHKNELLRIEAESKAR-- 190
Cdd:pfam12128 683 RlNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQvvegaldaqlallKAAIAAR-RSGAKAELKALETWYKRDla 761
|
170 180 190
....*....|....*....|....*....|....*
gi 1712965697 191 ---------ARVERENADIIR--EQIRLKAAEHRQ 214
Cdd:pfam12128 762 slgvdpdviAKLKREIRTLERkiERIAVRRQEVLR 796
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
815-883 |
2.26e-04 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 45.38 E-value: 2.26e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1712965697 815 EAPLAEDVAAPVVEVTPPPSAEAplAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAE 883
Cdd:COG5373 34 EAELAEAAEAASAPAEPEPEAAA--AATAAAPEAAPAPVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAA 100
|
|
| PRK13108 |
PRK13108 |
prolipoprotein diacylglyceryl transferase; Reviewed |
822-1007 |
2.40e-04 |
|
prolipoprotein diacylglyceryl transferase; Reviewed
Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 44.97 E-value: 2.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 822 VAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPP----LAEDVVAPVIEVTPPPS 897
Cdd:PRK13108 266 IGAVVYIILAPKGREAPGALRGSEYVVDEALEREPAELAAAAVASAASAVGPVGPGEPNqpddVAEAVKAEVAEVTDEVA 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 898 AEVPLAEDV----AAPVVEVTPPPSAEAPLAEDVAAPVVEVtpPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPV 973
Cdd:PRK13108 346 AESVVQVADrdgeSTPAVEETSEADIEREQPGDLAGQAPAA--HQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPI 423
|
170 180 190
....*....|....*....|....*....|....
gi 1712965697 974 VEVTPPPSAEVKCTLSDGLDSDNTVKAEPASETE 1007
Cdd:PRK13108 424 PDPAKPDELAVAGPGDDPAEPDGIRRQDDFSSRR 457
|
|
| PRK13108 |
PRK13108 |
prolipoprotein diacylglyceryl transferase; Reviewed |
801-964 |
2.53e-04 |
|
prolipoprotein diacylglyceryl transferase; Reviewed
Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 44.97 E-value: 2.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 801 VAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLA----EDVAAPVVEVTPPPS 876
Cdd:PRK13108 266 IGAVVYIILAPKGREAPGALRGSEYVVDEALEREPAELAAAAVASAASAVGPVGPGEPNQPddvaEAVKAEVAEVTDEVA 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 877 AEPPLAEDV----VAPVIEVTPPPSAEVPLAEDVAAPVVEVtpPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPV 952
Cdd:PRK13108 346 AESVVQVADrdgeSTPAVEETSEADIEREQPGDLAGQAPAA--HQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPI 423
|
170
....*....|....
gi 1712965697 953 VEVTPP--PSVEAP 964
Cdd:PRK13108 424 PDPAKPdeLAVAGP 437
|
|
| PKK |
pfam12474 |
Polo kinase kinase; This domain family is found in eukaryotes, and is approximately 140 amino ... |
69-218 |
2.54e-04 |
|
Polo kinase kinase; This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with pfam00069. Polo-like kinase 1 (Plx1) is essential during mitosis for the activation of Cdc25C, for spindle assembly, and for cyclin B degradation. This family is Polo kinase kinase (PKK) which phosphorylates Polo kinase and Polo-like kinase to activate them. PKK is a serine/threonine kinase.
Pssm-ID: 463600 [Multi-domain] Cd Length: 139 Bit Score: 42.16 E-value: 2.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 69 LDLARMQ-EQSTQLEHQSKIKEYEAAVEQLKgdqiRIQgeerrKTLNEETKQHQArAQYQDKLARQRYEDQLRQQQILne 147
Cdd:pfam12474 1 HQLQKEQqKDRFEQERQQLKKRYEKELEQLE----RQQ-----KQQIEKLEQRQT-QELRRLPKRIRAEQKKRLKMFR-- 68
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1712965697 148 ENLrKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVERENADIIREQIRLkAAEHRQTVLE 218
Cdd:pfam12474 69 ESL-KQEKKELKQEVEKLPKFQRKEAKRQRKEELELEQKHEELEFLQAQSEALERELQQL-QNEKRKELAE 137
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
733-899 |
2.99e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 44.86 E-value: 2.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 733 VEVTPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSeeaaaaaplvqdVIAPVVEVTPPPSAEAPLAEDVAAPVVEVTPP- 811
Cdd:PRK07994 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQA------------PAVPPPPASAPQQAPAVPLPETTSQLLAARQQl 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 812 --PSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPP--PSAEPPLAEDVVA 887
Cdd:PRK07994 430 qrAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVatPKALKKALEHEKT 509
|
170
....*....|..
gi 1712965697 888 PviEVTPPPSAE 899
Cdd:PRK07994 510 P--ELAAKLAAE 519
|
|
| MAP7 |
pfam05672 |
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is ... |
107-214 |
3.28e-04 |
|
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent.
Pssm-ID: 461709 [Multi-domain] Cd Length: 153 Bit Score: 42.34 E-value: 3.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 107 EERRKTLNEETKQHQARAQYQDKLARQRYEDQLRQ---QQILNEENLRKQEESVQKQEAMRKATIE---HEMELRHKNEL 180
Cdd:pfam05672 17 AEKRRQAREQREREEQERLEKEEEERLRKEELRRRaeeERARREEEARRLEEERRREEEERQRKAEeeaEEREQREQEEQ 96
|
90 100 110
....*....|....*....|....*....|....*..
gi 1712965697 181 LRIEA---ESKARARVERENADIIREQIRLKAAEHRQ 214
Cdd:pfam05672 97 ERLQKqkeEAEAKAREEAERQRQEREKIMQQEEQERL 133
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
633-985 |
3.35e-04 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 44.76 E-value: 3.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 633 QVLEAMPPP--SVEAAAPQAQDVATPIAEVTPPPSVEVEPPLVPDVIAPiveVTPPPSEEAVAAAP--LVQDVITPVVEV 708
Cdd:pfam03154 165 QILQTQPPVlqAQSGAASPPSPPPPGTTQAATAGPTPSAPSVPPQGSPA---TSQPPNQTQSTAAPhtLIQQTPTLHPQR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 709 TPPPSeeavaaaaaPLVQDVIAPvvevtPPPSEEAVAAAAAPLVQDVIAPV---VEVTPPPSEEAAAAAPLVQDVIAPVV 785
Cdd:pfam03154 242 LPSPH---------PPLQPMTQP-----PPPSQVSPQPLPQPSLHGQMPPMphsLQTGPSHMQHPVPPQPFPLTPQSSQS 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 786 EVTPPPSAEAPlaedVAAPVVEVTPPPSAEAPLAE--------DVAAPVVEVTPPPSAEAPLAED---------VAAP-- 846
Cdd:pfam03154 308 QVPPGPSPAAP----GQSQQRIHTPPSQSQLQSQQppreqplpPAPLSMPHIKPPPTTPIPQLPNpqshkhpphLSGPsp 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 847 --VVEVTPPPSAEAPLAEdvaapvVEVTPPPSAEPPLAEdvVAPVIEVTPPPSAEVPLAEDVAA--PVVEVTPPPSAEAP 922
Cdd:pfam03154 384 fqMNSNLPPPPALKPLSS------LSTHHPPSAHPPPLQ--LMPQSQQLPPPPAQPPVLTQSQSlpPPAASHPPTSGLHQ 455
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1712965697 923 LAEDVAAPVVEVTP--PPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPPSAEVK 985
Cdd:pfam03154 456 VPSQSPFPQHPFVPggPPPITPPSGPPTSTSSAMPGIQPPSSASVSSSGPVPAAVSCPLPPVQIK 520
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
336-411 |
3.37e-04 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 44.31 E-value: 3.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 336 NGLYRNILMYGPPGTGKTLFAKKLAMHSGMDY----AIMtggdvapmgrDGVTAMHKVFDWANTSR---RGLLLFVDE-- 406
Cdd:PRK13342 33 AGRLSSMILWGPPGTGKTTLARIIAGATDAPFealsAVT----------SGVKDLREVIEEARQRRsagRRTILFIDEih 102
|
90
....*....|.
gi 1712965697 407 ------ADAFL 411
Cdd:PRK13342 103 rfnkaqQDALL 113
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
794-862 |
3.55e-04 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 44.61 E-value: 3.55e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1712965697 794 EAPLAEDVAAPVVEVTPPPSAEAplAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAE 862
Cdd:COG5373 34 EAELAEAAEAASAPAEPEPEAAA--AATAAAPEAAPAPVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAA 100
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
49-214 |
3.62e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.66 E-value: 3.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 49 LERAAQAAKDLDKS-RHAKEALD-----LARMQEQSTQLEHQSKIKEYEAA-----VEQLKG--DQIRIQGEERRKTLNE 115
Cdd:TIGR02168 290 LYALANEISRLEQQkQILRERLAnlerqLEELEAQLEELESKLDELAEELAeleekLEELKEelESLEAELEELEAELEE 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 116 -ETKQHQARAQYQDklARQRYeDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVE 194
Cdd:TIGR02168 370 lESRLEELEEQLET--LRSKV-AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELE 446
|
170 180
....*....|....*....|
gi 1712965697 195 RENADIIREQIRLKAAEHRQ 214
Cdd:TIGR02168 447 EELEELQEELERLEEALEEL 466
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
633-942 |
3.64e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 44.46 E-value: 3.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 633 QVLEAMPPPSVEAAAPQAQDVATPIAEVTPPpsvevepplvpdviAPIVEVTPPPSEEAVAAAPLVQDVITPVVEVTPPP 712
Cdd:PRK07003 394 SAVPAVTAVTGAAGAALAPKAAAAAAATRAE--------------APPAAPAPPATADRGDDAADGDAPVPAKANARASA 459
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 713 SEEAVAAAAAPlvqdVIAPVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSEEAAAAAPlvQDVIAPVVEVTPPPS 792
Cdd:PRK07003 460 DSRCDERDAQP----PADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASR--EDAPAAAAPPAPEAR 533
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 793 AEAPLAedvAAPvvevtPPPSAEAPLAEDV-----------AAPVVEVTPPPSAEAPLAEDVAAPVVEVtPPPSAEAPLA 861
Cdd:PRK07003 534 PPTPAA---AAP-----AARAGGAAAALDVlrnagmrvssdRGARAAAAAKPAAAPAAAPKPAAPRVAV-QVPTPRARAA 604
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 862 EDVAAPVVEVTPPPSAE----PPLAEDVvapvievtpPPSAEVPL--------AEDVAAPVVEVTPPPSAEAPLAEDVAA 929
Cdd:PRK07003 605 TGDAPPNGAARAEQAAEsrgaPPPWEDI---------PPDDYVPLsadegfggPDDGFVPVFDSGPDDVRVAPKPADAPA 675
|
330
....*....|...
gi 1712965697 930 PVVEVTPPPSAEA 942
Cdd:PRK07003 676 PPVDTRPLPPAIP 688
|
|
| PRK11633 |
PRK11633 |
cell division protein DedD; Provisional |
865-973 |
4.45e-04 |
|
cell division protein DedD; Provisional
Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 43.07 E-value: 4.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 865 AAPVVevtPPPSAEPPLaeDVVAPV---IEVTPPPSA-EVPLAEDVAAPVVEvtPPPSAEAPLAEDVAAPVVEVTPPPSA 940
Cdd:PRK11633 40 AIPLV---PKPGDRDEP--DMMPAAtqaLPTQPPEGAaEAVRAGDAAAPSLD--PATVAPPNTPVEPEPAPVEPPKPKPV 112
|
90 100 110
....*....|....*....|....*....|....
gi 1712965697 941 EAPLAEDVAAPVVEVTPPPSVE-APLAEDVAAPV 973
Cdd:PRK11633 113 EKPKPKPKPQQKVEAPPAPKPEpKPVVEEKAAPT 146
|
|
| RecA-like_NSF-SEC18_r1-like |
cd19504 |
first of two ATPase domains of NSF and SEC18, and similar ATPase domains; ... |
340-457 |
5.00e-04 |
|
first of two ATPase domains of NSF and SEC18, and similar ATPase domains; N-ethylmaleimide-sensitive factor (NSF) and Saccharomyces cerevisiae Vesicular-fusion protein Sec18, key factors for eukaryotic trafficking, are ATPases and SNARE disassembly chaperones. NSF/Sec18 activate or prime SNAREs, the terminal catalysts of membrane fusion. Sec18/NSF associates with SNARE complexes through binding Sec17/alpha-SNAP. Sec18 has an N-terminal cap domain and two nucleotide-binding domains (D1 and D2) which form the two rings of the hexameric complex. The hydrolysis of ATP by D1 generates most of the energy necessary to disassemble inactive SNARE bundles, while the D2 ring binds ATP to stabilize the homohexamer. This subfamily includes the first (D1) ATPase domain of NSF/Sec18, and belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410912 [Multi-domain] Cd Length: 177 Bit Score: 42.09 E-value: 5.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 340 RNILMYGPPGTGKTLFAKKLA-MHSGMDYAIMTGGDVAP--MGrDGVTAMHKVFDWANTSRRGL-------LLFVDEADA 409
Cdd:cd19504 36 KGILLYGPPGTGKTLMARQIGkMLNAREPKIVNGPEILNkyVG-ESEANIRKLFADAEEEQRRLgansglhIIIFDEIDA 114
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1712965697 410 FLRKRSTEKISEDLRATL-NAFLYRTG--EQSNKFMLVLASNQPEQFDWAI 457
Cdd:cd19504 115 ICKQRGSMAGSTGVHDTVvNQLLSKIDgvEQLNNILVIGMTNRKDLIDEAL 165
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
762-921 |
5.20e-04 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 44.14 E-value: 5.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 762 VTPPPSEEAAAAAPLVQDVIAPVVEV-TPPPSAEAPlaedvaAPVVeVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPla 840
Cdd:pfam05109 488 VTPSPSPRDNGTESKAPDMTSPTSAVtTPTPNATSP------TPAV-TTPTPNATSPTLGKTSPTSAVTTPTPNATSP-- 558
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 841 edvaAPVVeVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPlaedvvaPVIEVTPPP-SAEVPLAEDVAAPVVeVTPPPSA 919
Cdd:pfam05109 559 ----TPAV-TTPTPNATIPTLGKTSPTSAVTTPTPNATSP-------TVGETSPQAnTTNHTLGGTSSTPVV-TSPPKNA 625
|
..
gi 1712965697 920 EA 921
Cdd:pfam05109 626 TS 627
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
40-200 |
5.28e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.16 E-value: 5.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 40 KWSNFDPTGLERAAQAAKDLDKSRHAKEALDLARM--QEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERRKTLNEET 117
Cdd:COG1196 614 RYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREvtLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEEL 693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 118 KQHQARAQYQDKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVEREN 197
Cdd:COG1196 694 ELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLE 773
|
...
gi 1712965697 198 ADI 200
Cdd:COG1196 774 REI 776
|
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
799-942 |
5.38e-04 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 43.60 E-value: 5.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 799 EDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAE 878
Cdd:NF040712 190 PDFGRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGPGAAPAAE 269
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1712965697 879 PPlaeDVVAPVIEVTPPPSAEVPLAEDVAAPVvevtppPSAEAPLAEDVAAPVVEVTPPPSAEA 942
Cdd:NF040712 270 PD---EATRDAGEPPAPGAAETPEAAEPPAPA------PAAPAAPAAPEAEEPARPEPPPAPKP 324
|
|
| PRK10819 |
PRK10819 |
transport protein TonB; Provisional |
803-922 |
5.46e-04 |
|
transport protein TonB; Provisional
Pssm-ID: 236768 [Multi-domain] Cd Length: 246 Bit Score: 42.75 E-value: 5.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 803 APVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEpPLA 882
Cdd:PRK10819 33 TSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPK-PVK 111
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1712965697 883 EDVVAPVIEVTPP-PSAEVPLAEDVAAPVVEVTPPPSAEAP 922
Cdd:PRK10819 112 KVEEQPKREVKPVePRPASPFENTAPARPTSSTATAAASKP 152
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
804-980 |
5.49e-04 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 43.83 E-value: 5.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 804 PVVEVTPPPsaeAPLAEDVAAPVVEVTPPPSAEAPLAEDVA------APVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSA 877
Cdd:PRK12727 63 PATAAAPAP---APQAPTKPAAPVHAPLKLSANANMSQRQRvasaaeDMIAAMALRQPVSVPRQAPAAAPVRAASIPSPA 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 878 EPPLAedVVAPVIEVTPPPSAEVPLAEDV-AAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDV-------- 948
Cdd:PRK12727 140 AQALA--HAAAVRTAPRQEHALSAVPEQLfADFLTTAPVPRAPVQAPVVAAPAPVPAIAAALAAHAAYAQDDdeqldddg 217
|
170 180 190
....*....|....*....|....*....|....*....
gi 1712965697 949 ----AAPVVEVTP---PPSVEAPLAEDVAAPVVEVTPPP 980
Cdd:PRK12727 218 fdldDALPQILPPaalPPIVVAPAAPAALAAVAAAAPAP 256
|
|
| RecA-like_PEX6_r2 |
cd19527 |
second of two ATPase domains of Peroxisomal biogenesis factor 6 (PEX6); PEX6(also known as ... |
342-457 |
5.87e-04 |
|
second of two ATPase domains of Peroxisomal biogenesis factor 6 (PEX6); PEX6(also known as Peroxin61)/PEX1 is a protein unfoldase; PEX6 and PEX1 form a heterohexameric Type-2 AAA-ATPase complex and are essential for peroxisome biogenesis as they are required for the import of folded proteins into the peroxisomal matrix. This subfamily represents the second ATPase domain of PEX6. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410935 [Multi-domain] Cd Length: 160 Bit Score: 41.73 E-value: 5.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 342 ILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMGRDGVTA-MHKVFDWANTSRRGLLLFvDEADAFLRKRST---- 416
Cdd:cd19527 29 ILLYGPPGTGKTLLAKAIATECSLNFLSVKGPELINMYIGESEAnVREVFQKARDAKPCVIFF-DELDSLAPSRGNsgds 107
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1712965697 417 ----EKISEDLRATLNAfLYRTGEQsnkFMLVLASNQPEQFDWAI 457
Cdd:cd19527 108 ggvmDRVVSQLLAELDG-MSSSGQD---VFVIGATNRPDLLDPAL 148
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
56-194 |
6.23e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.96 E-value: 6.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 56 AKDLDKSRhaKEALDLARMQEQSTQLEHQSKIKEYEaaVEQLKGDQIRIQgEERRKTLNEETKQHQaRAQYQDKLARQRY 135
Cdd:pfam17380 445 AREMERVR--LEEQERQQQVERLRQQEEERKRKKLE--LEKEKRDRKRAE-EQRRKILEKELEERK-QAMIEEERKRKLL 518
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1712965697 136 EDQL--RQQQILNEENLRKQEESVQK----------QEAMRKATIEHEM--ELRHKNELLRIEAES-KARARVE 194
Cdd:pfam17380 519 EKEMeeRQKAIYEEERRREAEEERRKqqemeerrriQEQMRKATEERSRleAMEREREMMRQIVESeKARAEYE 592
|
|
| PTZ00361 |
PTZ00361 |
26 proteosome regulatory subunit 4-like protein; Provisional |
340-475 |
6.78e-04 |
|
26 proteosome regulatory subunit 4-like protein; Provisional
Pssm-ID: 185575 [Multi-domain] Cd Length: 438 Bit Score: 43.22 E-value: 6.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGD-VAPMGRDG---VTAMHKVFDWANTSrrglLLFVDEADAFLRKR- 414
Cdd:PTZ00361 218 KGVILYGPPGTGKTLLAKAVANETSATFLRVVGSElIQKYLGDGpklVRELFRVAEENAPS----IVFIDEIDAIGTKRy 293
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965697 415 -STEKISEDLRATLNAFLYRTG--EQSNKFMLVLASNQPEQFDWAI--NDRIDEIVNFalPGPDER 475
Cdd:PTZ00361 294 dATSGGEKEIQRTMLELLNQLDgfDSRGDVKVIMATNRIESLDPALirPGRIDRKIEF--PNPDEK 357
|
|
| DUF4659 |
pfam15558 |
Domain of unknown function (DUF4659); This family of proteins is found in eukaryotes. Proteins ... |
68-213 |
6.78e-04 |
|
Domain of unknown function (DUF4659); This family of proteins is found in eukaryotes. Proteins in this family are typically between 427 and 674 amino acids in length. There are two completely conserved residues (D and I) that may be functionally important.
Pssm-ID: 464768 [Multi-domain] Cd Length: 374 Bit Score: 43.10 E-value: 6.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 68 ALDLARMQEQSTQLEHQskikeYEAAV---EQLKGDQIRIQGEERRKTLNEETKQHQARAQYQDKLARQRYE-----DQL 139
Cdd:pfam15558 11 ALMLARHKEEQRMRELQ-----QQAALaweELRRRDQKRQETLERERRLLLQQSQEQWQAEKEQRKARLGREerrraDRR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 140 RQQQILNE----------ENLRK----------------QEESVQKQEAMRKATIEHEMELRHKNELL----RIEAESKA 189
Cdd:pfam15558 86 EKQVIEKEsrwreqaedqENQRQeklerarqeaeqrkqcQEQRLKEKEEELQALREQNSLQLQERLEEachkRQLKEREE 165
|
170 180
....*....|....*....|....*
gi 1712965697 190 RARVEREN-ADIIREQIRLKAAEHR 213
Cdd:pfam15558 166 QKKVQENNlSELLNHQARKVLVDCQ 190
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
836-909 |
7.12e-04 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 43.84 E-value: 7.12e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1712965697 836 EAPLAEDVAAPVVEVTPPPSAEAplAEDVAAPVVEVTPPPSAEPPLAEDVVAPvievTPPPSAEVPLAEDVAAP 909
Cdd:COG5373 34 EAELAEAAEAASAPAEPEPEAAA--AATAAAPEAAPAPVPEAPAAPPAAAEAP----APAAAAPPAEAEPAAAP 101
|
|
| SPS1 |
COG0515 |
Serine/threonine protein kinase [Signal transduction mechanisms]; |
738-971 |
7.96e-04 |
|
Serine/threonine protein kinase [Signal transduction mechanisms];
Pssm-ID: 440281 [Multi-domain] Cd Length: 482 Bit Score: 43.08 E-value: 7.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 738 PPSEEAVAAAAAPLVQDVIAPVVEVTPPPSEEAAAAaplvqdVIAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAP 817
Cdd:COG0515 255 YQSAAELAAALRAVLRSLAAAAAAAAAAAAAAAAAA------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAPAAAAA 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 818 LAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPS 897
Cdd:COG0515 329 AAAAAAALAAAAAAAAAAAAAALLAAAAALAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAALAAAAAAAA 408
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1712965697 898 AEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAA 971
Cdd:COG0515 409 AAAAAAAAAAALAAAAAAAAAAAAAAAAAAAAAARLLAAAAAAAAAAAAAPLLAALLAAAALAAAAAAAALALA 482
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
71-214 |
8.87e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.39 E-value: 8.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 71 LARMQEQSTQ----LEHQSKIKEYEAAVEQLKGDQIRIQGEERRKTLNEETKQHQARAQYQDKLARQRyeDQLRQQQiln 146
Cdd:COG1196 202 LEPLERQAEKaeryRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAEL--EELRLEL--- 276
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1712965697 147 eENLRKQEESVQKQEAMRKATIEhEMELRHKNELLRIEAESKARARVERENADIIREQIRLKAAEHRQ 214
Cdd:COG1196 277 -EELELELEEAQAEEYELLAELA-RLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEEL 342
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
782-929 |
9.76e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 43.05 E-value: 9.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 782 APVVEVTPPPSAEAPLAEDVAAPVvevTPPPSAEAPLAEDVAAPvvEVTPPPsAEAPLAEdvAAPVVEVTPPPSAEAPLA 861
Cdd:PRK07764 385 LGVAGGAGAPAAAAPSAAAAAPAA---APAPAAAAPAAAAAPAP--AAAPQP-APAPAPA--PAPPSPAGNAPAGGAPSP 456
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1712965697 862 EDVAAPVVEVTPPPSAEPplaedvvapvievtPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAA 929
Cdd:PRK07764 457 PPAAAPSAQPAPAPAAAP--------------EPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAA 510
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
44-210 |
9.81e-04 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 42.94 E-value: 9.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 44 FDPTGLERAAQAAKDLDKSRHAKEALdlarMQEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERRKTLNEETKQHQAR 123
Cdd:COG2268 186 LDALGRRKIAEIIRDARIAEAEAERE----TEIAIAQANREAEEAELEQEREIETARIAEAEAELAKKKAEERREAETAR 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 124 AQyQDKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRK-ATIEHEMELRHKNELLRIEAESKARARVERENADIIR 202
Cdd:COG2268 262 AE-AEAAYEIAEANAEREVQRQLEIAEREREIELQEKEAEREeAELEADVRKPAEAEKQAAEAEAEAEAEAIRAKGLAEA 340
|
....*...
gi 1712965697 203 EQIRLKAA 210
Cdd:COG2268 341 EGKRALAE 348
|
|
| DUF3729 |
pfam12526 |
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins ... |
875-961 |
1.03e-03 |
|
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important.
Pssm-ID: 372164 [Multi-domain] Cd Length: 115 Bit Score: 40.06 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 875 PSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPvvevtPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlaedvAAPVVE 954
Cdd:pfam12526 29 FSPPESAHPDPPPPVGDPRPPVVDTPPPVSAVWVL-----PPPSEPAAPEPDLVPPVTGPAGPPSPLAP-----PAPAQK 98
|
....*..
gi 1712965697 955 VTPPPSV 961
Cdd:pfam12526 99 PPLPPPR 105
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
56-194 |
1.04e-03 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 42.49 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 56 AKDLDKSRHAKEALDLARMQEQstQLEHQSKIKEYEAavEQLKGDQIRIQGEERRKTLNEETKQHQARAQYQDKLARQRY 135
Cdd:PRK09510 74 AKRAEEQRKKKEQQQAEELQQK--QAAEQERLKQLEK--ERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKA 149
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1712965697 136 EDQLRQ-----QQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNEL-LRIEAESKARARVE 194
Cdd:PRK09510 150 EAEAKRaaaaaKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAkKKAEAEAKKKAAAE 214
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
50-210 |
1.12e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 50 ERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKGDQI-RIQGEERRKTLNEETKQhQARAQYQD 128
Cdd:COG4913 288 RRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLeQLEREIERLERELEERE-RRRARLEA 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 129 KLA---------RQRYEDQLRQ-QQILneENLRKQEESVQKQEAMRKATIEhemelRHKNELLRIEAEskaRARVERENA 198
Cdd:COG4913 367 LLAalglplpasAEEFAALRAEaAALL--EALEEELEALEEALAEAEAALR-----DLRRELRELEAE---IASLERRKS 436
|
170
....*....|..
gi 1712965697 199 DIIREQIRLKAA 210
Cdd:COG4913 437 NIPARLLALRDA 448
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
75-215 |
1.12e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.12 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 75 QEQSTQLEHQSKIKEYEAAVEQLKGD--QIRIQGEERRKTLNE-ETKQHQARAQYQDKLARQRYEDQLRQQQILNEENLR 151
Cdd:TIGR02168 667 KTNSSILERRREIEELEEKIEELEEKiaELEKALAELRKELEElEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE 746
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1712965697 152 KQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESK-----ARARVERENADIIREQIRLKAAEHRQT 215
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEieeleAQIEQLKEELKALREALDELRAELTLL 815
|
|
| SPS1 |
COG0515 |
Serine/threonine protein kinase [Signal transduction mechanisms]; |
675-946 |
1.23e-03 |
|
Serine/threonine protein kinase [Signal transduction mechanisms];
Pssm-ID: 440281 [Multi-domain] Cd Length: 482 Bit Score: 42.69 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 675 DVIAPIVEVTPPPSEEAVAAAPL-VQDVITPVVEVTP---PPSEEAvaaaaaplVQDVIAPVVEVTPPPSEEAVAAAAAP 750
Cdd:COG0515 215 ELLRAHLREPPPPPSELRPDLPPaLDAIVLRALAKDPeerYQSAAE--------LAAALRAVLRSLAAAAAAAAAAAAAA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 751 LVQDVIAPVVEVTPPPSEEAAAAAPLVQDVIAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVT 830
Cdd:COG0515 287 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAPAAAAAAAAAAAALAAAAAAAAAAAAAALLAAAAALAAAAAAAA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 831 PPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPV 910
Cdd:COG0515 367 AAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAALAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAAAAAAAAAARLLA 446
|
250 260 270
....*....|....*....|....*....|....*.
gi 1712965697 911 VEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAE 946
Cdd:COG0515 447 AAAAAAAAAAAAPLLAALLAAAALAAAAAAAALALA 482
|
|
| FliJ |
COG2882 |
Flagellar biosynthesis chaperone FliJ [Cell motility]; |
69-185 |
1.29e-03 |
|
Flagellar biosynthesis chaperone FliJ [Cell motility];
Pssm-ID: 442129 [Multi-domain] Cd Length: 142 Bit Score: 40.27 E-value: 1.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 69 LDLARMQEQSTQLEHQSKIKEYEAAVEQLkgDQIRIQGEERRKTLNEETKQHQARAQYQDklaRQRYEDQLRQ---QQIL 145
Cdd:COG2882 11 LDLAEKEEDEAARELGQAQQALEQAEEQL--EQLEQYREEYEQRLQQKLQQGLSAAQLRN---YQQFIARLDEaieQQQQ 85
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1712965697 146 NEENLRKQEESVQK--QEAMRK-ATIEHEMElRHKNELLRIEA 185
Cdd:COG2882 86 QVAQAEQQVEQARQawLEARQErKALEKLKE-RRREEERQEEN 127
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
566-714 |
1.39e-03 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 42.72 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 566 LHAEEEAQAKTLTPPKPEGTSGGKMGFVLPLSEAPQAKDVVAPVVEVTPPPPPSAEVAAPQIQDVITQVLEAMPPPSVEA 645
Cdd:PRK10811 855 VEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITES 934
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1712965697 646 AAPQAQDVA---TPIAEVTPPPSVEVEPPLVPDVIA--PIVEVTPPPSEEAVAAAPLVQDVITPVVEVTPPPSE 714
Cdd:PRK10811 935 DVAVAQEVAehaEPVVEPQDETADIEEAAETAEVVVaePEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPE 1008
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
751-870 |
1.40e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 42.49 E-value: 1.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 751 LVQDVIAPVVEVTPPPSEEAAAAAplVQDVIAPVVEVTPPPSAEAPLAEDVAAPVvevTPPPSAeaplAEDVAAPVVEVT 830
Cdd:PRK14950 355 VIEALLVPVPAPQPAKPTAAAPSP--VRPTPAPSTRPKAAAAANIPPKEPVRETA---TPPPVP----PRPVAPPVPHTP 425
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1712965697 831 PPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVE 870
Cdd:PRK14950 426 ESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALIADGDVLE 465
|
|
| PLN03209 |
PLN03209 |
translocon at the inner envelope of chloroplast subunit 62; Provisional |
826-1031 |
1.43e-03 |
|
translocon at the inner envelope of chloroplast subunit 62; Provisional
Pssm-ID: 178748 [Multi-domain] Cd Length: 576 Bit Score: 42.61 E-value: 1.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 826 VVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSA-----EPPLAEDVVapvievtPPPSAEV 900
Cdd:PLN03209 302 VVEVIAETTAPLTPMEELLAKIPSQRVPPKESDAADGPKPVPTKPVTPEAPSppieeEPPQPKAVV-------PRPLSPY 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 901 PLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVaaPVVEVTPPPS-VEAPLA-----EDVAAPvv 974
Cdd:PLN03209 375 TAYEDLKPPTSPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNV--PEVEPAQVEAkKTRPLSpyaryEDLKPP-- 450
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1712965697 975 eVTPPPSAEVKCTLSdgLDSDNTVKAEPASetehlAQPAASAETEAKMKKEDKTVSP 1031
Cdd:PLN03209 451 -TSPSPTAPTGVSPS--VSSTSSVPAVPDT-----APATAATDAAAPPPANMRPLSP 499
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
790-980 |
1.51e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 42.85 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 790 PPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVE------VTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAED 863
Cdd:PHA03307 19 EFFPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAgaaacdRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPA 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 864 VAAPVVEVTPPPSAEPPLAEDVVAPvieVTPPPSAEVPLAEDvAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAP 943
Cdd:PHA03307 99 SPAREGSPTPPGPSSPDPPPPTPPP---ASPPPSPAPDLSEM-LRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAAL 174
|
170 180 190
....*....|....*....|....*....|....*..
gi 1712965697 944 LAedvAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPP 980
Cdd:PHA03307 175 PL---SSPEETARAPSSPPAEPPPSTPPAAASPRPPR 208
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
878-991 |
1.52e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 42.49 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 878 EPPLAEDVVAPVIEVTP-PPSAEVPlaeDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSaeaPLAEDVAAPVVEVT 956
Cdd:PRK14950 352 ELAVIEALLVPVPAPQPaKPTAAAP---SPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPP---VPPRPVAPPVPHTP 425
|
90 100 110
....*....|....*....|....*....|....*.
gi 1712965697 957 PPPSVEAPLAEDV-AAPVVEVTPPPSAEVKCTLSDG 991
Cdd:PRK14950 426 ESAPKLTRAAIPVdEKPKYTPPAPPKEEEKALIADG 461
|
|
| GBP_C |
pfam02841 |
Guanylate-binding protein, C-terminal domain; Transcription of the anti-viral ... |
79-177 |
1.72e-03 |
|
Guanylate-binding protein, C-terminal domain; Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP.
Pssm-ID: 460721 [Multi-domain] Cd Length: 297 Bit Score: 41.50 E-value: 1.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 79 TQLEHQSKIKEYEAAVEQLKGDQIRIQgeerRKTLNEETKQHQARAQYQDKlarqRYEDQLRQ--------QQILNEENL 150
Cdd:pfam02841 193 LQTDQALTAKEKAIEAERAKAEAAEAE----QELLREKQKEEEQMMEAQER----SYQEHVKQliekmeaeREQLLAEQE 264
|
90 100
....*....|....*....|....*..
gi 1712965697 151 RKQEESVQKQEAMRKATIEHEMELRHK 177
Cdd:pfam02841 265 RMLEHKLQEQEELLKEGFKTEAESLQK 291
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
857-925 |
1.75e-03 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 42.29 E-value: 1.75e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1712965697 857 EAPLAEDVAAPVVEVTPPPSAEPplAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAE 925
Cdd:COG5373 34 EAELAEAAEAASAPAEPEPEAAA--AATAAAPEAAPAPVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAA 100
|
|
| PTZ00266 |
PTZ00266 |
NIMA-related protein kinase; Provisional |
107-313 |
1.78e-03 |
|
NIMA-related protein kinase; Provisional
Pssm-ID: 173502 [Multi-domain] Cd Length: 1021 Bit Score: 42.42 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 107 EERRKTLNEETKQHQARAQY-----QDKLARQRYEDQLRQQQILNEENLRKQEesVQKQEAMRKATIEHEMELRHKNELL 181
Cdd:PTZ00266 407 DDRKYPQDGATHCHAVNGHYggrvdKDHAERARIEKENAHRKALEMKILEKKR--IERLEREERERLERERMERIERERL 484
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 182 ---RIEAESKARARVERENADIIR-------EQIRLKAAEHRQTVLESIK---TAGAVFGEGfrafvsdwdkvtATVAGL 248
Cdd:PTZ00266 485 ereRLERERLERDRLERDRLDRLErervdrlERDRLEKARRNSYFLKGMEnglSAGGGPGDG------------PGVGAG 552
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965697 249 TLLAVGVYSARNATGV-AGRYIEARLGKPSLVRETSRFTVGEAIKHPVKtvKRLKSKPQDALEGVV 313
Cdd:PTZ00266 553 VGAGVGTSDGRNHSGVrSGIHCSIQSSARGGVHDSVRSGVHDSVRGGVH--DSMRSGVHDSLRGGV 616
|
|
| CCDC66 |
pfam15236 |
Coiled-coil domain-containing protein 66; This protein family, named Coiled-coil ... |
73-188 |
2.01e-03 |
|
Coiled-coil domain-containing protein 66; This protein family, named Coiled-coil domain-containing protein 66 (CCDC) refers to a protein domain found in eukaryotes, and is approximately 160 amino acids in length. CCDC66 protein is detected mainly in the inner segments of photoreceptors in many vertebrates including mice and humans. It has been found in dogs, that a mutation in the CCDC66 gene causes generalized progressive retinal atrophy (gPRA). This shows that the protein encoded for by this gene is vital for healthy vision and guards against photoreceptor cell degeneration. The structure of CCDC66 proteins includes a heptad repeat pattern which contains at least one coiled-coil domain. There are at least two or more alpha-helices which form a cable-like structure.
Pssm-ID: 434558 [Multi-domain] Cd Length: 154 Bit Score: 39.78 E-value: 2.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 73 RMQEQSTQLEHQSKIKEyeaaveqlkgdqiriQGEERRKTLNEETKQHQARAQYQD-KLARQ------RYEDQLRQQQIL 145
Cdd:pfam15236 47 RERKRQKALEHQNAIKK---------------QLEEKERQKKLEEERRRQEEQEEEeRLRREreeeqkQFEEERRKQKEK 111
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1712965697 146 NEENLRKQEESVQkqeAMRKAtieHEMELRHKNELLRIEAESK 188
Cdd:pfam15236 112 EEAMTRKTQALLQ---AMQKA---QELAQRLKQEQRIRELAEK 148
|
|
| DUF3729 |
pfam12526 |
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins ... |
791-877 |
2.08e-03 |
|
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important.
Pssm-ID: 372164 [Multi-domain] Cd Length: 115 Bit Score: 38.91 E-value: 2.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 791 PSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPvvevtPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlaedvAAPVVE 870
Cdd:pfam12526 29 FSPPESAHPDPPPPVGDPRPPVVDTPPPVSAVWVL-----PPPSEPAAPEPDLVPPVTGPAGPPSPLAP-----PAPAQK 98
|
....*..
gi 1712965697 871 VTPPPSA 877
Cdd:pfam12526 99 PPLPPPR 105
|
|
| HflB |
COG0465 |
ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]; |
342-360 |
2.13e-03 |
|
ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440233 [Multi-domain] Cd Length: 583 Bit Score: 41.95 E-value: 2.13e-03
|
| PTZ00436 |
PTZ00436 |
60S ribosomal protein L19-like protein; Provisional |
782-874 |
2.28e-03 |
|
60S ribosomal protein L19-like protein; Provisional
Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 41.47 E-value: 2.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 782 APVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVvEVTPPPS-AEAPL 860
Cdd:PTZ00436 256 PPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPA-KAAAPPAkAATPP 334
|
90
....*....|....
gi 1712965697 861 AEDVAAPVVEVTPP 874
Cdd:PTZ00436 335 AKAAAPPAKAAAAP 348
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
907-1026 |
2.40e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 41.77 E-value: 2.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 907 AAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlAEDVAAPVVEvtPPPSVEAPLAEDVAAPVVEVTPPPSAEVKc 986
Cdd:PRK07994 364 PLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVP-PPPASAPQQA--PAVPLPETTSQLLAARQQLQRAQGATKAK- 439
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1712965697 987 tLSDGLDSDNTVKAEPASETEHLAQPAASAETEAKMKKED 1026
Cdd:PRK07994 440 -KSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEA 478
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
50-222 |
2.44e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 2.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 50 ERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKG------DQIRIQGEERRKTLNEETKQHQAR 123
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARriraleQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 124 AQYQDKLARQRYEDQLRQQQ-----ILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLR--IEAESKARARVERE 196
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQpplalLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAalRAELEAERAELEAL 179
|
170 180
....*....|....*....|....*..
gi 1712965697 197 NADIIREQIRLKAAEH-RQTVLESIKT 222
Cdd:COG4942 180 LAELEEERAALEALKAeRQKLLARLEK 206
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
886-1033 |
2.46e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 41.77 E-value: 2.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 886 VAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPlAEDVAAPVVEvtPPPSAEAPLAEDVAAPVVEVTPPPSVEAPL 965
Cdd:PRK07994 364 PLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVP-PPPASAPQQA--PAVPLPETTSQLLAARQQLQRAQGATKAKK 440
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1712965697 966 AEDVAAPVVEVTPPPSAEVKCTLSDGLDSDNTVKAEPASETEHLAQPAASAETEAKMKKEDKTVSPPK 1033
Cdd:PRK07994 441 SEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEK 508
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
902-967 |
2.66e-03 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 41.91 E-value: 2.66e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965697 902 LAEDVAAPVVEVTPPPSAEAplAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAE 967
Cdd:COG5373 37 LAEAAEAASAPAEPEPEAAA--AATAAAPEAAPAPVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAA 100
|
|
| DUF3729 |
pfam12526 |
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins ... |
833-919 |
2.83e-03 |
|
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important.
Pssm-ID: 372164 [Multi-domain] Cd Length: 115 Bit Score: 38.52 E-value: 2.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 833 PSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPvvevtPPPSAEPPLAEDVVAPVIEVTPPPSAEVPlaedvAAPVVE 912
Cdd:pfam12526 29 FSPPESAHPDPPPPVGDPRPPVVDTPPPVSAVWVL-----PPPSEPAAPEPDLVPPVTGPAGPPSPLAP-----PAPAQK 98
|
....*..
gi 1712965697 913 VTPPPSA 919
Cdd:pfam12526 99 PPLPPPR 105
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
75-221 |
2.98e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.65 E-value: 2.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 75 QEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERRKTLNEETKQHQARAQyqdklARQRYEDQLRQQQI---------- 144
Cdd:pfam17380 306 EEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQE-----ERKRELERIRQEEIameisrmrel 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 145 --LNEENLRKQEESVQKQEAMRKATIEHE------MELRHKNELLRIEAESKARARVERENADIIREQIRLKAAE-HRQT 215
Cdd:pfam17380 381 erLQMERQQKNERVRQELEAARKVKILEEerqrkiQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEqERQQ 460
|
....*.
gi 1712965697 216 VLESIK 221
Cdd:pfam17380 461 QVERLR 466
|
|
| PRK12373 |
PRK12373 |
NADH-quinone oxidoreductase subunit E; |
793-909 |
3.15e-03 |
|
NADH-quinone oxidoreductase subunit E;
Pssm-ID: 237082 [Multi-domain] Cd Length: 400 Bit Score: 41.33 E-value: 3.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 793 AEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVvevtpPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVT 872
Cdd:PRK12373 208 ASKALAEDIGDTVKRIDGTEVPLLAPWQGDAAPV-----PPSEAARPKSADAETNAALKTPATAPKAAAKNAKAPEAQPV 282
|
90 100 110
....*....|....*....|....*....|....*..
gi 1712965697 873 PPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAP 909
Cdd:PRK12373 283 SGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIARP 319
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
730-860 |
3.19e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 41.24 E-value: 3.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 730 APVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSEEAAAaaplvqdviAPVVEVTPPPSAEAPLAEDVAAP---VV 806
Cdd:PRK14951 373 AAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPA---------APPAAAPPAPVAAPAAAAPAAAPaaaPA 443
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1712965697 807 EVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlAEDVAAPVVEVTPPPSAEAPL 860
Cdd:PRK14951 444 AVALAPAPPAQAAPETVAIPVRVAPEPAVASA-APAPAAAPAAARLTPTEEGDV 496
|
|
| McrB |
COG1401 |
5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB ... |
121-360 |
3.55e-03 |
|
5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB [Defense mechanisms];
Pssm-ID: 441011 [Multi-domain] Cd Length: 477 Bit Score: 41.29 E-value: 3.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 121 QARAQYQDKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVERE---- 196
Cdd:COG1401 2 LRPVLEFKFLIVGLRLKPLESEDAVRELGIRADDLRGAAELATRLAERLSEELLRADRAARATELVEELSAALEVVvlll 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 197 -----NADIIREQIRLKAAEHRQTVLESIKTAGAVFGEGFRAFVSDWDKVTATVAGLTLLAVGVYSARNATGVAGRYIEA 271
Cdd:COG1401 82 dlekvELNEKLALSEAAVAIEELYELEADSEIEAVGLLLELAERSDALEALERARLLLELADLEERAALETEVLEALEAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 272 RLG----KPSLVRETSRFTVGEAIKHPVKTVKRLKSKPQDALEGVVlsptlEERVRDVAIATRNTRqnnglyrNILMYGP 347
Cdd:COG1401 162 LEEllaaPEDLSADALAAELSAAEELYSEDLESEDDYLKDLLREKF-----EETLEAFLAALKTKK-------NVILAGP 229
|
250
....*....|...
gi 1712965697 348 PGTGKTLFAKKLA 360
Cdd:COG1401 230 PGTGKTYLARRLA 242
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
816-971 |
3.55e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 41.51 E-value: 3.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 816 APLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEvTPPPSAEPPLAEDVVAPviEVTPP 895
Cdd:PRK07764 364 LPSASDDERGLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPA-AAAAPAPAAAPQPAPAP--APAPA 440
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965697 896 PSAEVPLAEDVAAPVVEVTPPPSAEaPLAEDVAAPvvevtPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAA 971
Cdd:PRK07764 441 PPSPAGNAPAGGAPSPPPAAAPSAQ-PAPAPAAAP-----EPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAA 510
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
69-220 |
3.68e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.29 E-value: 3.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 69 LDLARMQEQSTQLEHQ-----SKIKEYEAAVEQLKGDQIRIQGE-----ERRKTLNEETKQHQAR-AQYQDKLARQRYED 137
Cdd:COG1579 10 LDLQELDSELDRLEHRlkelpAELAELEDELAALEARLEAAKTEledleKEIKRLELEIEEVEARiKKYEEQLGNVRNNK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 138 QL-----------RQQQILNEENLRKQEESVQKQEAMRKAtiehemelrhKNELLRIEAESKA-RARVERENADIIREQI 205
Cdd:COG1579 90 EYealqkeieslkRRISDLEDEILELMERIEELEEELAEL----------EAELAELEAELEEkKAELDEELAELEAELE 159
|
170
....*....|....*
gi 1712965697 206 RLKAAehRQTVLESI 220
Cdd:COG1579 160 ELEAE--REELAAKI 172
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
84-221 |
3.90e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.92 E-value: 3.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 84 QSKIKEYEAAVEQLKgDQIRIQGEERRKTLNEETKQ--HQARAQYQDKLARQRYEDQLRQQQILN-EENLRKQEESVQKQ 160
Cdd:PRK12704 30 EAKIKEAEEEAKRIL-EEAKKEAEAIKKEALLEAKEeiHKLRNEFEKELRERRNELQKLEKRLLQkEENLDRKLELLEKR 108
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1712965697 161 eamrkatiEHEMELRHKNELLRIEAESKARARVERenadIIREQIR-------LKAAEHRQTVLESIK 221
Cdd:PRK12704 109 --------EEELEKKEKELEQKQQELEKKEEELEE----LIEEQLQelerisgLTAEEAKEILLEKVE 164
|
|
| Mg_chelatase |
pfam01078 |
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that ... |
341-359 |
4.38e-03 |
|
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that catalyzes the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Pssm-ID: 426032 [Multi-domain] Cd Length: 207 Bit Score: 39.83 E-value: 4.38e-03
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
622-819 |
4.53e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 41.01 E-value: 4.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 622 VAAPQIQDVITQVLEAMPPPSVEAAAPQAQDVATPIAEVTPPPSVEVEPPLVPDVIAPIVEVTP-PPSEEAVAAAPLVQD 700
Cdd:PRK12323 389 AAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPaPAAAPAAAARPAAAG 468
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 701 VITPVVEVTPPPSEEAVAAAAAPLVQDviapvvevtPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSEEAAAAaplvQDV 780
Cdd:PRK12323 469 PRPVAAAAAAAPARAAPAAAPAPADDD---------PPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATA----DPD 535
|
170 180 190
....*....|....*....|....*....|....*....
gi 1712965697 781 IAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLA 819
Cdd:PRK12323 536 DAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLP 574
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
776-841 |
4.54e-03 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 41.14 E-value: 4.54e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965697 776 LVQDVIAPVVEVTPPPSAEAplAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAE 841
Cdd:COG5373 37 LAEAAEAASAPAEPEPEAAA--AATAAAPEAAPAPVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAA 100
|
|
| RecA-like_PEX1_r2 |
cd19526 |
second of two ATPase domains of Peroxisomal biogenesis factor 1 (PEX1); PEX1(also known as ... |
341-414 |
4.56e-03 |
|
second of two ATPase domains of Peroxisomal biogenesis factor 1 (PEX1); PEX1(also known as Peroxin-1)/PEX6 is a protein unfoldase; PEX1 and PEX6 form a heterohexameric Type-2 AAA-ATPase complex and are essential for peroxisome biogenesis as they are required for the import of folded proteins into the peroxisomal matrix. PEX-1 is required for stability of PEX5. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410934 [Multi-domain] Cd Length: 158 Bit Score: 38.95 E-value: 4.56e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965697 341 NILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAP--MGRDGvTAMHKVFDWANtSRRGLLLFVDEADAFLRKR 414
Cdd:cd19526 29 GILLYGPPGCGKTLLASAIASECGLNFISVKGPELLNkyIGASE-QNVRDLFSRAQ-SAKPCILFFDEFDSIAPKR 102
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
827-974 |
5.05e-03 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 40.72 E-value: 5.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 827 VEVTPPPSAE-APLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLaedvvapvievtPPPSAEVPLAED 905
Cdd:PRK06995 38 VEIVALADSDlAALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKR------------LTAQREQLVARA 105
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1712965697 906 VAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAApvvevTPPPSVEAPLAEDVAAPVV 974
Cdd:PRK06995 106 AAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAA-----AVADAVKARIERIVNDTVM 169
|
|
| PRK11855 |
PRK11855 |
dihydrolipoamide acetyltransferase; Reviewed |
801-951 |
5.07e-03 |
|
dihydrolipoamide acetyltransferase; Reviewed
Pssm-ID: 237000 [Multi-domain] Cd Length: 547 Bit Score: 40.58 E-value: 5.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 801 VAAPVVEV-----TPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPsaeapLAEDVAAPVVEVTPPP 875
Cdd:PRK11855 68 VGGLLAVIeaagaAAAAAAPAAAAAPAAAAAAAPAPAAAAPAAAAAAAGGGVVEVKVPD-----IGEITEVEVIEWLVKV 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 876 ----SAEPPLAE--------DVVAP----VIEVTPP---------PSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAP 930
Cdd:PRK11855 143 gdtvEEDQSLITvetdkatmEIPSPvagvVKEIKVKvgdkvsvgsLLVVIEVAAAAPAAAAAPAAAAPAAAAAAAPAPAP 222
|
170 180
....*....|....*....|.
gi 1712965697 931 VVEVTPPPSAEAPLAEDVAAP 951
Cdd:PRK11855 223 AAAAAPAAAAPAAAAAPGKAP 243
|
|
| ZipA |
COG3115 |
Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome ... |
861-976 |
5.14e-03 |
|
Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442349 [Multi-domain] Cd Length: 298 Bit Score: 40.06 E-value: 5.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 861 AEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEvtPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSA 940
Cdd:COG3115 48 DGIGEVRVVAAEAPERVEPEASFDAEDEVRE--PDQEEVDPLLDDEADIEAAPAEPVRWAGTAAAVEPAPEQEAYEEAGP 125
|
90 100 110
....*....|....*....|....*....|....*.
gi 1712965697 941 EAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEV 976
Cdd:COG3115 126 AGESAEQEDAPAEEPEAEAPAEEALAAELCAEPEEV 161
|
|
| PRK12373 |
PRK12373 |
NADH-quinone oxidoreductase subunit E; |
856-972 |
5.30e-03 |
|
NADH-quinone oxidoreductase subunit E;
Pssm-ID: 237082 [Multi-domain] Cd Length: 400 Bit Score: 40.56 E-value: 5.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 856 AEAPLAEDVAAPV--VEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEvplaedvAAPVVEVTPPPSAEAPLAEDVAAPVVE 933
Cdd:PRK12373 208 ASKALAEDIGDTVkrIDGTEVPLLAPWQGDAAPVPPSEAARPKSAD-------AETNAALKTPATAPKAAAKNAKAPEAQ 280
|
90 100 110
....*....|....*....|....*....|....*....
gi 1712965697 934 VTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAP 972
Cdd:PRK12373 281 PVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIARP 319
|
|
| RNA_helicase |
pfam00910 |
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding ... |
342-362 |
5.47e-03 |
|
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Pssm-ID: 459992 Cd Length: 102 Bit Score: 37.58 E-value: 5.47e-03
|
| PRK10819 |
PRK10819 |
transport protein TonB; Provisional |
782-901 |
5.69e-03 |
|
transport protein TonB; Provisional
Pssm-ID: 236768 [Multi-domain] Cd Length: 246 Bit Score: 39.67 E-value: 5.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 782 APVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEaPLA 861
Cdd:PRK10819 33 TSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPK-PVK 111
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1712965697 862 EDVAAPVVEVTPP-PSAEPPLAEDVVAPVIEVTPPPSAEVP 901
Cdd:PRK10819 112 KVEEQPKREVKPVePRPASPFENTAPARPTSSTATAAASKP 152
|
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
841-985 |
6.33e-03 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 40.14 E-value: 6.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 841 EDVAAPVVEVTPPPSAEAPLAEDVAAPVVevtPPPSAEPPLAEDvvapviEVTPPPSAEVPLAEDVAAPVVEVTPPPSAE 920
Cdd:NF040712 190 PDFGRPLRPLATVPRLAREPADARPEEVE---PAPAAEGAPATD------SDPAEAGTPDDLASARRRRAGVEQPEDEPV 260
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1712965697 921 APLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPPSAEVK 985
Cdd:NF040712 261 GPGAAPAAEPDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPKPK 325
|
|
| PRK10819 |
PRK10819 |
transport protein TonB; Provisional |
866-983 |
7.00e-03 |
|
transport protein TonB; Provisional
Pssm-ID: 236768 [Multi-domain] Cd Length: 246 Bit Score: 39.28 E-value: 7.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 866 APVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEaPLA 945
Cdd:PRK10819 33 TSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPK-PVK 111
|
90 100 110
....*....|....*....|....*....|....*....
gi 1712965697 946 EDVAAPVVEVTPP-PSVEAPLAEDVAAPVVEVTPPPSAE 983
Cdd:PRK10819 112 KVEEQPKREVKPVePRPASPFENTAPARPTSSTATAAAS 150
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
49-213 |
7.00e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.43 E-value: 7.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 49 LERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSK-IKEYEAAVEQLKgDQIRIQGEERRKTLNEETKQHQARAQYQ 127
Cdd:TIGR02168 696 LEKALAELRKELEELEEELEQLRKELEELSRQISALRKdLARLEAEVEQLE-ERIAQLSKELTELEAEIEELEERLEEAE 774
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 128 DKLARQryedqlrqqqilnEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAeSKARARVERENADIIREQIRL 207
Cdd:TIGR02168 775 EELAEA-------------EAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA-ANLRERLESLERRIAATERRL 840
|
....*.
gi 1712965697 208 KAAEHR 213
Cdd:TIGR02168 841 EDLEEQ 846
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
706-883 |
7.15e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 40.23 E-value: 7.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 706 VEVTPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSEEAVAAAAAplVQDVIAPVVEVTPPPSEEAAAAAPLVQDVIAPVV 785
Cdd:PRK07994 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPAS--APQQAPAVPLPETTSQLLAARQQLQRAQGATKAK 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 786 EVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPsaeaplaedVAAPVVEVTPPPSAEAPLAEDVA 865
Cdd:PRK07994 440 KSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPV---------EVKKEPVATPKALKKALEHEKTP 510
|
170
....*....|....*...
gi 1712965697 866 APVVEVTPPPSAEPPLAE 883
Cdd:PRK07994 511 ELAAKLAAEAIERDPWAA 528
|
|
| ClpX |
COG1219 |
ATP-dependent protease Clp, ATPase subunit ClpX [Posttranslational modification, protein ... |
341-360 |
7.65e-03 |
|
ATP-dependent protease Clp, ATPase subunit ClpX [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440832 [Multi-domain] Cd Length: 409 Bit Score: 40.03 E-value: 7.65e-03
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
920-983 |
8.15e-03 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 40.37 E-value: 8.15e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1712965697 920 EAPLAEDVAAPVVEVTPPPSAEAplAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPPSAE 983
Cdd:COG5373 34 EAELAEAAEAASAPAEPEPEAAA--AATAAAPEAAPAPVPEAPAAPPAAAEAPAPAAAAPPAEA 95
|
|
| PRK10819 |
PRK10819 |
transport protein TonB; Provisional |
845-964 |
8.22e-03 |
|
transport protein TonB; Provisional
Pssm-ID: 236768 [Multi-domain] Cd Length: 246 Bit Score: 39.28 E-value: 8.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 845 APVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEaPLA 924
Cdd:PRK10819 33 TSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPK-PVK 111
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1712965697 925 EDVAAPVVEVTPP-PSAEAPLAEDVAAPVVEVTPPPSVEAP 964
Cdd:PRK10819 112 KVEEQPKREVKPVePRPASPFENTAPARPTSSTATAAASKP 152
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
788-950 |
8.32e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 40.31 E-value: 8.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 788 TPPPSAEAPLAEDVAAPVvevTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDvaap 867
Cdd:PHA03247 360 TPPSSLEDLSAGRHHPKR---ASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPA---- 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 868 vvevTPPPSAEPPlAEDVVAPVIEVTPPPSAEVPL--AEDVAAPVV-----EVTPPPSAEAPLAE------DVAAPVVEV 934
Cdd:PHA03247 433 ----TPLPSAEPG-SDDGPAPPPERQPPAPATEPApdDPDDATRKAldalrERRPPEPPGADLAEllgrhpDTAGTVVRL 507
|
170
....*....|....*.
gi 1712965697 935 TpppSAEAPLAEDVAA 950
Cdd:PHA03247 508 A---AREAAIAREVAE 520
|
|
| clpX |
PRK05342 |
ATP-dependent Clp protease ATP-binding subunit ClpX; |
341-360 |
8.60e-03 |
|
ATP-dependent Clp protease ATP-binding subunit ClpX;
Pssm-ID: 235422 [Multi-domain] Cd Length: 412 Bit Score: 39.76 E-value: 8.60e-03
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
881-946 |
8.72e-03 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 39.98 E-value: 8.72e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965697 881 LAEDVVAPVIEVTPPPSAEVplAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAE 946
Cdd:COG5373 37 LAEAAEAASAPAEPEPEAAA--AATAAAPEAAPAPVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAA 100
|
|
| DUF3729 |
pfam12526 |
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins ... |
896-982 |
9.19e-03 |
|
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important.
Pssm-ID: 372164 [Multi-domain] Cd Length: 115 Bit Score: 36.98 E-value: 9.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 896 PSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPvvevtPPPSAEAPLAEDVAAPVVEVTPPPSVEAPlaedvAAPVVE 975
Cdd:pfam12526 29 FSPPESAHPDPPPPVGDPRPPVVDTPPPVSAVWVL-----PPPSEPAAPEPDLVPPVTGPAGPPSPLAP-----PAPAQK 98
|
....*..
gi 1712965697 976 VTPPPSA 982
Cdd:pfam12526 99 PPLPPPR 105
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
787-870 |
9.28e-03 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 40.26 E-value: 9.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965697 787 VTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDV-- 864
Cdd:PRK12270 42 AAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPlr 121
|
....*...
gi 1712965697 865 --AAPVVE 870
Cdd:PRK12270 122 gaAAAVAK 129
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
335-359 |
9.39e-03 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 39.45 E-value: 9.39e-03
10 20
....*....|....*....|....*
gi 1712965697 335 NNGLYRNILMYGPPGTGKTLFAKKL 359
Cdd:COG1474 47 RGERPSNVLIYGPTGTGKTAVAKYV 71
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
335-369 |
9.71e-03 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 40.09 E-value: 9.71e-03
10 20 30
....*....|....*....|....*....|....*
gi 1712965697 335 NNGLyrNILMYGPPGTGKTLFAKklAMHSgmdYAI 369
Cdd:COG1221 128 PKGL--HTLILGPTGVGKSFFAE--LMYE---YAI 155
|
|
| YifB |
COG0606 |
Predicted Mg-chelatase, contains ChlI-like and ATPase domains, YifB family [Posttranslational ... |
341-359 |
9.77e-03 |
|
Predicted Mg-chelatase, contains ChlI-like and ATPase domains, YifB family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440371 [Multi-domain] Cd Length: 502 Bit Score: 39.64 E-value: 9.77e-03
|
| |
