|
Name |
Accession |
Description |
Interval |
E-value |
| ATAD3_N |
pfam12037 |
ATPase family AAA domain-containing protein 3, N-terminal; This is the conserved N-terminal ... |
35-280 |
1.74e-136 |
|
ATPase family AAA domain-containing protein 3, N-terminal; This is the conserved N-terminal domain of ATPase family AAA domain-containing protein 3 (ATAD3) which is involved in dimerization and interacts with the inner surface of the outer mitochondrial membrane. This domain is found associated with the AAA ATPase domain (pfam00004). ATAD3 is essential for mitochondrial network organization, mitochondrial metabolism and cell growth at organizm and cellular level. It may also play an important role in mitochondrial protein synthesis.
Pssm-ID: 463442 [Multi-domain] Cd Length: 264 Bit Score: 410.14 E-value: 1.74e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 35 DKPKDKWSNFDPTGLERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERRKTLN 114
Cdd:pfam12037 14 DKPRTAYSGFDPEALERAAKAARELESSPHAKKALELMKKQEQTRQAELQAKIKEYEAAQEQLKIERQRVEYEERRKTLQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 115 EETKQHQARAQYQDKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMR-----KATIEHEMELRHKNELLRIEAESKA 189
Cdd:pfam12037 94 EETKQKQQRAQYQDELARKRYQDQLEAQRRRNEELLRKQEESVAKQEAMRiqaqrRQTEEHEAELRRETERAKAEAEAEA 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 190 RARVERENADIIREQIRLKAAEHRQTVLESIKTAGAVFGEGFRAFVSDWDKVTATVAGLTLLAVGVYSARNATGVAGRYI 269
Cdd:pfam12037 174 RAKEERENEDLNLEQLREKANEERETVLESINTAGSHIGGGLRALLTDWDKLVAAVGGLTALAAGVYTAKEGTGVAWRYI 253
|
250
....*....|.
gi 1712965705 270 EARLGKPSLVR 280
Cdd:pfam12037 254 EARLGKPSLVR 264
|
|
| RecA-like_ATAD3-like |
cd19512 |
ATPase domains of ATPase AAA-domain protein 3A (ATAD3A), -3B, and -3C, and similar ATPase ... |
318-467 |
7.09e-108 |
|
ATPase domains of ATPase AAA-domain protein 3A (ATAD3A), -3B, and -3C, and similar ATPase domains; ATPase AAA-domain protein 3 (ATAD3) is a ubiquitously expressed mitochondrial protein involved in mitochondrial dynamics, DNA-nucleoid structural organization, cholesterol transport and steroidogenesis. The ATAD3 gene family in human comprises three paralog genes: ATAD3A, ATAD3B and ATAD3C. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410920 [Multi-domain] Cd Length: 150 Bit Score: 330.64 E-value: 7.09e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 318 LEERVRDVAIATRNTRQNNGLYRNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMGRDGVTAMHKVFDWANTSR 397
Cdd:cd19512 1 LEARVRDIAIATRNTKKNKGLYRNILFYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVAPMGREGVTAIHKVFDWANTSR 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 398 RGLLLFVDEADAFLRKRSTEKISEDLRATLNAFLYRTGEQSNKFMLVLASNQPEQFDWAINDRIDEIVNF 467
Cdd:cd19512 81 RGLLLFVDEADAFLRKRSTEKISEDLRAALNAFLYRTGEQSNKFMLVLASNQPEQFDWAINDRIDEMVEF 150
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
318-467 |
1.01e-37 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 138.57 E-value: 1.01e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 318 LEERVRDVAIATRNTRQNNGLYRNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMGR-DGVTAMHKVFDWANTS 396
Cdd:cd19481 5 LREAVEAPRRGSRLRRYGLGLPKGILLYGPPGTGKTLLAKALAGELGLPLIVVKLSSLLSKYVgESEKNLRKIFERARRL 84
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1712965705 397 RRGLLLFvDEADAFLRKRSTEKISEDLRATLNAFLYRT--GEQSNKFMLVLASNQPEQFDWAIND--RIDEIVNF 467
Cdd:cd19481 85 APCILFI-DEIDAIGRKRDSSGESGELRRVLNQLLTELdgVNSRSKVLVIAATNRPDLLDPALLRpgRFDEVIEF 158
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
309-563 |
1.50e-29 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 118.06 E-value: 1.50e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 309 LEGVVLSPTLEERVRDVaiaTRNTRQNNGLY-------RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVapMGR- 380
Cdd:COG1223 1 LDDVVGQEEAKKKLKLI---IKELRRRENLRkfglwppRKILFYGPPGTGKTMLAEALAGELKLPLLTVRLDSL--IGSy 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 381 --DGVTAMHKVFDWANtsRRGLLLFVDEADAFLRKRSTEKISEDLRATLNAFLYRTGEQSNKFMLVLASNQPEQFDWAIN 458
Cdd:COG1223 76 lgETARNLRKLFDFAR--RAPCVIFFDEFDAIAKDRGDQNDVGEVKRVVNALLQELDGLPSGSVVIAATNHPELLDSALW 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 459 DRIDEIVNFALPGPDERDRLVRLYFDKYVLEpatggrqrmklaqFDYIAKcsEIAKRTEGMSGREISKLGVAWQAAAYSS 538
Cdd:COG1223 154 RRFDEVIEFPLPDKEERKEILELNLKKFPLP-------------FELDLK--KLAKKLEGLSGADIEKVLKTALKKAILE 218
|
250 260
....*....|....*....|....*
gi 1712965705 539 EDGVLTEAMIDArvddAVKQHRQKM 563
Cdd:COG1223 219 DREKVTKEDLEE----ALKQRKERK 239
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
154-558 |
9.11e-29 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 120.02 E-value: 9.11e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 154 EESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVERENADIIREQIRLKAAEHRQTVLESIKTAGAVFGEGFRA 233
Cdd:COG0464 4 LLALAVALALALLLLDDAALRLLLLLLLALAAALLLLLLLLLLLLLALLLVELLLLLLSGALAALLLLALLLLALLALLA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 234 FVSDWDKVTATVAGLTLLAVGVYSARNATGVAGRYIEARLGKPSLVRETSRFTVGEAIKHPVKTVKRLKSkpqDALEGVV 313
Cdd:COG0464 84 ALLSALELLLLGELLLLLLLLLLLLLLLLDLERALLELLRESAEALALAAPLVTYEDIGGLEEELLELRE---AILDDLG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 314 LSPTLEERVRDVAIATRN---TRQNNGLY--RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVapMGRD-GVTA-- 385
Cdd:COG0464 161 GLEEVKEELRELVALPLKrpeLREEYGLPppRGLLLYGPPGTGKTLLARALAGELGLPLIEVDLSDL--VSKYvGETEkn 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 386 MHKVFDWANTSRRGLLLFvDEADAFLRKRSTEKiSEDLRATLNAFLYRTGEQSNKFMLVLASNQPEQFDWAINDRIDEIV 465
Cdd:COG0464 239 LREVFDKARGLAPCVLFI-DEADALAGKRGEVG-DGVGRRVVNTLLTEMEELRSDVVVIAATNRPDLLDPALLRRFDEII 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 466 NFALPGPDERDRLVRLYFDKYVLEPAtggrqrmklaqfdyiAKCSEIAKRTEGMSGREISKLGV-AWQAAAYSSEDGVLT 544
Cdd:COG0464 317 FFPLPDAEERLEIFRIHLRKRPLDED---------------VDLEELAEATEGLSGADIRNVVRrAALQALRLGREPVTT 381
|
410
....*....|....*.
gi 1712965705 545 EAMIDA--RVDDAVKQ 558
Cdd:COG0464 382 EDLLEAleREDIFLKR 397
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
342-467 |
3.64e-22 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 93.04 E-value: 3.64e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 342 ILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMGR-DGVTAMHKVFDWANTSRRGlLLFVDEADAFLRKRSTEKIS 420
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVgESEKRLRELFEAAKKLAPC-VIFIDEIDALAGSRGSGGDS 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1712965705 421 EDLRaTLNAFLYRT-GEQSN--KFMLVLASNQPEQFDWAINDRIDEIVNF 467
Cdd:pfam00004 80 ESRR-VVNQLLTELdGFTSSnsKVIVIAATNRPDKLDPALLGRFDRIIEF 128
|
|
| RPT1 |
COG1222 |
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ... |
342-564 |
3.73e-21 |
|
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440835 [Multi-domain] Cd Length: 326 Bit Score: 95.84 E-value: 3.73e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 342 ILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPM--GrDGVTAMHKVFDWANTSRRGLLLFvDEADAFLRKRSTEKI 419
Cdd:COG1222 115 VLLYGPPGTGKTLLAKAVAGELGAPFIRVRGSELVSKyiG-EGARNVREVFELAREKAPSIIFI-DEIDAIAARRTDDGT 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 420 SEDLRATLNAFLYRT-GEQSNKFMLVL-ASNQPEQFDWAI--NDRIDEIVNFALPGPDERDRLVRLYfdkyvlepatggR 495
Cdd:COG1222 193 SGEVQRTVNQLLAELdGFESRGDVLIIaATNRPDLLDPALlrPGRFDRVIEVPLPDEEAREEILKIH------------L 260
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 496 QRMKLA-QFDYiakcSEIAKRTEGMSGREISKlgVAWQAAAYSSEDGVLTEAMIDarVDDAVKQHRQKMD 564
Cdd:COG1222 261 RDMPLAdDVDL----DKLAKLTEGFSGADLKA--IVTEAGMFAIREGRDTVTMED--LEKAIEKVKKKTE 322
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
723-909 |
2.49e-15 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 80.85 E-value: 2.49e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 723 PLVQDVIAPVVEVTPPPSAEAP--LAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLA----EDVAAPVV 796
Cdd:PRK10811 846 PVVRPQDVQVEEQREAEEVQVQpvVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVEtthpEVIAAPVT 925
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 797 EvtpPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDvVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVA 876
Cdd:PRK10811 926 E---QPQVITESDVAVAQEVAEHAEPVVEPQDETAD-IEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEV 1001
|
170 180 190
....*....|....*....|....*....|....*.
gi 1712965705 877 APVVEVTPPPS---AEAPLAEdvaAPVVEVTPPPSV 909
Cdd:PRK10811 1002 APAQVPEATVEhnhATAPMTR---APAPEYVPEAPR 1034
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
756-927 |
9.39e-15 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 79.31 E-value: 9.39e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 756 VTPPpsAEAPLAEDVAAPVVEVTPPpsaeapLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVA 835
Cdd:PRK10811 847 VVRP--QDVQVEEQREAEEVQVQPV------VAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPE 918
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 836 PVIE-VTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVaAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLA 914
Cdd:PRK10811 919 VIAApVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADI-EEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAV 997
|
170
....*....|...
gi 1712965705 915 EDVAAPVVEVTPP 927
Cdd:PRK10811 998 EPEVAPAQVPEAT 1010
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
702-886 |
1.08e-14 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 78.93 E-value: 1.08e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 702 ITPVVEVTPPPSEEAVAAAAAPLVQDV-IAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLA----EDVAAPVVE 776
Cdd:PRK10811 847 VVRPQDVQVEEQREAEEVQVQPVVAEVpVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVEtthpEVIAAPVTE 926
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 777 vtpPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVaAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAA 856
Cdd:PRK10811 927 ---QPQVITESDVAVAQEVAEHAEPVVEPQDETADI-EEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVA 1002
|
170 180 190
....*....|....*....|....*....|...
gi 1712965705 857 PVVEVTPPPS---AEAPLAEdvaAPVVEVTPPP 886
Cdd:PRK10811 1003 PAQVPEATVEhnhATAPMTR---APAPEYVPEA 1032
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
735-928 |
3.06e-14 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 77.39 E-value: 3.06e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 735 VTPPpsAEAPLAEDVAAPVVEVTPPpsaeapLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLA----E 810
Cdd:PRK10811 847 VVRP--QDVQVEEQREAEEVQVQPV------VAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVEtthpE 918
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 811 DVAAPVVEvtpppsaEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEA 890
Cdd:PRK10811 919 VIAAPVTE-------QPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEV 991
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1712965705 891 PlAEDVAAPVVEvtPPPSVEAPLAEDVA------APVVEVTPPP 928
Cdd:PRK10811 992 E-TVTAVEPEVA--PAQVPEATVEHNHAtapmtrAPAPEYVPEA 1032
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
734-931 |
1.69e-13 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 74.53 E-value: 1.69e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 734 EVTPPPSAEAPLAEDV---AAPVVEVTPPPSAEAPLAedvAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAE 810
Cdd:PRK12323 371 GAGPATAAAAPVAQPApaaAAPAAAAPAPAAPPAAPA---AAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGA 447
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 811 DVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAE---VPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPS 887
Cdd:PRK12323 448 PAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAApaaAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIP 527
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1712965705 888 AEAPLAEDVAAPVVEVTPPPSvEAPLAEDVAAPVVEVTPPPSAE 931
Cdd:PRK12323 528 DPATADPDDAFETLAPAPAAA-PAPRAAAATEPVVAPRPPRASA 570
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
646-985 |
3.49e-13 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 74.20 E-value: 3.49e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 646 AAPQAQDVATPIAEVTPPPSVEVEPPLVPDVIAPivevTPPPSEEAVAAAPLVQDVITPVVEVTPPPSEEAVAAAAAPL- 724
Cdd:PHA03247 2591 APPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAP----DPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRr 2666
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 725 VQDVIAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEaPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSA 804
Cdd:PHA03247 2667 ARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPP-PTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVP 2745
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 805 EAPlaedvAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTP 884
Cdd:PHA03247 2746 AGP-----ATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPP 2820
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 885 PPSAEAPLAEDVAA-PVVEVTPPPSVEAPLA-EDVAAPVVEVT--PPPSAEVKctlsdgldsdnTVKAEPASETEHLAQP 960
Cdd:PHA03247 2821 AASPAGPLPPPTSAqPTAPPPPPGPPPPSLPlGGSVAPGGDVRrrPPSRSPAA-----------KPAAPARPPVRRLARP 2889
|
330 340
....*....|....*....|....*
gi 1712965705 961 AASAETEAKMKKEDKTVSPPKDGTP 985
Cdd:PHA03247 2890 AVSRSTESFALPPDQPERPPQPQAP 2914
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
656-865 |
1.52e-12 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 71.99 E-value: 1.52e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 656 PIAEVTPPPSVEVEPPLVPDVIAPIVEVTPPPSEEAVAAAPLVQDVITPVVEvtpppseEAVAAaaaplvqdviAPVVEV 735
Cdd:PRK10811 846 PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEE-------PVVVA----------EPQPEE 908
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 736 TPPPSAEAPlaEDVAAPVVEvtpPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVaAPVVEVTPPPSAEAPLAEDVAAP 815
Cdd:PRK10811 909 VVVVETTHP--EVIAAPVTE---QPQVITESDVAVAQEVAEHAEPVVEPQDETADI-EEAAETAEVVVAEPEVVAQPAAP 982
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1712965705 816 VVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPP 865
Cdd:PRK10811 983 VVAEVAAEVETVTAVEPEVAPAQVPEATVEHNHATAPMTRAPAPEYVPEA 1032
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
807-980 |
4.64e-12 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 70.45 E-value: 4.64e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 807 PLAEDVAAPVVEVTPPP--SAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLA----EDVAAPVV 880
Cdd:PRK10811 846 PVVRPQDVQVEEQREAEevQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVEtthpEVIAAPVT 925
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 881 EVTPP-PSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPPsaevkctlsdgldsdntVKAEPASETEHLAQ 959
Cdd:PRK10811 926 EQPQViTESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPE-----------------VVAQPAAPVVAEVA 988
|
170 180
....*....|....*....|.
gi 1712965705 960 PAASAETEAKMKKEDKTVSPP 980
Cdd:PRK10811 989 AEVETVTAVEPEVAPAQVPEA 1009
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
777-932 |
2.76e-11 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 67.76 E-value: 2.76e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 777 VTPPpsAEAPLAEDVAAPVVEVTPPpsaeapLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLA----E 852
Cdd:PRK10811 847 VVRP--QDVQVEEQREAEEVQVQPV------VAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVEtthpE 918
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 853 DVAAPVVEvtpppsaEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPPSAEV 932
Cdd:PRK10811 919 VIAAPVTE-------QPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEV 991
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
339-469 |
3.06e-11 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 62.55 E-value: 3.06e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 339 YRNILMYGPPGTGKTLFAKKLAMHSG--------MDYAIMTGGDVapMGRDGVTAMHKVFDWANTSRRGLLLFVDEADAF 410
Cdd:cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFrpgapflyLNASDLLEGLV--VAELFGHFLVRLLFELAEKAKPGVLFIDEIDSL 96
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1712965705 411 lrkrsTEKISEDLRATLNAFLYRTGEQSNkFMLVLASNQPE--QFDWAINDRIDEIVNFAL 469
Cdd:cd00009 97 -----SRGAQNALLRVLETLNDLRIDREN-VRVIGATNRPLlgDLDRALYDRLDIRIVIPL 151
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
738-871 |
5.75e-11 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 66.28 E-value: 5.75e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 738 PPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEdvAAPVV 817
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAP--AAAPA 443
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1712965705 818 EVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPlAEDVAAPVVEVTPPPSAEAPL 871
Cdd:PRK14951 444 AVALAPAPPAQAAPETVAIPVRVAPEPAVASA-APAPAAAPAAARLTPTEEGDV 496
|
|
| PTZ00436 |
PTZ00436 |
60S ribosomal protein L19-like protein; Provisional |
771-900 |
6.53e-11 |
|
60S ribosomal protein L19-like protein; Provisional
Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 65.36 E-value: 6.53e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 771 AAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPL 850
Cdd:PTZ00436 220 AAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAP 299
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1712965705 851 AEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPV 900
Cdd:PTZ00436 300 AKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAAPV 349
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
622-817 |
7.60e-11 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 66.22 E-value: 7.60e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 622 VAAPQIQDVITQvleamPPPSVEAAAPQAQDVATPiAEVTPPPSVEVEPPLVPDVIAPIVEVTPPPSEEAVAAAPLVQDV 701
Cdd:PRK10811 847 VVRPQDVQVEEQ-----REAEEVQVQPVVAEVPVA-AAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVI 920
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 702 ITPVVEVTPPPSEEavaaaAAPLVQDVIAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEV-TPP 780
Cdd:PRK10811 921 AAPVTEQPQVITES-----DVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVeTVT 995
|
170 180 190
....*....|....*....|....*....|....*....
gi 1712965705 781 PSAEAPLAEDVAAPVVE--VTPPPSAEAPLAEDVAAPVV 817
Cdd:PRK10811 996 AVEPEVAPAQVPEATVEhnHATAPMTRAPAPEYVPEAPR 1034
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
674-931 |
8.13e-11 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 66.50 E-value: 8.13e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 674 PDVIAPIVEVTPPPSEEAVAAAPLVQDVitPVVEVTP-----PPSEEAVAAAAAPLVQDVIAPvvevTPPPSAEAPLAED 748
Cdd:PHA03247 2564 PDRSVPPPRPAPRPSEPAVTSRARRPDA--PPQSARPrapvdDRGDPRGPAPPSPLPPDTHAP----DPPPPSPSPAANE 2637
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 749 VAAPVVEVTPPPSAEaplaeDVAAPVVEVTPPPSAEAPlaedvAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPP 828
Cdd:PHA03247 2638 PDPHPPPTVPPPERP-----RDDPAPGRVSRPRRARRL-----GRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPT 2707
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 829 LAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPP-PSAEAPLAEDVAAPVVEVTPPP 907
Cdd:PHA03247 2708 PEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAgPPAPAPPAAPAAGPPRRLTRPA 2787
|
250 260 270
....*....|....*....|....*....|.
gi 1712965705 908 SVE-------APLAEDVAAPVVEVTPPPSAE 931
Cdd:PHA03247 2788 VASlsesresLPSPWDPADPPAAVLAPAAAL 2818
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
759-892 |
9.64e-11 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 65.51 E-value: 9.64e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 759 PPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlaedvAAPVVEVTPPPSAEPPLAEDVVAP-- 836
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAP-----AAPPAAAPPAPVAAPAAAAPAAAPaa 440
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1712965705 837 -VIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPlAEDVAAPVVEVTPPPSAEAPL 892
Cdd:PRK14951 441 aPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASA-APAPAAAPAAARLTPTEEGDV 496
|
|
| PTZ00436 |
PTZ00436 |
60S ribosomal protein L19-like protein; Provisional |
792-921 |
1.65e-10 |
|
60S ribosomal protein L19-like protein; Provisional
Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 63.82 E-value: 1.65e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 792 AAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPL 871
Cdd:PTZ00436 220 AAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAP 299
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1712965705 872 AEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPV 921
Cdd:PTZ00436 300 AKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAAPV 349
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
620-802 |
2.16e-10 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 65.06 E-value: 2.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 620 AEVAAPQIQDV-ITQVLEAMPPPSVEAAAPQAQDVATPIAEVTPPPSVEVEPPLVPDVIAPIVEVTPPPSEEAVAAAPLV 698
Cdd:PRK10811 863 EVQVQPVVAEVpVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEV 942
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 699 QDVITPVVEVTPPPSEeavaaaaaplvqdvIAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVT 778
Cdd:PRK10811 943 AEHAEPVVEPQDETAD--------------IEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPE 1008
|
170 180
....*....|....*....|....*..
gi 1712965705 779 PPPS---AEAPLAEdvaAPVVEVTPPP 802
Cdd:PRK10811 1009 ATVEhnhATAPMTR---APAPEYVPEA 1032
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
780-915 |
2.18e-10 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 64.35 E-value: 2.18e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 780 PPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPlaedvVAPVIEVTPPPSAEVPLAEDVAAP-- 857
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAP-----AAPPAAAPPAPVAAPAAAAPAAAPaa 440
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1712965705 858 -VVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVvevtPPPSVEAPLAE 915
Cdd:PRK14951 441 aPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPA----AARLTPTEEGD 495
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
711-914 |
2.43e-10 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 64.51 E-value: 2.43e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 711 PPSEEAVAAAAAPLVqdviapvveVTPPPSaeAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAED 790
Cdd:PRK12323 380 APVAQPAPAAAAPAA---------AAPAPA--APPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAP 448
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 791 VAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEP---PLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSA 867
Cdd:PRK12323 449 APAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPaaaPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPD 528
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1712965705 868 EAPLAEDVAAPVVEVtPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLA 914
Cdd:PRK12323 529 PATADPDDAFETLAP-APAAAPAPRAAAATEPVVAPRPPRASASGLP 574
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
776-985 |
2.76e-10 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 64.13 E-value: 2.76e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 776 EVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVA 855
Cdd:PRK12323 371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAP 450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 856 APVVEVTPPPSAEAPLAEdVAAPVVEVTPPPSAEAPLAEDVAAPVvevTPPPSVEAPLAEDVAAPVVEVTPPPSAEVKCT 935
Cdd:PRK12323 451 APAPAAAPAAAARPAAAG-PRPVAAAAAAAPARAAPAAAPAPADD---DPPPWEELPPEFASPAPAQPDAAPAGWVAESI 526
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1712965705 936 LSDGldsdnTVKAEPASETEHLAQPAASAETEAKMKKEDKTVSPPKDGTP 985
Cdd:PRK12323 527 PDPA-----TADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASAS 571
|
|
| RecA-like_FtsH |
cd19501 |
ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc ... |
340-457 |
3.53e-10 |
|
ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. It is anchored to the cytoplasmic membrane such that the amino- and carboxy-termini are exposed to the cytoplasm. It presents a membrane-bound hexameric structure that is able to unfold and degrade protein substrates. It is comprised of an N-terminal transmembrane region and the larger C-terminal cytoplasmic region, which consists of an ATPase domain and a protease domain. This RecA-Like FTsH subfamily represents the ATPase domain, and belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410909 [Multi-domain] Cd Length: 171 Bit Score: 59.94 E-value: 3.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMgRDGVTAmHKVFDWANTSRRG--LLLFVDEADAFLRKRSTE 417
Cdd:cd19501 38 KGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGA-SRVRDLFEQAKKNapCIVFIDEIDAVGRKRGAG 115
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1712965705 418 KI-SEDLR-ATLNAFLYRT-GEQSNKFMLVL-ASNQPEQFDWAI 457
Cdd:cd19501 116 LGgGHDEReQTLNQLLVEMdGFESNTGVIVIaATNRPDVLDPAL 159
|
|
| hflB |
PRK10733 |
ATP-dependent zinc metalloprotease FtsH; |
248-574 |
3.82e-10 |
|
ATP-dependent zinc metalloprotease FtsH;
Pssm-ID: 182683 [Multi-domain] Cd Length: 644 Bit Score: 63.90 E-value: 3.82e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 248 LTLLAVGVYSARNATGVAGRyiearlGKPSLVRETSRFTVGEAIKHPVKTVKRLKSKPQDALEgvvlsptLEERVRDvai 327
Cdd:PRK10733 110 LLLIGVWIFFMRQMQGGGGK------GAMSFGKSKARMLTEDQIKTTFADVAGCDEAKEEVAE-------LVEYLRE--- 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 328 ATRNTRQNNGLYRNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMGRD-GVTAMHKVFDWANTSRRgLLLFVDE 406
Cdd:PRK10733 174 PSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGvGASRVRDMFEQAKKAAP-CIIFIDE 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 407 ADAFLRKRST--EKISEDLRATLNAFLYRT-GEQSNKFMLVL-ASNQPEQFDWAI--NDRIDEIVNFALPGPDERDRLVR 480
Cdd:PRK10733 253 IDAVGRQRGAglGGGHDEREQTLNQMLVEMdGFEGNEGIIVIaATNRPDVLDPALlrPGRFDRQVVVGLPDVRGREQILK 332
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 481 LYFDKYVLEPATggrqrmklaqfdyiaKCSEIAKRTEGMSGREISKLgvAWQAAAYSSEDGVLTEAMID---ARVDDAVK 557
Cdd:PRK10733 333 VHMRRVPLAPDI---------------DAAIIARGTPGFSGADLANL--VNEAALFAARGNKRVVSMVEfekAKDKIMMG 395
|
330
....*....|....*..
gi 1712965705 558 QHRQKMDWLHAEEEAQA 574
Cdd:PRK10733 396 AERRSMVMTEAQKESTA 412
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
637-930 |
4.15e-10 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 63.72 E-value: 4.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 637 AMPPPSVEAAAPQAQDVATPIAEVTPppsvevepplvpdviAPIVEVTPPPSEEAVAAAPlvqdvITPVVEVTPPPSEEA 716
Cdd:PRK07003 379 AVPAPGARAAAAVGASAVPAVTAVTG---------------AAGAALAPKAAAAAAATRA-----EAPPAAPAPPATADR 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 717 VAAAAAPLVQDVIAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVV 796
Cdd:PRK07003 439 GDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASR 518
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 797 EVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVV-----------APVIEVTPPPSAEVPLAEDVAAPVVEV-TPP 864
Cdd:PRK07003 519 EDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLrnagmrvssdrGARAAAAAKPAAAPAAAPKPAAPRVAVqVPT 598
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 865 PSAEAPLAEDVAAPVVEVTP--------------PPSAEAPL--------AEDVAAPVVEVTPPPSVEAPLAEDVAAPVV 922
Cdd:PRK07003 599 PRARAATGDAPPNGAARAEQaaesrgapppwediPPDDYVPLsadegfggPDDGFVPVFDSGPDDVRVAPKPADAPAPPV 678
|
....*...
gi 1712965705 923 EVTPPPSA 930
Cdd:PRK07003 679 DTRPLPPA 686
|
|
| PTZ00436 |
PTZ00436 |
60S ribosomal protein L19-like protein; Provisional |
738-869 |
5.55e-10 |
|
60S ribosomal protein L19-like protein; Provisional
Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 62.27 E-value: 5.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 738 PPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVV 817
Cdd:PTZ00436 222 PAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAK 301
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1712965705 818 EVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEA 869
Cdd:PTZ00436 302 AAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAAPVGKKA 353
|
|
| PTZ00436 |
PTZ00436 |
60S ribosomal protein L19-like protein; Provisional |
730-846 |
7.58e-10 |
|
60S ribosomal protein L19-like protein; Provisional
Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 61.89 E-value: 7.58e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 730 APVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLA 809
Cdd:PTZ00436 228 APAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPA 307
|
90 100 110
....*....|....*....|....*....|....*..
gi 1712965705 810 EDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSA 846
Cdd:PTZ00436 308 KAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKA 344
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
801-931 |
1.13e-09 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 62.04 E-value: 1.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 801 PPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEdvAAPVV 880
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAP--AAAPA 443
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1712965705 881 EVTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPlAEDVAAPVVEVTPPPSAE 931
Cdd:PRK14951 444 AVALAPAPPAQAAPETVAIPVRVAPEPAVASA-APAPAAAPAAARLTPTEE 493
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
674-931 |
1.19e-09 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 62.65 E-value: 1.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 674 PDVIAPIVEVT-PPPSEEAVAAAPlvqdviTPVVEVTP-PPSEEAVAAAAAPLVQDVIAPVV------------EVTPPP 739
Cdd:PHA03247 2689 RPTVGSLTSLAdPPPPPPTPEPAP------HALVSATPlPPGPAAARQASPALPAAPAPPAVpagpatpggparPARPPT 2762
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 740 SAEAPLAedvAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAA-PVVE 818
Cdd:PHA03247 2763 TAGPPAP---APPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAqPTAP 2839
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 819 VTPPPSAEPPLA-EDVVAPVIEVTPPPSAEVPLAEDVAA---PVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAE 894
Cdd:PHA03247 2840 PPPPGPPPPSLPlGGSVAPGGDVRRRPPSRSPAAKPAAParpPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQP 2919
|
250 260 270
....*....|....*....|....*....|....*..
gi 1712965705 895 DVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPPSAE 931
Cdd:PHA03247 2920 QPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPS 2956
|
|
| PTZ00436 |
PTZ00436 |
60S ribosomal protein L19-like protein; Provisional |
788-930 |
1.36e-09 |
|
60S ribosomal protein L19-like protein; Provisional
Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 61.12 E-value: 1.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 788 AEDVAAPVVEVTPPPSAEAPLAedvAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSA 867
Cdd:PTZ00436 205 AKKAAAPSGKKSAKAAAPAKAA---AAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKA 281
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1712965705 868 EAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPPSA 930
Cdd:PTZ00436 282 AAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKA 344
|
|
| RecA-like_VPS4-like |
cd19509 |
ATPase domain of VPS4, ATAD1, K, KTNA1, Spastin, FIGL-1 and similar ATPase domains; This ... |
337-460 |
1.39e-09 |
|
ATPase domain of VPS4, ATAD1, K, KTNA1, Spastin, FIGL-1 and similar ATPase domains; This subfamily includes the ATPase domains of vacuolar protein sorting-associated protein 4 (VPS4), ATPase family AAA domain-containing protein 1 (ATAD1, also known as Thorase), Katanin p60 ATPase-containing subunit A1 (KTNA1), Spastin, and Fidgetin-Like 1 (FIGL-1). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410917 [Multi-domain] Cd Length: 163 Bit Score: 58.13 E-value: 1.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 337 GLYRNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVA--PMGrDGVTAMHKVFDWANtSRRGLLLFVDEADAFLRKR 414
Cdd:cd19509 30 GPPRGILLYGPPGTGKTLLARAVASESGSTFFSISASSLVskWVG-ESEKIVRALFALAR-ELQPSIIFIDEIDSLLSER 107
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1712965705 415 STEKiSEDLRATLNAFLYR----TGEQSNKFMLVLASNQPEQFDWAINDR 460
Cdd:cd19509 108 GSGE-HEASRRVKTEFLVQmdgvLNKPEDRVLVLGATNRPWELDEAFLRR 156
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
619-920 |
2.13e-09 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 61.64 E-value: 2.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 619 SAEVAAPQIQDVITQVLEA-----MPPPSVEAAAPqaqDVATPIAEVTPPPSVEVEPPlvpdVIAPIVEVTPPPSEEAVA 693
Cdd:PRK10263 317 TEPVAVAAAATTATQSWAApvepvTQTPPVASVDV---PPAQPTVAWQPVPGPQTGEP----VIAPAPEGYPQQSQYAQP 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 694 AAPLVQDVITPVVEVTPPPSEEAVAAAAAPLVqdviapvvevtpPPSAEAPLAEDVAAPVVEvtpPPSAEAPLAEDVAAP 773
Cdd:PRK10263 390 AVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYY------------APAPEQPAQQPYYAPAPE---QPVAGNAWQAEEQQS 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 774 VVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVaaPVVEVTPPpsAEPPL-------------AEDVVAPVIEV 840
Cdd:PRK10263 455 TFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPE--PVVEETKP--ARPPLyyfeeveekrareREQLAAWYQPI 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 841 TPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEdVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAP 920
Cdd:PRK10263 531 PEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSP-LASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRP 609
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
730-917 |
2.59e-09 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 61.40 E-value: 2.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 730 APVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlaedVAAPVVEVTPPPSAEAPlAEDVAAPVVEVTPPPSAEA--- 806
Cdd:PRK07003 367 APGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAV----TGAAGAALAPKAAAAAA-ATRAEAPPAAPAPPATADRgdd 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 807 PLAEDVAAPVVEVTP--PPSAEPPL-AEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVT 883
Cdd:PRK07003 442 AADGDAPVPAKANARasADSRCDERdAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDA 521
|
170 180 190
....*....|....*....|....*....|....
gi 1712965705 884 PPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDV 917
Cdd:PRK07003 522 PAAAAPPAPEARPPTPAAAAPAARAGGAAAALDV 555
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
340-470 |
5.31e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 55.84 E-value: 5.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 340 RNILMYGPPGTGKTLFAKKLA------------------MHSGMDYAIMTGGDVAPMGRDGVTAMHKVFDWANTSRRGlL 401
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALArelgppgggviyidgediLEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPD-V 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 402 LFVDEADAFLRKRSTEKISEDLRATLNAFLyrtgEQSNKFMLVLASNQPEQFDWA-INDRIDEIVNFALP 470
Cdd:smart00382 82 LILDEITSLLDAEQEALLLLLEELRLLLLL----KSEKNLTVILTTNDEKDLGPAlLRRRFDRRIVLLLI 147
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
682-986 |
6.36e-09 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 60.05 E-value: 6.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 682 EVTPPPSEEAVAAAPLVQDvitPVVEVTPppseeavAAAAAPLVQDV--IAPVVEVTPPPSAEAPLAEDVAAPVVEVTPP 759
Cdd:PRK10811 693 EAKALNVEEQSVQETEQEE---RVQQVQP-------RRKQRQLNQKVriEQSVAEEAVAPVVEETVAAEPVVQEVPAPRT 762
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 760 PSAEAPLaedvaaPVVEVTPPPSAEAPLAEDVAApvvEVTP-------------------------PPSAEAPLAEDVAA 814
Cdd:PRK10811 763 ELVKVPL------PVVAQTAPEQDEENNAENRDN---NGMPrrsrrsprhlrvsgqrrrryrderyPTQSPMPLTVACAS 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 815 PVVE---------VTPPpsAEPPLAEDVVAPVIEVTPPpsaevpLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPP 885
Cdd:PRK10811 834 PEMAsgkvwirypVVRP--QDVQVEEQREAEEVQVQPV------VAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQ 905
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 886 PSAEAPLA----EDVAAPVVEVTPP-PSVEAPLAEDVAAPVVEVTPPPSAEVKCTlsdgldSDNTVKAEPASETEHLAQP 960
Cdd:PRK10811 906 PEEVVVVEtthpEVIAAPVTEQPQViTESDVAVAQEVAEHAEPVVEPQDETADIE------EAAETAEVVVAEPEVVAQP 979
|
330 340
....*....|....*....|....*.
gi 1712965705 961 AASAETEAKMKKEDKTVSPPKDGTPV 986
Cdd:PRK10811 980 AAPVVAEVAAEVETVTAVEPEVAPAQ 1005
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
730-853 |
6.69e-09 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 59.73 E-value: 6.69e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 730 APVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEdvAAPVVEVTPPPSAEAPLA 809
Cdd:PRK14951 379 KTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAP--AAAPAAVALAPAPPAQAA 456
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1712965705 810 EDVAAPVVEVTPPPSAepplaedVVAPVIEVTPPPSAEVPLAED 853
Cdd:PRK14951 457 PETVAIPVRVAPEPAV-------ASAAPAPAAAPAAARLTPTEE 493
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
729-898 |
1.49e-08 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 58.72 E-value: 1.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 729 IAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlAEDVAAPVVEvtPPPSAEAPLAEDVAAPVVEVTPPPSAEAPL 808
Cdd:PRK07994 364 PLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVP-PPPASAPQQA--PAVPLPETTSQLLAARQQLQRAQGATKAKK 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 809 AEDVAAPVVEvtPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPP--PSAEAPLAEDVAAPvvEVTPPP 886
Cdd:PRK07994 441 SEPAAASRAR--PVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVatPKALKKALEHEKTP--ELAAKL 516
|
170
....*....|..
gi 1712965705 887 SAEAPLAEDVAA 898
Cdd:PRK07994 517 AAEAIERDPWAA 528
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
771-931 |
1.61e-08 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 58.34 E-value: 1.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 771 AAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlAEDVAAPVVEvtPPPSAEPPLAEDVVAPVIEVTPPPSAEVPL 850
Cdd:PRK07994 364 PLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVP-PPPASAPQQA--PAVPLPETTSQLLAARQQLQRAQGATKAKK 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 851 AEDVAAPVVEvtPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAED---VAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPP 927
Cdd:PRK07994 441 SEPAAASRAR--PVNSALERLASVRPAPSALEKAPAKKEAYRWKAtnpVEVKKEPVATPKALKKALEHEKTPELAAKLAA 518
|
....
gi 1712965705 928 PSAE 931
Cdd:PRK07994 519 EAIE 522
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
600-912 |
1.63e-08 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 59.18 E-value: 1.63e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 600 PQAKDVVAPVVEVTPPPPPSAEVAAPQiqdviTQVLEAMPPPSVEAAAPQAQDvATPIAEVTPPPSVEVEPPLVPDVIAp 679
Cdd:PHA03247 2686 RAARPTVGSLTSLADPPPPPPTPEPAP-----HALVSATPLPPGPAAARQASP-ALPAAPAPPAVPAGPATPGGPARPA- 2758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 680 ivevTPPPSEEAVAAAPLVQDVITPVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSAEAPLAEDVAAPVvevtPP 759
Cdd:PHA03247 2759 ----RPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPL----PP 2830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 760 PSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVA--APVVEVTPPPSAEA-PLAEDVAAPVVEVTPPPSAEPPLAEDvvAP 836
Cdd:PHA03247 2831 PTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRrrPPSRSPAAKPAAPArPPVRRLARPAVSRSTESFALPPDQPE--RP 2908
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 837 VIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDV-AAPVVE---VTPPPSAEAPLAEDVAAPVVEVTPP-PSVEA 911
Cdd:PHA03247 2909 PQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTdPAGAGEpsgAVPQPWLGALVPGRVAVPRFRVPQPaPSREA 2988
|
.
gi 1712965705 912 P 912
Cdd:PHA03247 2989 P 2989
|
|
| RecA-like_NVL_r2-like |
cd19530 |
second of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL ... |
342-457 |
1.84e-08 |
|
second of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL exists in two forms with N-terminal extensions of different lengths in mammalian cells. NVL has two alternatively spliced isoforms, a short form, NVL1, and a long form, NVL2. NVL2, the major species, is mainly present in the nucleolus, whereas NVL1 is nucleoplasmic. Each has an N-terminal domain, followed by two tandem ATPase domains; this subfamily includes the first of the two ATPase domains. NVL2 is involved in the biogenesis of the 60S ribosome subunit by associating specifically with ribosome protein L5 and modulating the function of DOB1. NVL2 is also required for telomerase assembly and the regulation of telomerase activity, and is involved in pre-rRNA processing. The role of NVL1 is unclear. This RecA-like_NVL_r1-like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410938 [Multi-domain] Cd Length: 161 Bit Score: 54.80 E-value: 1.84e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 342 ILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMG-RDGVTAMHKVFDWANTSRRGLLLFvDEADAFLRKRSTEKIS 420
Cdd:cd19530 33 VLLYGPPGCGKTLLAKAVANESGANFISVKGPELLNKYvGESERAVRQVFQRARASAPCVIFF-DEVDALVPKRGDGGSW 111
|
90 100 110
....*....|....*....|....*....|....*....
gi 1712965705 421 EDLRaTLNAFLYRT--GEQSNKFMLVLASNQPEQFDWAI 457
Cdd:cd19530 112 ASER-VVNQLLTEMdgLEERSNVFVIAATNRPDIIDPAM 149
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
750-919 |
2.38e-08 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 57.95 E-value: 2.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 750 AAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlAEDVAAPVVEvtPPPSAEAPLAEDVAAPVVEVTPPPSAEPPL 829
Cdd:PRK07994 364 PLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVP-PPPASAPQQA--PAVPLPETTSQLLAARQQLQRAQGATKAKK 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 830 AEDVVAPviEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPP--PSAEAPLAEDVAAPvvEVTPPP 907
Cdd:PRK07994 441 SEPAAAS--RARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVatPKALKKALEHEKTP--ELAAKL 516
|
170
....*....|..
gi 1712965705 908 SVEAPLAEDVAA 919
Cdd:PRK07994 517 AAEAIERDPWAA 528
|
|
| PRK03992 |
PRK03992 |
proteasome-activating nucleotidase; Provisional |
342-525 |
2.62e-08 |
|
proteasome-activating nucleotidase; Provisional
Pssm-ID: 179699 [Multi-domain] Cd Length: 389 Bit Score: 57.15 E-value: 2.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 342 ILMYGPPGTGKTLFAKKLAMHSGMDYAIMTG--------GDVAPMGRDgvtamhkVFDWANtSRRGLLLFVDEADAFLRK 413
Cdd:PRK03992 168 VLLYGPPGTGKTLLAKAVAHETNATFIRVVGselvqkfiGEGARLVRE-------LFELAR-EKAPSIIFIDEIDAIAAK 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 414 RSTEKISED---------LRATLNAFlyrtgEQSNKFMLVLASNQPEQFDWAI-----NDRIDEIvnfalPGPDERDRLV 479
Cdd:PRK03992 240 RTDSGTSGDrevqrtlmqLLAEMDGF-----DPRGNVKIIAATNRIDILDPAIlrpgrFDRIIEV-----PLPDEEGRLE 309
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1712965705 480 rlyfdkyVLEPATggrQRMKLAQ-FDYiakcSEIAKRTEGMSGREIS 525
Cdd:PRK03992 310 -------ILKIHT---RKMNLADdVDL----EELAELTEGASGADLK 342
|
|
| RecA-like_CDC48_r2-like |
cd19511 |
second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase ... |
340-457 |
2.76e-08 |
|
second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase domains; This subfamily includes the second of two ATPase domains of the molecular chaperone CDC48 in yeast and p97 or VCP in metazoans, Peroxisomal biogenesis factor 1 (PEX1) and -6 (PEX6), Valosin-containing protein-like ATPase (VAT), and nuclear VCP-like protein (NVL). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410919 [Multi-domain] Cd Length: 159 Bit Score: 54.21 E-value: 2.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPM--GrDGVTAMHKVFDWANTSRRGlLLFVDEADAFLRKRSTE 417
Cdd:cd19511 28 KGVLLYGPPGCGKTLLAKALASEAGLNFISVKGPELFSKyvG-ESERAVREIFQKARQAAPC-IIFFDEIDSLAPRRGQS 105
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1712965705 418 KISEDLRATLNAFLYRTG--EQSNKFMLVLASNQPEQFDWAI 457
Cdd:cd19511 106 DSSGVTDRVVSQLLTELDgiESLKGVVVIAATNRPDMIDPAL 147
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
737-920 |
3.02e-08 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 57.94 E-value: 3.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 737 PPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPsaeAPLAEDVAAPV 816
Cdd:PRK07003 360 PAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEA---PPAAPAPPATA 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 817 VEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEvplAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDV 896
Cdd:PRK07003 437 DRGDDAADGDAPVPAKANARASADSRCDERD---AQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAP 513
|
170 180
....*....|....*....|....
gi 1712965705 897 AAPVVEVTPPPSVEAPLAEDVAAP 920
Cdd:PRK07003 514 AAASREDAPAAAAPPAPEARPPTP 537
|
|
| RecA-like_KTNA1 |
cd19522 |
Katanin p60 ATPase-containing subunit A1; Katanin p60 ATPase-containing subunit A1 (KTNA1) is ... |
339-463 |
3.24e-08 |
|
Katanin p60 ATPase-containing subunit A1; Katanin p60 ATPase-containing subunit A1 (KTNA1) is the catalytic subunit of the Katanin complex which is severs microtubules in an ATP-dependent manner, and is implicated in multiple aspects of microtubule dynamics. In addition to the p60 catalytic ATPase subunit, Katanin contains an accessory subunit (p80 or p80-like). The microtubule-severing activity of the ATPase is essential for female meiotic spindle assembly, and male gamete production; and the katanin complex severing microtubules is under tight regulation during the transition from the meiotic to mitotic stage to allow proper embryogenesis. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410930 [Multi-domain] Cd Length: 170 Bit Score: 54.22 E-value: 3.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 339 YRNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMGRDGVTAMHK-VFDWANTSRRGlLLFVDEADAFLRKRSTE 417
Cdd:cd19522 33 WKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRlLFEMARFYAPT-TIFIDEIDSICSRRGTS 111
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1712965705 418 KISEDLRATLNAFLYR--------TGEQSNKFMLVL-ASNQPEQFDWAINDRIDE 463
Cdd:cd19522 112 EEHEASRRVKSELLVQmdgvggasENDDPSKMVMVLaATNFPWDIDEALRRRLEK 166
|
|
| PLN03209 |
PLN03209 |
translocon at the inner envelope of chloroplast subunit 62; Provisional |
737-985 |
3.74e-08 |
|
translocon at the inner envelope of chloroplast subunit 62; Provisional
Pssm-ID: 178748 [Multi-domain] Cd Length: 576 Bit Score: 57.24 E-value: 3.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 737 PPPsaEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDV--AA 814
Cdd:PLN03209 328 VPP--KESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLKPPTSPIPTPPSSSPASSKSVdaVA 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 815 PVVEVTPPPSAEPP--LAEDVVAPVIEVTPPPSAEVPLAEDVAAPvveVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPL 892
Cdd:PLN03209 406 KPAEPDVVPSPGSAsnVPEVEPAQVEAKKTRPLSPYARYEDLKPP---TSPSPTAPTGVSPSVSSTSSVPAVPDTAPATA 482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 893 AEDVAAPVVEVTPPPSVEA-------PLAEDVAAPVVEVTPPPSAEVKCTLSDGLDSdntvkaePASETEHLAQPAASAE 965
Cdd:PLN03209 483 ATDAAAPPPANMRPLSPYAvyddlkpPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPT-------ALADEQHHAQPKPRPL 555
|
250 260
....*....|....*....|
gi 1712965705 966 TEAKMKKEDKtvsPPKDGTP 985
Cdd:PLN03209 556 SPYTMYEDLK---PPTSPTP 572
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
50-271 |
3.83e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.64 E-value: 3.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 50 ERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERRKTLNEETKQHQARAQYQDK 129
Cdd:COG1196 351 EELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEAL 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 130 LARQRYEDQLRQQQI-LNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVERENADIIREQIRLK 208
Cdd:COG1196 431 AELEEEEEEEEEALEeAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGV 510
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1712965705 209 AAEHRQTVLESIKTAGAVfgegfrafVSDWDKVTATVAGLTLLAVGVYSARNATGVAGRYIEA 271
Cdd:COG1196 511 KAALLLAGLRGLAGAVAV--------LIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEY 565
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
673-872 |
4.07e-08 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 57.19 E-value: 4.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 673 VPDVIAPIVEVTPPPSEEAVAAAPlvqdvitPVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSAEAPLAEDVAAP 752
Cdd:PRK12323 386 APAAAAPAAAAPAPAAPPAAPAAA-------PAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAP 458
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 753 VVEVTPP-PSAEAPLAEDVAAPVVEVTPPPSAEAPLA----EDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAE- 826
Cdd:PRK12323 459 AAAARPAaAGPRPVAAAAAAAPARAAPAAAPAPADDDpppwEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAf 538
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1712965705 827 PPLAEdvvapvievtPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLA 872
Cdd:PRK12323 539 ETLAP----------APAAAPAPRAAAATEPVVAPRPPRASASGLP 574
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
50-219 |
4.86e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.25 E-value: 4.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 50 ERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERRKTLNEETKQHQARAQYQDK 129
Cdd:COG1196 253 AELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEEL 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 130 LARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVERENaDIIREQIRLKA 209
Cdd:COG1196 333 EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAA-QLEELEEAEEA 411
|
170
....*....|
gi 1712965705 210 AEHRQTVLES 219
Cdd:COG1196 412 LLERLERLEE 421
|
|
| RecA-like_PAN_like |
cd19502 |
proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily ... |
340-467 |
4.91e-08 |
|
proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily contains ATPase subunits of the eukaryotic 26S proteasome, and of the archaeal proteasome which carry out ATP-dependent degradation of substrates of the ubiquitin-proteasome pathway. The eukaryotic 26S proteasome consists of a proteolytic 20S core particle (CP), and a 19S regulatory particle (RP) which provides the ATP-dependence and the specificity for ubiquitinated proteins. In the archaea the RP is a homohexameric complex of proteasome-activating nucleotidase (PAN). This subfamily also includes various eukaryotic 26S subunits including, proteasome 26S subunit, ATPase 2 (PSMC2, also known as S7 and MSS1) which is a member of the 19S RP and has a chaperone like activity; and proteasome 20S subunit alpha 6 (PSMA6, also known as IOTA, p27K, and PROS27) which is a member of the 20S CP. This RecA-like_PAN subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410910 [Multi-domain] Cd Length: 171 Bit Score: 53.50 E-value: 4.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGD-VAPMGRDGVTAMHKVFDWANTsRRGLLLFVDEADAFLRKRSTEK 418
Cdd:cd19502 38 KGVLLYGPPGTGKTLLAKAVANHTDATFIRVVGSElVQKYIGEGARLVRELFEMARE-KAPSIIFIDEIDAIGAKRFDSG 116
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 419 ISED---------LRATLNAFlyrtgEQSNKFMLVLASNQPEQFDWAI--NDRIDEIVNF 467
Cdd:cd19502 117 TGGDrevqrtmleLLNQLDGF-----DPRGNIKVIMATNRPDILDPALlrPGRFDRKIEF 171
|
|
| RecA-like_VPS4 |
cd19521 |
ATPase domain of vacuolar protein sorting-associated protein 4; Vacuolar protein ... |
339-463 |
6.01e-08 |
|
ATPase domain of vacuolar protein sorting-associated protein 4; Vacuolar protein sorting-associated protein 4 (Vps4) is believed to be involved in intracellular protein transport out of a prevacuolar endosomal compartment. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410929 [Multi-domain] Cd Length: 170 Bit Score: 53.33 E-value: 6.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 339 YRNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAP--MGrDGVTAMHKVFDWANTSRRGlLLFVDEADAFLRKRSt 416
Cdd:cd19521 40 WSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSkwMG-ESEKLVKQLFAMARENKPS-IIFIDEVDSLCGTRG- 116
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1712965705 417 EKISEDLRATLNAFLYR---TGEQSNKFMLVLASNQPEQFDWAINDRIDE 463
Cdd:cd19521 117 EGESEASRRIKTELLVQmngVGNDSQGVLVLGATNIPWQLDSAIRRRFEK 166
|
|
| CDC48 |
TIGR01243 |
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two ... |
340-527 |
6.24e-08 |
|
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Pssm-ID: 273521 [Multi-domain] Cd Length: 733 Bit Score: 56.84 E-value: 6.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDV-APMGRDGVTAMHKVFDWANTSRRGlLLFVDEADAFLRKRSTEK 418
Cdd:TIGR01243 488 KGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEIlSKWVGESEKAIREIFRKARQAAPA-IIFFDEIDAIAPARGARF 566
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 419 ISEDLRATLNAFLYRT-GEQSNKFMLVL-ASNQPEQFDWAI--NDRIDEIVnfALPGPDERDRlvrlyFDKYVLEPatgg 494
Cdd:TIGR01243 567 DTSVTDRIVNQLLTEMdGIQELSNVVVIaATNRPDILDPALlrPGRFDRLI--LVPPPDEEAR-----KEIFKIHT---- 635
|
170 180 190
....*....|....*....|....*....|...
gi 1712965705 495 rQRMKLAQfdyIAKCSEIAKRTEGMSGREISKL 527
Cdd:TIGR01243 636 -RSMPLAE---DVDLEELAEMTEGYTGADIEAV 664
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
50-214 |
6.60e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.87 E-value: 6.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 50 ERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEH-QSKIKEYEAAVEQLKG--DQIRIQGEERRKTLNEETKQhQARAQY 126
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELEELEAELEElEAELAELEAELEELRLelEELELELEEAQAEEYELLAE-LARLEQ 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 127 QDKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNEL-LRIEAESKARARVERENADIIREQI 205
Cdd:COG1196 303 DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAeAELAEAEEALLEAEAELAEAEEELE 382
|
....*....
gi 1712965705 206 RLKAAEHRQ 214
Cdd:COG1196 383 ELAEELLEA 391
|
|
| PRK14949 |
PRK14949 |
DNA polymerase III subunits gamma and tau; Provisional |
620-986 |
7.92e-08 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 56.66 E-value: 7.92e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 620 AEVAAPQIQDVITQVLEAMPPPSVEAAAPQAQ---------DVATPIAEVTPPPSVEVEPPLVPDVIAPIVEVTPPPSEE 690
Cdd:PRK14949 372 AEISLPEGQTPSALAAAVQAPHANEPQFVNAApaekktaltEQTTAQQQVQAANAEAVAEADASAEPADTVEQALDDESE 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 691 AVAAAPLVQDVI-------------------TPVVEVTPPPSEEAVAAAAA--PLVQDVIAPVVEVTPPPSAEAPLAEDV 749
Cdd:PRK14949 452 LLAALNAEQAVIlsqaqsqgfeasssldadnSAVPEQIDSTAEQSVVNPSVtdTQVDDTSASNNSAADNTVDDNYSAEDT 531
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 750 AApvvevtpPPSAEAPLAEDVAAPVVEVTPPPSAE--APLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEP 827
Cdd:PRK14949 532 LE-------SNGLDEGDYAQDSAPLDAYQDDYVAFssESYNALSDDEQHSANVQSAQSAAEAQPSSQSLSPISAVTTAAA 604
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 828 PLAED-----VVA-------------PVIEVTPPPSAEV-PLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPS- 887
Cdd:PRK14949 605 SLADDdildaVLAardsllsdldalsPKEGDGKKSSADRkPKTPPSRAPPASLSKPASSPDASQTSASFDLDPDFELATh 684
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 888 ---AEAPLAEDVA-APVVEVTP---PPSVEAPlaEDVAAPVVEVTPPPSAEVKCTLSDGLDSDNTVkaEPASETEHLAQP 960
Cdd:PRK14949 685 qsvPEAALASGSApAPPPVPDPydrPPWEEAP--EVASANDGPNNAAEGNLSESVEDASNSELQAV--EQQATHQPQVQA 760
|
410 420
....*....|....*....|....*..
gi 1712965705 961 AASAET-EAKMKKEDKTVSPPKDGTPV 986
Cdd:PRK14949 761 EAQSPAsTTALTQTSSEVQDTELNLVL 787
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
578-928 |
8.13e-08 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 56.87 E-value: 8.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 578 TPPKPEGTSGGKMGFVLPLSEAPQAKDVVAPVVEVTPPPPPSAEVAAPqiqdvitqvlEAMPPPSVEAAAPQAqdvATPI 657
Cdd:PHA03247 2719 TPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGP----------PAPAPPAAPAAGPPR---RLTR 2785
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 658 AEVTPPPSVEVEPPLVPDVIAPIVEVTPPPSEEAVAAAPLVQDVITPVVEVTPPPSEEAVAAAAAPLVQDVI--APVVEV 735
Cdd:PHA03247 2786 PAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVApgGDVRRR 2865
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 736 TPPPSAEA-------PLAEDVAAPVVEVTPPPSAEAPLAEdvAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPL 808
Cdd:PHA03247 2866 PPSRSPAAkpaaparPPVRRLARPAVSRSTESFALPPDQP--ERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPL 2943
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 809 AEDvAAPVVEVTPPPSAEPPLAEDVVAPVIEV----TPPPSAEVPLAEDVAAPV------------------VEVTPPPS 866
Cdd:PHA03247 2944 APT-TDPAGAGEPSGAVPQPWLGALVPGRVAVprfrVPQPAPSREAPASSTPPLtghslsrvsswasslalhEETDPPPV 3022
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1712965705 867 A-------EAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPP 928
Cdd:PHA03247 3023 SlkqtlwpPDDTEDSDADSLFDSDSERSDLEALDPLPPEPHDPFAHEPDPATPEAGARESPSSQFGPPP 3091
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
49-223 |
1.44e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.71 E-value: 1.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 49 LERAAQAAK-------DLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERRKTLNEETKQ-H 120
Cdd:COG1196 205 LERQAEKAEryrelkeELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELElE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 121 QARAQYQDKLAR--------QRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARAR 192
Cdd:COG1196 285 EAQAEEYELLAElarleqdiARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE 364
|
170 180 190
....*....|....*....|....*....|.
gi 1712965705 193 VERENADIIREQIRLKAAEHRQTVLESIKTA 223
Cdd:COG1196 365 EALLEAEAELAEAEEELEELAEELLEALRAA 395
|
|
| RecA-like_ATAD1 |
cd19520 |
ATPase domain of ATPase family AAA domain-containing protein 1 and similar ATPase domains; ... |
340-461 |
1.76e-07 |
|
ATPase domain of ATPase family AAA domain-containing protein 1 and similar ATPase domains; ATPase family AAA domain-containing protein 1 (ATAD1, also known as Thorase) is an ATPase that plays a critical role in regulating the surface expression of alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptors, thereby regulating synaptic plasticity, learning and memory. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410928 [Multi-domain] Cd Length: 166 Bit Score: 52.04 E-value: 1.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 340 RNILMYGPPGTGKTLFAKKLAMHSGMDY-----AIMTG---GDvapmGRDGVTAmhkVFDWANTSRRGlLLFVDEADAFL 411
Cdd:cd19520 36 KGVLLYGPPGCGKTMLAKATAKEAGARFinlqvSSLTDkwyGE----SQKLVAA---VFSLASKLQPS-IIFIDEIDSFL 107
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1712965705 412 RKRStekiSEDLRATL---NAFL-----YRTGEQSnKFMLVLASNQPEQFDWAINDRI 461
Cdd:cd19520 108 RQRS----STDHEATAmmkAEFMslwdgLSTDGNC-RVIVMGATNRPQDLDEAILRRM 160
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
50-221 |
1.94e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.53 E-value: 1.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 50 ERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLK--GDQIRIQGEERRKTLNEETKQHQARAQYQ 127
Cdd:PTZ00121 1441 EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKkkAEEAKKKADEAKKAAEAKKKADEAKKAEE 1520
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 128 DKLARQ-------RYEDQLRQ-QQILNEENLRKQEEsVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVERENAD 199
Cdd:PTZ00121 1521 AKKADEakkaeeaKKADEAKKaEEKKKADELKKAEE-LKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMK 1599
|
170 180
....*....|....*....|..
gi 1712965705 200 IIREQIRLKAAEHRQTVLESIK 221
Cdd:PTZ00121 1600 LYEEEKKMKAEEAKKAEEAKIK 1621
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
49-218 |
2.21e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.94 E-value: 2.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 49 LERAAQAAKDLD--KSRHAKEALDLARMQEQSTQLE-----HQSKIKEYEAAVEQLKGDQIRIQgEERRKTLNEETKQHQ 121
Cdd:COG1196 294 LAELARLEQDIArlEERRRELEERLEELEEELAELEeeleeLEEELEELEEELEEAEEELEEAE-AELAEAEEALLEAEA 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 122 ARAQYQDKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVERENADII 201
Cdd:COG1196 373 ELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA 452
|
170
....*....|....*..
gi 1712965705 202 REQIRLKAAEHRQTVLE 218
Cdd:COG1196 453 ELEEEEEALLELLAELL 469
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
703-932 |
2.37e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 54.99 E-value: 2.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 703 TPVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSAEAPlaedvAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPS 782
Cdd:PRK07764 583 QVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAP-----AAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHV 657
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 783 AEAPLAEDV-AAPVVEVTPPPSAEAPLAEDVA--APVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVV 859
Cdd:PRK07764 658 AVPDASDGGdGWPAKAGGAAPAAPPPAPAPAApaAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADD 737
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1712965705 860 EVTPPPsaEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVvevtPPPSVEAPLAEDVAAPVVEVTPPPSAEV 932
Cdd:PRK07764 738 PVPLPP--EPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPP----SPPSEEEEMAEDDAPSMDDEDRRDAEEV 804
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
599-890 |
2.60e-07 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 54.86 E-value: 2.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 599 APQAKDVVAPVVEVTPPPPPSAEVAAPQIQDVITQVLEAMPPPSVEAAAPQAQDVATPIAEVTPPPSVEVEPPLVPDVIA 678
Cdd:PRK07003 384 GARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRC 463
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 679 PIVEVTPPPSEEAVAAAPlvqDVITPVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEVT---PPPSAEAPLAEDVAAPVVE 755
Cdd:PRK07003 464 DERDAQPPADSGSASAPA---SDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASRedaPAAAAPPAPEARPPTPAAA 540
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 756 VTPPPSAEAPLAEDV-----------AAPVVEVTPPPSAEAPLAEDVAAPVVEVtPPPSAEAPLAEDVAAPVVEVTPPPS 824
Cdd:PRK07003 541 APAARAGGAAAALDVlrnagmrvssdRGARAAAAAKPAAAPAAAPKPAAPRVAV-QVPTPRARAATGDAPPNGAARAEQA 619
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1712965705 825 AE----PPLAEDVvapvievtpPPSAEVPL--------AEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEA 890
Cdd:PRK07003 620 AEsrgaPPPWEDI---------PPDDYVPLsadegfggPDDGFVPVFDSGPDDVRVAPKPADAPAPPVDTRPLPPAIP 688
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
61-213 |
2.79e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 54.74 E-value: 2.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 61 KSRHAKEALDLARMQEQSTQlEHQSKIKEYEAAVEQLKGDQ-------IRIQGEERRKTLnEETKQHQARAQYQDKLARQ 133
Cdd:pfam17380 390 KNERVRQELEAARKVKILEE-ERQRKIQQQKVEMEQIRAEQeearqreVRRLEEERAREM-ERVRLEEQERQQQVERLRQ 467
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 134 RYEDQLRQQQILNEENLRKQEESVQK----------------QEAMRKATIEHEMELRHK---NELLRIEAESKARARVE 194
Cdd:pfam17380 468 QEEERKRKKLELEKEKRDRKRAEEQRrkilekeleerkqamiEEERKRKLLEKEMEERQKaiyEEERRREAEEERRKQQE 547
|
170
....*....|....*....
gi 1712965705 195 RENADIIREQIRlKAAEHR 213
Cdd:pfam17380 548 MEERRRIQEQMR-KATEER 565
|
|
| ftsH |
CHL00176 |
cell division protein; Validated |
342-527 |
2.98e-07 |
|
cell division protein; Validated
Pssm-ID: 214386 [Multi-domain] Cd Length: 638 Bit Score: 54.29 E-value: 2.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 342 ILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMgRDGVTA--MHKVFDWANtSRRGLLLFVDEADAFLRKRSTE-K 418
Cdd:CHL00176 219 VLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM-FVGVGAarVRDLFKKAK-ENSPCIVFIDEIDAVGRQRGAGiG 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 419 ISEDLR-ATLNAFL-YRTGEQSNKFMLVL-ASNQPEQFDWAI--NDRIDEIVNFALPGPDERDRLVRLYFDKYVLEPATG 493
Cdd:CHL00176 297 GGNDEReQTLNQLLtEMDGFKGNKGVIVIaATNRVDILDAALlrPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVS 376
|
170 180 190
....*....|....*....|....*....|....
gi 1712965705 494 GRQrmklaqfdyiakcseIAKRTEGMSGREISKL 527
Cdd:CHL00176 377 LEL---------------IARRTPGFSGADLANL 395
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
710-831 |
4.69e-07 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 53.56 E-value: 4.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 710 PPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAE 789
Cdd:PRK14951 373 AAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPP 452
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1712965705 790 DVAAPVVeVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAE 831
Cdd:PRK14951 453 AQAAPET-VAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493
|
|
| PTZ00436 |
PTZ00436 |
60S ribosomal protein L19-like protein; Provisional |
685-822 |
4.70e-07 |
|
60S ribosomal protein L19-like protein; Provisional
Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 53.03 E-value: 4.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 685 PPPSEEAVAAAPLVQDVITPVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEA 764
Cdd:PTZ00436 211 PSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAA 290
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1712965705 765 PLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPP 822
Cdd:PTZ00436 291 PPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAAP 348
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
52-214 |
4.70e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 4.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 52 AAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQskIKEYEAAVEQLKGDQIRIQGE--ERRKTLNEETKQHQARAQYQDK 129
Cdd:COG1196 285 EAQAEEYELLAELARLEQDIARLEERRRELEER--LEELEEELAELEEELEELEEEleELEEELEEAEEELEEAEAELAE 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 130 LARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVERENADIIREQIRLKA 209
Cdd:COG1196 363 AEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEE 442
|
....*
gi 1712965705 210 AEHRQ 214
Cdd:COG1196 443 ALEEA 447
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
706-876 |
5.09e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 53.72 E-value: 5.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 706 VEVTPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSAEAPlAEDVAAPVVEvtPPPSAEAPLAEDVAAPVVEVTPPPSAEA 785
Cdd:PRK07994 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVP-PPPASAPQQA--PAVPLPETTSQLLAARQQLQRAQGATKA 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 786 PLAEDVAAPVVEvtPPPSAEAPLAEDVAAPVVEVTPPPSAEP----PLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEV 861
Cdd:PRK07994 439 KKSEPAAASRAR--PVNSALERLASVRPAPSALEKAPAKKEAyrwkATNPVEVKKEPVATPKALKKALEHEKTPELAAKL 516
|
170
....*....|....*
gi 1712965705 862 TPPPSAEAPLAEDVA 876
Cdd:PRK07994 517 AAEAIERDPWAALVS 531
|
|
| PTZ00454 |
PTZ00454 |
26S protease regulatory subunit 6B-like protein; Provisional |
340-483 |
5.10e-07 |
|
26S protease regulatory subunit 6B-like protein; Provisional
Pssm-ID: 240423 [Multi-domain] Cd Length: 398 Bit Score: 53.23 E-value: 5.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGD-VAPMGRDGVTAMHKVFDWANTSRRGlLLFVDEADAFLRK----- 413
Cdd:PTZ00454 180 RGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEfVQKYLGEGPRMVRDVFRLARENAPS-IIFIDEVDSIATKrfdaq 258
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965705 414 ----RSTEKISEDLRATLNAFlyrtgEQSNKFMLVLASNQPEQFDWAI--NDRIDEIVNFalPGPDERDRlvRLYF 483
Cdd:PTZ00454 259 tgadREVQRILLELLNQMDGF-----DQTTNVKVIMATNRADTLDPALlrPGRLDRKIEF--PLPDRRQK--RLIF 325
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
51-214 |
6.37e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.61 E-value: 6.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 51 RAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVE--------QLKGDQIRIQGEERRKTlnEETKQHQA 122
Cdd:PTZ00121 1351 EAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEakkkaeedKKKADELKKAAAAKKKA--DEAKKKAE 1428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 123 RAQYQDKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATiehemELRHKNELLRIEAESKARARVERENADIIR 202
Cdd:PTZ00121 1429 EKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKAD-----EAKKKAEEAKKADEAKKKAEEAKKKADEAK 1503
|
170
....*....|....
gi 1712965705 203 --EQIRLKAAEHRQ 214
Cdd:PTZ00121 1504 kaAEAKKKADEAKK 1517
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
751-927 |
7.01e-07 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 53.55 E-value: 7.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 751 APVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAeDVAAPVVEVTPPPSAEAPlaEDVAAPVVEVTPPPSAEPPLA 830
Cdd:PRK10263 314 APITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDV-PPAQPTVAWQPVPGPQTG--EPVIAPAPEGYPQQSQYAQPA 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 831 EDVVAPVIEVTPP------PSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSA----------EAPLAE 894
Cdd:PRK10263 391 VQYNEPLQQPVQPqqpyyaPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQStfapqstyqtEQTYQQ 470
|
170 180 190
....*....|....*....|....*....|...
gi 1712965705 895 DVAAPVVEVTPPPSVEAPLAEDVaaPVVEVTPP 927
Cdd:PRK10263 471 PAAQEPLYQQPQPVEQQPVVEPE--PVVEETKP 501
|
|
| RecA-like_VCP_r2 |
cd19529 |
second of two ATPase domains of Valosin-containing protein-like ATPase (VAT) and similar ... |
340-457 |
9.91e-07 |
|
second of two ATPase domains of Valosin-containing protein-like ATPase (VAT) and similar ATPase domains; The Valosin-containing protein-like ATPase of Thermoplasma acidophilum (VAT), is an archaeal homolog of the ubiquitous Cdc48/p97. It is a protein unfoldase that functions in concert with the 20S proteasome by unfolding proteasome substrates and passing them on for degradation. VAT forms a homohexamer, each monomer contains two tandem ATPase domains, referred to as D1 and D2, and an N-terminal domain. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410937 [Multi-domain] Cd Length: 159 Bit Score: 49.42 E-value: 9.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDV-APMGRDGVTAMHKVFDWANTSRRgLLLFVDEADAFLRKRS--- 415
Cdd:cd19529 28 KGILLYGPPGTGKTLLAKAVATESNANFISVKGPELlSKWVGESEKAIREIFRKARQVAP-CVIFFDEIDSIAPRRGttg 106
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1712965705 416 ----TEKISEDLRATLNAFlyrtgEQSNKFMLVLASNQPEQFDWAI 457
Cdd:cd19529 107 dsgvTERVVNQLLTELDGL-----EEMNGVVVIAATNRPDIIDPAL 147
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
678-984 |
1.10e-06 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 52.61 E-value: 1.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 678 APIVEVTPPPSEEAVAAAPlvqDVITPVVEVTPPPSEEAVAAAAAPLVQ--DVIAPV--------VEVTPPPS----AEA 743
Cdd:pfam05109 424 APESTTTSPTLNTTGFAAP---NTTTGLPSSTHVPTNLTAPASTGPTVStaDVTSPTpagttsgaSPVTPSPSprdnGTE 500
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 744 PLAEDVAAPVVEVTPP-PSAEAPlaedvaAPVVeVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlaedvaAPVVeVTPP 822
Cdd:pfam05109 501 SKAPDMTSPTSAVTTPtPNATSP------TPAV-TTPTPNATSPTLGKTSPTSAVTTPTPNATSP------TPAV-TTPT 566
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 823 PSAepplaedvVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPP--SAEAPLAEDVAAPVVeVTPPPSAEAPLAEDVAAPV 900
Cdd:pfam05109 567 PNA--------TIPTLGKTSPTSAVTTPTPNATSPTVGETSPQanTTNHTLGGTSSTPVV-TSPPKNATSAVTTGQHNIT 637
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 901 VEVTP-----PPSVEAPLAEDVA------APVVEVTPPPSAEVKCTLSDGLDSDNTVK-AEPASETEHLAQPAASAETEA 968
Cdd:pfam05109 638 SSSTSsmslrPSSISETLSPSTSdnstshMPLLTSAHPTGGENITQVTPASTSTHHVStSSPAPRPGTTSQASGPGNSST 717
|
330
....*....|....*....
gi 1712965705 969 KMKKEDKTV---SPPKDGT 984
Cdd:pfam05109 718 STKPGEVNVtkgTPPKNAT 736
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
788-930 |
1.17e-06 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 52.56 E-value: 1.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 788 AEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPlaedvVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSA 867
Cdd:PRK07994 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPP-----PASAPQQAPAVPLPETTSQLLAARQQLQRAQGAT 436
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1712965705 868 EAPLAEDVAAPVVEvtPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPP--PSA 930
Cdd:PRK07994 437 KAKKSEPAAASRAR--PVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVatPKA 499
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
691-847 |
1.19e-06 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 52.56 E-value: 1.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 691 AVAAAPLVQDVITPVVEVTPPPSEEAVAAAAAPLVQdviAPVVEVTPPPSAEAPLAEDVAAPVVEVTPP---PSAEAPLA 767
Cdd:PRK07994 363 APLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPA---VPPPPASAPQQAPAVPLPETTSQLLAARQQlqrAQGATKAK 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 768 EDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPP--PSAEPPLAEDVVAPviEVTPPPS 845
Cdd:PRK07994 440 KSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVatPKALKKALEHEKTP--ELAAKLA 517
|
..
gi 1712965705 846 AE 847
Cdd:PRK07994 518 AE 519
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
50-223 |
1.31e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.84 E-value: 1.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 50 ERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYE---AAVEQLKGDQIRiQGEERRKTLNEETKQHQARAQY 126
Cdd:PTZ00121 1460 EEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEakkAAEAKKKADEAK-KAEEAKKADEAKKAEEAKKADE 1538
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 127 QDKLARQRYEDQLRQQqilneENLRKQEEsVQKQEAMRKATIEHEMELRHKNELLRIE------------------AESK 188
Cdd:PTZ00121 1539 AKKAEEKKKADELKKA-----EELKKAEE-KKKAEEAKKAEEDKNMALRKAEEAKKAEearieevmklyeeekkmkAEEA 1612
|
170 180 190
....*....|....*....|....*....|....*..
gi 1712965705 189 ARARVERENADIIR--EQIRLKAAEHRQTVLESIKTA 223
Cdd:PTZ00121 1613 KKAEEAKIKAEELKkaEEEKKKVEQLKKKEAEEKKKA 1649
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
60-221 |
1.55e-06 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 51.88 E-value: 1.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 60 DKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERRKTLNEETKQHQARAQyQDKLARQRYEDQL 139
Cdd:pfam15709 359 EQRRLQQEQLERAEKMREELELEQQRRFEEIRLRKQRLEEERQRQEEEERKQRLQLQAAQERARQQ-QEEFRRKLQELQR 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 140 RQQQilnEENLRKQ-EESVQKQEAMRKATiEH----EMELRHKNELLRIEAESKARARVErenadiiREQIRLKAAEHRQ 214
Cdd:pfam15709 438 KKQQ---EEAERAEaEKQRQKELEMQLAE-EQkrlmEMAEEERLEYQRQKQEAEEKARLE-------AEERRQKEEEAAR 506
|
....*..
gi 1712965705 215 TVLESIK 221
Cdd:pfam15709 507 LALEEAM 513
|
|
| RecA-like_CDC48_r2-like |
cd19528 |
second of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or ... |
340-465 |
1.75e-06 |
|
second of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or VCP in metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the second of the two ATPase domains. CDC48's roles include in the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis, and in the formation of the nuclear envelope, and of the transitional endoplasmic reticulum (tER). This RecA-like_cdc48_r2-like subfamily belongs to the RecA-like family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410936 [Multi-domain] Cd Length: 161 Bit Score: 49.05 E-value: 1.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMG-RDGVTAMHKVFDWANTSRRgLLLFVDEADAFLRKRSTeK 418
Cdd:cd19528 28 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWfGESEANVRDIFDKARAAAP-CVLFFDELDSIAKARGG-N 105
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1712965705 419 ISEDLRAT---LNAFLYRT-GEQSNKFMLVL-ASNQPEQFDWAI--NDRIDEIV 465
Cdd:cd19528 106 IGDAGGAAdrvINQILTEMdGMNTKKNVFIIgATNRPDIIDPAIlrPGRLDQLI 159
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
36-223 |
2.05e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.07 E-value: 2.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 36 KPKDKWSNFDPTGLERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERR----K 111
Cdd:PTZ00121 1073 KPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKaedaK 1152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 112 TLNEETKQHQARAQYQDKLAR--QRYEDQLRQQQILNEENLRKQE-----------ESVQKQEAMRKATIEHEMELRHKN 178
Cdd:PTZ00121 1153 RVEIARKAEDARKAEEARKAEdaKKAEAARKAEEVRKAEELRKAEdarkaeaarkaEEERKAEEARKAEDAKKAEAVKKA 1232
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965705 179 ELLRIEAESKARARVERENADI-----------IREQIRLKAAEHRQTvlESIKTA 223
Cdd:PTZ00121 1233 EEAKKDAEEAKKAEEERNNEEIrkfeearmahfARRQAAIKAEEARKA--DELKKA 1286
|
|
| RecA-like_CDC48_r1-like |
cd19519 |
first of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or VCP ... |
340-457 |
2.17e-06 |
|
first of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. CDC48's roles include in the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis, and in the formation of the nuclear envelope, and of the transitional endoplasmic reticulum (tER). This RecA-like_cdc48_r1-like subfamily belongs to the RecA-like family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410927 [Multi-domain] Cd Length: 166 Bit Score: 48.59 E-value: 2.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDV-APMGRDGVTAMHKVFDWANTSRRGlLLFVDEADAFLRKRSTEK 418
Cdd:cd19519 35 RGILLYGPPGTGKTLIARAVANETGAFFFLINGPEImSKLAGESESNLRKAFEEAEKNAPA-IIFIDEIDAIAPKREKTH 113
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1712965705 419 ISEDLRATLNAFLYRTGEQSNKFMLVL-ASNQPEQFDWAI 457
Cdd:cd19519 114 GEVERRIVSQLLTLMDGLKQRAHVIVMaATNRPNSIDPAL 153
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
49-221 |
2.25e-06 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 50.69 E-value: 2.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 49 LERAAQAAKDLDKsrhAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKGDQiriqgEERRKTLNEETKQHQAR--AQY 126
Cdd:pfam13868 122 LEKQRQLREEIDE---FNEEQAEWKELEKEEEREEDERILEYLKEKAEREEER-----EAEREEIEEEKEREIARlrAQQ 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 127 QDKLARQRYEDQLRQQQILnEENLRKQEEsVQKQEAMRKATIEHEM------ELRHKNELLRIEA--ESKARARVERENA 198
Cdd:pfam13868 194 EKAQDEKAERDELRAKLYQ-EEQERKERQ-KEREEAEKKARQRQELqqareeQIELKERRLAEEAerEEEEFERMLRKQA 271
|
170 180
....*....|....*....|....*....
gi 1712965705 199 DIIR------EQIRLKAAEHRQTVLESIK 221
Cdd:pfam13868 272 EDEEieqeeaEKRRMKRLEHRRELEKQIE 300
|
|
| RecA-like_CDC48_NLV2_r1-like |
cd19503 |
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and ... |
340-457 |
2.59e-06 |
|
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. This subfamily also includes the first of the two ATPase domains of NVL (nuclear VCP-like protein) 2, an isoform of NVL mainly present in the nucleolus, which is involved in ribosome biogenesis, in telomerase assembly and the regulation of telomerase activity, and in pre-rRNA processing. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410911 [Multi-domain] Cd Length: 165 Bit Score: 48.44 E-value: 2.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVapMGR---DGVTAMHKVFDWANTSRRGlLLFVDEADAFLRKRST 416
Cdd:cd19503 35 RGVLLHGPPGTGKTLLARAVANEAGANFLSISGPSI--VSKylgESEKNLREIFEEARSHAPS-IIFIDEIDALAPKREE 111
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1712965705 417 --EKISEDLRATLNAfLYRTGEQSNKFMLVLASNQPEQFDWAI 457
Cdd:cd19503 112 dqREVERRVVAQLLT-LMDGMSSRGKVVVIAATNRPDAIDPAL 153
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
63-218 |
2.66e-06 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 50.69 E-value: 2.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 63 RHAKEALDLARMQ-EQSTQLEHQSKIKeYEAAVEQLKGDQIRIqgEERRKTLNEETKQHQARAQyqdklARQRYEDQLrQ 141
Cdd:pfam13868 9 RELNSKLLAAKCNkERDAQIAEKKRIK-AEEKEEERRLDEMME--EERERALEEEEEKEEERKE-----ERKRYRQEL-E 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1712965705 142 QQILNEENLRKQEESVQKQEA-MRKATIEHEMELRHKNELLRIEAESKARarveRENADIIREQIRLKAAEHRQTVLE 218
Cdd:pfam13868 80 EQIEEREQKRQEEYEEKLQEReQMDEIVERIQEEDQAEAEEKLEKQRQLR----EEIDEFNEEQAEWKELEKEEEREE 153
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
50-232 |
2.68e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.68 E-value: 2.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 50 ERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEaavEQLKGDQIRIQGEE--------RRKTLNEETKQHQ 121
Cdd:PTZ00121 1603 EEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAE---EKKKAEELKKAEEEnkikaaeeAKKAEEDKKKAEE 1679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 122 ARAQYQDKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKAtiehEMELRHKNELLRIEAESKAR----ARVEREN 197
Cdd:PTZ00121 1680 AKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKA----EEENKIKAEEAKKEAEEDKKkaeeAKKDEEE 1755
|
170 180 190
....*....|....*....|....*....|....*
gi 1712965705 198 adiiREQIRLKAAEHRQTVLESIKTAGAVFGEGFR 232
Cdd:PTZ00121 1756 ----KKKIAHLKKEEEKKAEEIRKEKEAVIEEELD 1786
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
49-255 |
2.90e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.31 E-value: 2.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 49 LERAAQAAKDLDKSRHAKEALD--LARMQEQSTQLEHqsKIKEYEAAVEQLKGDQIRIQGEERRKTLNEETKQHQARAQY 126
Cdd:COG4717 80 LKEAEEKEEEYAELQEELEELEeeLEELEAELEELRE--ELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEE 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 127 QDKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEM----ELRHKNELLRIEAEskaRARVERENADIIR 202
Cdd:COG4717 158 LRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEElqqrLAELEEELEEAQEE---LEELEEELEQLEN 234
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1712965705 203 EQIRLKAAEHRQTVLESIKTAGAVFgeGFRAFVSDWDKVTATVAGLTLLAVGV 255
Cdd:COG4717 235 ELEAAALEERLKEARLLLLIAAALL--ALLGLGGSLLSLILTIAGVLFLVLGL 285
|
|
| RecA-like_Figl-1 |
cd19525 |
ATPase domain of Fidgetin-Like 1 (FIGL-1); FIGL-1 may participate in DNA repair in the nucleus; ... |
340-461 |
3.41e-06 |
|
ATPase domain of Fidgetin-Like 1 (FIGL-1); FIGL-1 may participate in DNA repair in the nucleus; it may be involved in DNA double-strand break repair via homologous recombination. Caenorhabditis elegans FIGL-1 is a nuclear protein and controls the mitotic progression in the germ line and mouse FIGL-1 may be involved in the control of male meiosis. human FIGL-1 has been shown to be a centrosome protein involved in ciliogenesis perhaps as a microtubule-severing protein. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410933 [Multi-domain] Cd Length: 186 Bit Score: 48.45 E-value: 3.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPM----GRDGVTAMHKVFDWANTSrrglLLFVDEADAFLRKRS 415
Cdd:cd19525 56 KGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKwvgeGEKMVRALFSVARCKQPA----VIFIDEIDSLLSQRG 131
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1712965705 416 tEKISEDLRATLNAFLYR----TGEQSNKFMLVLASNQPEQFDWAINDRI 461
Cdd:cd19525 132 -EGEHESSRRIKTEFLVQldgaTTSSEDRILVVGATNRPQEIDEAARRRL 180
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
51-200 |
3.76e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.30 E-value: 3.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 51 RAAQAAKDLDKSRhaKEALDLARMQEQSTQLEHQSKIKEYEAAveqlKGDQIRIQGEERRKTLNEETKQHQARAQYQDKL 130
Cdd:PTZ00121 1662 KAAEEAKKAEEDK--KKAEEAKKAEEDEKKAAEALKKEAEEAK----KAEELKKKEAEEKKKAEELKKAEEENKIKAEEA 1735
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 131 ARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELlrIEAESKARARVERENADI 200
Cdd:PTZ00121 1736 KKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEEL--DEEDEKRRMEVDKKIKDI 1803
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
622-837 |
3.83e-06 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 51.03 E-value: 3.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 622 VAAPQIQDVITQVLE--AMPPPSVEAAAPQAQDVATPIAEVTPPPSVEVEPPLVPDVIAPIVEVTPPPSEEAVAAAPlvq 699
Cdd:PRK12323 378 AAAPVAQPAPAAAAPaaAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAP--- 454
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 700 dVITPVvEVTPPPSEEAVaaaaaplvqdviAPVVEVTPPPSAEAPLAEDVAAPvveVTPPPSAEAPLAEDVAAPVVEVTP 779
Cdd:PRK12323 455 -AAAPA-AAARPAAAGPR------------PVAAAAAAAPARAAPAAAPAPAD---DDPPPWEELPPEFASPAPAQPDAA 517
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1712965705 780 PPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPP-LAEDVVAPV 837
Cdd:PRK12323 518 PAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPrASASGLPDM 576
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
682-898 |
4.03e-06 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 50.75 E-value: 4.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 682 EVTPPPSEEAVAAAPLVQDVITPVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPS 761
Cdd:PRK07764 599 GPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAP 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 762 AEAPLAEDVAAPVVEVTPPPSAEAPlaEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVT 841
Cdd:PRK07764 679 AAPPPAPAPAAPAAPAGAAPAQPAP--APAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPA 756
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1712965705 842 PPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPvvevtPPPSAEAPLAEDVAA 898
Cdd:PRK07764 757 QPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSM-----DDEDRRDAEEVAMEL 808
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
737-919 |
4.14e-06 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 50.75 E-value: 4.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 737 PPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPV 816
Cdd:PRK07764 628 APAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAA 707
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 817 VEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAE------DVAAPVVEVTPPPSAEAPLAEDVAAPVvevtPPPSAEA 890
Cdd:PRK07764 708 TPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPepddppDPAGAPAQPPPPPAPAPAAAPAAAPPP----SPPSEEE 783
|
170 180
....*....|....*....|....*....
gi 1712965705 891 PLAEDVAAPVvevtPPPSVEAPLAEDVAA 919
Cdd:PRK07764 784 EMAEDDAPSM----DDEDRRDAEEVAMEL 808
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
50-211 |
4.25e-06 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 49.92 E-value: 4.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 50 ERAAQAAkdlDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLK------GDQIRIQGEERRKTLNEETKQHQAR 123
Cdd:pfam13868 23 ERDAQIA---EKKRIKAEEKEEERRLDEMMEEERERALEEEEEKEEERKeerkryRQELEEQIEEREQKRQEEYEEKLQE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 124 AQYQDKLARQRYEDQLRQQQILNEENLRKQEEsVQKQEAMRKATIEhEMELRHKNELLRIEAESKARARVERENADIIRE 203
Cdd:pfam13868 100 REQMDEIVERIQEEDQAEAEEKLEKQRQLREE-IDEFNEEQAEWKE-LEKEEEREEDERILEYLKEKAEREEEREAEREE 177
|
....*...
gi 1712965705 204 QIRLKAAE 211
Cdd:pfam13868 178 IEEEKERE 185
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
599-809 |
4.74e-06 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 50.64 E-value: 4.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 599 APQAKDVVAPVVEVTPPPPPSAEVAAPQIQdvitqvlEAMPPPSVEAAAPQAQDVATPIAEVTPPPSVEVEPPLVPDVIA 678
Cdd:PRK12323 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAP-------PAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPG 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 679 PIVEVTP-PPSEEAVAAAPLVQDVITPVVEVTPPPSEEAVAAAAAPLVQDViaPVVEVTPPPSAEAPLAEDVAAPVVEVT 757
Cdd:PRK12323 446 GAPAPAPaPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDP--PPWEELPPEFASPAPAQPDAAPAGWVA 523
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1712965705 758 PPPSAEAPLAEDVAAPVVEVtPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLA 809
Cdd:PRK12323 524 ESIPDPATADPDDAFETLAP-APAAAPAPRAAAATEPVVAPRPPRASASGLP 574
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
51-214 |
5.64e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.52 E-value: 5.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 51 RAAQAAKDLDKSRHAKEAldlaRMQEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERRKtLNEETKQHQARAQYQDKL 130
Cdd:PTZ00121 1200 RKAEAARKAEEERKAEEA----RKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRK-FEEARMAHFARRQAAIKA 1274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 131 ARQRYEDQLRQ-QQILNEENLRKQEESVQKQEAMRKATIEHEM-ELRHKNELLRIEAESKARARVERENADIIREQ---- 204
Cdd:PTZ00121 1275 EEARKADELKKaEEKKKADEAKKAEEKKKADEAKKKAEEAKKAdEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAeaea 1354
|
170
....*....|..
gi 1712965705 205 --IRLKAAEHRQ 214
Cdd:PTZ00121 1355 aaDEAEAAEEKA 1366
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
51-221 |
6.85e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.52 E-value: 6.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 51 RAAQAAKDLDKSRHAKE---ALDL-----ARMQEQSTQLEHQSKIKEYEAAVEQLKGDQIRiQGEERRKTLNEETKQHQA 122
Cdd:PTZ00121 1170 RKAEDAKKAEAARKAEEvrkAEELrkaedARKAEAARKAEEERKAEEARKAEDAKKAEAVK-KAEEAKKDAEEAKKAEEE 1248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 123 RAQYQ-DKLARQRYEDQLRQQQILNEEN------LRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVER 195
Cdd:PTZ00121 1249 RNNEEiRKFEEARMAHFARRQAAIKAEEarkadeLKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1328
|
170 180
....*....|....*....|....*.
gi 1712965705 196 ENADIIReqirlKAAEHRQTVLESIK 221
Cdd:PTZ00121 1329 KKADAAK-----KKAEEAKKAAEAAK 1349
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
689-915 |
6.94e-06 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 49.99 E-value: 6.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 689 EEAVAAAPLVQDVITPVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSAEAPLAEDVAApvvEVTPPPSAEAPLAE 768
Cdd:PRK12727 48 EELVQRALETARSDTPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIA---AMALRQPVSVPRQA 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 769 DVAAPVVEVTPPPSAEAPLAedVAAPVVEVTPPPSAEAPLAEDV-AAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAE 847
Cdd:PRK12727 125 PAAAPVRAASIPSPAAQALA--HAAAVRTAPRQEHALSAVPEQLfADFLTTAPVPRAPVQAPVVAAPAPVPAIAAALAAH 202
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1712965705 848 VPLAEDVAAPVVEvtPPPSAEAPLAEDVAAPVVevtpPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAE 915
Cdd:PRK12727 203 AAYAQDDDEQLDD--DGFDLDDALPQILPPAAL----PPIVVAPAAPAALAAVAAAAPAPQNDEELKQ 264
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
51-221 |
7.39e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.14 E-value: 7.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 51 RAAQAAKDLDKSRHAKEALDLaRMQEQSTQLEHQSKIKEYE----AAVEQLKGDQIRIQGEERRKTlNEETKQHQARAQY 126
Cdd:PTZ00121 1626 KKAEEEKKKVEQLKKKEAEEK-KKAEELKKAEEENKIKAAEeakkAEEDKKKAEEAKKAEEDEKKA-AEALKKEAEEAKK 1703
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 127 QDKLARQRYEDQLRQQQILNEENLR--KQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARA-RVERENADIIRE 203
Cdd:PTZ00121 1704 AEELKKKEAEEKKKAEELKKAEEENkiKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAeEIRKEKEAVIEE 1783
|
170
....*....|....*...
gi 1712965705 204 QIRLKAAEHRQTVLESIK 221
Cdd:PTZ00121 1784 ELDEEDEKRRMEVDKKIK 1801
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
50-221 |
7.52e-06 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 49.15 E-value: 7.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 50 ERAAQAAKDLDKSRHAKEA----LDLARMQEQSTQLEHQSKIKEYEAAVEQLKGD--QIRIQGEERRKTLNEETKQHQAR 123
Cdd:pfam13868 155 ERILEYLKEKAEREEEREAereeIEEEKEREIARLRAQQEKAQDEKAERDELRAKlyQEEQERKERQKEREEAEKKARQR 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 124 A------QYQDKLARQRYEDQLRQQQILNEENLRKQEEsvQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVEREN 197
Cdd:pfam13868 235 QelqqarEEQIELKERRLAEEAEREEEEFERMLRKQAE--DEEIEQEEAEKRRMKRLEHRRELEKQIEEREEQRAAEREE 312
|
170 180
....*....|....*....|....
gi 1712965705 198 ADIIREQIRlKAAEHRQTVLESIK 221
Cdd:pfam13868 313 ELEEGERLR-EEEAERRERIEEER 335
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
55-223 |
7.82e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.06 E-value: 7.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 55 AAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKG-------DQIRIQGE-----ERRKTLNEETKQHQA 122
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLevseleeEIEELQKElyalaNEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 123 RAQY--QDKLARQRYEDQLRQQQILNEENL---RKQEESVQKQ-EAMRKATIEHEM---ELRHKNELLRIEAESKARARV 193
Cdd:TIGR02168 310 RLANleRQLEELEAQLEELESKLDELAEELaelEEKLEELKEElESLEAELEELEAeleELESRLEELEEQLETLRSKVA 389
|
170 180 190
....*....|....*....|....*....|....*.
gi 1712965705 194 ERE------NADIIREQIRLKAAEHRQTVLESIKTA 223
Cdd:TIGR02168 390 QLElqiaslNNEIERLEARLERLEDRRERLQQEIEE 425
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
795-902 |
9.00e-06 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 49.42 E-value: 9.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 795 VVE--VTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTP-PPSAEVPLAEDVAAPVVEVTPPPSAEAPL 871
Cdd:PRK14950 355 VIEalLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVReTATPPPVPPRPVAPPVPHTPESAPKLTRA 434
|
90 100 110
....*....|....*....|....*....|.
gi 1712965705 872 AEDVAAPVVEVTPPPSAEAPLAEDVAAPVVE 902
Cdd:PRK14950 435 AIPVDEKPKYTPPAPPKEEEKALIADGDVLE 465
|
|
| SPS1 |
COG0515 |
Serine/threonine protein kinase [Signal transduction mechanisms]; |
675-932 |
9.30e-06 |
|
Serine/threonine protein kinase [Signal transduction mechanisms];
Pssm-ID: 440281 [Multi-domain] Cd Length: 482 Bit Score: 49.24 E-value: 9.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 675 DVIAPIVEVTPPPSEEAVAAAPL-VQDVITPVVEVTP---PPSEEAVAAAAAPLVQDVIAPVVEVTPPPSAEAPLAEDVA 750
Cdd:COG0515 215 ELLRAHLREPPPPPSELRPDLPPaLDAIVLRALAKDPeerYQSAAELAAALRAVLRSLAAAAAAAAAAAAAAAAAAAAAA 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 751 APVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLA 830
Cdd:COG0515 295 AAAAAAAAAAAAAAAAAAAAAAAAAAAAPAAAAAAAAAAAALAAAAAAAAAAAAAALLAAAAALAAAAAAAAAAAAAAAA 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 831 EDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVE 910
Cdd:COG0515 375 AAAAAAAAAALAAAAAAAAAAAAAALAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAAAAAAAAAARLLAAAAAAAAA 454
|
250 260
....*....|....*....|..
gi 1712965705 911 APLAEDVAAPVVEVTPPPSAEV 932
Cdd:COG0515 455 AAAAPLLAALLAAAALAAAAAA 476
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
822-967 |
1.29e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 48.94 E-value: 1.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 822 PPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPlaedvAAPVVEVTPPPSAEAPLAEDVAAPvv 901
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAP-----AAPPAAAPPAPVAAPAAAAPAAAP-- 438
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965705 902 evtppPSVEAPLAEDVAAPVVEVTPPPSAEVKctlsdgldsdntVKAEPASETEHLAQPAASAETE 967
Cdd:PRK14951 439 -----AAAPAAVALAPAPPAQAAPETVAIPVR------------VAPEPAVASAAPAPAAAPAAAR 487
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
49-214 |
1.45e-05 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 48.38 E-value: 1.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 49 LERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQsKIKEYEAAV---EQLKGDQIRIQGEERRKTLNEETKQHQARaQ 125
Cdd:pfam13868 53 RERALEEEEEKEEERKEERKRYRQELEEQIEEREQK-RQEEYEEKLqerEQMDEIVERIQEEDQAEAEEKLEKQRQLR-E 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 126 YQDKLARQRYEDQLRQQQILNEENLR------KQEESVQKQEAMRK--------------ATIEHEMELRHKNELLRI-- 183
Cdd:pfam13868 131 EIDEFNEEQAEWKELEKEEEREEDERileylkEKAEREEEREAEREeieeekereiarlrAQQEKAQDEKAERDELRAkl 210
|
170 180 190
....*....|....*....|....*....|....
gi 1712965705 184 ---EAESKARARVERENADIIREQIRLKAAEHRQ 214
Cdd:pfam13868 211 yqeEQERKERQKEREEAEKKARQRQELQQAREEQ 244
|
|
| RecA-like_spastin |
cd19524 |
ATPase domain of spastin; Spastin is an ATP-dependent microtubule-severing protein involved in ... |
340-461 |
1.53e-05 |
|
ATPase domain of spastin; Spastin is an ATP-dependent microtubule-severing protein involved in microtubule dynamics; it specifically recognizes and cuts microtubules that are polyglutamylated. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410932 [Multi-domain] Cd Length: 164 Bit Score: 46.38 E-value: 1.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 340 RNILMYGPPGTGKTLFAKKLAMHSGMDY-----AIMTGGDVApmgrDGVTAMHKVFDWAnTSRRGLLLFVDEADAFLRKR 414
Cdd:cd19524 34 RGLLLFGPPGNGKTMLAKAVAAESNATFfnisaASLTSKYVG----EGEKLVRALFAVA-RELQPSIIFIDEVDSLLSER 108
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1712965705 415 STEKISEDLRATLNAFLYRTGEQSNKFMLVL---ASNQPEQFDWAINDRI 461
Cdd:cd19524 109 SEGEHEASRRLKTEFLIEFDGVQSNGDDRVLvmgATNRPQELDDAVLRRF 158
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
712-967 |
1.73e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 49.17 E-value: 1.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 712 PSEEAVAAAAAPLVQDVIAPVVEVTPPPSAEAPlaEDVAAPVVEVTPPPSAEAPlaEDVAAPVVEVTPPPSAEAPLAEDV 791
Cdd:PHA03247 236 PFVERRVVISHPLRGDIAAPAPPPVVGEGADRA--PETARGATGPPPPPEAAAP--NGAAAPPDGVWGAALAGAPLALPA 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 792 AAPVvevTPPPSAEAPLAEDVAAPVVEVTPP-----------------PSAEPPLA-EDVVA--PVIEVTPPPSAEVPLA 851
Cdd:PHA03247 312 PPDP---PPPAPAGDAEEEDDEDGAMEVVSPlprprqhyplgfpkrrrPTWTPPSSlEDLSAgrHHPKRASLPTRKRRSA 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 852 EDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDvaapvvevTPPPSVEAPLAEDVAAPVVEVTPPPSAE 931
Cdd:PHA03247 389 RHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPA--------TPLPSAEPGSDDGPAPPPERQPPAPATE 460
|
250 260 270
....*....|....*....|....*....|....*.
gi 1712965705 932 VKCTLSDgldsDNTVKAEPASETEHLAQPAASAETE 967
Cdd:PHA03247 461 PAPDDPD----DATRKALDALRERRPPEPPGADLAE 492
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
772-960 |
1.75e-05 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 48.93 E-value: 1.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 772 APVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAeDVAAPVVEVTPPPSAEPPlaEDVVAPVIEVTPPPSAEVPLA 851
Cdd:PRK10263 314 APITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDV-PPAQPTVAWQPVPGPQTG--EPVIAPAPEGYPQQSQYAQPA 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 852 EDVAAPVVEVTPP-----------PSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDV-----AAPVVEVTPPPSVEAPLAE 915
Cdd:PRK10263 391 VQYNEPLQQPVQPqqpyyapaaeqPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAwqaeeQQSTFAPQSTYQTEQTYQQ 470
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1712965705 916 DVAAPVVEVTPPPsaevkctlsdgLDSDNTVKAEPASETEHLAQP 960
Cdd:PRK10263 471 PAAQEPLYQQPQP-----------VEQQPVVEPEPVVEETKPARP 504
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
673-831 |
1.78e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 48.71 E-value: 1.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 673 VPDVIAPIVEVTPPPSEEAVAAAPLVQDVITPVVEVTPP---PSEEAVAAAAAPLVQDVIAPVVEVTPPPSAEAPLAEDV 749
Cdd:PRK07994 365 LPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPasaPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPA 444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 750 AAPVVEvtPPPSAEAPLAEDVAAPVVEVTPPPSAEA----PLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSA 825
Cdd:PRK07994 445 AASRAR--PVNSALERLASVRPAPSALEKAPAKKEAyrwkATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAAEAIE 522
|
....*.
gi 1712965705 826 EPPLAE 831
Cdd:PRK07994 523 RDPWAA 528
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
749-860 |
1.93e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 48.65 E-value: 1.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 749 VAAPVVEVTPPPSAEAPlaeDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSaeaPLAEDVAAPVVEVTPPPSAEPP 828
Cdd:PRK14950 360 LVPVPAPQPAKPTAAAP---SPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPP---VPPRPVAPPVPHTPESAPKLTR 433
|
90 100 110
....*....|....*....|....*....|..
gi 1712965705 829 LAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVE 860
Cdd:PRK14950 434 AAIPVDEKPKYTPPAPPKEEEKALIADGDVLE 465
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
812-923 |
2.12e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 48.27 E-value: 2.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 812 VAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVvevTPPPSAeaplAEDVAAPVVEVTPPPSAEAP 891
Cdd:PRK14950 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETA---TPPPVP----PRPVAPPVPHTPESAPKLTR 433
|
90 100 110
....*....|....*....|....*....|..
gi 1712965705 892 LAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVE 923
Cdd:PRK14950 434 AAIPVDEKPKYTPPAPPKEEEKALIADGDVLE 465
|
|
| PRK11633 |
PRK11633 |
cell division protein DedD; Provisional |
799-879 |
2.27e-05 |
|
cell division protein DedD; Provisional
Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 46.92 E-value: 2.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 799 TPPPSA-EAPLAEDVAAPVVEvtPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPS-AEAPLAEDVA 876
Cdd:PRK11633 66 QPPEGAaEAVRAGDAAAPSLD--PATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKpEPKPVVEEKA 143
|
...
gi 1712965705 877 APV 879
Cdd:PRK11633 144 APT 146
|
|
| flagell_FliJ |
TIGR02473 |
flagellar export protein FliJ; Members of this family are the FliJ protein found, in nearly ... |
69-193 |
2.60e-05 |
|
flagellar export protein FliJ; Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Pssm-ID: 131526 [Multi-domain] Cd Length: 141 Bit Score: 45.00 E-value: 2.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 69 LDLARMQEQSTQLEHQSKIKEYEAAVEQLkgDQIRIQGEERRKTLNEETK------QHQARAQYQDKLarqryeDQLRQQ 142
Cdd:TIGR02473 8 LDLREKEEEQAKLELAKAQAEFERLETQL--QQLIKYREEYEQQALEKVGagtsalELSNYQRFIRQL------DQRIQQ 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1712965705 143 QILNEENLRKQEEsvQKQEAMRKATIEHEM--ELRHKNELLRIEAESKARARV 193
Cdd:TIGR02473 80 QQQELALLQQEVE--AKRERLLEARRELKAleKLKEKKQKEYRAEEAKREQKE 130
|
|
| ATG16 |
pfam08614 |
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for ... |
73-211 |
3.08e-05 |
|
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for eukaryotic cells. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. ATG16 (also known as Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway.
Pssm-ID: 462536 [Multi-domain] Cd Length: 176 Bit Score: 45.69 E-value: 3.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 73 RMQEQSTQLEHQSKikEYEAAVEQLKGDQIRIQGEERRKTLNEETKQHQARAQYQDKLA---RQRYEdqlRQQQI--LNE 147
Cdd:pfam08614 11 RLLDRTALLEAENA--KLQSEPESVLPSTSSSKLSKASPQSASIQSLEQLLAQLREELAelyRSRGE---LAQRLvdLNE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 148 ENLRKQEESVQKQEAMRKATIE----------HEMELRHKNEL----------LRIE---AESKARaRVERENADIIREQ 204
Cdd:pfam08614 86 ELQELEKKLREDERRLAALEAEraqleeklkdREEELREKRKLnqdlqdelvaLQLQlnmAEEKLR-KLEKENRELVERW 164
|
....*..
gi 1712965705 205 IRLKAAE 211
Cdd:pfam08614 165 MKRKGQE 171
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
696-818 |
3.45e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 47.50 E-value: 3.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 696 PLVQDVITPVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSAEAPLAEDVAAPVvevTPPPSAeaplAEDVAAPVV 775
Cdd:PRK14950 350 PLELAVIEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETA---TPPPVP----PRPVAPPVP 422
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1712965705 776 EVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVE 818
Cdd:PRK14950 423 HTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALIADGDVLE 465
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
763-898 |
3.98e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 47.67 E-value: 3.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 763 EAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDvAAPVVEVTPPPSAEPPLAEDVVAPVIEVTP 842
Cdd:PRK07764 382 ERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQ-PAPAPAPAPAPPSPAGNAPAGGAPSPPPAA 460
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965705 843 PPSAEvPLAEDVAAPvvevtPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAA 898
Cdd:PRK07764 461 APSAQ-PAPAPAAAP-----EPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAA 510
|
|
| SPS1 |
COG0515 |
Serine/threonine protein kinase [Signal transduction mechanisms]; |
727-968 |
4.90e-05 |
|
Serine/threonine protein kinase [Signal transduction mechanisms];
Pssm-ID: 440281 [Multi-domain] Cd Length: 482 Bit Score: 46.93 E-value: 4.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 727 DVIAPVVEVTPPPSAEapLAEDVAAPVVEV-------TP---PPSAEAPLAE--------DVAAPVVEVTPPPSAEAPLA 788
Cdd:COG0515 215 ELLRAHLREPPPPPSE--LRPDLPPALDAIvlralakDPeerYQSAAELAAAlravlrslAAAAAAAAAAAAAAAAAAAA 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 789 EDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAE 868
Cdd:COG0515 293 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAPAAAAAAAAAAAALAAAAAAAAAAAAAALLAAAAALAAAAAAAAAAAAAA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 869 APLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPPSAEVKCTLSDGLDSDNTVKA 948
Cdd:COG0515 373 AAAAAAAAAAAALAAAAAAAAAAAAAALAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAAAAAAAAAARLLAAAAAAA 452
|
250 260
....*....|....*....|
gi 1712965705 949 EPASETEHLAQPAASAETEA 968
Cdd:COG0515 453 AAAAAAPLLAALLAAAALAA 472
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
813-962 |
5.37e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 47.17 E-value: 5.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 813 AAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPlAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPL 892
Cdd:PRK07994 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPA-VPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 893 AEDVAAPVVEvtPPPSVEAPLAEDVAAPVVEVTPPPSAEVkctlsDGLDSDNTVKAEPASETEHLAQPAA 962
Cdd:PRK07994 441 SEPAAASRAR--PVNSALERLASVRPAPSALEKAPAKKEA-----YRWKATNPVEVKKEPVATPKALKKA 503
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
773-903 |
5.53e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 46.86 E-value: 5.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 773 PVVEVTPPPSAEAPL---AEDVAAPVVEVTPPPSA-EAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPvievtPPPSAEV 848
Cdd:PRK14954 376 NDGGVAPSPAGSPDVkkkAPEPDLPQPDRHPGPAKpEAPGARPAELPSPASAPTPEQQPPVARSAPLP-----PSPQASA 450
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1712965705 849 PLAEDVAAPVVEVTpppSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEV 903
Cdd:PRK14954 451 PRNVASGKPGVDLG---SWQGKFMNFTRNGSRKQPVQASSSDAAQTGVFEGVAEL 502
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
53-211 |
6.38e-05 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 46.61 E-value: 6.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 53 AQAAKDLDKSRHAKEAL--DLARMQEQSTQLEHQSKIKE------YEAAVEQLK--GDQIRIQGEE-------------- 108
Cdd:PRK11637 85 SQASRKLRETQNTLNQLnkQIDELNASIAKLEQQQAAQErllaaqLDAAFRQGEhtGLQLILSGEEsqrgerilayfgyl 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 109 ---RRKTLNE--ETKQH--QARAQYQDKLARQR---YEDQLRQQQILNEENLRKQ-----EESVQKQEAMRKATIEHEME 173
Cdd:PRK11637 165 nqaRQETIAElkQTREElaAQKAELEEKQSQQKtllYEQQAQQQKLEQARNERKKtltglESSLQKDQQQLSELRANESR 244
|
170 180 190
....*....|....*....|....*....|....*...
gi 1712965705 174 LRhkNELLRIEAESKARArvEREnadiIREQIRLKAAE 211
Cdd:PRK11637 245 LR--DSIARAEREAKARA--ERE----AREAARVRDKQ 274
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
724-839 |
6.79e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 46.73 E-value: 6.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 724 LVQDVIAPV-VEVTPPPSAEAPlaeDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSaeaPLAEDVAAPVVEVTPPP 802
Cdd:PRK14950 355 VIEALLVPVpAPQPAKPTAAAP---SPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPP---VPPRPVAPPVPHTPESA 428
|
90 100 110
....*....|....*....|....*....|....*..
gi 1712965705 803 SAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIE 839
Cdd:PRK14950 429 PKLTRAAIPVDEKPKYTPPAPPKEEEKALIADGDVLE 465
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
49-214 |
7.17e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 7.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 49 LERAAQAAKDLDKSRHAKEALDLARMQE-QSTQLEHQSKIKEYEAAVEQLKGDQIRiQGEERRKTlNEETKQHQARA--Q 125
Cdd:PTZ00121 1229 VKKAEEAKKDAEEAKKAEEERNNEEIRKfEEARMAHFARRQAAIKAEEARKADELK-KAEEKKKA-DEAKKAEEKKKadE 1306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 126 YQDKLARQRYEDQLRQQQilnEENLRKQEESVQK-QEAMRKATIEHEMELRHKNELLRIEAESKArARVERENADIIREQ 204
Cdd:PTZ00121 1307 AKKKAEEAKKADEAKKKA---EEAKKKADAAKKKaEEAKKAAEAAKAEAEAAADEAEAAEEKAEA-AEKKKEEAKKKADA 1382
|
170
....*....|
gi 1712965705 205 IRLKAAEHRQ 214
Cdd:PTZ00121 1383 AKKKAEEKKK 1392
|
|
| PRK11633 |
PRK11633 |
cell division protein DedD; Provisional |
757-837 |
7.41e-05 |
|
cell division protein DedD; Provisional
Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 45.38 E-value: 7.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 757 TPPPSA-EAPLAEDVAAPVVEvtPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEP-PLAEDVV 834
Cdd:PRK11633 66 QPPEGAaEAVRAGDAAAPSLD--PATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPkPVVEEKA 143
|
...
gi 1712965705 835 APV 837
Cdd:PRK11633 144 APT 146
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
50-221 |
7.87e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 7.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 50 ERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKE--YEAAVEQLKGDQIRIQGEERRKTlnEETKQHQARAQYQ 127
Cdd:PTZ00121 1421 DEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEeaKKKAEEAKKADEAKKKAEEAKKA--DEAKKKAEEAKKK 1498
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 128 DKLARQRYEDQLRQqqilneENLRKQEESvQKQEAMRKATiehemELRHKNELLRIEaeskararvERENADIIREQIRL 207
Cdd:PTZ00121 1499 ADEAKKAAEAKKKA------DEAKKAEEA-KKADEAKKAE-----EAKKADEAKKAE---------EKKKADELKKAEEL 1557
|
170
....*....|....
gi 1712965705 208 KAAEHRQTVLESIK 221
Cdd:PTZ00121 1558 KKAEEKKKAEEAKK 1571
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
731-986 |
8.45e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 46.86 E-value: 8.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 731 PVVEVTPPPSAEAP-------------------------LAED--------------VAAPVVEVTPPPSAEAPLAEDV- 770
Cdd:PHA03247 2504 PDPDAPPAPSRLAPailpdepvgepvhprmltwirgleeLASDdagdpppplppaapPAAPDRSVPPPRPAPRPSEPAVt 2583
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 771 ------------AAPVVEVTPP-----PSAEAPLAEDVAAPvvevTPPPSAEAPLAEDVAAPVVEVTPPPSAE------- 826
Cdd:PHA03247 2584 srarrpdappqsARPRAPVDDRgdprgPAPPSPLPPDTHAP----DPPPPSPSPAANEPDPHPPPTVPPPERPrddpapg 2659
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 827 -------------------------PPLAEDVVAPVIEVTPPPSAEvPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVE 881
Cdd:PHA03247 2660 rvsrprrarrlgraaqassppqrprRRAARPTVGSLTSLADPPPPP-PTPEPAPHALVSATPLPPGPAAARQASPALPAA 2738
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 882 VTPPPSAEAPlaedvAAPVVEVTP--PPSVEAPLAEdvAAPVVEVTPPPSAEVKCTLSDGLDSDNTVKAePASETEHLAQ 959
Cdd:PHA03247 2739 PAPPAVPAGP-----ATPGGPARParPPTTAGPPAP--APPAAPAAGPPRRLTRPAVASLSESRESLPS-PWDPADPPAA 2810
|
330 340
....*....|....*....|....*..
gi 1712965705 960 PAASAETEAKMKKEDKTVSPPKDGTPV 986
Cdd:PHA03247 2811 VLAPAAALPPAASPAGPLPPPTSAQPT 2837
|
|
| PRK11633 |
PRK11633 |
cell division protein DedD; Provisional |
778-858 |
8.58e-05 |
|
cell division protein DedD; Provisional
Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 44.99 E-value: 8.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 778 TPPPSA-EAPLAEDVAAPVVEvtPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEV-PLAEDVA 855
Cdd:PRK11633 66 QPPEGAaEAVRAGDAAAPSLD--PATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPkPVVEEKA 143
|
...
gi 1712965705 856 APV 858
Cdd:PRK11633 144 APT 146
|
|
| RecA-like_Yta7-like |
cd19517 |
ATPase domain of Saccharomyces cerevisiae Yta7 and similar ATPase domains; Saccharomyces ... |
340-467 |
8.73e-05 |
|
ATPase domain of Saccharomyces cerevisiae Yta7 and similar ATPase domains; Saccharomyces cerevisiae Yta7 is a chromatin-associated AAA-ATPase involved in regulation of chromatin dynamics. Its human ortholog ANCCA/ATAD2 transcriptionally activates pathways of malignancy in a broad range of cancers. The RecA-like_Yta7 subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410925 [Multi-domain] Cd Length: 170 Bit Score: 44.04 E-value: 8.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 340 RNILMYGPPGTGKTLFAKKLAMHSGMDyaimtGGDVAPMGRDGVTAMHKvfdWANTSRRGL-------------LLFVDE 406
Cdd:cd19517 35 RGVLFHGPPGTGKTLMARALAAECSKG-----GQKVSFFMRKGADCLSK---WVGEAERQLrllfeeayrmqpsIIFFDE 106
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1712965705 407 ADAFLRKRST--EKISEDLRATLNAfLYRTGEQSNKFMLVLASNQPEQFDWAIN--DRIDEIVNF 467
Cdd:cd19517 107 IDGLAPVRSSkqEQIHASIVSTLLA-LMDGLDNRGQVVVIGATNRPDALDPALRrpGRFDREFYF 170
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
742-877 |
9.00e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 46.52 E-value: 9.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 742 EAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDvAAPVVEVTPPPSAEAPLAEDVAAPVVEVTP 821
Cdd:PRK07764 382 ERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQ-PAPAPAPAPAPPSPAGNAPAGGAPSPPPAA 460
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1712965705 822 PPSAEPplaedvvAPVIEVTPPPSA-EVPLAEDVAAPVVEVTPPPSAEAPLAEDVAA 877
Cdd:PRK07764 461 APSAQP-------APAPAAAPEPTAaPAPAPPAAPAPAAAPAAPAAPAAPAGADDAA 510
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
632-789 |
9.04e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 46.40 E-value: 9.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 632 TQVLEAMPPPSVEAAAPQAQDVATPIAEVTPPPSVEVEPPLVPD-VIAPIVEVTPPPSEEAVAAAPLVQdvitpVVEVTP 710
Cdd:PRK07994 363 APLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASApQQAPAVPLPETTSQLLAARQQLQR-----AQGATK 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 711 PPSEEAVAAAAAPLVQDVIAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAA--PVVEVTPPPSAEAPLA 788
Cdd:PRK07994 438 AKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKAlkKALEHEKTPELAAKLA 517
|
.
gi 1712965705 789 E 789
Cdd:PRK07994 518 A 518
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
619-925 |
1.21e-04 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 46.06 E-value: 1.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 619 SAEVAAPQIQDVITQVLEAMPPPS-----VEAAAPqaqDVATPIAEVTPPpsvevepplVPDVIAPIVEVTPPPSEeavA 693
Cdd:pfam05109 470 TADVTSPTPAGTTSGASPVTPSPSprdngTESKAP---DMTSPTSAVTTP---------TPNATSPTPAVTTPTPN---A 534
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 694 AAPLVQDVITPVVEVTPPPSEEAVaaaaaplvqdviAPVVeVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlaedvaaP 773
Cdd:pfam05109 535 TSPTLGKTSPTSAVTTPTPNATSP------------TPAV-TTPTPNATIPTLGKTSPTSAVTTPTPNATSP-------T 594
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 774 VVEVTPPP-SAEAPLAEDVAAPVVeVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPviEVTPPPSAEVPLAE 852
Cdd:pfam05109 595 VGETSPQAnTTNHTLGGTSSTPVV-TSPPKNATSAVTTGQHNITSSSTSSMSLRPSSISETLSP--STSDNSTSHMPLLT 671
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 853 DvAAP-----VVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTP--PP----SVEAPLAEDVAAPV 921
Cdd:pfam05109 672 S-AHPtggenITQVTPASTSTHHVSTSSPAPRPGTTSQASGPGNSSTSTKPGEVNVTKgtPPknatSPQAPSGQKTAVPT 750
|
....
gi 1712965705 922 VEVT 925
Cdd:pfam05109 751 VTST 754
|
|
| RecA-like_fidgetin |
cd19523 |
ATPase domain of fidgetin; Fidgetin (FIGN) is a ATP-dependent microtubule severing protein. ... |
340-460 |
1.21e-04 |
|
ATPase domain of fidgetin; Fidgetin (FIGN) is a ATP-dependent microtubule severing protein. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410931 [Multi-domain] Cd Length: 163 Bit Score: 43.72 E-value: 1.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTG-GDVAPMGRDGVTAMHKVFDWANtSRRGLLLFVDEADAFLRKRSTE- 417
Cdd:cd19523 34 RSILLFGPRGTGKTLLGRCLASQLGATFLRLRGsTLVAKWAGEGEKILQASFLAAR-CRQPSVLFISDLDALLSSQDDEa 112
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1712965705 418 ----KISEDLRATLNAFLyrtGEQSNKFMLVLASNQPEQFDWAINDR 460
Cdd:cd19523 113 spvgRLQVELLAQLDGVL---GSGEDGVLVVCTTSKPEEIDESLRRY 156
|
|
| RarA |
COG2256 |
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ... |
341-411 |
1.24e-04 |
|
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];
Pssm-ID: 441857 [Multi-domain] Cd Length: 439 Bit Score: 45.82 E-value: 1.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 341 NILMYGPPGTGKTLFAKKLAMHSGMDY----AIMtggdvapmgrDGVTAMHKVFDWANTSR---RGLLLFVDE------- 406
Cdd:COG2256 51 SMILWGPPGTGKTTLARLIANATDAEFvalsAVT----------SGVKDIREVIEEARERRaygRRTILFVDEihrfnka 120
|
....*.
gi 1712965705 407 -ADAFL 411
Cdd:COG2256 121 qQDALL 126
|
|
| RecA-like_NVL_r1-like |
cd19518 |
first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL ... |
340-457 |
1.24e-04 |
|
first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL exists in two forms with N-terminal extensions of different lengths in mammalian cells. NVL has two alternatively spliced isoforms, a short form, NVL1, and a long form, NVL2. NVL2, the major species, is mainly present in the nucleolus, whereas NVL1 is nucleoplasmic. Each has an N-terminal domain, followed by two tandem ATPase domains; this subfamily includes the first of the two ATPase domains. NVL2 is involved in the biogenesis of the 60S ribosome subunit by associating specifically with ribosome protein L5 and modulating the function of DOB1. NVL2 is also required for telomerase assembly and the regulation of telomerase activity, and is involved in pre-rRNA processing. The role of NVL1 is unclear. This RecA-like_NVL_r1-like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410926 [Multi-domain] Cd Length: 169 Bit Score: 43.55 E-value: 1.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 340 RNILMYGPPGTGKTLFAKKLAMHSGMD-YAIMTGGDVAPMGRDGVTAMHKVFDWAnTSRRGLLLFVDEADAFLRKRST-- 416
Cdd:cd19518 35 RGVLLHGPPGCGKTMLANAIAGELKVPfLKISATEIVSGVSGESEEKIRELFDQA-ISNAPCIVFIDEIDAITPKRESaq 113
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1712965705 417 ----EKISEDLRATLNAFLYRtgEQSNKFMLVL-ASNQPEQFDWAI 457
Cdd:cd19518 114 remeRRIVSQLLTCMDELNNE--KTAGGPVLVIgATNRPDSLDPAL 157
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
770-881 |
1.27e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 45.96 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 770 VAAPVVEVTPPPSAEAPlaeDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPsaePPLAEDVVAPVIEVTPPPSAEVP 849
Cdd:PRK14950 360 LVPVPAPQPAKPTAAAP---SPVRPTPAPSTRPKAAAAANIPPKEPVRETATPP---PVPPRPVAPPVPHTPESAPKLTR 433
|
90 100 110
....*....|....*....|....*....|..
gi 1712965705 850 LAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVE 881
Cdd:PRK14950 434 AAIPVDEKPKYTPPAPPKEEEKALIADGDVLE 465
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
341-452 |
1.56e-04 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 42.66 E-value: 1.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 341 NILMYGPPGTGKTLFAKKLA------------MHSGMDYAIMTGG-DVAPMG---RDG--VTAMhkvfdwantsRRGLLL 402
Cdd:pfam07728 1 GVLLVGPPGTGKTELAERLAaalsnrpvfyvqLTRDTTEEDLFGRrNIDPGGaswVDGplVRAA----------REGEIA 70
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1712965705 403 FVDEADaflrkrsteKISEDLRATLNAFLY-----------RTGEQSNKFMLVLASNQPEQ 452
Cdd:pfam07728 71 VLDEIN---------RANPDVLNSLLSLLDerrlllpdggeLVKAAPDGFRLIATMNPLDR 122
|
|
| CDC48 |
TIGR01243 |
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two ... |
340-482 |
1.59e-04 |
|
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Pssm-ID: 273521 [Multi-domain] Cd Length: 733 Bit Score: 45.67 E-value: 1.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVapMGR---DGVTAMHKVFDWANTSRRGlLLFVDEADAFLRKRS- 415
Cdd:TIGR01243 213 KGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEI--MSKyygESEERLREIFKEAEENAPS-IIFIDEIDAIAPKREe 289
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 416 -TEKISEDLRATLNAFLYRTGEQSnKFMLVLASNQPEQFDWAIN--DRIDEIVNFALPGPDERDRLVRLY 482
Cdd:TIGR01243 290 vTGEVEKRVVAQLLTLMDGLKGRG-RVIVIGATNRPDALDPALRrpGRFDREIVIRVPDKRARKEILKVH 358
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
68-214 |
1.61e-04 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 45.51 E-value: 1.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 68 ALDLARMQEQSTQLEHQSKIkeyEAAVEQLKGDQIRIQGEERRKTLNEETKQ-HQARAQYQDKLAR--QRYEDQLRQQQI 144
Cdd:pfam07111 480 SLELEQLREERNRLDAELQL---SAHLIQQEVGRAREQGEAERQQLSEVAQQlEQELQRAQESLASvgQQLEVARQGQQE 556
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1712965705 145 LNEENLRKQEESVQKQEAMRKATIEH--EMELRHKNELlrieAESKAR---ARVERENADIIREQIRLKAAEHRQ 214
Cdd:pfam07111 557 STEEAASLRQELTQQQEIYGQALQEKvaEVETRLREQL----SDTKRRlneARREQAKAVVSLRQIQHRATQEKE 627
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
784-911 |
1.76e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 45.36 E-value: 1.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 784 EAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTP 863
Cdd:PRK07764 382 ERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAA 461
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1712965705 864 PPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEA 911
Cdd:PRK07764 462 PSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDA 509
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
763-831 |
2.07e-04 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 45.38 E-value: 2.07e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1712965705 763 EAPLAEDVAAPVVEVTPPPSAEAplAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAE 831
Cdd:COG5373 34 EAELAEAAEAASAPAEPEPEAAA--AATAAAPEAAPAPVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAA 100
|
|
| PRK13108 |
PRK13108 |
prolipoprotein diacylglyceryl transferase; Reviewed |
770-955 |
2.28e-04 |
|
prolipoprotein diacylglyceryl transferase; Reviewed
Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 44.97 E-value: 2.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 770 VAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPP----LAEDVVAPVIEVTPPPS 845
Cdd:PRK13108 266 IGAVVYIILAPKGREAPGALRGSEYVVDEALEREPAELAAAAVASAASAVGPVGPGEPNqpddVAEAVKAEVAEVTDEVA 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 846 AEVPLAEDV----AAPVVEVTPPPSAEAPLAEDVAAPVVEVtpPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPV 921
Cdd:PRK13108 346 AESVVQVADrdgeSTPAVEETSEADIEREQPGDLAGQAPAA--HQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPI 423
|
170 180 190
....*....|....*....|....*....|....
gi 1712965705 922 VEVTPPPSAEVKCTLSDGLDSDNTVKAEPASETE 955
Cdd:PRK13108 424 PDPAKPDELAVAGPGDDPAEPDGIRRQDDFSSRR 457
|
|
| PRK13108 |
PRK13108 |
prolipoprotein diacylglyceryl transferase; Reviewed |
749-912 |
2.38e-04 |
|
prolipoprotein diacylglyceryl transferase; Reviewed
Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 44.97 E-value: 2.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 749 VAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLA----EDVAAPVVEVTPPPS 824
Cdd:PRK13108 266 IGAVVYIILAPKGREAPGALRGSEYVVDEALEREPAELAAAAVASAASAVGPVGPGEPNQPddvaEAVKAEVAEVTDEVA 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 825 AEPPLAEDV----VAPVIEVTPPPSAEVPLAEDVAAPVVEVtpPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPV 900
Cdd:PRK13108 346 AESVVQVADrdgeSTPAVEETSEADIEREQPGDLAGQAPAA--HQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPI 423
|
170
....*....|....
gi 1712965705 901 VEVTPP--PSVEAP 912
Cdd:PRK13108 424 PDPAKPdeLAVAGP 437
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
50-214 |
2.67e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.21 E-value: 2.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 50 ERAAQAAKDLDKSRHAKEALDlARMQEQSTQLEHQSKIKEY-EAAVEQLKGDQIRIQGEER--RKTLNEETKQHQARAQY 126
Cdd:pfam12128 604 ERLDKAEEALQSAREKQAAAE-EQLVQANGELEKASREETFaRTALKNARLDLRRLFDEKQseKDKKNKALAERKDSANE 682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 127 Q-DKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMR-------------KATIEHEmELRHKNELLRIEAESKAR-- 190
Cdd:pfam12128 683 RlNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQvvegaldaqlallKAAIAAR-RSGAKAELKALETWYKRDla 761
|
170 180 190
....*....|....*....|....*....|....*
gi 1712965705 191 ---------ARVERENADIIR--EQIRLKAAEHRQ 214
Cdd:pfam12128 762 slgvdpdviAKLKREIRTLERkiERIAVRRQEVLR 796
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
633-985 |
2.68e-04 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 45.14 E-value: 2.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 633 QVLEAMPPP--SVEAAAPQAQDVATPIAEVTPPPSVEVEPPLVPDVIAPiveVTPPPSEEAVAAAP--LVQDVIT----- 703
Cdd:pfam03154 165 QILQTQPPVlqAQSGAASPPSPPPPGTTQAATAGPTPSAPSVPPQGSPA---TSQPPNQTQSTAAPhtLIQQTPTlhpqr 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 704 ------PVVEVT--PPPSEEAVAAAAAPLVQDVIAPV---VEVTPP----PSAEAPLAEDVAAPVVEVTPPPSAEAPlae 768
Cdd:pfam03154 242 lpsphpPLQPMTqpPPPSQVSPQPLPQPSLHGQMPPMphsLQTGPShmqhPVPPQPFPLTPQSSQSQVPPGPSPAAP--- 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 769 dVAAPVVEVTPPPSAEAPLAE--------DVAAPVVEVTPPPSAEAPlaeDVAAPVVEVTPPPSAEPPLAEdvvapVIEV 840
Cdd:pfam03154 319 -GQSQQRIHTPPSQSQLQSQQppreqplpPAPLSMPHIKPPPTTPIP---QLPNPQSHKHPPHLSGPSPFQ-----MNSN 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 841 TPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVE--------VTPPPSAEAPlaeDVAAPVVEVTPPPSVEAP 912
Cdd:pfam03154 390 LPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQQLPPPPAQppvltqsqSLPPPAASHP---PTSGLHQVPSQSPFPQHP 466
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1712965705 913 LAEDVAAPVVE-VTPPPSAEVKCTLSDGLDSDNTVKAEPASETEHLAQPAASAETEAKMKKEDKTVSPPKDGTP 985
Cdd:pfam03154 467 FVPGGPPPITPpSGPPTSTSSAMPGIQPPSSASVSSSGPVPAAVSCPLPPVQIKEEALDEAEEPESPPPPPRSP 540
|
|
| PRK11633 |
PRK11633 |
cell division protein DedD; Provisional |
813-921 |
2.79e-04 |
|
cell division protein DedD; Provisional
Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 43.45 E-value: 2.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 813 AAPVVevtPPPSAEPPLaeDVVAPV---IEVTPPPSA-EVPLAEDVAAPVVEvtPPPSAEAPLAEDVAAPVVEVTPPPSA 888
Cdd:PRK11633 40 AIPLV---PKPGDRDEP--DMMPAAtqaLPTQPPEGAaEAVRAGDAAAPSLD--PATVAPPNTPVEPEPAPVEPPKPKPV 112
|
90 100 110
....*....|....*....|....*....|....
gi 1712965705 889 EAPLAEDVAAPVVEVTPPPSVE-APLAEDVAAPV 921
Cdd:PRK11633 113 EKPKPKPKPQQKVEAPPAPKPEpKPVVEEKAAPT 146
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
776-982 |
3.07e-04 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 44.78 E-value: 3.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 776 EVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEdva 855
Cdd:PHA03307 49 ELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPAS--- 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 856 apvvevtPPPSAEAPLAEDvAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPP---SVEAPLAEDVAAPVveVTPPPSAEV 932
Cdd:PHA03307 126 -------PPPSPAPDLSEM-LRPVGSPGPPPAASPPAAGASPAAVASDAASSrqaALPLSSPEETARAP--SSPPAEPPP 195
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1712965705 933 KCTLSDGLDSDNTVKAEPASETEHLA-QPAASAETEAKMKKEDKTVSPPKD 982
Cdd:PHA03307 196 STPPAAASPRPPRRSSPISASASSPApAPGRSAADDAGASSSDSSSSESSG 246
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
742-810 |
3.25e-04 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 44.61 E-value: 3.25e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1712965705 742 EAPLAEDVAAPVVEVTPPPSAEAplAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAE 810
Cdd:COG5373 34 EAELAEAAEAASAPAEPEPEAAA--AATAAAPEAAPAPVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAA 100
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
336-411 |
3.52e-04 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 44.31 E-value: 3.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 336 NGLYRNILMYGPPGTGKTLFAKKLAMHSGMDY----AIMtggdvapmgrDGVTAMHKVFDWANTSR---RGLLLFVDE-- 406
Cdd:PRK13342 33 AGRLSSMILWGPPGTGKTTLARIIAGATDAPFealsAVT----------SGVKDLREVIEEARQRRsagRRTILFIDEih 102
|
90
....*....|.
gi 1712965705 407 ------ADAFL 411
Cdd:PRK13342 103 rfnkaqQDALL 113
|
|
| PRK10819 |
PRK10819 |
transport protein TonB; Provisional |
751-870 |
3.62e-04 |
|
transport protein TonB; Provisional
Pssm-ID: 236768 [Multi-domain] Cd Length: 246 Bit Score: 43.13 E-value: 3.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 751 APVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEpPLA 830
Cdd:PRK10819 33 TSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPK-PVK 111
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1712965705 831 EDVVAPVIEVTPP-PSAEVPLAEDVAAPVVEVTPPPSAEAP 870
Cdd:PRK10819 112 KVEEQPKREVKPVePRPASPFENTAPARPTSSTATAAASKP 152
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
49-214 |
3.86e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.66 E-value: 3.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 49 LERAAQAAKDLDKS-RHAKEALD-----LARMQEQSTQLEHQSKIKEYEAA-----VEQLKG--DQIRIQGEERRKTLNE 115
Cdd:TIGR02168 290 LYALANEISRLEQQkQILRERLAnlerqLEELEAQLEELESKLDELAEELAeleekLEELKEelESLEAELEELEAELEE 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 116 -ETKQHQARAQYQDklARQRYeDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVE 194
Cdd:TIGR02168 370 lESRLEELEEQLET--LRSKV-AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELE 446
|
170 180
....*....|....*....|
gi 1712965705 195 RENADIIREQIRLKAAEHRQ 214
Cdd:TIGR02168 447 EELEELQEELERLEEALEEL 466
|
|
| PKK |
pfam12474 |
Polo kinase kinase; This domain family is found in eukaryotes, and is approximately 140 amino ... |
69-218 |
3.88e-04 |
|
Polo kinase kinase; This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with pfam00069. Polo-like kinase 1 (Plx1) is essential during mitosis for the activation of Cdc25C, for spindle assembly, and for cyclin B degradation. This family is Polo kinase kinase (PKK) which phosphorylates Polo kinase and Polo-like kinase to activate them. PKK is a serine/threonine kinase.
Pssm-ID: 463600 [Multi-domain] Cd Length: 139 Bit Score: 41.39 E-value: 3.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 69 LDLARMQ-EQSTQLEHQSKIKEYEAAVEQLkgdqiriqgEERRKTLNEETKQHQArAQYQDKLARQRYEDQLRQQQILne 147
Cdd:pfam12474 1 HQLQKEQqKDRFEQERQQLKKRYEKELEQL---------ERQQKQQIEKLEQRQT-QELRRLPKRIRAEQKKRLKMFR-- 68
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1712965705 148 ENLrKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVERENADIIREQIRLkAAEHRQTVLE 218
Cdd:pfam12474 69 ESL-KQEKKELKQEVEKLPKFQRKEAKRQRKEELELEQKHEELEFLQAQSEALERELQQL-QNEKRKELAE 137
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
637-974 |
4.42e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 44.21 E-value: 4.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 637 AMPPPSVEAAAPQAQDVATPIAEVTPPPSVEVEPPLVPDVIAPIVEVTPPPSEEAvAAAPLVQDVITPVVEVTPPPSEEA 716
Cdd:PRK07764 418 AAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAA-APEPTAAPAPAPPAAPAPAAAPAA 496
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 717 VAAAAAPL-------VQDVIAPVVEVTPPPS---AEAPLAEDVAAP------VVEVTPPPSAEAPLAEDVAAPVVEV--- 777
Cdd:PRK07764 497 PAAPAAPAgaddaatLRERWPEILAAVPKRSrktWAILLPEATVLGvrgdtlVLGFSTGGLARRFASPGNAEVLVTAlae 576
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 778 -------------TPPPSA--EAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTP 842
Cdd:PRK07764 577 elggdwqveavvgPAPGAAggEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKH 656
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 843 PPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVE-VTPPPSVEAPLAEDVAAPV 921
Cdd:PRK07764 657 VAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDpAAQPPQAAQGASAPSPAAD 736
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1712965705 922 VEVTPPPSAEVKCTLSDGLDSDNTVKAEPASETEHLAQPAASAETEAKMKKED 974
Cdd:PRK07764 737 DPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDD 789
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
752-928 |
4.43e-04 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 44.21 E-value: 4.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 752 PVVEVTPPPsaeAPLAEDVAAPVVEVTPPPSAEAPLAEDVA------APVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSA 825
Cdd:PRK12727 63 PATAAAPAP---APQAPTKPAAPVHAPLKLSANANMSQRQRvasaaeDMIAAMALRQPVSVPRQAPAAAPVRAASIPSPA 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 826 EPPLAedVVAPVIEVTPPPSAEVPLAEDV-AAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDV-------- 896
Cdd:PRK12727 140 AQALA--HAAAVRTAPRQEHALSAVPEQLfADFLTTAPVPRAPVQAPVVAAPAPVPAIAAALAAHAAYAQDDdeqldddg 217
|
170 180 190
....*....|....*....|....*....|....*....
gi 1712965705 897 ----AAPVVEVTP---PPSVEAPLAEDVAAPVVEVTPPP 928
Cdd:PRK12727 218 fdldDALPQILPPaalPPIVVAPAAPAALAAVAAAAPAP 256
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
576-938 |
4.59e-04 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 43.80 E-value: 4.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 576 TLTPPKPEGTSGGKMGFVlPLSEAPQAKDVVAPVVEVTPPPPPSAEVAAPQiqdviTQVLEAmpPPSVEAAAPQAQDVAT 655
Cdd:pfam17823 97 LSEPATREGAADGAASRA-LAAAASSSPSSAAQSLPAAIAALPSEAFSAPR-----AAACRA--NASAAPRAAIAAASAP 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 656 PIAEVTPPPSVEVEpplvpdviapivevTPPPSEEAVAAAPLVQDVITPVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEV 735
Cdd:pfam17823 169 HAASPAPRTAASST--------------TAASSTTAASSAPTTAASSAPATLTPARGISTAATATGHPAAGTALAAVGNS 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 736 TPPP-SAEAPLAEDVAAPVVEVTPPPS--AEAPLAEDVAAPVVEvTPPPSAEAPLAEDVAAPVveVTPPPSAEAPLAE-D 811
Cdd:pfam17823 235 SPAAgTVTAAVGTVTPAALATLAAAAGtvASAAGTINMGDPHAR-RLSPAKHMPSDTMARNPA--APMGAQAQGPIIQvS 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 812 VAAPVVEVTPPPSAEPPlaedvvAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAP 891
Cdd:pfam17823 312 TDQPVHNTAGEPTPSPS------NTTLEPNTPKSVASTNLAVVTTTKAQAKEPSASPVPVLHTSMIPEVEATSPTTQPSP 385
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 1712965705 892 L--AEDVAAPVVEVTPPP-SVEAPLAEDVAAPvvevTPPPSAEVKCTLSD 938
Cdd:pfam17823 386 LlpTQGAAGPGILLAPEQvATEATAGTASAGP----TPRSSGDPKTLAMA 431
|
|
| RecA-like_NSF-SEC18_r1-like |
cd19504 |
first of two ATPase domains of NSF and SEC18, and similar ATPase domains; ... |
340-457 |
4.60e-04 |
|
first of two ATPase domains of NSF and SEC18, and similar ATPase domains; N-ethylmaleimide-sensitive factor (NSF) and Saccharomyces cerevisiae Vesicular-fusion protein Sec18, key factors for eukaryotic trafficking, are ATPases and SNARE disassembly chaperones. NSF/Sec18 activate or prime SNAREs, the terminal catalysts of membrane fusion. Sec18/NSF associates with SNARE complexes through binding Sec17/alpha-SNAP. Sec18 has an N-terminal cap domain and two nucleotide-binding domains (D1 and D2) which form the two rings of the hexameric complex. The hydrolysis of ATP by D1 generates most of the energy necessary to disassemble inactive SNARE bundles, while the D2 ring binds ATP to stabilize the homohexamer. This subfamily includes the first (D1) ATPase domain of NSF/Sec18, and belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410912 [Multi-domain] Cd Length: 177 Bit Score: 42.09 E-value: 4.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 340 RNILMYGPPGTGKTLFAKKLA-MHSGMDYAIMTGGDVAP--MGrDGVTAMHKVFDWANTSRRGL-------LLFVDEADA 409
Cdd:cd19504 36 KGILLYGPPGTGKTLMARQIGkMLNAREPKIVNGPEILNkyVG-ESEANIRKLFADAEEEQRRLgansglhIIIFDEIDA 114
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1712965705 410 FLRKRSTEKISEDLRATL-NAFLYRTG--EQSNKFMLVLASNQPEQFDWAI 457
Cdd:cd19504 115 ICKQRGSMAGSTGVHDTVvNQLLSKIDgvEQLNNILVIGMTNRKDLIDEAL 165
|
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
747-890 |
4.60e-04 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 43.60 E-value: 4.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 747 EDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAE 826
Cdd:NF040712 190 PDFGRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGPGAAPAAE 269
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1712965705 827 PPlaeDVVAPVIEVTPPPSAEVPLAEDVAAPVvevtppPSAEAPLAEDVAAPVVEVTPPPSAEA 890
Cdd:NF040712 270 PD---EATRDAGEPPAPGAAETPEAAEPPAPA------PAAPAAPAAPEAEEPARPEPPPAPKP 324
|
|
| MAP7 |
pfam05672 |
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is ... |
107-214 |
4.71e-04 |
|
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent.
Pssm-ID: 461709 [Multi-domain] Cd Length: 153 Bit Score: 41.56 E-value: 4.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 107 EERRKTLNEETKQHQARAQYQDKLARQRYEDQLRQ---QQILNEENLRKQEESVQKQEAMRKATIE---HEMELRHKNEL 180
Cdd:pfam05672 17 AEKRRQAREQREREEQERLEKEEEERLRKEELRRRaeeERARREEEARRLEEERRREEEERQRKAEeeaEEREQREQEEQ 96
|
90 100 110
....*....|....*....|....*....|....*..
gi 1712965705 181 LRIEA---ESKARARVERENADIIREQIRLKAAEHRQ 214
Cdd:pfam05672 97 ERLQKqkeEAEAKAREEAERQRQEREKIMQQEEQERL 133
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
685-954 |
4.73e-04 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 44.39 E-value: 4.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 685 PPPSEEAVAAAPLVQDVITPVVEVT--PPPSEEAVAAAAAPLVQDVIAPVV-EVTPPPSAEAPLAedvAAPVVEVTPPPS 761
Cdd:PHA03307 44 VSDSAELAAVTVVAGAAACDRFEPPtgPPPGPGTEAPANESRSTPTWSLSTlAPASPAREGSPTP---PGPSSPDPPPPT 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 762 AE--------APLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLA---EDVAAPVVE--VTPPPSAEPP 828
Cdd:PHA03307 121 PPpaspppspAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLsspEETARAPSSppAEPPPSTPPA 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 829 LAED---VVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAED---------VAAPVVEVTPPPSAEAPLAEDV 896
Cdd:PHA03307 201 AASPrppRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWgpenecplpRPAPITLPTRIWEASGWNGPSS 280
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1712965705 897 AAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPPSAEVKCTLSDGLDSDNTVKAEPASET 954
Cdd:PHA03307 281 RPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRG 338
|
|
| RecA-like_PEX6_r2 |
cd19527 |
second of two ATPase domains of Peroxisomal biogenesis factor 6 (PEX6); PEX6(also known as ... |
342-457 |
5.30e-04 |
|
second of two ATPase domains of Peroxisomal biogenesis factor 6 (PEX6); PEX6(also known as Peroxin61)/PEX1 is a protein unfoldase; PEX6 and PEX1 form a heterohexameric Type-2 AAA-ATPase complex and are essential for peroxisome biogenesis as they are required for the import of folded proteins into the peroxisomal matrix. This subfamily represents the second ATPase domain of PEX6. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410935 [Multi-domain] Cd Length: 160 Bit Score: 41.73 E-value: 5.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 342 ILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAPMGRDGVTA-MHKVFDWANTSRRGLLLFvDEADAFLRKRST---- 416
Cdd:cd19527 29 ILLYGPPGTGKTLLAKAIATECSLNFLSVKGPELINMYIGESEAnVREVFQKARDAKPCVIFF-DELDSLAPSRGNsgds 107
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1712965705 417 ----EKISEDLRATLNAfLYRTGEQsnkFMLVLASNQPEQFDWAI 457
Cdd:cd19527 108 ggvmDRVVSQLLAELDG-MSSSGQD---VFVIGATNRPDLLDPAL 148
|
|
| PLN03209 |
PLN03209 |
translocon at the inner envelope of chloroplast subunit 62; Provisional |
620-887 |
5.33e-04 |
|
translocon at the inner envelope of chloroplast subunit 62; Provisional
Pssm-ID: 178748 [Multi-domain] Cd Length: 576 Bit Score: 43.76 E-value: 5.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 620 AEVAAPQIQDVITQVLEAMPP-PSVEAAAPQAQDVAT-PIAEVTpppsvevepplVPDVIAPIVEVTPPPSEEAVAAAPL 697
Cdd:PLN03209 332 ESDAADGPKPVPTKPVTPEAPsPPIEEEPPQPKAVVPrPLSPYT-----------AYEDLKPPTSPIPTPPSSSPASSKS 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 698 VQDVITPvVEVTPPPSEEAVAAaaaplvqdviAPVVEVTPPPSAEA-PLAEDVAAPVVEvtpPPSAEAPLAEDVAAPVVE 776
Cdd:PLN03209 401 VDAVAKP-AEPDVVPSPGSASN----------VPEVEPAQVEAKKTrPLSPYARYEDLK---PPTSPSPTAPTGVSPSVS 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 777 VTPppsaeaplaedvAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPP---SAEPPLAEDVVAPVIEVTPPPSAEVPLAED 853
Cdd:PLN03209 467 STS------------SVPAVPDTAPATAATDAAAPPPANMRPLSPYAvydDLKPPTSPSPAAPVGKVAPSSTNEVVKVGN 534
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1712965705 854 VAAPV--------VEVTPPPSAEAPLAEDVAAPvveVTPPPS 887
Cdd:PLN03209 535 SAPPTaladeqhhAQPKPRPLSPYTMYEDLKPP---TSPTPS 573
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
40-200 |
5.50e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.16 E-value: 5.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 40 KWSNFDPTGLERAAQAAKDLDKSRHAKEALDLARM--QEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERRKTLNEET 117
Cdd:COG1196 614 RYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREvtLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEEL 693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 118 KQHQARAQYQDKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVEREN 197
Cdd:COG1196 694 ELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLE 773
|
...
gi 1712965705 198 ADI 200
Cdd:COG1196 774 REI 776
|
|
| PTZ00361 |
PTZ00361 |
26 proteosome regulatory subunit 4-like protein; Provisional |
340-475 |
6.06e-04 |
|
26 proteosome regulatory subunit 4-like protein; Provisional
Pssm-ID: 185575 [Multi-domain] Cd Length: 438 Bit Score: 43.61 E-value: 6.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 340 RNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGD-VAPMGRDG---VTAMHKVFDWANTSrrglLLFVDEADAFLRKR- 414
Cdd:PTZ00361 218 KGVILYGPPGTGKTLLAKAVANETSATFLRVVGSElIQKYLGDGpklVRELFRVAEENAPS----IVFIDEIDAIGTKRy 293
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965705 415 -STEKISEDLRATLNAFLYRTG--EQSNKFMLVLASNQPEQFDWAI--NDRIDEIVNFalPGPDER 475
Cdd:PTZ00361 294 dATSGGEKEIQRTMLELLNQLDgfDSRGDVKVIMATNRIESLDPALirPGRIDRKIEF--PNPDEK 357
|
|
| DUF3729 |
pfam12526 |
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins ... |
823-909 |
6.28e-04 |
|
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important.
Pssm-ID: 372164 [Multi-domain] Cd Length: 115 Bit Score: 40.45 E-value: 6.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 823 PSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPvvevtPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlaedvAAPVVE 902
Cdd:pfam12526 29 FSPPESAHPDPPPPVGDPRPPVVDTPPPVSAVWVL-----PPPSEPAAPEPDLVPPVTGPAGPPSPLAP-----PAPAQK 98
|
....*..
gi 1712965705 903 VTPPPSV 909
Cdd:pfam12526 99 PPLPPPR 105
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
784-857 |
6.47e-04 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 43.84 E-value: 6.47e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1712965705 784 EAPLAEDVAAPVVEVTPPPSAEAplAEDVAAPVVEVTPPPSAEPPLAEDVVAPvievTPPPSAEVPLAEDVAAP 857
Cdd:COG5373 34 EAELAEAAEAASAPAEPEPEAAA--AATAAAPEAAPAPVPEAPAAPPAAAEAP----APAAAAPPAEAEPAAAP 101
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
56-194 |
6.71e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.57 E-value: 6.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 56 AKDLDKSRhaKEALDLARMQEQSTQLEHQSKIKEYEaaVEQLKGDQIRIQgEERRKTLNEETKQHQaRAQYQDKLARQRY 135
Cdd:pfam17380 445 AREMERVR--LEEQERQQQVERLRQQEEERKRKKLE--LEKEKRDRKRAE-EQRRKILEKELEERK-QAMIEEERKRKLL 518
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1712965705 136 EDQL--RQQQILNEENLRKQEESVQK----------QEAMRKATIEHEM--ELRHKNELLRIEAES-KARARVE 194
Cdd:pfam17380 519 EKEMeeRQKAIYEEERRREAEEERRKqqemeerrriQEQMRKATEERSRleAMEREREMMRQIVESeKARAEYE 592
|
|
| PTZ00436 |
PTZ00436 |
60S ribosomal protein L19-like protein; Provisional |
645-806 |
7.62e-04 |
|
60S ribosomal protein L19-like protein; Provisional
Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 43.01 E-value: 7.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 645 AAAPQAQDVATPIAEVTPPPSVEVEPPLVPDVIAPIVEVTPPpseeAVAAAPLVQDVITPVVEVTPPP-SEEAVAAAAAP 723
Cdd:PTZ00436 195 AAAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPP----AKAAAAPAKAAAAPAKAAAPPAkAAAPPAKAAAP 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 724 LVQDVIAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPS 803
Cdd:PTZ00436 271 PAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAAPVG 350
|
...
gi 1712965705 804 AEA 806
Cdd:PTZ00436 351 KKA 353
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
566-760 |
8.96e-04 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 43.49 E-value: 8.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 566 LHAEEEAQAKTLTPPKPEGTSGGKMGFVLPLSEAPQAKDVVAPVVEVTPPPPPSAEVAAPQIQDVITQVLEAMPPPSVEA 645
Cdd:PRK10811 855 VEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITES 934
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 646 AAPQAQDVATPIAEVTPppsvevepplVPDVIAPIVEVTPPPSEEAVAAAPLVQDVITPVVEVTPPPSEEavaaaaaPLV 725
Cdd:PRK10811 935 DVAVAQEVAEHAEPVVE----------PQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETV-------TAV 997
|
170 180 190
....*....|....*....|....*....|....*...
gi 1712965705 726 QDVIAPVVEVTPPPS---AEAPLAEdvaAPVVEVTPPP 760
Cdd:PRK10811 998 EPEVAPAQVPEATVEhnhATAPMTR---APAPEYVPEA 1032
|
|
| PLN03209 |
PLN03209 |
translocon at the inner envelope of chloroplast subunit 62; Provisional |
774-979 |
9.22e-04 |
|
translocon at the inner envelope of chloroplast subunit 62; Provisional
Pssm-ID: 178748 [Multi-domain] Cd Length: 576 Bit Score: 42.99 E-value: 9.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 774 VVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSA-----EPPLAEDVVapvievtPPPSAEV 848
Cdd:PLN03209 302 VVEVIAETTAPLTPMEELLAKIPSQRVPPKESDAADGPKPVPTKPVTPEAPSppieeEPPQPKAVV-------PRPLSPY 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 849 PLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVaaPVVEVTPPPS-VEAPLA-----EDVAAPvv 922
Cdd:PLN03209 375 TAYEDLKPPTSPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNV--PEVEPAQVEAkKTRPLSpyaryEDLKPP-- 450
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1712965705 923 eVTPPPSAEVKCTLSdgLDSDNTVKAEPASetehlAQPAASAETEAKMKKEDKTVSP 979
Cdd:PLN03209 451 -TSPSPTAPTGVSPS--VSSTSSVPAVPDT-----APATAATDAAAPPPANMRPLSP 499
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
71-214 |
9.63e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.00 E-value: 9.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 71 LARMQEQSTQ----LEHQSKIKEYEAAVEQLKGDQIRIQGEERRKTLNEETKQHQARAQYQDKLARQRyeDQLRQQQiln 146
Cdd:COG1196 202 LEPLERQAEKaeryRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAEL--EELRLEL--- 276
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1712965705 147 eENLRKQEESVQKQEAMRKATIEhEMELRHKNELLRIEAESKARARVERENADIIREQIRLKAAEHRQ 214
Cdd:COG1196 277 -EELELELEEAQAEEYELLAELA-RLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEEL 342
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
44-210 |
9.64e-04 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 42.94 E-value: 9.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 44 FDPTGLERAAQAAKDLDKSRHAKEALdlarMQEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERRKTLNEETKQHQAR 123
Cdd:COG2268 186 LDALGRRKIAEIIRDARIAEAEAERE----TEIAIAQANREAEEAELEQEREIETARIAEAEAELAKKKAEERREAETAR 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 124 AQyQDKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRK-ATIEHEMELRHKNELLRIEAESKARARVERENADIIR 202
Cdd:COG2268 262 AE-AEAAYEIAEANAEREVQRQLEIAEREREIELQEKEAEREeAELEADVRKPAEAEKQAAEAEAEAEAEAIRAKGLAEA 340
|
....*...
gi 1712965705 203 EQIRLKAA 210
Cdd:COG2268 341 EGKRALAE 348
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
639-815 |
9.74e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 43.05 E-value: 9.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 639 PPPSVEAAAPQAQDVATPIAEVTPPPSVEVEPPLVPDVIAPIVEVTPPPSEEAVAAAPLVQDVITPVVEVTPPPSEEAVA 718
Cdd:PRK07764 625 AAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPA 704
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 719 AAAAPLVQDVIAPvveVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPvvevtPPPSAEAPLAEDVAAPVVEV 798
Cdd:PRK07764 705 PAATPPAGQADDP---AAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPA-----QPPPPPAPAPAAAPAAAPPP 776
|
170
....*....|....*..
gi 1712965705 799 TPPPSAEAPLAEDVAAP 815
Cdd:PRK07764 777 SPPSEEEEMAEDDAPSM 793
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
619-964 |
1.02e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 43.05 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 619 SAEVAAPQIQDVITQVLEAMPPPSVEAAAPQAQDVATPIAEVTPPPSVEVEPPLVPdviAPIVEVTPPPSEEAVAAAPLV 698
Cdd:PRK07764 411 APAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQP---APAPAAAPEPTAAPAPAPPAA 487
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 699 QDviTPVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPS---AEAPLAEDVAAP------VVEVTPPPSAEApLAED 769
Cdd:PRK07764 488 PA--PAAAPAAPAAPAAPAGADDAATLRERWPEILAAVPKRSrktWAILLPEATVLGvrgdtlVLGFSTGGLARR-FASP 564
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 770 VAAPV--------------VEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPplAEDVVA 835
Cdd:PRK07764 565 GNAEVlvtalaeelggdwqVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAP--AEASAA 642
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 836 PVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEvtPPPSVEAPLAE 915
Cdd:PRK07764 643 PAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATP--PAGQADDPAAQ 720
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1712965705 916 DVAAPVVEVTPPPSAEVKCTLSDGLDSDNTVKAEPASETEHLAQPAASA 964
Cdd:PRK07764 721 PPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAA 769
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
730-835 |
1.02e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 43.05 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 730 APVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLA 809
Cdd:PRK07764 405 APAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAP 484
|
90 100
....*....|....*....|....*.
gi 1712965705 810 EDVAAPVVEVTPPPSAEPPLAEDVVA 835
Cdd:PRK07764 485 PAAPAPAAAPAAPAAPAAPAGADDAA 510
|
|
| DUF4659 |
pfam15558 |
Domain of unknown function (DUF4659); This family of proteins is found in eukaryotes. Proteins ... |
68-213 |
1.08e-03 |
|
Domain of unknown function (DUF4659); This family of proteins is found in eukaryotes. Proteins in this family are typically between 427 and 674 amino acids in length. There are two completely conserved residues (D and I) that may be functionally important.
Pssm-ID: 464768 [Multi-domain] Cd Length: 374 Bit Score: 42.33 E-value: 1.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 68 ALDLARMQEQSTQLEHQskikeYEAAV---EQLKGDQIRIQGEERRKTLNEETKQHQARAQYQDKLARQRYE-----DQL 139
Cdd:pfam15558 11 ALMLARHKEEQRMRELQ-----QQAALaweELRRRDQKRQETLERERRLLLQQSQEQWQAEKEQRKARLGREerrraDRR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 140 RQQQILNE----------ENLRK----------------QEESVQKQEAMRKATIEHEMELRHKNELL----RIEAESKA 189
Cdd:pfam15558 86 EKQVIEKEsrwreqaedqENQRQeklerarqeaeqrkqcQEQRLKEKEEELQALREQNSLQLQERLEEachkRQLKEREE 165
|
170 180
....*....|....*....|....*
gi 1712965705 190 RARVEREN-ADIIREQIRLKAAEHR 213
Cdd:pfam15558 166 QKKVQENNlSELLNHQARKVLVDCQ 190
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
738-984 |
1.12e-03 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 42.64 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 738 PPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPvveVTPPPSAEAPLAEDvAAPVVEVTPPPSAEAPLAEDVAAPVV 817
Cdd:pfam17823 123 PSSAAQSLPAAIAALPSEAFSAPRAAACRANASAAP---RAAIAAASAPHAAS-PAPRTAASSTTAASSTTAASSAPTTA 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 818 EVTPPPSAEP-------------PLAEDVVAPVIEVTPPP---SAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVE 881
Cdd:pfam17823 199 ASSAPATLTPargistaatatghPAAGTALAAVGNSSPAAgtvTAAVGTVTPAALATLAAAAGTVASAAGTINMGDPHAR 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 882 vTPPPSAEAP---LAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPPSAEV------KCTLSDGLDSDNTVKA---E 949
Cdd:pfam17823 279 -RLSPAKHMPsdtMARNPAAPMGAQAQGPIIQVSTDQPVHNTAGEPTPSPSNTTlepntpKSVASTNLAVVTTTKAqakE 357
|
250 260 270
....*....|....*....|....*....|....*
gi 1712965705 950 PASETEHLAQPAASAETEAKMKKEDKTVSPPKDGT 984
Cdd:pfam17823 358 PSASPVPVLHTSMIPEVEATSPTTQPSPLLPTQGA 392
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
75-215 |
1.20e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.74 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 75 QEQSTQLEHQSKIKEYEAAVEQLKGD--QIRIQGEERRKTLNE-ETKQHQARAQYQDKLARQRYEDQLRQQQILNEENLR 151
Cdd:TIGR02168 667 KTNSSILERRREIEELEEKIEELEEKiaELEKALAELRKELEElEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE 746
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1712965705 152 KQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESK-----ARARVERENADIIREQIRLKAAEHRQT 215
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEieeleAQIEQLKEELKALREALDELRAELTLL 815
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
641-789 |
1.23e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 42.78 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 641 PSVEAAAPQAQDVATPIAEVTPPPSVEVepplVPDVIAPIVEVTPPPSEEAVAAAPLVQdvitpvveVTPPPSEEAVAAA 720
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAP----VAQAAAAPAPAAAPAAAASAPAAPPAA--------APPAPVAAPAAAA 433
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1712965705 721 AAPLVQDVIAPVvevTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVvevtPPPSAEAPLAE 789
Cdd:PRK14951 434 PAAAPAAAPAAV---ALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPA----AARLTPTEEGD 495
|
|
| DUF3729 |
pfam12526 |
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins ... |
739-825 |
1.30e-03 |
|
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important.
Pssm-ID: 372164 [Multi-domain] Cd Length: 115 Bit Score: 39.68 E-value: 1.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 739 PSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPvvevtPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlaedvAAPVVE 818
Cdd:pfam12526 29 FSPPESAHPDPPPPVGDPRPPVVDTPPPVSAVWVL-----PPPSEPAAPEPDLVPPVTGPAGPPSPLAP-----PAPAQK 98
|
....*..
gi 1712965705 819 VTPPPSA 825
Cdd:pfam12526 99 PPLPPPR 105
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
680-797 |
1.31e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 42.49 E-value: 1.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 680 IVEVTPPPSEEAVAAAPlvQDVITPVVEVTPPPSEEAVAAAAAPLVQdviAPVVEVTPPPSAEAPlaEDVAAPVVEVTPP 759
Cdd:PRK14950 355 VIEALLVPVPAPQPAKP--TAAAPSPVRPTPAPSTRPKAAAAANIPP---KEPVRETATPPPVPP--RPVAPPVPHTPES 427
|
90 100 110
....*....|....*....|....*....|....*...
gi 1712965705 760 PSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVE 797
Cdd:PRK14950 428 APKLTRAAIPVDEKPKYTPPAPPKEEEKALIADGDVLE 465
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
826-939 |
1.33e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 42.49 E-value: 1.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 826 EPPLAEDVVAPVIEVTP-PPSAEVPlaeDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSaeaPLAEDVAAPVVEVT 904
Cdd:PRK14950 352 ELAVIEALLVPVPAPQPaKPTAAAP---SPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPP---VPPRPVAPPVPHTP 425
|
90 100 110
....*....|....*....|....*....|....*.
gi 1712965705 905 PPPSVEAPLAEDV-AAPVVEVTPPPSAEVKCTLSDG 939
Cdd:PRK14950 426 ESAPKLTRAAIPVdEKPKYTPPAPPKEEEKALIADG 461
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
56-194 |
1.44e-03 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 42.10 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 56 AKDLDKSRHAKEALDLARMQEQstQLEHQSKIKEYEAavEQLKGDQIRIQGEERRKTLNEETKQHQARAQYQDKLARQRY 135
Cdd:PRK09510 74 AKRAEEQRKKKEQQQAEELQQK--QAAEQERLKQLEK--ERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKA 149
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1712965705 136 EDQLRQ-----QQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNEL-LRIEAESKARARVE 194
Cdd:PRK09510 150 EAEAKRaaaaaKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAkKKAEAEAKKKAAAE 214
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
50-210 |
1.46e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 1.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 50 ERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKGDQI-RIQGEERRKTLNEETKQhQARAQYQD 128
Cdd:COG4913 288 RRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLeQLEREIERLERELEERE-RRRARLEA 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 129 KLA---------RQRYEDQLRQ-QQILneENLRKQEESVQKQEAMRKATIEhemelRHKNELLRIEAEskaRARVERENA 198
Cdd:COG4913 367 LLAalglplpasAEEFAALRAEaAALL--EALEEELEALEEALAEAEAALR-----DLRRELRELEAE---IASLERRKS 436
|
170
....*....|..
gi 1712965705 199 DIIREQIRLKAA 210
Cdd:COG4913 437 NIPARLLALRDA 448
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
805-873 |
1.61e-03 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 42.29 E-value: 1.61e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1712965705 805 EAPLAEDVAAPVVEVTPPPSAEPplAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAE 873
Cdd:COG5373 34 EAELAEAAEAASAPAEPEPEAAA--AATAAAPEAAPAPVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAA 100
|
|
| PTZ00266 |
PTZ00266 |
NIMA-related protein kinase; Provisional |
107-313 |
1.67e-03 |
|
NIMA-related protein kinase; Provisional
Pssm-ID: 173502 [Multi-domain] Cd Length: 1021 Bit Score: 42.42 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 107 EERRKTLNEETKQHQARAQY-----QDKLARQRYEDQLRQQQILNEENLRKQEesVQKQEAMRKATIEHEMELRHKNELL 181
Cdd:PTZ00266 407 DDRKYPQDGATHCHAVNGHYggrvdKDHAERARIEKENAHRKALEMKILEKKR--IERLEREERERLERERMERIERERL 484
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 182 ---RIEAESKARARVERENADIIR-------EQIRLKAAEHRQTVLESIK---TAGAVFGEGfrafvsdwdkvtATVAGL 248
Cdd:PTZ00266 485 ereRLERERLERDRLERDRLDRLErervdrlERDRLEKARRNSYFLKGMEnglSAGGGPGDG------------PGVGAG 552
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965705 249 TLLAVGVYSARNATGV-AGRYIEARLGKPSLVRETSRFTVGEAIKHPVKtvKRLKSKPQDALEGVV 313
Cdd:PTZ00266 553 VGAGVGTSDGRNHSGVrSGIHCSIQSSARGGVHDSVRSGVHDSVRGGVH--DSMRSGVHDSLRGGV 616
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
635-930 |
1.68e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 42.28 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 635 LEAMPPPSVEAAAPQAQdvATPIAEVTPPPSVEVepplvPDVIAPIVEVTPPPSEEAVAAAPLVQDviTPVVEVTPPPSE 714
Cdd:PRK07764 381 LERRLGVAGGAGAPAAA--APSAAAAAPAAAPAP-----AAAAPAAAAAPAPAAAPQPAPAPAPAP--APPSPAGNAPAG 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 715 EAVAAAAAPLVQDVIAPVVEVTPPPSA-EAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTP-------------- 779
Cdd:PRK07764 452 GAPSPPPAAAPSAQPAPAPAAAPEPTAaPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRERWPeilaavpkrsrktw 531
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 780 -----------------------PPSAEApLAEDVAAPV--------------VEVTPPPSAEAPLAEDVAAPVVEVTPP 822
Cdd:PRK07764 532 aillpeatvlgvrgdtlvlgfstGGLARR-FASPGNAEVlvtalaeelggdwqVEAVVGPAPGAAGGEGPPAPASSGPPE 610
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 823 PSAEPPLAEDVVAPviEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVE 902
Cdd:PRK07764 611 EAARPAAPAAPAAP--AAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPA 688
|
330 340
....*....|....*....|....*...
gi 1712965705 903 VTPPPSVEAPLAEDVAAPVVEVTPPPSA 930
Cdd:PRK07764 689 APAAPAGAAPAQPAPAPAATPPAGQADD 716
|
|
| DUF3729 |
pfam12526 |
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins ... |
781-867 |
1.77e-03 |
|
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important.
Pssm-ID: 372164 [Multi-domain] Cd Length: 115 Bit Score: 39.29 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 781 PSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPvvevtPPPSAEPPLAEDVVAPVIEVTPPPSAEVPlaedvAAPVVE 860
Cdd:pfam12526 29 FSPPESAHPDPPPPVGDPRPPVVDTPPPVSAVWVL-----PPPSEPAAPEPDLVPPVTGPAGPPSPLAP-----PAPAQK 98
|
....*..
gi 1712965705 861 VTPPPSA 867
Cdd:pfam12526 99 PPLPPPR 105
|
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
703-827 |
1.79e-03 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 41.68 E-value: 1.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 703 TPVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPS 782
Cdd:NF040712 200 ATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGPGAAPAAEPDEATRDAGE 279
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1712965705 783 AEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEP 827
Cdd:NF040712 280 PPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPKP 324
|
|
| GBP_C |
pfam02841 |
Guanylate-binding protein, C-terminal domain; Transcription of the anti-viral ... |
79-177 |
1.83e-03 |
|
Guanylate-binding protein, C-terminal domain; Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP.
Pssm-ID: 460721 [Multi-domain] Cd Length: 297 Bit Score: 41.50 E-value: 1.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 79 TQLEHQSKIKEYEAAVEQLKGDQIRIQgeerRKTLNEETKQHQARAQYQDKlarqRYEDQLRQ--------QQILNEENL 150
Cdd:pfam02841 193 LQTDQALTAKEKAIEAERAKAEAAEAE----QELLREKQKEEEQMMEAQER----SYQEHVKQliekmeaeREQLLAEQE 264
|
90 100
....*....|....*....|....*..
gi 1712965705 151 RKQEESVQKQEAMRKATIEHEMELRHK 177
Cdd:pfam02841 265 RMLEHKLQEQEELLKEGFKTEAESLQK 291
|
|
| FliJ |
COG2882 |
Flagellar biosynthesis chaperone FliJ [Cell motility]; |
69-185 |
1.85e-03 |
|
Flagellar biosynthesis chaperone FliJ [Cell motility];
Pssm-ID: 442129 [Multi-domain] Cd Length: 142 Bit Score: 39.50 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 69 LDLARMQEQSTQLEHQSKIKEYEAAVEQLkgDQIRIQGEERRKTLNEETKQHQARAQYQDklaRQRYEDQLRQ---QQIL 145
Cdd:COG2882 11 LDLAEKEEDEAARELGQAQQALEQAEEQL--EQLEQYREEYEQRLQQKLQQGLSAAQLRN---YQQFIARLDEaieQQQQ 85
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1712965705 146 NEENLRKQEESVQK--QEAMRK-ATIEHEMElRHKNELLRIEA 185
Cdd:COG2882 86 QVAQAEQQVEQARQawLEARQErKALEKLKE-RRREEERQEEN 127
|
|
| HflB |
COG0465 |
ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]; |
342-360 |
1.99e-03 |
|
ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440233 [Multi-domain] Cd Length: 583 Bit Score: 41.95 E-value: 1.99e-03
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
855-974 |
2.13e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 41.77 E-value: 2.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 855 AAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPlAEDVAAPVVEvtPPPSVEAPLAEDVAAPVVEVTPPPSAEVKc 934
Cdd:PRK07994 364 PLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVP-PPPASAPQQA--PAVPLPETTSQLLAARQQLQRAQGATKAK- 439
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1712965705 935 tLSDGLDSDNTVKAEPASETEHLAQPAASAETEAKMKKED 974
Cdd:PRK07994 440 -KSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEA 478
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
834-981 |
2.17e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 41.77 E-value: 2.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 834 VAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPlAEDVAAPVVEvtPPPSAEAPLAEDVAAPVVEVTPPPSVEAPL 913
Cdd:PRK07994 364 PLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVP-PPPASAPQQA--PAVPLPETTSQLLAARQQLQRAQGATKAKK 440
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1712965705 914 AEDVAAPVVEVTPPPSAEVKCTLSDGLDSDNTVKAEPASETEHLAQPAASAETEAKMKKEDKTVSPPK 981
Cdd:PRK07994 441 SEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEK 508
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
619-828 |
2.29e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 42.00 E-value: 2.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 619 SAEVAAPQIQDVITQVLEAMPPPSVEAAAPQAQDVATPIAEVTPPPSVEVEPPLVPDVIAPIVEVTPPPSEEAVAAAPLV 698
Cdd:PRK08691 374 NTELQSPSAQTAEKETAAKKPQPRPEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWEDAPDEAQTAAGTAQTS 453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 699 QDVITPVVEV-TPPPSEEAVAAAAAplvQDVIAPVVEVtppPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEV 777
Cdd:PRK08691 454 AKSIQTASEAeTPPENQVSKNKAAD---NETDAPLSEV---PSENPIQATPNDEAVETETFAHEAPAEPFYGYGFPDNDC 527
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1712965705 778 TPPPSAEAPlaedvAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPP 828
Cdd:PRK08691 528 PPEDGAEIP-----PPDWEHAAPADTAGGGADEEAEAGGIGGNNTPSAPPP 573
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
850-915 |
2.44e-03 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 41.91 E-value: 2.44e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965705 850 LAEDVAAPVVEVTPPPSAEAplAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAE 915
Cdd:COG5373 37 LAEAAEAASAPAEPEPEAAA--AATAAAPEAAPAPVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAA 100
|
|
| CCDC66 |
pfam15236 |
Coiled-coil domain-containing protein 66; This protein family, named Coiled-coil ... |
73-188 |
2.65e-03 |
|
Coiled-coil domain-containing protein 66; This protein family, named Coiled-coil domain-containing protein 66 (CCDC) refers to a protein domain found in eukaryotes, and is approximately 160 amino acids in length. CCDC66 protein is detected mainly in the inner segments of photoreceptors in many vertebrates including mice and humans. It has been found in dogs, that a mutation in the CCDC66 gene causes generalized progressive retinal atrophy (gPRA). This shows that the protein encoded for by this gene is vital for healthy vision and guards against photoreceptor cell degeneration. The structure of CCDC66 proteins includes a heptad repeat pattern which contains at least one coiled-coil domain. There are at least two or more alpha-helices which form a cable-like structure.
Pssm-ID: 434558 [Multi-domain] Cd Length: 154 Bit Score: 39.39 E-value: 2.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 73 RMQEQSTQLEHQSKIKEyeaaveqlkgdqiriQGEERRKTLNEETKQHQARAQYQD-KLARQ------RYEDQLRQQQIL 145
Cdd:pfam15236 47 RERKRQKALEHQNAIKK---------------QLEEKERQKKLEEERRRQEEQEEEeRLRREreeeqkQFEEERRKQKEK 111
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1712965705 146 NEENLRKQEESVQkqeAMRKAtieHEMELRHKNELLRIEAESK 188
Cdd:pfam15236 112 EEAMTRKTQALLQ---AMQKA---QELAQRLKQEQRIRELAEK 148
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
50-222 |
2.99e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 2.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 50 ERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSKIKEYEAAVEQLKG------DQIRIQGEERRKTLNEETKQHQAR 123
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARriraleQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 124 AQYQDKLARQRYEDQLRQQQ-----ILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLR--IEAESKARARVERE 196
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQpplalLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAalRAELEAERAELEAL 179
|
170 180
....*....|....*....|....*..
gi 1712965705 197 NADIIREQIRLKAAEH-RQTVLESIKT 222
Cdd:COG4942 180 LAELEEERAALEALKAeRQKLLARLEK 206
|
|
| PRK12373 |
PRK12373 |
NADH-quinone oxidoreductase subunit E; |
741-857 |
3.02e-03 |
|
NADH-quinone oxidoreductase subunit E;
Pssm-ID: 237082 [Multi-domain] Cd Length: 400 Bit Score: 40.94 E-value: 3.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 741 AEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVvevtpPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVT 820
Cdd:PRK12373 208 ASKALAEDIGDTVKRIDGTEVPLLAPWQGDAAPV-----PPSEAARPKSADAETNAALKTPATAPKAAAKNAKAPEAQPV 282
|
90 100 110
....*....|....*....|....*....|....*..
gi 1712965705 821 PPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAP 857
Cdd:PRK12373 283 SGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIARP 319
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
764-919 |
3.07e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 41.51 E-value: 3.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 764 APLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEvTPPPSAEPPLAEDVVAPviEVTPP 843
Cdd:PRK07764 364 LPSASDDERGLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPA-AAAAPAPAAAPQPAPAP--APAPA 440
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965705 844 PSAEVPLAEDVAAPVVEVTPPPSAEaPLAEDVAAPvvevtPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAA 919
Cdd:PRK07764 441 PPSPAGNAPAGGAPSPPPAAAPSAQ-PAPAPAAAP-----EPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAA 510
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
75-221 |
3.19e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.26 E-value: 3.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 75 QEQSTQLEHQSKIKEYEAAVEQLKGDQIRIQGEERRKTLNEETKQHQARAQyqdklARQRYEDQLRQQQI---------- 144
Cdd:pfam17380 306 EEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQE-----ERKRELERIRQEEIameisrmrel 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 145 --LNEENLRKQEESVQKQEAMRKATIEHE------MELRHKNELLRIEAESKARARVERENADIIREQIRLKAAE-HRQT 215
Cdd:pfam17380 381 erLQMERQQKNERVRQELEAARKVKILEEerqrkiQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEqERQQ 460
|
....*.
gi 1712965705 216 VLESIK 221
Cdd:pfam17380 461 QVERLR 466
|
|
| McrB |
COG1401 |
5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB ... |
121-360 |
3.67e-03 |
|
5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB [Defense mechanisms];
Pssm-ID: 441011 [Multi-domain] Cd Length: 477 Bit Score: 40.91 E-value: 3.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 121 QARAQYQDKLARQRYEDQLRQQQILNEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAESKARARVERE---- 196
Cdd:COG1401 2 LRPVLEFKFLIVGLRLKPLESEDAVRELGIRADDLRGAAELATRLAERLSEELLRADRAARATELVEELSAALEVVvlll 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 197 -----NADIIREQIRLKAAEHRQTVLESIKTAGAVFGEGFRAFVSDWDKVTATVAGLTLLAVGVYSARNATGVAGRYIEA 271
Cdd:COG1401 82 dlekvELNEKLALSEAAVAIEELYELEADSEIEAVGLLLELAERSDALEALERARLLLELADLEERAALETEVLEALEAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 272 RLG----KPSLVRETSRFTVGEAIKHPVKTVKRLKSKPQDALEGVVlsptlEERVRDVAIATRNTRqnnglyrNILMYGP 347
Cdd:COG1401 162 LEEllaaPEDLSADALAAELSAAEELYSEDLESEDDYLKDLLREKF-----EETLEAFLAALKTKK-------NVILAGP 229
|
250
....*....|...
gi 1712965705 348 PGTGKTLFAKKLA 360
Cdd:COG1401 230 PGTGKTYLARRLA 242
|
|
| PRK11855 |
PRK11855 |
dihydrolipoamide acetyltransferase; Reviewed |
749-899 |
3.69e-03 |
|
dihydrolipoamide acetyltransferase; Reviewed
Pssm-ID: 237000 [Multi-domain] Cd Length: 547 Bit Score: 40.96 E-value: 3.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 749 VAAPVVEV-----TPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPsaeapLAEDVAAPVVEVTPPP 823
Cdd:PRK11855 68 VGGLLAVIeaagaAAAAAAPAAAAAPAAAAAAAPAPAAAAPAAAAAAAGGGVVEVKVPD-----IGEITEVEVIEWLVKV 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 824 ----SAEPPLAE--------DVVAP----VIEVTPP---------PSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAP 878
Cdd:PRK11855 143 gdtvEEDQSLITvetdkatmEIPSPvagvVKEIKVKvgdkvsvgsLLVVIEVAAAAPAAAAAPAAAAPAAAAAAAPAPAP 222
|
170 180
....*....|....*....|.
gi 1712965705 879 VVEVTPPPSAEAPLAEDVAAP 899
Cdd:PRK11855 223 AAAAAPAAAAPAAAAAPGKAP 243
|
|
| PRK10819 |
PRK10819 |
transport protein TonB; Provisional |
730-849 |
3.86e-03 |
|
transport protein TonB; Provisional
Pssm-ID: 236768 [Multi-domain] Cd Length: 246 Bit Score: 40.05 E-value: 3.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 730 APVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEaPLA 809
Cdd:PRK10819 33 TSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPK-PVK 111
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1712965705 810 EDVAAPVVEVTPP-PSAEPPLAEDVVAPVIEVTPPPSAEVP 849
Cdd:PRK10819 112 KVEEQPKREVKPVePRPASPFENTAPARPTSSTATAAASKP 152
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
84-221 |
3.86e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.92 E-value: 3.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 84 QSKIKEYEAAVEQLKgDQIRIQGEERRKTLNEETKQ--HQARAQYQDKLARQRYEDQLRQQQILN-EENLRKQEESVQKQ 160
Cdd:PRK12704 30 EAKIKEAEEEAKRIL-EEAKKEAEAIKKEALLEAKEeiHKLRNEFEKELRERRNELQKLEKRLLQkEENLDRKLELLEKR 108
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1712965705 161 eamrkatiEHEMELRHKNELLRIEAESKARARVERenadIIREQIR-------LKAAEHRQTVLESIK 221
Cdd:PRK12704 109 --------EEELEKKEKELEQKQQELEKKEEELEE----LIEEQLQelerisgLTAEEAKEILLEKVE 164
|
|
| RecA-like_PEX1_r2 |
cd19526 |
second of two ATPase domains of Peroxisomal biogenesis factor 1 (PEX1); PEX1(also known as ... |
338-414 |
4.00e-03 |
|
second of two ATPase domains of Peroxisomal biogenesis factor 1 (PEX1); PEX1(also known as Peroxin-1)/PEX6 is a protein unfoldase; PEX1 and PEX6 form a heterohexameric Type-2 AAA-ATPase complex and are essential for peroxisome biogenesis as they are required for the import of folded proteins into the peroxisomal matrix. PEX-1 is required for stability of PEX5. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410934 [Multi-domain] Cd Length: 158 Bit Score: 38.95 E-value: 4.00e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1712965705 338 LYRNILMYGPPGTGKTLFAKKLAMHSGMDYAIMTGGDVAP--MGRDGvTAMHKVFDWANtSRRGLLLFVDEADAFLRKR 414
Cdd:cd19526 26 LRSGILLYGPPGCGKTLLASAIASECGLNFISVKGPELLNkyIGASE-QNVRDLFSRAQ-SAKPCILFFDEFDSIAPKR 102
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
674-898 |
4.09e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 41.46 E-value: 4.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 674 PDVIAPIVEVTPPPSEEAVAAAPLVQDVITPVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEV----------------TP 737
Cdd:PHA03247 282 PEAAAPNGAAAPPDGVWGAALAGAPLALPAPPDPPPPAPAGDAEEEDDEDGAMEVVSPLPRPrqhyplgfpkrrrptwTP 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 738 PPSAEAPLAEDVAAPVvevTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDvaapvv 817
Cdd:PHA03247 362 PSSLEDLSAGRHHPKR---ASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPA------ 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 818 evTPPPSAEPPlAEDVVAPVIEVTPPPSAEVPL--AEDVAAPVV-----EVTPPPSAEAPLAE------DVAAPVVEVTp 884
Cdd:PHA03247 433 --TPLPSAEPG-SDDGPAPPPERQPPAPATEPApdDPDDATRKAldalrERRPPEPPGADLAEllgrhpDTAGTVVRLA- 508
|
250
....*....|....
gi 1712965705 885 ppSAEAPLAEDVAA 898
Cdd:PHA03247 509 --AREAAIAREVAE 520
|
|
| Mg_chelatase |
pfam01078 |
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that ... |
341-359 |
4.13e-03 |
|
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that catalyzes the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Pssm-ID: 426032 [Multi-domain] Cd Length: 207 Bit Score: 39.83 E-value: 4.13e-03
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
724-789 |
4.16e-03 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 41.14 E-value: 4.16e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965705 724 LVQDVIAPVVEVTPPPSAEAplAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAE 789
Cdd:COG5373 37 LAEAAEAASAPAEPEPEAAA--AATAAAPEAAPAPVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAA 100
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
69-220 |
4.31e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 4.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 69 LDLARMQEQSTQLEHQSK-----IKEYEAAVEQLKGDQIRIQGE-----ERRKTLNEETKQHQAR-AQYQDKLARQRYED 137
Cdd:COG1579 10 LDLQELDSELDRLEHRLKelpaeLAELEDELAALEARLEAAKTEledleKEIKRLELEIEEVEARiKKYEEQLGNVRNNK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 138 QL-----------RQQQILNEENLRKQEESVQKQEAMRKAtiehemelrhKNELLRIEAESKA-RARVERENADIIREQI 205
Cdd:COG1579 90 EYealqkeieslkRRISDLEDEILELMERIEELEEELAEL----------EAELAELEAELEEkKAELDEELAELEAELE 159
|
170
....*....|....*
gi 1712965705 206 RLKAAehRQTVLESI 220
Cdd:COG1579 160 ELEAE--REELAAKI 172
|
|
| ZipA |
COG3115 |
Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome ... |
809-924 |
4.40e-03 |
|
Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442349 [Multi-domain] Cd Length: 298 Bit Score: 40.45 E-value: 4.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 809 AEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEvtPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSA 888
Cdd:COG3115 48 DGIGEVRVVAAEAPERVEPEASFDAEDEVRE--PDQEEVDPLLDDEADIEAAPAEPVRWAGTAAAVEPAPEQEAYEEAGP 125
|
90 100 110
....*....|....*....|....*....|....*.
gi 1712965705 889 EAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEV 924
Cdd:COG3115 126 AGESAEQEDAPAEEPEAEAPAEEALAAELCAEPEEV 161
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
593-788 |
4.49e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 41.01 E-value: 4.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 593 VLPLSEAPQAKDVVAPVVEVTPPPPPSAEVAAPQIQDVITQVLEAMPPPSVEAAAPQAQDVATPIAEvTPPPSVEVEPPL 672
Cdd:PRK12323 395 AAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAA-ARPAAAGPRPVA 473
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 673 VPDVIApivevtPPPSEEAVAAAPLVQDvitpvvevtPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSAEAPLAEDVAAP 752
Cdd:PRK12323 474 AAAAAA------PARAAPAAAPAPADDD---------PPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAF 538
|
170 180 190
....*....|....*....|....*....|....*.
gi 1712965705 753 VVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLA 788
Cdd:PRK12323 539 ETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLP 574
|
|
| PRK10819 |
PRK10819 |
transport protein TonB; Provisional |
814-931 |
4.65e-03 |
|
transport protein TonB; Provisional
Pssm-ID: 236768 [Multi-domain] Cd Length: 246 Bit Score: 40.05 E-value: 4.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 814 APVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEaPLA 893
Cdd:PRK10819 33 TSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPK-PVK 111
|
90 100 110
....*....|....*....|....*....|....*....
gi 1712965705 894 EDVAAPVVEVTPP-PSVEAPLAEDVAAPVVEVTPPPSAE 931
Cdd:PRK10819 112 KVEEQPKREVKPVePRPASPFENTAPARPTSSTATAAAS 150
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
775-922 |
4.88e-03 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 40.72 E-value: 4.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 775 VEVTPPPSAE-APLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLaedvvapvievtPPPSAEVPLAED 853
Cdd:PRK06995 38 VEIVALADSDlAALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKR------------LTAQREQLVARA 105
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1712965705 854 VAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAApvvevTPPPSVEAPLAEDVAAPVV 922
Cdd:PRK06995 106 AAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAA-----AVADAVKARIERIVNDTVM 169
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
704-840 |
4.91e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 40.70 E-value: 4.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 704 PVVEVTPPPSEEAVAAAAAPlvqDVIAPVVEVTPPPSA-EAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPvvevtPPPS 782
Cdd:PRK14954 376 NDGGVAPSPAGSPDVKKKAP---EPDLPQPDRHPGPAKpEAPGARPAELPSPASAPTPEQQPPVARSAPLP-----PSPQ 447
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1712965705 783 AEAPLAEDVAAPVVEVTpppSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEV 840
Cdd:PRK14954 448 ASAPRNVASGKPGVDLG---SWQGKFMNFTRNGSRKQPVQASSSDAAQTGVFEGVAEL 502
|
|
| PRK12373 |
PRK12373 |
NADH-quinone oxidoreductase subunit E; |
804-920 |
5.16e-03 |
|
NADH-quinone oxidoreductase subunit E;
Pssm-ID: 237082 [Multi-domain] Cd Length: 400 Bit Score: 40.56 E-value: 5.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 804 AEAPLAEDVAAPV--VEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEvplaedvAAPVVEVTPPPSAEAPLAEDVAAPVVE 881
Cdd:PRK12373 208 ASKALAEDIGDTVkrIDGTEVPLLAPWQGDAAPVPPSEAARPKSAD-------AETNAALKTPATAPKAAAKNAKAPEAQ 280
|
90 100 110
....*....|....*....|....*....|....*....
gi 1712965705 882 VTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAP 920
Cdd:PRK12373 281 PVSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIARP 319
|
|
| RNA_helicase |
pfam00910 |
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding ... |
342-362 |
5.18e-03 |
|
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Pssm-ID: 459992 Cd Length: 102 Bit Score: 37.58 E-value: 5.18e-03
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
789-933 |
5.38e-03 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 40.14 E-value: 5.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 789 EDVAAPVVEVTPPPSAEAPLAEDVAAPVVevtPPPSAEPPLAEDvvapviEVTPPPSAEVPLAEDVAAPVVEVTPPPSAE 868
Cdd:NF040712 190 PDFGRPLRPLATVPRLAREPADARPEEVE---PAPAAEGAPATD------SDPAEAGTPDDLASARRRRAGVEQPEDEPV 260
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1712965705 869 APLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPPSAEVK 933
Cdd:NF040712 261 GPGAAPAAEPDEATRDAGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPKPK 325
|
|
| PRK10819 |
PRK10819 |
transport protein TonB; Provisional |
793-912 |
5.57e-03 |
|
transport protein TonB; Provisional
Pssm-ID: 236768 [Multi-domain] Cd Length: 246 Bit Score: 39.67 E-value: 5.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 793 APVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPLAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPPPSAEaPLA 872
Cdd:PRK10819 33 TSVHQVIELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKPK-PVK 111
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1712965705 873 EDVAAPVVEVTPP-PSAEAPLAEDVAAPVVEVTPPPSVEAP 912
Cdd:PRK10819 112 KVEEQPKREVKPVePRPASPFENTAPARPTSSTATAAASKP 152
|
|
| DUF3729 |
pfam12526 |
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins ... |
844-930 |
5.86e-03 |
|
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important.
Pssm-ID: 372164 [Multi-domain] Cd Length: 115 Bit Score: 37.75 E-value: 5.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 844 PSAEVPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPvvevtPPPSAEAPLAEDVAAPVVEVTPPPSVEAPlaedvAAPVVE 923
Cdd:pfam12526 29 FSPPESAHPDPPPPVGDPRPPVVDTPPPVSAVWVL-----PPPSEPAAPEPDLVPPVTGPAGPPSPLAP-----PAPAQK 98
|
....*..
gi 1712965705 924 VTPPPSA 930
Cdd:pfam12526 99 PPLPPPR 105
|
|
| ClpX |
COG1219 |
ATP-dependent protease Clp, ATPase subunit ClpX [Posttranslational modification, protein ... |
341-360 |
6.79e-03 |
|
ATP-dependent protease Clp, ATPase subunit ClpX [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440832 [Multi-domain] Cd Length: 409 Bit Score: 40.03 E-value: 6.79e-03
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
49-213 |
7.36e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.43 E-value: 7.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 49 LERAAQAAKDLDKSRHAKEALDLARMQEQSTQLEHQSK-IKEYEAAVEQLKgDQIRIQGEERRKTLNEETKQHQARAQYQ 127
Cdd:TIGR02168 696 LEKALAELRKELEELEEELEQLRKELEELSRQISALRKdLARLEAEVEQLE-ERIAQLSKELTELEAEIEELEERLEEAE 774
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 128 DKLARQryedqlrqqqilnEENLRKQEESVQKQEAMRKATIEHEMELRHKNELLRIEAeSKARARVERENADIIREQIRL 207
Cdd:TIGR02168 775 EELAEA-------------EAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA-ANLRERLESLERRIAATERRL 840
|
....*.
gi 1712965705 208 KAAEHR 213
Cdd:TIGR02168 841 EDLEEQ 846
|
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
868-931 |
7.48e-03 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 40.37 E-value: 7.48e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1712965705 868 EAPLAEDVAAPVVEVTPPPSAEAplAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPPSAE 931
Cdd:COG5373 34 EAELAEAAEAASAPAEPEPEAAA--AATAAAPEAAPAPVPEAPAAPPAAAEAPAPAAAAPPAEA 95
|
|
| clpX |
PRK05342 |
ATP-dependent Clp protease ATP-binding subunit ClpX; |
341-360 |
7.90e-03 |
|
ATP-dependent Clp protease ATP-binding subunit ClpX;
Pssm-ID: 235422 [Multi-domain] Cd Length: 412 Bit Score: 39.76 E-value: 7.90e-03
|
| COG5373 |
COG5373 |
Uncharacterized membrane protein [Function unknown]; |
829-894 |
8.01e-03 |
|
Uncharacterized membrane protein [Function unknown];
Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 39.98 E-value: 8.01e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965705 829 LAEDVVAPVIEVTPPPSAEVplAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAE 894
Cdd:COG5373 37 LAEAAEAASAPAEPEPEAAA--AATAAAPEAAPAPVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAA 100
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
735-818 |
8.52e-03 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 40.26 E-value: 8.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 735 VTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDV-- 812
Cdd:PRK12270 42 AAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPlr 121
|
....*...
gi 1712965705 813 --AAPVVE 818
Cdd:PRK12270 122 gaAAAVAK 129
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
785-930 |
8.74e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 39.97 E-value: 8.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 785 APLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPPlAEDVVAPVIEVTPPPSAEVPLAEDVAAPVVEVTPP 864
Cdd:PRK07764 364 LPSASDDERGLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPA-AAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPP 442
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1712965705 865 PSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSVEAPLAEDVAAPVVEVTPPPSA 930
Cdd:PRK07764 443 SPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADD 508
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
335-359 |
8.93e-03 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 39.45 E-value: 8.93e-03
10 20
....*....|....*....|....*
gi 1712965705 335 NNGLYRNILMYGPPGTGKTLFAKKL 359
Cdd:COG1474 47 RGERPSNVLIYGPTGTGKTAVAKYV 71
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
335-369 |
9.15e-03 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 40.09 E-value: 9.15e-03
10 20 30
....*....|....*....|....*....|....*
gi 1712965705 335 NNGLyrNILMYGPPGTGKTLFAKklAMHSgmdYAI 369
Cdd:COG1221 128 PKGL--HTLILGPTGVGKSFFAE--LMYE---YAI 155
|
|
| YifB |
COG0606 |
Predicted Mg-chelatase, contains ChlI-like and ATPase domains, YifB family [Posttranslational ... |
341-359 |
9.20e-03 |
|
Predicted Mg-chelatase, contains ChlI-like and ATPase domains, YifB family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440371 [Multi-domain] Cd Length: 502 Bit Score: 39.64 E-value: 9.20e-03
|
| PHA03379 |
PHA03379 |
EBNA-3A; Provisional |
679-914 |
9.73e-03 |
|
EBNA-3A; Provisional
Pssm-ID: 223066 [Multi-domain] Cd Length: 935 Bit Score: 40.04 E-value: 9.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 679 PIVEVTPPPSEE--AVAAAPLVQDVITPVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEVTPPpsAEAPLAEDVAAPVVEV 756
Cdd:PHA03379 447 PVHDLEPGPLHDqhSMAPCPVAQLPPGPLQDLEPGDQLPGVVQDGRPACAPVPAPAGPIVRP--WEASLSQVPGVAFAPV 524
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 757 TPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVT----PPPSAEAPLAEDVAAPVVEvtpPPSAEPPLAED 832
Cdd:PHA03379 525 MPQPMPVEPVPVPTVALERPVCPAPPLIAMQGPGETSGIVRVRerwrPAPWTPNPPRSPSQMSVRD---RLARLRAEAQP 601
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 833 VVAPViEVTPPPSAEVPLAEDVAAPVV--EVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLaedvaapvvevTPPPSVE 910
Cdd:PHA03379 602 YQASV-EVQPPQLTQVSPQQPMEYPLEpeQQMFPGSPFSQVADVMRAGGVPAMQPQYFDLPL-----------QQPISQG 669
|
....
gi 1712965705 911 APLA 914
Cdd:PHA03379 670 APLA 673
|
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
703-828 |
9.97e-03 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 39.37 E-value: 9.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1712965705 703 TPVVEVTPPPSEEAVAAAAAPLVQDVIAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPS 782
Cdd:NF040712 196 LRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRRRAGVEQPEDEPVGPGAAPAAEPDEATR 275
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1712965705 783 AEAPLAEDVAAPVVEVTPPPSAEAPLAEDVAAPVVEVTPPPSAEPP 828
Cdd:NF040712 276 DAGEPPAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPA 321
|
|
| |
