POU domain, class 6, transcription factor 1 isoform X9 [Mus musculus]
POU family transcription factor( domain architecture ID 11036637)
POU (Pit-Oct-Unc) family transcription factor binds specific DNA sequences to direct gene expression programs, playing a role in orchestrating embryonic development and directing cellular fate
List of domain hits
Name | Accession | Description | Interval | E-value | |||
Pou super family | cl22952 | Pou domain - N-terminal to homeobox domain; |
169-243 | 1.25e-39 | |||
Pou domain - N-terminal to homeobox domain; The actual alignment was detected with superfamily member smart00352: Pssm-ID: 473999 Cd Length: 75 Bit Score: 134.10 E-value: 1.25e-39
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Homeodomain | pfam00046 | Homeodomain; |
265-321 | 1.77e-21 | |||
Homeodomain; : Pssm-ID: 459649 [Multi-domain] Cd Length: 57 Bit Score: 86.01 E-value: 1.77e-21
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PRK12323 super family | cl46901 | DNA polymerase III subunit gamma/tau; |
41-158 | 4.79e-04 | |||
DNA polymerase III subunit gamma/tau; The actual alignment was detected with superfamily member PRK14951: Pssm-ID: 481241 [Multi-domain] Cd Length: 618 Bit Score: 42.01 E-value: 4.79e-04
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Name | Accession | Description | Interval | E-value | |||
POU | smart00352 | Found in Pit-Oct-Unc transcription factors; |
169-243 | 1.25e-39 | |||
Found in Pit-Oct-Unc transcription factors; Pssm-ID: 197673 Cd Length: 75 Bit Score: 134.10 E-value: 1.25e-39
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Pou | pfam00157 | Pou domain - N-terminal to homeobox domain; |
172-243 | 3.88e-37 | |||
Pou domain - N-terminal to homeobox domain; Pssm-ID: 459692 Cd Length: 72 Bit Score: 127.78 E-value: 3.88e-37
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Homeodomain | pfam00046 | Homeodomain; |
265-321 | 1.77e-21 | |||
Homeodomain; Pssm-ID: 459649 [Multi-domain] Cd Length: 57 Bit Score: 86.01 E-value: 1.77e-21
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HOX | smart00389 | Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ... |
264-320 | 3.70e-19 | |||
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes Pssm-ID: 197696 [Multi-domain] Cd Length: 57 Bit Score: 79.60 E-value: 3.70e-19
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homeodomain | cd00086 | Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ... |
265-323 | 1.41e-17 | |||
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner. Pssm-ID: 238039 [Multi-domain] Cd Length: 59 Bit Score: 75.36 E-value: 1.41e-17
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COG5576 | COG5576 | Homeodomain-containing transcription factor [Transcription]; |
261-320 | 1.42e-07 | |||
Homeodomain-containing transcription factor [Transcription]; Pssm-ID: 227863 [Multi-domain] Cd Length: 156 Bit Score: 50.13 E-value: 1.42e-07
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PRK14951 | PRK14951 | DNA polymerase III subunits gamma and tau; Provisional |
41-158 | 4.79e-04 | |||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 42.01 E-value: 4.79e-04
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Name | Accession | Description | Interval | E-value | ||||
POU | smart00352 | Found in Pit-Oct-Unc transcription factors; |
169-243 | 1.25e-39 | ||||
Found in Pit-Oct-Unc transcription factors; Pssm-ID: 197673 Cd Length: 75 Bit Score: 134.10 E-value: 1.25e-39
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Pou | pfam00157 | Pou domain - N-terminal to homeobox domain; |
172-243 | 3.88e-37 | ||||
Pou domain - N-terminal to homeobox domain; Pssm-ID: 459692 Cd Length: 72 Bit Score: 127.78 E-value: 3.88e-37
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Homeodomain | pfam00046 | Homeodomain; |
265-321 | 1.77e-21 | ||||
Homeodomain; Pssm-ID: 459649 [Multi-domain] Cd Length: 57 Bit Score: 86.01 E-value: 1.77e-21
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HOX | smart00389 | Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ... |
264-320 | 3.70e-19 | ||||
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes Pssm-ID: 197696 [Multi-domain] Cd Length: 57 Bit Score: 79.60 E-value: 3.70e-19
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homeodomain | cd00086 | Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ... |
265-323 | 1.41e-17 | ||||
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner. Pssm-ID: 238039 [Multi-domain] Cd Length: 59 Bit Score: 75.36 E-value: 1.41e-17
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COG5576 | COG5576 | Homeodomain-containing transcription factor [Transcription]; |
261-320 | 1.42e-07 | ||||
Homeodomain-containing transcription factor [Transcription]; Pssm-ID: 227863 [Multi-domain] Cd Length: 156 Bit Score: 50.13 E-value: 1.42e-07
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PRK14951 | PRK14951 | DNA polymerase III subunits gamma and tau; Provisional |
41-158 | 4.79e-04 | ||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 42.01 E-value: 4.79e-04
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PRK07994 | PRK07994 | DNA polymerase III subunits gamma and tau; Validated |
32-172 | 1.12e-03 | ||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 40.62 E-value: 1.12e-03
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PRK14950 | PRK14950 | DNA polymerase III subunits gamma and tau; Provisional |
53-185 | 1.26e-03 | ||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 40.56 E-value: 1.26e-03
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PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
57-165 | 3.18e-03 | ||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 39.54 E-value: 3.18e-03
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PRK13335 | PRK13335 | superantigen-like protein SSL3; Reviewed; |
3-169 | 3.42e-03 | ||||
superantigen-like protein SSL3; Reviewed; Pssm-ID: 139494 [Multi-domain] Cd Length: 356 Bit Score: 38.95 E-value: 3.42e-03
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PRK12323 | PRK12323 | DNA polymerase III subunit gamma/tau; |
48-162 | 5.43e-03 | ||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 38.70 E-value: 5.43e-03
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PRK12323 | PRK12323 | DNA polymerase III subunit gamma/tau; |
29-169 | 6.30e-03 | ||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 38.32 E-value: 6.30e-03
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Blast search parameters | ||||
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