NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1720435696|ref|XP_030107330|]
View 

uncharacterized protein CXorf58 homolog isoform X1 [Mus musculus]

Protein Classification

transcription initiation factor TFIID subunit 1( domain architecture ID 10633817)

transcription initiation factor TFIID subunit 1 (TAF1) is part of the TFIID complex that plays a major role in the initiation of RNA polymerase II (Pol II)-dependent transcription

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
zf-CCHC_6 pfam15288
Zinc knuckle; This Zinc knuckle is found in FAM90A mammalian proteins.
 33-74 1.06e-21

Zinc knuckle; This Zinc knuckle is found in FAM90A mammalian proteins.


:

Pssm-ID: 464616 [Multi-domain]  Cd Length: 42  Bit Score: 87.05  E-value: 1.06e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1720435696  33 RVKCRDCGAFGHTVRSRKCPIKCWDGAKAPLPLGVKKEKENR 74
Cdd:pfam15288   1 RVKCKNCGAFGHTARSKRCPIKCWNGALVPQPLGSKKEKENL 42
 
Name Accession Description Interval E-value
zf-CCHC_6 pfam15288
Zinc knuckle; This Zinc knuckle is found in FAM90A mammalian proteins.
 33-74 1.06e-21

Zinc knuckle; This Zinc knuckle is found in FAM90A mammalian proteins.


Pssm-ID: 464616 [Multi-domain]  Cd Length: 42  Bit Score: 87.05  E-value: 1.06e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1720435696  33 RVKCRDCGAFGHTVRSRKCPIKCWDGAKAPLPLGVKKEKENR 74
Cdd:pfam15288   1 RVKCKNCGAFGHTARSKRCPIKCWNGALVPQPLGSKKEKENL 42
 
Name Accession Description Interval E-value
zf-CCHC_6 pfam15288
Zinc knuckle; This Zinc knuckle is found in FAM90A mammalian proteins.
 33-74 1.06e-21

Zinc knuckle; This Zinc knuckle is found in FAM90A mammalian proteins.


Pssm-ID: 464616 [Multi-domain]  Cd Length: 42  Bit Score: 87.05  E-value: 1.06e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1720435696  33 RVKCRDCGAFGHTVRSRKCPIKCWDGAKAPLPLGVKKEKENR 74
Cdd:pfam15288   1 RVKCKNCGAFGHTARSKRCPIKCWNGALVPQPLGSKKEKENL 42
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH