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DIS3-like exonuclease 2 isoform X7 [Mus musculus]
Protein Classification
ribonuclease R family protein ( domain architecture ID 11426128 )
ribonuclease R (RNaseR or RNR) family protein similar to RNR, a 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs
List of domain hits
Name
Accession
Description
Interval
E-value
VacB super family
cl43181 Exoribonuclease R [Transcription];
7-536
1.83e-124
Exoribonuclease R [Transcription];
COG0557 :Pssm-ID: 440323 [Multi-domain]
Cd Length: 711
Bit Score: 385.23
E-value: 1.83e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 7 PIPQ D T RG LS E kslqks AK VV Y ILE KKHS R A a T G ILKLL adknsdlf K KYALFS P S D H R VPR - I YV P LK D CPQ dfmtr P K 85
Cdd:COG0557 113 VTKE D R RG RP E ------ GR VV E ILE RANT R V - V G RFEKE -------- K GFGFVV P D D K R LLQ d I FI P PD D LNG ----- A K 172
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 86 D fa NT L FICR I IDWK E DCNFAL G QLAKS LG QA G EIEP E TEGILTEY G VDF s D F SS EVL ECL p QS LP WTI P PDEVGK RRDL 165
Cdd:COG0557 173 D -- GD L VVVE I TRYP E RRGPPE G RVVEV LG SP G DPGA E ILIAIRKH G LPH - E F PE EVL AEA - EA LP DEV P EADLKG RRDL 248
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 166 R KDCIF TID PST A R D L DDA LACRR L TD G TFEV GVHIADVS YF V PE GS S LD KV A AE R A TSVYL VQK V V PMLP RL L CEE LCS 245
Cdd:COG0557 249 R DLPLV TID GED A K D F DDA VSAEK L DN G GWRL GVHIADVS HY V RP GS A LD RE A RK R G TSVYL PDR V I PMLP ER L SNG LCS 328
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 246 LNP MT D K L TF S VIWKLTPE G KILEEW F G R TI IRS CTK L S Y DHA Q SMIENPT E KIP EE E lppispehsv EEVHQAVLN L HS 325
Cdd:COG0557 329 LNP GE D R L AM S CEMEIDAK G EVVSYE F Y R SV IRS DAR L T Y EEV Q AILDGKD E ELR EE Y ---------- ADLVPMLEE L YE 398
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 326 I AK Q LR RQ R FVD GA LRL D QLKLAFT LD h E T G L P QGCHIY E YR D SN KL V EEFMLLAN M AVA HKIFRT fp EQAL L R R - H PP P 404
Cdd:COG0557 399 L AK I LR KA R EKR GA IDF D LPETKII LD - E E G K P EDIVPR E RN D AH KL I EEFMLLAN E AVA EFLEKL -- KLPF L Y R v H EE P 475
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 405 QTKM L SD L V EF CDQM GL PM --- D VSSAGA L N K s L TKTFGDDKYS lark E V L TNMYS R P M QM A L Y fcsgmlq DQ E QFR H YA 481
Cdd:COG0557 476 DPEK L EA L R EF LANL GL KL kgg D EPTPKD L Q K - L LEQVKGRPEE ---- E L L NTLLL R S M KQ A V Y ------- SP E NIG H FG 543
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 1720354361 482 L NVPL YTHFTSPIRR FA D VI VHR L L A A A L G --- YSEQPDVEPDT L QKQ A D HC NDR - R M A 536
Cdd:COG0557 544 L ALEA YTHFTSPIRR YP D LL VHR A L K A Y L E gkr SPGLQEYLEEE L EEI A E HC SET e R R A 602
Dis3l2_C_term
pfam17877 DIS3-like exonuclease 2 C terminal; This is the C-terminal S1 domain found in Dis3L2 proteins. ...
557-646
2.46e-31
DIS3-like exonuclease 2 C terminal; This is the C-terminal S1 domain found in Dis3L2 proteins. Dis3L2 belongs to the RNase II/R 3-5 exonuclease superfamily, which includes the catalytic subunit of the RNA exosome in yeast and in humans.
Pssm-ID: 465547
Cd Length: 87
Bit Score: 116.98
E-value: 2.46e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 557 GPLE S EA M V M GVL NQA FDVL VLRF G VQ KR I Y CNA L A L RSYS F Q K V G K kpe LTL V W EPDDLEEEPTQQVITIF SLV D VVL Q 636
Cdd:pfam17877 1 GPLE T EA V V L GVL DSS FDVL IPEY G IE KR V Y LDQ L P L KKFE F D K T G V --- LTL Y W KKGVPSSAYVPEDERFS SLV V VVL K 77
90
....*....|
gi 1720354361 637 AEATA LK YS A 646
Cdd:pfam17877 78 SDSDP LK LE A 87
Name
Accession
Description
Interval
E-value
VacB
COG0557 Exoribonuclease R [Transcription];
7-536
1.83e-124
Exoribonuclease R [Transcription];
Pssm-ID: 440323 [Multi-domain]
Cd Length: 711
Bit Score: 385.23
E-value: 1.83e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 7 PIPQ D T RG LS E kslqks AK VV Y ILE KKHS R A a T G ILKLL adknsdlf K KYALFS P S D H R VPR - I YV P LK D CPQ dfmtr P K 85
Cdd:COG0557 113 VTKE D R RG RP E ------ GR VV E ILE RANT R V - V G RFEKE -------- K GFGFVV P D D K R LLQ d I FI P PD D LNG ----- A K 172
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 86 D fa NT L FICR I IDWK E DCNFAL G QLAKS LG QA G EIEP E TEGILTEY G VDF s D F SS EVL ECL p QS LP WTI P PDEVGK RRDL 165
Cdd:COG0557 173 D -- GD L VVVE I TRYP E RRGPPE G RVVEV LG SP G DPGA E ILIAIRKH G LPH - E F PE EVL AEA - EA LP DEV P EADLKG RRDL 248
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 166 R KDCIF TID PST A R D L DDA LACRR L TD G TFEV GVHIADVS YF V PE GS S LD KV A AE R A TSVYL VQK V V PMLP RL L CEE LCS 245
Cdd:COG0557 249 R DLPLV TID GED A K D F DDA VSAEK L DN G GWRL GVHIADVS HY V RP GS A LD RE A RK R G TSVYL PDR V I PMLP ER L SNG LCS 328
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 246 LNP MT D K L TF S VIWKLTPE G KILEEW F G R TI IRS CTK L S Y DHA Q SMIENPT E KIP EE E lppispehsv EEVHQAVLN L HS 325
Cdd:COG0557 329 LNP GE D R L AM S CEMEIDAK G EVVSYE F Y R SV IRS DAR L T Y EEV Q AILDGKD E ELR EE Y ---------- ADLVPMLEE L YE 398
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 326 I AK Q LR RQ R FVD GA LRL D QLKLAFT LD h E T G L P QGCHIY E YR D SN KL V EEFMLLAN M AVA HKIFRT fp EQAL L R R - H PP P 404
Cdd:COG0557 399 L AK I LR KA R EKR GA IDF D LPETKII LD - E E G K P EDIVPR E RN D AH KL I EEFMLLAN E AVA EFLEKL -- KLPF L Y R v H EE P 475
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 405 QTKM L SD L V EF CDQM GL PM --- D VSSAGA L N K s L TKTFGDDKYS lark E V L TNMYS R P M QM A L Y fcsgmlq DQ E QFR H YA 481
Cdd:COG0557 476 DPEK L EA L R EF LANL GL KL kgg D EPTPKD L Q K - L LEQVKGRPEE ---- E L L NTLLL R S M KQ A V Y ------- SP E NIG H FG 543
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 1720354361 482 L NVPL YTHFTSPIRR FA D VI VHR L L A A A L G --- YSEQPDVEPDT L QKQ A D HC NDR - R M A 536
Cdd:COG0557 544 L ALEA YTHFTSPIRR YP D LL VHR A L K A Y L E gkr SPGLQEYLEEE L EEI A E HC SET e R R A 602
RNB
pfam00773 RNB domain; This domain is the catalytic domain of ribonuclease II.
162-510
6.88e-115
RNB domain; This domain is the catalytic domain of ribonuclease II.
Pssm-ID: 459934 [Multi-domain]
Cd Length: 314
Bit Score: 346.96
E-value: 6.88e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 162 R R DLR KDCIF TIDP ST A R DLDDA LACRR L TD G TFEV GVHIADVS YF VP E GS S LD KV A AE R A TSVYL VQK V V PMLP RL L CE 241
Cdd:pfam00773 1 R K DLR DLPFI TIDP AD A K DLDDA ISVEK L PN G GYRL GVHIADVS HY VP P GS P LD RE A RK R G TSVYL PDR V I PMLP EK L SN 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 242 E LCSLNP MT D K L TF SV IWKLTPE G KILEEWFGRTI IRS CTK L S Y DHAQSMI E NPTEKIPEEE L ppispehsveev HQAVL 321
Cdd:pfam00773 81 D LCSLNP GE D R L AL SV EITIDAD G EVTSYEIYPSV IRS KAR L T Y EEVDDLL E GKDAEKDKPD L ------------ AEDLR 148
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 322 N L HSI AK Q LR RQ R FVD GAL R LD QLKLAFT LD H E T gl PQGCH I Y E YR D SNK L V EEFMLLAN M AVA HKI f RTFPEQ AL L R R H 401
Cdd:pfam00773 149 L L YEL AK I LR AK R LQR GAL D LD TPENKLI LD E E G -- VIDIL I Q E RT D AHS L I EEFMLLAN E AVA RHL - QELGIP AL Y R V H 225
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 402 P P P QTKM L SD L VEFCDQMGLPM dvssag A L N KSL T K TFG D dkyslar KEV L TNMYS R P M QM A L Y F csgmlqd Q E QFR H YA 481
Cdd:pfam00773 226 P E P DLEK L NS L IKLLQLLPDDK ------ G L S KSL E K IKD D ------- ERL L SILLL R T M PR A E Y S ------- P E PLG H FG 285
330 340
....*....|....*....|....*....
gi 1720354361 482 L NVPL YTHFTSPIRR FA D V IVHR L L A A A L 510
Cdd:pfam00773 286 L GLDI YTHFTSPIRR YP D L IVHR Q L K A L L 314
RNB
smart00955 This domain is the catalytic domain of ribonuclease II;
162-511
4.46e-106
This domain is the catalytic domain of ribonuclease II;
Pssm-ID: 214935 [Multi-domain]
Cd Length: 286
Bit Score: 323.06
E-value: 4.46e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 162 R R DLR KDCI FTIDP ST A R D L DDA LACRR L TD G TFEV GVHIADVS YF V PE GS S LD KV A AE R A TSVYL VQK V V PMLP RL L CE 241
Cdd:smart00955 1 R V DLR DLPL FTIDP ED A K D I DDA VSVEK L DN G GYRL GVHIADVS HY V KP GS A LD RE A RK R G TSVYL PDR V I PMLP EE L SN 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 242 E LCSLNP MT D K L TF SV IWK L TPE G - K IL EEW F G R TI IRS CTK L S Y DHAQSMI E N ptekipeeelppispehsveevhqav 320
Cdd:smart00955 81 G LCSLNP GE D R L AL SV EMT L DAD G g E IL DYE F Y R SV IRS KAR L T Y EEVDAIL E K -------------------------- 134
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 321 lnlhsiakqlrrqrfvdgalrldqlkla FT LD H E t G LPQGCHIY E YR D SNK LVEEFM L LAN M AVA HKIFRTFP e QA L L R R 400
Cdd:smart00955 135 ---------------------------- IV LD E E - G KIEDIVPR E RN D AHS LVEEFM I LAN E AVA RFLAKNGI - PG L Y R V 184
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 401 H PP P QTKM L SD - L V EF CDQM GL PM - DVSSAG AL N K S L T K TFGDDK yslar KEV L TNMYS R P M QM A L Y FCSG mlqdqeq FR 478
Cdd:smart00955 185 H EG P DPEK L AE l L K EF LALL GL LL l GGDGPK AL A K L L E K IRDSPE ----- ERL L ELLLL R S M PH A E Y SVDN ------- SG 252
330 340 350
....*....|....*....|....*....|...
gi 1720354361 479 H YA L NVPL YTHFTSPIRR FA D V IVHR L L A AAL G 511
Cdd:smart00955 253 H FG L ALDA YTHFTSPIRR YP D L IVHR Q L K AAL R 285
RNase_R
TIGR02063 ribonuclease R; This family consists of an exoribonuclease, ribonuclease R, also called VacB. ...
22-533
3.82e-99
ribonuclease R; This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA]
Pssm-ID: 273947 [Multi-domain]
Cd Length: 709
Bit Score: 319.22
E-value: 3.82e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 22 KS A K V VY ILE KKHSRAATGILKL ladknsdlf KKYALFS P S D H R VP - R I YV P LKDC pqdfm TRPKD fa NTLFICR I IDWK 100
Cdd:TIGR02063 123 FE A R V IK ILE RANDQIVGTFYIE --------- NGIGFVI P D D K R IY l D I FI P PEQI ----- LGAEE -- GDKVLVE I TKYP 186
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 101 EDCNF A L G QLAKS LG Q A GEIEPETEG I LTEY G VDF s D F SS EVL E c LPQSL P WTI P PD E VGK R R DLR KDCIF TID PST A R D 180
Cdd:TIGR02063 187 DRNRP A I G KVVEI LG H A DDPGIDILI I IRKH G IPY - E F PE EVL D - EAAKI P EEV P EE E IKG R K DLR DLPFV TID GED A K D 264
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 181 L DDA LACRR L T DG TFEV GV H IADVS YF V P EGS S LDK V A AE R A TSVYL VQK V V PMLP RL L CEEL CSLNP MT D K LT F S VIWK 260
Cdd:TIGR02063 265 F DDA VYVEK L K DG NYKL GV A IADVS HY V R EGS A LDK E A LK R G TSVYL PDR V I PMLP ER L SNGI CSLNP NE D R LT L S CEME 344
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 261 LTPE G KILEEW F GRTI I R S CTK L S Y DHAQSM IE N pt EKIPEEEL PP ISPE hsveevhqa VL NL HSIA K Q LR RQ R FVD GA L 340
Cdd:TIGR02063 345 IDKK G RVKKYE F YEAV I N S HAR L T Y NQVNDI IE G -- KDALDKKE PP LKEM --------- LK NL FELY K I LR KK R KKR GA I 413
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 341 RL D QLKLAFT LD h E T G L P QGCHIY E YR D SN KL V EEFM LL AN MA VA HKIFRT f PEQALL R R H PP P QTKM L SD L V EF CDQM G 420
Cdd:TIGR02063 414 DF D SKEAKII LD - E N G K P IDIVPR E RG D AH KL I EEFM IA AN ET VA EHLEKA - KLPFIY R V H ER P SEEK L QN L R EF LKTL G 491
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 421 LPMDVSSA ----- GALN K S L T K TF G DDKYS L ARKEV L tnmys R P MQ M A L Y fcsgmlq DQ E QFR H YA L NVPL YTHFTSPIR 495
Cdd:TIGR02063 492 ITLKGGTS dkpqp KDFQ K L L E K VK G RPEEE L INTVL L ----- R S MQ Q A K Y ------- SP E NIG H FG L ALEY YTHFTSPIR 559
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 1720354361 496 R FA D V IVHRL LAA AL G ------ YSEQPDVEPDT L QKQ A D H CNDR 533
Cdd:TIGR02063 560 R YP D L IVHRL IKK AL F ggentt TEKEREYLEAK L EEI A E H SSKT 603
PRK11642
PRK11642 ribonuclease R;
156-542
2.13e-41
ribonuclease R;
Pssm-ID: 236944 [Multi-domain]
Cd Length: 813
Bit Score: 161.45
E-value: 2.13e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 156 P D E VGKR R - DLR KDCIF TID PST ARD L DDA LA C RRLTD G TFEVG V H IADVSY F V PEGSS LD KV A AE R A TSVY LVQK VVPM 234
Cdd:PRK11642 253 P E E AKAG R v DLR DLPLV TID GED ARD F DDA VY C EKKRG G GWRLW V A IADVSY Y V RPPTP LD RE A RN R G TSVY FPSQ VVPM 332
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 235 LP RL L CEE LCSLNP MT D K L TFSVIWKLTPE G KILEEW F GRTIIR S CTK L S Y DHAQSMIEN p TEKIP E EEL P PISP ehs V E 314
Cdd:PRK11642 333 LP EV L SNG LCSLNP QV D R L CMVCEMTISSK G RLTGYK F YEAVMS S HAR L T Y TKVWHILQG - DQDLR E QYA P LVKH --- L E 408
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 315 E V H qavl NL HSIAKQL R RQ R fvd G ALRLDQLKLA F TLDH E TGLPQ g CHIYEYR D SN KL V EE F M L LAN MAV A h KIFRTFP E 394
Cdd:PRK11642 409 E L H ---- NL YKVLDKA R EE R --- G GISFESEEAK F IFNA E RRIER - IEQTQRN D AH KL I EE C M I LAN ISA A - RFVEKAK E 479
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 395 Q AL L R R H PP P Q T KMLSDLVEFCDQM GL pmdvs SAGAL NK SLTKTFGDDKY S L A RK --- E V L TN M YS R P M QM A L Y fcsgml 471
Cdd:PRK11642 480 P AL F R I H DK P S T EAITSFRSVLAEL GL ----- ELPGG NK PEPRDYAELLE S V A DR pda E M L QT M LL R S M KQ A I Y ------ 548
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 472 q D Q E QFR H YA L NVPL Y T HFTSPIRR FA D VIV HR ---- LLA AAL G YSE -------- QPDV E p DT LQ k QAD HC N drr M ASK R 539
Cdd:PRK11642 549 - D P E NRG H FG L ALQS Y A HFTSPIRR YP D LSL HR aiky LLA KEQ G HKG nttetggy HYSM E - EM LQ - LGQ HC S --- M TER R 622
...
gi 1720354361 540 VQ E 542
Cdd:PRK11642 623 AD E 625
Dis3l2_C_term
pfam17877 DIS3-like exonuclease 2 C terminal; This is the C-terminal S1 domain found in Dis3L2 proteins. ...
557-646
2.46e-31
DIS3-like exonuclease 2 C terminal; This is the C-terminal S1 domain found in Dis3L2 proteins. Dis3L2 belongs to the RNase II/R 3-5 exonuclease superfamily, which includes the catalytic subunit of the RNA exosome in yeast and in humans.
Pssm-ID: 465547
Cd Length: 87
Bit Score: 116.98
E-value: 2.46e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 557 GPLE S EA M V M GVL NQA FDVL VLRF G VQ KR I Y CNA L A L RSYS F Q K V G K kpe LTL V W EPDDLEEEPTQQVITIF SLV D VVL Q 636
Cdd:pfam17877 1 GPLE T EA V V L GVL DSS FDVL IPEY G IE KR V Y LDQ L P L KKFE F D K T G V --- LTL Y W KKGVPSSAYVPEDERFS SLV V VVL K 77
90
....*....|
gi 1720354361 637 AEATA LK YS A 646
Cdd:pfam17877 78 SDSDP LK LE A 87
Name
Accession
Description
Interval
E-value
VacB
COG0557 Exoribonuclease R [Transcription];
7-536
1.83e-124
Exoribonuclease R [Transcription];
Pssm-ID: 440323 [Multi-domain]
Cd Length: 711
Bit Score: 385.23
E-value: 1.83e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 7 PIPQ D T RG LS E kslqks AK VV Y ILE KKHS R A a T G ILKLL adknsdlf K KYALFS P S D H R VPR - I YV P LK D CPQ dfmtr P K 85
Cdd:COG0557 113 VTKE D R RG RP E ------ GR VV E ILE RANT R V - V G RFEKE -------- K GFGFVV P D D K R LLQ d I FI P PD D LNG ----- A K 172
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 86 D fa NT L FICR I IDWK E DCNFAL G QLAKS LG QA G EIEP E TEGILTEY G VDF s D F SS EVL ECL p QS LP WTI P PDEVGK RRDL 165
Cdd:COG0557 173 D -- GD L VVVE I TRYP E RRGPPE G RVVEV LG SP G DPGA E ILIAIRKH G LPH - E F PE EVL AEA - EA LP DEV P EADLKG RRDL 248
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 166 R KDCIF TID PST A R D L DDA LACRR L TD G TFEV GVHIADVS YF V PE GS S LD KV A AE R A TSVYL VQK V V PMLP RL L CEE LCS 245
Cdd:COG0557 249 R DLPLV TID GED A K D F DDA VSAEK L DN G GWRL GVHIADVS HY V RP GS A LD RE A RK R G TSVYL PDR V I PMLP ER L SNG LCS 328
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 246 LNP MT D K L TF S VIWKLTPE G KILEEW F G R TI IRS CTK L S Y DHA Q SMIENPT E KIP EE E lppispehsv EEVHQAVLN L HS 325
Cdd:COG0557 329 LNP GE D R L AM S CEMEIDAK G EVVSYE F Y R SV IRS DAR L T Y EEV Q AILDGKD E ELR EE Y ---------- ADLVPMLEE L YE 398
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 326 I AK Q LR RQ R FVD GA LRL D QLKLAFT LD h E T G L P QGCHIY E YR D SN KL V EEFMLLAN M AVA HKIFRT fp EQAL L R R - H PP P 404
Cdd:COG0557 399 L AK I LR KA R EKR GA IDF D LPETKII LD - E E G K P EDIVPR E RN D AH KL I EEFMLLAN E AVA EFLEKL -- KLPF L Y R v H EE P 475
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 405 QTKM L SD L V EF CDQM GL PM --- D VSSAGA L N K s L TKTFGDDKYS lark E V L TNMYS R P M QM A L Y fcsgmlq DQ E QFR H YA 481
Cdd:COG0557 476 DPEK L EA L R EF LANL GL KL kgg D EPTPKD L Q K - L LEQVKGRPEE ---- E L L NTLLL R S M KQ A V Y ------- SP E NIG H FG 543
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 1720354361 482 L NVPL YTHFTSPIRR FA D VI VHR L L A A A L G --- YSEQPDVEPDT L QKQ A D HC NDR - R M A 536
Cdd:COG0557 544 L ALEA YTHFTSPIRR YP D LL VHR A L K A Y L E gkr SPGLQEYLEEE L EEI A E HC SET e R R A 602
RNB
pfam00773 RNB domain; This domain is the catalytic domain of ribonuclease II.
162-510
6.88e-115
RNB domain; This domain is the catalytic domain of ribonuclease II.
Pssm-ID: 459934 [Multi-domain]
Cd Length: 314
Bit Score: 346.96
E-value: 6.88e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 162 R R DLR KDCIF TIDP ST A R DLDDA LACRR L TD G TFEV GVHIADVS YF VP E GS S LD KV A AE R A TSVYL VQK V V PMLP RL L CE 241
Cdd:pfam00773 1 R K DLR DLPFI TIDP AD A K DLDDA ISVEK L PN G GYRL GVHIADVS HY VP P GS P LD RE A RK R G TSVYL PDR V I PMLP EK L SN 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 242 E LCSLNP MT D K L TF SV IWKLTPE G KILEEWFGRTI IRS CTK L S Y DHAQSMI E NPTEKIPEEE L ppispehsveev HQAVL 321
Cdd:pfam00773 81 D LCSLNP GE D R L AL SV EITIDAD G EVTSYEIYPSV IRS KAR L T Y EEVDDLL E GKDAEKDKPD L ------------ AEDLR 148
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 322 N L HSI AK Q LR RQ R FVD GAL R LD QLKLAFT LD H E T gl PQGCH I Y E YR D SNK L V EEFMLLAN M AVA HKI f RTFPEQ AL L R R H 401
Cdd:pfam00773 149 L L YEL AK I LR AK R LQR GAL D LD TPENKLI LD E E G -- VIDIL I Q E RT D AHS L I EEFMLLAN E AVA RHL - QELGIP AL Y R V H 225
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 402 P P P QTKM L SD L VEFCDQMGLPM dvssag A L N KSL T K TFG D dkyslar KEV L TNMYS R P M QM A L Y F csgmlqd Q E QFR H YA 481
Cdd:pfam00773 226 P E P DLEK L NS L IKLLQLLPDDK ------ G L S KSL E K IKD D ------- ERL L SILLL R T M PR A E Y S ------- P E PLG H FG 285
330 340
....*....|....*....|....*....
gi 1720354361 482 L NVPL YTHFTSPIRR FA D V IVHR L L A A A L 510
Cdd:pfam00773 286 L GLDI YTHFTSPIRR YP D L IVHR Q L K A L L 314
RNB
smart00955 This domain is the catalytic domain of ribonuclease II;
162-511
4.46e-106
This domain is the catalytic domain of ribonuclease II;
Pssm-ID: 214935 [Multi-domain]
Cd Length: 286
Bit Score: 323.06
E-value: 4.46e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 162 R R DLR KDCI FTIDP ST A R D L DDA LACRR L TD G TFEV GVHIADVS YF V PE GS S LD KV A AE R A TSVYL VQK V V PMLP RL L CE 241
Cdd:smart00955 1 R V DLR DLPL FTIDP ED A K D I DDA VSVEK L DN G GYRL GVHIADVS HY V KP GS A LD RE A RK R G TSVYL PDR V I PMLP EE L SN 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 242 E LCSLNP MT D K L TF SV IWK L TPE G - K IL EEW F G R TI IRS CTK L S Y DHAQSMI E N ptekipeeelppispehsveevhqav 320
Cdd:smart00955 81 G LCSLNP GE D R L AL SV EMT L DAD G g E IL DYE F Y R SV IRS KAR L T Y EEVDAIL E K -------------------------- 134
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 321 lnlhsiakqlrrqrfvdgalrldqlkla FT LD H E t G LPQGCHIY E YR D SNK LVEEFM L LAN M AVA HKIFRTFP e QA L L R R 400
Cdd:smart00955 135 ---------------------------- IV LD E E - G KIEDIVPR E RN D AHS LVEEFM I LAN E AVA RFLAKNGI - PG L Y R V 184
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 401 H PP P QTKM L SD - L V EF CDQM GL PM - DVSSAG AL N K S L T K TFGDDK yslar KEV L TNMYS R P M QM A L Y FCSG mlqdqeq FR 478
Cdd:smart00955 185 H EG P DPEK L AE l L K EF LALL GL LL l GGDGPK AL A K L L E K IRDSPE ----- ERL L ELLLL R S M PH A E Y SVDN ------- SG 252
330 340 350
....*....|....*....|....*....|...
gi 1720354361 479 H YA L NVPL YTHFTSPIRR FA D V IVHR L L A AAL G 511
Cdd:smart00955 253 H FG L ALDA YTHFTSPIRR YP D L IVHR Q L K AAL R 285
RNase_R
TIGR02063 ribonuclease R; This family consists of an exoribonuclease, ribonuclease R, also called VacB. ...
22-533
3.82e-99
ribonuclease R; This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA]
Pssm-ID: 273947 [Multi-domain]
Cd Length: 709
Bit Score: 319.22
E-value: 3.82e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 22 KS A K V VY ILE KKHSRAATGILKL ladknsdlf KKYALFS P S D H R VP - R I YV P LKDC pqdfm TRPKD fa NTLFICR I IDWK 100
Cdd:TIGR02063 123 FE A R V IK ILE RANDQIVGTFYIE --------- NGIGFVI P D D K R IY l D I FI P PEQI ----- LGAEE -- GDKVLVE I TKYP 186
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 101 EDCNF A L G QLAKS LG Q A GEIEPETEG I LTEY G VDF s D F SS EVL E c LPQSL P WTI P PD E VGK R R DLR KDCIF TID PST A R D 180
Cdd:TIGR02063 187 DRNRP A I G KVVEI LG H A DDPGIDILI I IRKH G IPY - E F PE EVL D - EAAKI P EEV P EE E IKG R K DLR DLPFV TID GED A K D 264
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 181 L DDA LACRR L T DG TFEV GV H IADVS YF V P EGS S LDK V A AE R A TSVYL VQK V V PMLP RL L CEEL CSLNP MT D K LT F S VIWK 260
Cdd:TIGR02063 265 F DDA VYVEK L K DG NYKL GV A IADVS HY V R EGS A LDK E A LK R G TSVYL PDR V I PMLP ER L SNGI CSLNP NE D R LT L S CEME 344
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 261 LTPE G KILEEW F GRTI I R S CTK L S Y DHAQSM IE N pt EKIPEEEL PP ISPE hsveevhqa VL NL HSIA K Q LR RQ R FVD GA L 340
Cdd:TIGR02063 345 IDKK G RVKKYE F YEAV I N S HAR L T Y NQVNDI IE G -- KDALDKKE PP LKEM --------- LK NL FELY K I LR KK R KKR GA I 413
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 341 RL D QLKLAFT LD h E T G L P QGCHIY E YR D SN KL V EEFM LL AN MA VA HKIFRT f PEQALL R R H PP P QTKM L SD L V EF CDQM G 420
Cdd:TIGR02063 414 DF D SKEAKII LD - E N G K P IDIVPR E RG D AH KL I EEFM IA AN ET VA EHLEKA - KLPFIY R V H ER P SEEK L QN L R EF LKTL G 491
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 421 LPMDVSSA ----- GALN K S L T K TF G DDKYS L ARKEV L tnmys R P MQ M A L Y fcsgmlq DQ E QFR H YA L NVPL YTHFTSPIR 495
Cdd:TIGR02063 492 ITLKGGTS dkpqp KDFQ K L L E K VK G RPEEE L INTVL L ----- R S MQ Q A K Y ------- SP E NIG H FG L ALEY YTHFTSPIR 559
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 1720354361 496 R FA D V IVHRL LAA AL G ------ YSEQPDVEPDT L QKQ A D H CNDR 533
Cdd:TIGR02063 560 R YP D L IVHRL IKK AL F ggentt TEKEREYLEAK L EEI A E H SSKT 603
3_prime_RNase
TIGR00358 VacB and RNase II family 3'-5' exoribonucleases; This model is defined to identify a pair of ...
6-534
6.63e-69
VacB and RNase II family 3'-5' exoribonucleases; This model is defined to identify a pair of paralogous 3-prime exoribonucleases in E. coli, plus the set of proteins apparently orthologous to one or the other in other eubacteria. VacB was characterized originally as required for the expression of virulence genes, but is now recognized as the exoribonuclease RNase R (Rnr). Its paralog in E. coli and H. influenzae is designated exoribonuclease II (Rnb). Both are involved in the degradation of mRNA, and consequently have strong pleiotropic effects that may be difficult to disentangle. Both these proteins share domain-level similarity (RNB, S1) with a considerable number of other proteins, and full-length similarity scoring below the trusted cutoff to proteins associated with various phenotypes but uncertain biochemistry; it may be that these latter proteins are also 3-prime exoribonucleases. [Transcription, Degradation of RNA]
Pssm-ID: 273033 [Multi-domain]
Cd Length: 654
Bit Score: 236.92
E-value: 6.63e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 6 T P IP Q DT RG lseksl QKS A K V VY ILE KKHS R AATGI L klladknsdl FKKYAL F SPS D H rv PRIY VPLK d C P QD fm TRPK 85
Cdd:TIGR00358 60 C P LS Q PQ RG ------ RFE A E V ER ILE PALT R FVGKF L ---------- GENDFG F VVP D D -- PRIY LDII - V P KA -- SVKN 118
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 86 DF A - NTLFICRIIDWKEDC N FAL G QLAKS LG QAGEIEPETEGI L TEYGVD F SD fs SEVL E CLPQS L PWTIPPDEVGK R R D 164
Cdd:TIGR00358 119 EL A e GDKVVVELTEYPLRR N LFY G EITQI LG NNDDPLIPWWVT L ARHEIP F EF -- PDGV E QQAAK L QFDVDEQAKKY R E D 196
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 165 L RKDCIF TID PST A R DLDDA LACRR L T DG TFEVG V H IADVSY F V P E G S S LDK V A AE R AT SVYL VQK V V PMLP RL L CEE LC 244
Cdd:TIGR00358 197 L TDLAFV TID GAD A K DLDDA VYVKK L P DG GWKLY V A IADVSY Y V A E N S P LDK E A KH R GF SVYL PGF V I PMLP EE L SNG LC 276
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 245 SLNP MT D K L TFSVIWKLTPE G K I LEEW F GRTI I R S CTK L S YD HAQSMI EN ptekip EE EL P P ISPE h S VE EVHQ avln LH 324
Cdd:TIGR00358 277 SLNP NE D R L VLVCEMTISAQ G R I TDNE F YPAT I E S KAR L T YD KVNDWL EN ------ DD EL Q P EYET - L VE QLKA ---- LH 345
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 325 SIAKQ L RRQ R FVD G ALRLDQLKLA F TL D h E T G LPQGCHIYEY R DSN K LV EE F M LL AN MAV A h KIFRTFPEQALL R R HP P P 404
Cdd:TIGR00358 346 QLSQA L GEW R HKR G LIDFEHPETK F IV D - E E G RVIDIVAEVR R IAE K II EE A M IV AN ICA A - RFLHNHKVPGIY R V HP G P 423
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 405 QT K M L SD L V EF CDQM GL PMDVSS A GALNKS ltktfgd D KYSLA R K ------- E V L TNMYS R PMQM A L Y fcsgmlq DQ E QF 477
Cdd:TIGR00358 424 SK K K L QS L L EF LAEL GL TLPGGN A ENVTTL ------- D GACWL R E vkdrpey E I L VTRLL R SLSQ A E Y ------- SP E PL 489
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720354361 478 R H YA L NVPL Y T HFTSPIRR FA D VIV HRL LA A A L g YS EQ P D V E PDTL Q ---- KQ A D HC N D RR 534
Cdd:TIGR00358 490 G H FG L GLEH Y A HFTSPIRR YP D LTN HRL IK A V L - AK EQ T D T E RYQP Q dell QI A E HC S D TE 549
PRK11642
PRK11642 ribonuclease R;
156-542
2.13e-41
ribonuclease R;
Pssm-ID: 236944 [Multi-domain]
Cd Length: 813
Bit Score: 161.45
E-value: 2.13e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 156 P D E VGKR R - DLR KDCIF TID PST ARD L DDA LA C RRLTD G TFEVG V H IADVSY F V PEGSS LD KV A AE R A TSVY LVQK VVPM 234
Cdd:PRK11642 253 P E E AKAG R v DLR DLPLV TID GED ARD F DDA VY C EKKRG G GWRLW V A IADVSY Y V RPPTP LD RE A RN R G TSVY FPSQ VVPM 332
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 235 LP RL L CEE LCSLNP MT D K L TFSVIWKLTPE G KILEEW F GRTIIR S CTK L S Y DHAQSMIEN p TEKIP E EEL P PISP ehs V E 314
Cdd:PRK11642 333 LP EV L SNG LCSLNP QV D R L CMVCEMTISSK G RLTGYK F YEAVMS S HAR L T Y TKVWHILQG - DQDLR E QYA P LVKH --- L E 408
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 315 E V H qavl NL HSIAKQL R RQ R fvd G ALRLDQLKLA F TLDH E TGLPQ g CHIYEYR D SN KL V EE F M L LAN MAV A h KIFRTFP E 394
Cdd:PRK11642 409 E L H ---- NL YKVLDKA R EE R --- G GISFESEEAK F IFNA E RRIER - IEQTQRN D AH KL I EE C M I LAN ISA A - RFVEKAK E 479
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 395 Q AL L R R H PP P Q T KMLSDLVEFCDQM GL pmdvs SAGAL NK SLTKTFGDDKY S L A RK --- E V L TN M YS R P M QM A L Y fcsgml 471
Cdd:PRK11642 480 P AL F R I H DK P S T EAITSFRSVLAEL GL ----- ELPGG NK PEPRDYAELLE S V A DR pda E M L QT M LL R S M KQ A I Y ------ 548
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 472 q D Q E QFR H YA L NVPL Y T HFTSPIRR FA D VIV HR ---- LLA AAL G YSE -------- QPDV E p DT LQ k QAD HC N drr M ASK R 539
Cdd:PRK11642 549 - D P E NRG H FG L ALQS Y A HFTSPIRR YP D LSL HR aiky LLA KEQ G HKG nttetggy HYSM E - EM LQ - LGQ HC S --- M TER R 622
...
gi 1720354361 540 VQ E 542
Cdd:PRK11642 623 AD E 625
Rnb
COG4776 Exoribonuclease II [Transcription];
151-536
3.39e-36
Exoribonuclease II [Transcription];
Pssm-ID: 443808 [Multi-domain]
Cd Length: 644
Bit Score: 144.61
E-value: 3.39e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 151 P W TIP p DE VGK R R DL RKDCIF TID PSTAR D L DDAL ACRR L TD G TFEVG V H IAD VSYFV PEGS S LDK V A AE RA TSV YL VQK 230
Cdd:COG4776 180 E W ELL - DE GLE R E DL TALPFV TID SESTE D M DDAL YIEK L EN G GWKLT V A IAD PTAYI PEGS E LDK E A RQ RA FTN YL PGF 258
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 231 VV PMLPR L L CEE LCSL NPMTDKLTFSVIWKLTPE G K I LE -- E W F GRT i IRS CT KL S YD HAQSMI E NPT E KI PE E elppis 308
Cdd:COG4776 259 NI PMLPR E L SDD LCSL KENEKRPALVCRVTIDAD G S I GD di E F F AAW - IRS KA KL A YD NVSDWL E GKG E WQ PE N ------ 331
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 309 pehsv EE VHQAVLN LH SI A k QL R R Q RFVDG AL RL - D QLKLA F T LD h E T G LPQGC H IYEY R DS N KL VEE F M LL AN MAV A HK 387
Cdd:COG4776 332 ----- EE IAEQIRL LH QF A - LA R S Q WRQQH AL VF k D RPDYR F E LD - E K G NVLDI H AEPR R IA N RI VEE A M IA AN ICA A RV 404
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 388 -------- IF RT --- F - PE ----- QA LL RR H PPPQTK - M L SD L VE FC d QMGLPM D VSSAGA L NKS L TK -- TF GDDK ysla 447
Cdd:COG4776 405 lrehlgfg IF NV hsg F d PE kleqa VE LL AE H GIEFDP e Q L LT L EG FC - ALRREL D AQPTSY L DSR L RR fq TF AEIS ---- 479
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 448 rkevltnmysrpmqmalyfcsgmlqd Q E QFR H YA L NVPL Y THF TSPIR RFA D VIV HRL LA A AL gy SE QP DVE PD -- TLQK 525
Cdd:COG4776 480 -------------------------- T E PGP H FG L GLDA Y ATW TSPIR KYG D MVN HRL IK A VI -- LG QP AEK PD ee LTER 531
410
....*....|.
gi 1720354361 526 Q A DHCNDR RMA 536
Cdd:COG4776 532 L A ERRRLN RMA 542
PRK05054
PRK05054 exoribonuclease II; Provisional
151-540
1.81e-35
exoribonuclease II; Provisional
Pssm-ID: 179920 [Multi-domain]
Cd Length: 644
Bit Score: 142.32
E-value: 1.81e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 151 P W TIP p DE VGK R R DL RKDCIF TID PSTAR D L DDAL ACRR L T DG TFEVG V H IAD VSYFVP EGS S LDK V A AE RA TSV YL VQK 230
Cdd:PRK05054 180 A W EML - DE GLE R E DL TALDFV TID SASTE D M DDAL YVEK L P DG GLQLT V A IAD PTAYIA EGS K LDK A A RQ RA FTN YL PGF 258
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 231 VV PMLPR L L CEE LCSL N P MTDKLTFSVIWKLTPE G K I LEE -- W F GRT i I R S CT KL S YD HAQSMI EN PTEKI PE E elppis 308
Cdd:PRK05054 259 NI PMLPR E L SDD LCSL R P NERRPALACRVTIDAD G T I EDD ir F F AAW - I E S KA KL A YD NVSDWL EN GGDWQ PE S ------ 331
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 309 pehsv E EVHQAVLN LH SIA k QL R RQ - R FVDGALRL D QLKLA F T L D h E T G LPQGCHIYEY R DS N KL VEE F M LL AN MAV A H - 386
Cdd:PRK05054 332 ----- E AIAEQIRL LH QFC - LA R SE w R KQHALVFK D RPDYR F E L G - E K G EVLDIVAEPR R IA N RI VEE S M IA AN ICA A R v 404
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 387 ------- K I FRT ------- FP EQA -- LL RR H PPPQT - KM L SD L VE FC d QMGLPM D VSSA G A L NKSLTK -- T F GDDKYSLA 447
Cdd:PRK05054 405 lrdklgf G I YNV hsgfdpa NA EQA va LL KE H GLHFD a EE L LT L EG FC - KLRREL D AQPT G Y L DSRIRR fq S F AEISTEPG 483
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 448 rkevltnmysr P mqmalyfcsgmlqdqeqfr H YA L NVPL Y THF TSPIR RFA D V I V HRLL A A ALGYSEQPDVEPDTLQKQ A 527
Cdd:PRK05054 484 ----------- P ------------------- H FG L GLEA Y ATW TSPIR KYG D M I N HRLL K A VIKGETAERPQDEITVQL A 533
410
....*....|...
gi 1720354361 528 DHCNDR RMA SKR V 540
Cdd:PRK05054 534 ERRRLN RMA ERD V 546
Dis3l2_C_term
pfam17877 DIS3-like exonuclease 2 C terminal; This is the C-terminal S1 domain found in Dis3L2 proteins. ...
557-646
2.46e-31
DIS3-like exonuclease 2 C terminal; This is the C-terminal S1 domain found in Dis3L2 proteins. Dis3L2 belongs to the RNase II/R 3-5 exonuclease superfamily, which includes the catalytic subunit of the RNA exosome in yeast and in humans.
Pssm-ID: 465547
Cd Length: 87
Bit Score: 116.98
E-value: 2.46e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720354361 557 GPLE S EA M V M GVL NQA FDVL VLRF G VQ KR I Y CNA L A L RSYS F Q K V G K kpe LTL V W EPDDLEEEPTQQVITIF SLV D VVL Q 636
Cdd:pfam17877 1 GPLE T EA V V L GVL DSS FDVL IPEY G IE KR V Y LDQ L P L KKFE F D K T G V --- LTL Y W KKGVPSSAYVPEDERFS SLV V VVL K 77
90
....*....|
gi 1720354361 637 AEATA LK YS A 646
Cdd:pfam17877 78 SDSDP LK LE A 87
OB_Dis3
pfam17849 Dis3-like cold-shock domain 2 (CSD2); This domain has an OB fold and is found in the Dis3l2 ...
56-132
8.80e-31
Dis3-like cold-shock domain 2 (CSD2); This domain has an OB fold and is found in the Dis3l2 protein. This domain along with CSD1 binds to RNA.
Pssm-ID: 436091 [Multi-domain]
Cd Length: 77
Bit Score: 115.01
E-value: 8.80e-31
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720354361 56 Y A LF S P S D H R V PRI YV P L K DC P QD F MTR P K D FANT LF ICR I I DW K E DCNFA LG QLA K S LG QA G E IE P ETE G IL T E Y G 132
Cdd:pfam17849 1 Y V LF V P R D K R I PRI RI P T K SA P EE F LEN P E D LEGK LF VVK I D DW P E NSRYP LG HIV K V LG EI G D IE T ETE A IL L E N G 77
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
