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Conserved domains on  [gi|1820969811|ref|XP_032750343|]
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40S ribosomal protein S5 [Rattus rattus]

Protein Classification

40S ribosomal protein S5( domain architecture ID 10201903)

40S ribosomal protein S5

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
uS7_Eukaryote cd14867
Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 18-204 2.16e-143

Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Eukaryotic RPS7 (also named RPS5) have variable N-terminal regions that affect the efficiency of initiation translation process by impacting small ribosomal subunit to function. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


:

Pssm-ID: 271246  Cd Length: 185  Bit Score: 396.92  E-value: 2.16e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820969811  18 KLFGKWSTDDVQINDISLQDYIAVKekYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAF 97
Cdd:cd14867     1 KLFGKWSYDDVEVKDPSLKDYINLK--YPVYVPHTAGRYQKKRFRKAQCPIVERLINSLMMHGRNTGKKLMAYRIVKHAF 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820969811  98 EIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADEL 177
Cdd:cd14867    79 EIIHLLTGKNPIQVLVDAIENSGPREDTTRIGYGGTVRRQAVDVSPLRRVNQALRLIATGAREAAFRNIKSIAECLADEL 158

                         170       180
                  ....*....|....*....|....*..
gi 1820969811 178 INAAKGSSNSYAIKKKDELERVAKSNR 204
Cdd:cd14867   159 INAAKGSSNSYAIKKKDELERVAKSNR 185
 
Name Accession Description Interval E-value
uS7_Eukaryote cd14867
Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 18-204 2.16e-143

Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Eukaryotic RPS7 (also named RPS5) have variable N-terminal regions that affect the efficiency of initiation translation process by impacting small ribosomal subunit to function. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271246  Cd Length: 185  Bit Score: 396.92  E-value: 2.16e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820969811  18 KLFGKWSTDDVQINDISLQDYIAVKekYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAF 97
Cdd:cd14867     1 KLFGKWSYDDVEVKDPSLKDYINLK--YPVYVPHTAGRYQKKRFRKAQCPIVERLINSLMMHGRNTGKKLMAYRIVKHAF 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820969811  98 EIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADEL 177
Cdd:cd14867    79 EIIHLLTGKNPIQVLVDAIENSGPREDTTRIGYGGTVRRQAVDVSPLRRVNQALRLIATGAREAAFRNIKSIAECLADEL 158

                         170       180
                  ....*....|....*....|....*..
gi 1820969811 178 INAAKGSSNSYAIKKKDELERVAKSNR 204
Cdd:cd14867   159 INAAKGSSNSYAIKKKDELERVAKSNR 185
PTZ00091 PTZ00091
40S ribosomal protein S5; Provisional
 14-204 5.09e-130

40S ribosomal protein S5; Provisional


Pssm-ID: 185439  Cd Length: 193  Bit Score: 363.32  E-value: 5.09e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820969811  14 TPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIV 93
Cdd:PTZ00091    3 ANEPKLFGKWSYDDVQVSDLSLKDYIAVTTKASVFVPHTAGRYQKKRFRKAQCPIVERLVNSLMFHGRNNGKKLLAVRIV 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820969811  94 KHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECL 173
Cdd:PTZ00091   83 KHAFEIIHLLTDKNPLQVLVDAVQNGGPREDSTRVGSGGVVRRQAVDVSPLRRVNQAIYLICKGAREAAFRNIKTIAECL 162

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1820969811 174 ADELINAAKGSSNSYAIKKKDELERVAKSNR 204
Cdd:PTZ00091  163 ADEIINASKESSNSYAIKKKDEVERVAKANR 193
uS7_euk_arch TIGR01028
ribosomal protein uS7, eukaryotic/archaeal; This model describes the members from the ...
 16-204 4.57e-113

ribosomal protein uS7, eukaryotic/archaeal; This model describes the members from the eukaryotic cytosol and the Archaea of the family that includes ribosomal protein uS7 (previously S5 in yeast and human). A separate model describes bacterial and organellar S7. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273402  Cd Length: 186  Bit Score: 320.18  E-value: 4.57e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820969811  16 DIKLFGKWSTDDVQINDISLQDYIAVKEKYakyLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKH 95
Cdd:TIGR01028   1 EIKVFGKWSTEEVEVKDPSLKDYINLEPIY---VPHTAGRHAKKQFRKAKVPIVERLINKVMRSGRNNGKKLKAYRIVKE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820969811  96 AFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLAD 175
Cdd:TIGR01028  78 AFEIIEKRTKKNPIQVLVDAIENAGPREDTTRVGYGGIAYRQAVDISPLRRVDQALRNIALGAREAAFRNKKSIAECLAE 157

                         170       180
                  ....*....|....*....|....*....
gi 1820969811 176 ELINAAKGSSNSYAIKKKDELERVAKSNR 204
Cdd:TIGR01028 158 EIILAANGDSKSYAIKKKEELERVAKSAR 186
Ribosomal_S7 pfam00177
Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 ...
 64-204 7.28e-60

Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.


Pssm-ID: 425505  Cd Length: 132  Bit Score: 183.35  E-value: 7.28e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820969811  64 AQCPIVERLTNSMMMHGrnngKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSP 143
Cdd:pfam00177   1 YNSPLVEKLINRLMRDG----KKSLAERIVYGAFDIIEEKTGKNPLEVFVKALENVKPRVEVKSRRVGGATYQVPVEVRP 76

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1820969811 144 LRRVNQAIWLLCTGAReaaFRNIKTIAECLADELINAAKGSsnSYAIKKKDELERVAKSNR 204
Cdd:pfam00177  77 ERRVALALRWIIEAAR---KRSEKSMAERLANELIDAANGR--GAAVKKKEETHRMAEANR 132
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 63-204 5.11e-19

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439819  Cd Length: 156  Bit Score: 79.72  E-value: 5.11e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820969811  63 KAQCPIVERLTNSMMMHGrnngKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPR-E-DSTRIGraGTVRRQAVD 140
Cdd:COG0049    17 KYNSVLVTKFINKIMLDG----KKSVAEKIVYGALDIIEEKTGEDPLEVFEKALENVKPLvEvKSRRVG--GATYQVPVE 90

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1820969811 141 VSPLRRVNQAI-WLLcTGAREaafRNIKTIAECLADELINAAKGSSNsyAIKKKDELERVAKSNR 204
Cdd:COG0049    91 VRPERRQALAMrWII-DAARK---RKEKTMAERLANELLDASNNRGA--AVKKREDTHKMAEANK 149
 
Name Accession Description Interval E-value
uS7_Eukaryote cd14867
Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 18-204 2.16e-143

Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Eukaryotic RPS7 (also named RPS5) have variable N-terminal regions that affect the efficiency of initiation translation process by impacting small ribosomal subunit to function. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271246  Cd Length: 185  Bit Score: 396.92  E-value: 2.16e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820969811  18 KLFGKWSTDDVQINDISLQDYIAVKekYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAF 97
Cdd:cd14867     1 KLFGKWSYDDVEVKDPSLKDYINLK--YPVYVPHTAGRYQKKRFRKAQCPIVERLINSLMMHGRNTGKKLMAYRIVKHAF 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820969811  98 EIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADEL 177
Cdd:cd14867    79 EIIHLLTGKNPIQVLVDAIENSGPREDTTRIGYGGTVRRQAVDVSPLRRVNQALRLIATGAREAAFRNIKSIAECLADEL 158

                         170       180
                  ....*....|....*....|....*..
gi 1820969811 178 INAAKGSSNSYAIKKKDELERVAKSNR 204
Cdd:cd14867   159 INAAKGSSNSYAIKKKDELERVAKSNR 185
PTZ00091 PTZ00091
40S ribosomal protein S5; Provisional
 14-204 5.09e-130

40S ribosomal protein S5; Provisional


Pssm-ID: 185439  Cd Length: 193  Bit Score: 363.32  E-value: 5.09e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820969811  14 TPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIV 93
Cdd:PTZ00091    3 ANEPKLFGKWSYDDVQVSDLSLKDYIAVTTKASVFVPHTAGRYQKKRFRKAQCPIVERLVNSLMFHGRNNGKKLLAVRIV 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820969811  94 KHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECL 173
Cdd:PTZ00091   83 KHAFEIIHLLTDKNPLQVLVDAVQNGGPREDSTRVGSGGVVRRQAVDVSPLRRVNQAIYLICKGAREAAFRNIKTIAECL 162

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1820969811 174 ADELINAAKGSSNSYAIKKKDELERVAKSNR 204
Cdd:PTZ00091  163 ADEIINASKESSNSYAIKKKDEVERVAKANR 193
uS7_euk_arch TIGR01028
ribosomal protein uS7, eukaryotic/archaeal; This model describes the members from the ...
 16-204 4.57e-113

ribosomal protein uS7, eukaryotic/archaeal; This model describes the members from the eukaryotic cytosol and the Archaea of the family that includes ribosomal protein uS7 (previously S5 in yeast and human). A separate model describes bacterial and organellar S7. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273402  Cd Length: 186  Bit Score: 320.18  E-value: 4.57e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820969811  16 DIKLFGKWSTDDVQINDISLQDYIAVKEKYakyLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKH 95
Cdd:TIGR01028   1 EIKVFGKWSTEEVEVKDPSLKDYINLEPIY---VPHTAGRHAKKQFRKAKVPIVERLINKVMRSGRNNGKKLKAYRIVKE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820969811  96 AFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLAD 175
Cdd:TIGR01028  78 AFEIIEKRTKKNPIQVLVDAIENAGPREDTTRVGYGGIAYRQAVDISPLRRVDQALRNIALGAREAAFRNKKSIAECLAE 157

                         170       180
                  ....*....|....*....|....*....
gi 1820969811 176 ELINAAKGSSNSYAIKKKDELERVAKSNR 204
Cdd:TIGR01028 158 EIILAANGDSKSYAIKKKEELERVAKSAR 186
PRK04027 PRK04027
30S ribosomal protein S7P; Reviewed
 8-204 1.37e-94

30S ribosomal protein S7P; Reviewed


Pssm-ID: 235204  Cd Length: 195  Bit Score: 273.70  E-value: 1.37e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820969811   8 TPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYakyLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKL 87
Cdd:PRK04027    2 ESEEAEPMEIKLFGKWDVEEVEVRDPSLKRYINLTPVL---VPHTGGRHAKKQFGKAEVPIVERLINKLMRTERNTGKKQ 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820969811  88 MTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIK 167
Cdd:PRK04027   79 KAYNIVKEAFEIIEKRTKQNPIQVLVDAIENAAPREETTRIKYGGISYPKAVDVSPQRRVDLALRFIAEGARQASFKNKK 158

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1820969811 168 TIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204
Cdd:PRK04027  159 SIEEALAEEIIAAANNDPKSYAVRKKEEIERVAKSAR 195
Ribosomal_S7 pfam00177
Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 ...
 64-204 7.28e-60

Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.


Pssm-ID: 425505  Cd Length: 132  Bit Score: 183.35  E-value: 7.28e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820969811  64 AQCPIVERLTNSMMMHGrnngKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSP 143
Cdd:pfam00177   1 YNSPLVEKLINRLMRDG----KKSLAERIVYGAFDIIEEKTGKNPLEVFVKALENVKPRVEVKSRRVGGATYQVPVEVRP 76

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1820969811 144 LRRVNQAIWLLCTGAReaaFRNIKTIAECLADELINAAKGSsnSYAIKKKDELERVAKSNR 204
Cdd:pfam00177  77 ERRVALALRWIIEAAR---KRSEKSMAERLANELIDAANGR--GAAVKKKEETHRMAEANR 132
uS7_Bacteria cd14869
Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 63-204 8.33e-24

Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Prokaryotic RPS7 is lacking the variable N-terminal region of eukaryotic RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271248  Cd Length: 138  Bit Score: 91.74  E-value: 8.33e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820969811  63 KAQCPIVERLTNSMMMHGrnngKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPRED--STRIGraGTVRRQAVD 140
Cdd:cd14869     6 KYNSVLVSKFINKLMKDG----KKSVAEKIVYDALEIIKKKTGKDPLEVFEKALENVKPLVEvrSRRVG--GATYQVPVE 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1820969811 141 VSPLRRVNQAI-WLLcTGAREaafRNIKTIAECLADELINAAKGSSNsyAIKKKDELERVAKSNR 204
Cdd:cd14869    80 VRPERRQSLALrWII-EAARK---RKEKSMAEKLAAELLDAANNTGA--AVKKKEDTHKMAEANK 138
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 63-204 5.11e-19

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439819  Cd Length: 156  Bit Score: 79.72  E-value: 5.11e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820969811  63 KAQCPIVERLTNSMMMHGrnngKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPR-E-DSTRIGraGTVRRQAVD 140
Cdd:COG0049    17 KYNSVLVTKFINKIMLDG----KKSVAEKIVYGALDIIEEKTGEDPLEVFEKALENVKPLvEvKSRRVG--GATYQVPVE 90

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1820969811 141 VSPLRRVNQAI-WLLcTGAREaafRNIKTIAECLADELINAAKGSSNsyAIKKKDELERVAKSNR 204
Cdd:COG0049    91 VRPERRQALAMrWII-DAARK---RKEKTMAERLANELLDASNNRGA--AVKKREDTHKMAEANK 149
PRK05302 PRK05302
30S ribosomal protein S7; Validated
 68-204 2.55e-18

30S ribosomal protein S7; Validated


Pssm-ID: 235398  Cd Length: 156  Bit Score: 77.84  E-value: 2.55e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820969811  68 IVERLTNSMMMHGrnngKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPRED--STRIGraGTVRRQAVDVSPLR 145
Cdd:PRK05302   22 LVTKFINKLMLDG----KKSVAEKIVYGALDIIEEKTGKDPLEVFEKALENVKPVVEvkSRRVG--GATYQVPVEVRPER 95

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820969811 146 RVNQAI-WLLcTGAREaafRNIKTIAECLADELINAAKGSSNsyAIKKKDELERVAKSNR 204
Cdd:PRK05302   96 RQALAMrWLV-EAARK---RGEKTMAERLANELLDAANNRGA--AVKKREDTHRMAEANK 149
uS7_Chloroplast cd14871
Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific ...
 71-204 1.62e-16

Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific regulatory roles in chloroplast translation process. uS7, also known as Ribosomal protein (RP)S7, is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The chloroplasts of plants and algae have bacterial ancestry, but it has adopted novel mechanisms in order to execute its roles within a eukaryotic cell. Chloroplast RPS7 is more homologous to bacterial RPS7 than other eukaryotic mitochondrial proteins. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The chloroplast translation regulation is more complex than in bacteria with additional RNA and chloroplast-unique proteins. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271250  Cd Length: 146  Bit Score: 72.69  E-value: 1.62e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820969811  71 RLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPRED--STRIGraGTVRRQAVDVSPLRRVN 148
Cdd:cd14871    13 RLVNMLVNRILKSGKKSLAYRIVYEALKEIKQKTKQDPLEVLEQAIRNVTPLVEvkARRVG--GSTYQVPVEVRSERGTA 90

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1820969811 149 QAI-WLLcTGAREaafRNIKTIAECLADELINAAKGSSNsyAIKKKDELERVAKSNR 204
Cdd:cd14871    91 LAIrWLL-KASRK---RSGRSMASKLANEIIDAAKNTGN--AIRKKEETHRMAEANK 141
rps7 CHL00053
ribosomal protein S7
 71-204 2.34e-16

ribosomal protein S7


Pssm-ID: 176994  Cd Length: 155  Bit Score: 72.61  E-value: 2.34e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820969811  71 RLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPRED--STRIGraGTVRRQAVDVSPLRRVN 148
Cdd:CHL00053   21 RLVNMLVNRILKSGKKSLAYRIVYRALKKIQQKTEKNPLSVLRQAIRNVTPDVEvkARRVG--GSTYQVPIEIGSTRGKA 98

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1820969811 149 QAI-WLLcTGAREAAFRNiktIAECLADELINAAKGSSNsyAIKKKDELERVAKSNR 204
Cdd:CHL00053   99 LAIrWLL-KASRKRSGRN---MAFKLSSELVDAAKGSGN--AIRKKEETHRMAEANR 149
uS7_Mitochondria_Fungi cd14868
Fungal Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP) ...
 67-204 2.24e-14

Fungal Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Fungal and plants mitochondrial RPS7 shows less homology to the mammalian than to bacterial RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271247  Cd Length: 151  Bit Score: 67.21  E-value: 2.24e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820969811  67 PIVERLTNSMMMHGrnngKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGP--REDSTRigRAGTVRRQAVdvsPL 144
Cdd:cd14868    23 PLLEQLTNLIMKHG----KKAKAQRIVSRALLHIHTLTRADPLPLLRQAIDSAAPlvKIKSQK--KGAKNVQVPV---PL 93

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1820969811 145 R---RVNQAI-WLLctgarEAA-FRNIKTIAECLADELINAAKGSSNsyAIKKKDELERVAKSNR 204
Cdd:cd14868    94 NerqRRRKAIkWIL-----EASdKRPGKSFSERLAEEIIAVVEGTSS--ALEKKEQVHKLAVANR 151
uS7_plant cd15484
plant ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part ...
 67-204 1.14e-11

plant ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271251  Cd Length: 147  Bit Score: 60.09  E-value: 1.14e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820969811  67 PIVERLTNSMMMhgrnNGKKLMTVRIVKHAFEII---HLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSP 143
Cdd:cd15484     2 LLIKKFVNFLMK----KGKKTKARTILFKTFHLLkqkQSAQTEDVLVILVTAVENVKPSFEVRKVRIAGTTQLIPAALSP 77

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1820969811 144 LRRVNQAIWLLCTGAREAAFRNIK---TIAECLADELINAAKGSSNsyAIKKKDELERVAKSNR 204
Cdd:cd15484    78 NKQETLAIRWILEAAKKKQRKQSKkrySFAYCLADEILDASKKQGK--ARQKRDELHKLAEANR 139
uS7_Mitochondria_Mammalian cd14870
Mammalian Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein ...
 67-204 7.10e-10

Mammalian Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. MRPS7 shows more homology to bacterial RPS7 than mitochondrial proteins from plants and fungi. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The ribosomes present in mammalian mitochondria have more proteins and low percentage of ribosomal RNA than bacterial ribosomes. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271249  Cd Length: 199  Bit Score: 56.10  E-value: 7.10e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1820969811  67 PIVERLTNsMMMHgrnNGKKLMTVRIVKHAFEII--------HLLTGE-------NPLQVLVNAIINSGPREDSTRIGRA 131
Cdd:cd14870    49 PLVSKFIN-MMMK---KGNKELAREIVEKTLENIkriqlekyHKATDEekesielNPLVIFHKAVENCKPLLGLTSVKRG 124

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1820969811 132 GTVRRQAVDVSPLRRVNQAI-WLLcTGAREAAFRNikTIAECLADELINAAKGSSNsyAIKKKDELERVAKSNR 204
Cdd:cd14870   125 GKTYQVPVPITPNRARFLAMkWLI-EACREKKRKI--RFPEKLARELLDASNNQGK--VVKKKQELHKQCEANR 193
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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