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Conserved domains on  [gi|1907073563|ref|XP_036011518|]
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transcription factor HIVEP2 isoform X1 [Mus musculus]

Protein Classification

C2H2-type zinc finger protein( domain architecture ID 10443094)

Cys2His2 (C2H2)-type zinc finger protein may be involved in transcriptional regulation

CATH:  3.30.160.60
Gene Ontology:  GO:0008270|GO:0003677
PubMed:  11361095|22803940|30718982
SCOP:  4003583

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-H2C2_2 pfam13465
Zinc-finger double domain;
204-228 1.06e-06

Zinc-finger double domain;


:

Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 46.98  E-value: 1.06e-06
                           10        20
                   ....*....|....*....|....*
gi 1907073563  204 LKKHIRSHTGERPYPCIPCGFSFKT 228
Cdd:pfam13465    2 LKRHMRTHTGEKPYKCPECGKSFKS 26
PTZ00449 super family cl33186
104 kDa microneme/rhoptry antigen; Provisional
 2017-2160 2.59e-05

104 kDa microneme/rhoptry antigen; Provisional


The actual alignment was detected with superfamily member PTZ00449:

Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 49.69  E-value: 2.59e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073563 2017 SSSPRDfsPSSYRSS--PGYDSSPCRDNSPKR---YLIPKGDLSPRRHLSPRRDLSPMRHLSPRkeaalRREMSQGDASP 2091
Cdd:PTZ00449   585 PKHPKD--PEEPKKPkrPRSAQRPTRPKSPKLpelLDIPKSPKRPESPKSPKRPPPPQRPSSPE-----RPEGPKIIKSP 657

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907073563 2092 RRHLSPRRPLSPG---KDITARRDLSPRRERRYMTTIRAPSPRRALYPNPPLSMGQYLQTEPIVlgPPNLRR 2160
Cdd:PTZ00449   658 KPPKSPKPPFDPKfkeKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPL--PPKLPR 727
zf-H2C2_2 pfam13465
Zinc-finger double domain;
1797-1822 9.47e-05

Zinc-finger double domain;


:

Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 41.20  E-value: 9.47e-05
                           10        20
                   ....*....|....*....|....*.
gi 1907073563 1797 MLKKHIRTHTDVRPYVCKLCNFAFKT 1822
Cdd:pfam13465    1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 1783-1805 3.28e-04

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


:

Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 39.59  E-value: 3.28e-04
                           10        20
                   ....*....|....*....|...
gi 1907073563 1783 YICEECGIRCKKPSMLKKHIRTH 1805
Cdd:pfam00096    1 YKCPDCGKSFSRKSNLKRHLRTH 23
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 753-929 1.50e-03

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.16  E-value: 1.50e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073563  753 PARPQLPSRSPSLGSEDLPLAADPDKMTdlgkKPPGNVISVIQHTNSLSR-PNSFERSESTEMVACPQDKTPSPAETCDS 831
Cdd:PHA03247  2757 PARPPTTAGPPAPAPPAAPAAGPPRRLT----RPAVASLSESRESLPSPWdPADPPAAVLAPAAALPPAASPAGPLPPPT 2832

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073563  832 EVLEAPVSPEWAPPGD----------GGESGSKPTPSQQVPQHSYHAQPRLVRQHNIQVPeiRVTEE----PDKPEKEKE 897
Cdd:PHA03247  2833 SAQPTAPPPPPGPPPPslplggsvapGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVS--RSTESfalpPDQPERPPQ 2910

                          170       180       190
                   ....*....|....*....|....*....|..
gi 1907073563  898 APTKEPEKPVEEFQWPQRSETLSQLPAEKLPP 929
Cdd:PHA03247  2911 PQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPP 2942
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 189-211 8.35e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


:

Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 35.74  E-value: 8.35e-03
                           10        20
                   ....*....|....*....|...
gi 1907073563  189 YICPYCSRACAKPSVLKKHIRSH 211
Cdd:pfam00096    1 YKCPDCGKSFSRKSNLKRHLRTH 23
 
Name Accession Description Interval E-value
zf-H2C2_2 pfam13465
Zinc-finger double domain;
204-228 1.06e-06

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 46.98  E-value: 1.06e-06
                           10        20
                   ....*....|....*....|....*
gi 1907073563  204 LKKHIRSHTGERPYPCIPCGFSFKT 228
Cdd:pfam13465    2 LKRHMRTHTGEKPYKCPECGKSFKS 26
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 2017-2160 2.59e-05

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 49.69  E-value: 2.59e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073563 2017 SSSPRDfsPSSYRSS--PGYDSSPCRDNSPKR---YLIPKGDLSPRRHLSPRRDLSPMRHLSPRkeaalRREMSQGDASP 2091
Cdd:PTZ00449   585 PKHPKD--PEEPKKPkrPRSAQRPTRPKSPKLpelLDIPKSPKRPESPKSPKRPPPPQRPSSPE-----RPEGPKIIKSP 657

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907073563 2092 RRHLSPRRPLSPG---KDITARRDLSPRRERRYMTTIRAPSPRRALYPNPPLSMGQYLQTEPIVlgPPNLRR 2160
Cdd:PTZ00449   658 KPPKSPKPPFDPKfkeKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPL--PPKLPR 727
zf-H2C2_2 pfam13465
Zinc-finger double domain;
1797-1822 9.47e-05

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 41.20  E-value: 9.47e-05
                           10        20
                   ....*....|....*....|....*.
gi 1907073563 1797 MLKKHIRTHTDVRPYVCKLCNFAFKT 1822
Cdd:pfam13465    1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 1783-1805 3.28e-04

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 39.59  E-value: 3.28e-04
                           10        20
                   ....*....|....*....|...
gi 1907073563 1783 YICEECGIRCKKPSMLKKHIRTH 1805
Cdd:pfam00096    1 YKCPDCGKSFSRKSNLKRHLRTH 23
PHA03247 PHA03247
large tegument protein UL36; Provisional
 753-929 1.50e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.16  E-value: 1.50e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073563  753 PARPQLPSRSPSLGSEDLPLAADPDKMTdlgkKPPGNVISVIQHTNSLSR-PNSFERSESTEMVACPQDKTPSPAETCDS 831
Cdd:PHA03247  2757 PARPPTTAGPPAPAPPAAPAAGPPRRLT----RPAVASLSESRESLPSPWdPADPPAAVLAPAAALPPAASPAGPLPPPT 2832

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073563  832 EVLEAPVSPEWAPPGD----------GGESGSKPTPSQQVPQHSYHAQPRLVRQHNIQVPeiRVTEE----PDKPEKEKE 897
Cdd:PHA03247  2833 SAQPTAPPPPPGPPPPslplggsvapGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVS--RSTESfalpPDQPERPPQ 2910

                          170       180       190
                   ....*....|....*....|....*....|..
gi 1907073563  898 APTKEPEKPVEEFQWPQRSETLSQLPAEKLPP 929
Cdd:PHA03247  2911 PQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPP 2942
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 189-211 8.35e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 35.74  E-value: 8.35e-03
                           10        20
                   ....*....|....*....|...
gi 1907073563  189 YICPYCSRACAKPSVLKKHIRSH 211
Cdd:pfam00096    1 YKCPDCGKSFSRKSNLKRHLRTH 23
 
Name Accession Description Interval E-value
zf-H2C2_2 pfam13465
Zinc-finger double domain;
204-228 1.06e-06

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 46.98  E-value: 1.06e-06
                           10        20
                   ....*....|....*....|....*
gi 1907073563  204 LKKHIRSHTGERPYPCIPCGFSFKT 228
Cdd:pfam13465    2 LKRHMRTHTGEKPYKCPECGKSFKS 26
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 2017-2160 2.59e-05

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 49.69  E-value: 2.59e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073563 2017 SSSPRDfsPSSYRSS--PGYDSSPCRDNSPKR---YLIPKGDLSPRRHLSPRRDLSPMRHLSPRkeaalRREMSQGDASP 2091
Cdd:PTZ00449   585 PKHPKD--PEEPKKPkrPRSAQRPTRPKSPKLpelLDIPKSPKRPESPKSPKRPPPPQRPSSPE-----RPEGPKIIKSP 657

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907073563 2092 RRHLSPRRPLSPG---KDITARRDLSPRRERRYMTTIRAPSPRRALYPNPPLSMGQYLQTEPIVlgPPNLRR 2160
Cdd:PTZ00449   658 KPPKSPKPPFDPKfkeKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPL--PPKLPR 727
zf-H2C2_2 pfam13465
Zinc-finger double domain;
1797-1822 9.47e-05

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 41.20  E-value: 9.47e-05
                           10        20
                   ....*....|....*....|....*.
gi 1907073563 1797 MLKKHIRTHTDVRPYVCKLCNFAFKT 1822
Cdd:pfam13465    1 NLKRHMRTHTGEKPYKCPECGKSFKS 26
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 1783-1805 3.28e-04

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 39.59  E-value: 3.28e-04
                           10        20
                   ....*....|....*....|...
gi 1907073563 1783 YICEECGIRCKKPSMLKKHIRTH 1805
Cdd:pfam00096    1 YKCPDCGKSFSRKSNLKRHLRTH 23
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 2021-2140 3.84e-04

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 45.84  E-value: 3.84e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073563 2021 RDFSPSSYrssPGYDSSPcrdNSPKRYLIPKGDLSPRRHLSPRRDLSPMRHLSPRKEAALrrEMSQGDASPRRHLSPRRP 2100
Cdd:PTZ00449   565 KEHKPSKI---PTLSKKP---EFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELL--DIPKSPKRPESPKSPKRP 636

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 1907073563 2101 LSPGKDITARRDLSPRrerrymtTIRAPSPRRAlyPNPPL 2140
Cdd:PTZ00449   637 PPPQRPSSPERPEGPK-------IIKSPKPPKS--PKPPF 667
PHA03247 PHA03247
large tegument protein UL36; Provisional
 753-929 1.50e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.16  E-value: 1.50e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073563  753 PARPQLPSRSPSLGSEDLPLAADPDKMTdlgkKPPGNVISVIQHTNSLSR-PNSFERSESTEMVACPQDKTPSPAETCDS 831
Cdd:PHA03247  2757 PARPPTTAGPPAPAPPAAPAAGPPRRLT----RPAVASLSESRESLPSPWdPADPPAAVLAPAAALPPAASPAGPLPPPT 2832

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073563  832 EVLEAPVSPEWAPPGD----------GGESGSKPTPSQQVPQHSYHAQPRLVRQHNIQVPeiRVTEE----PDKPEKEKE 897
Cdd:PHA03247  2833 SAQPTAPPPPPGPPPPslplggsvapGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVS--RSTESfalpPDQPERPPQ 2910

                          170       180       190
                   ....*....|....*....|....*....|..
gi 1907073563  898 APTKEPEKPVEEFQWPQRSETLSQLPAEKLPP 929
Cdd:PHA03247  2911 PQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPP 2942
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 2012-2158 2.44e-03

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 43.14  E-value: 2.44e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073563 2012 LSSEPSSSPRDFSPSSYRSSPgydsSPCRDNSPKRYLIPKGDLSPRRHLSPRRDLSP----MRHLSPRKEAALRRE---M 2084
Cdd:PTZ00449   617 LLDIPKSPKRPESPKSPKRPP----PPQRPSSPERPEGPKIIKSPKPPKSPKPPFDPkfkeKFYDDYLDAAAKSKEtktT 692

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073563 2085 SQGDASPRRHLSPRRPLSPGKDITARRDLSPRRERRYMTTIR------APSPRRALYPNPPLSMGQYLQTEPIVLGPPNL 2158
Cdd:PTZ00449   693 VVLDESFESILKETLPETPGTPFTTPRPLPPKLPRDEEFPFEpigdpdAEQPDDIEFFTPPEEERTFFHETPADTPLPDI 772
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 1811-1832 2.95e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 36.89  E-value: 2.95e-03
                           10        20
                   ....*....|....*....|..
gi 1907073563 1811 YVCKLCNFAFKTKGNLTKHMKS 1832
Cdd:pfam00096    1 YKCPDCGKSFSRKSNLKRHLRT 22
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 189-211 8.35e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 35.74  E-value: 8.35e-03
                           10        20
                   ....*....|....*....|...
gi 1907073563  189 YICPYCSRACAKPSVLKKHIRSH 211
Cdd:pfam00096    1 YKCPDCGKSFSRKSNLKRHLRTH 23
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 1997-2141 9.19e-03

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 41.60  E-value: 9.19e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907073563 1997 KDRLDIPSSMDEEAMLSSEPSSSPRDFSPSSyrSSPGYDSSPCRDNSPKrylipKGDLSPRRHLSPRRDLS--------P 2068
Cdd:PTZ00449   491 KSKKKLAPIEEEDSDKHDEPPEGPEASGLPP--KAPGDKEGEEGEHEDS-----KESDEPKEGGKPGETKEgevgkkpgP 563

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907073563 2069 MRHLSPRKEAAL--RREMSQGDASPRRHLSPRRPLSPgkdITARRDLSPRRERRYMTTIRAPSPRRALYPNPPLS 2141
Cdd:PTZ00449   564 AKEHKPSKIPTLskKPEFPKDPKHPKDPEEPKKPKRP---RSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKR 635
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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