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Conserved domains on  [gi|1907082930|ref|XP_036012839|]
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UPF0450 protein C17orf58 homolog isoform X3 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NTR_like super family cl02512
NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in ...
 233-414 1.83e-17

NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the domain plays a role in controlling axon branching in neural development, while the common function of these modules in TIMPs appears to be binding to metzincins. A subset of this family is also known as the C345C domain because it occurs as a C-terminal domain in complement C3, C4 and C5. In C5, the domain interacts with various partners during the formation of the membrane attack complex.


The actual alignment was detected with superfamily member cd03576:

Pssm-ID: 470599  Cd Length: 124  Bit Score: 78.20  E-value: 1.83e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930 233 PETQSCARACSADADEWEAYCASEFAaVNGIVHDVDVLGAGMRLVTLLvdpDGLYKMSRLYITPDGFFFRVHILALDsss 312
Cdd:cd03576     1 PTAALCQQKCRRTGTLESNYCSSEFV-ITGTVISMTRGPGSLHATVSI---IKLYKEGRLAITQAGKTMSVKITVVC--- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930 313 chKPCPEFKpgieipspekaihrvlynatgdlsaaaqlllvtpapnslfkdqalsrashtPGSRYIVMGHIYH-KRRQLP 391
Cdd:cd03576    74 --KQCPLLR---------------------------------------------------RGLNYILMGQVDEeGRGVIP 100

                         170       180
                  ....*....|....*....|...
gi 1907082930 392 SAllQVLRGRLRPGDGLIRGSSS 414
Cdd:cd03576   101 PE--SFVMLYKTKHQKLLAALSN 121
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 95-246 2.43e-06

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.32  E-value: 2.43e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930   95 SPEAPVAERkAPPPHRKPDSRETPGPRAQPLPEfSRRPRAAYAGPRAWPDPRRRKTAPPADNRA---GFRDAVHAPAALP 171
Cdd:PHA03247  2617 LPPDTHAPD-PPPPSPSPAANEPDPHPPPTVPP-PERPRDDPAPGRVSRPRRARRLGRAAQASSppqRPRRRAARPTVGS 2694

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930  172 GPRLAQAENRASPPEDSPRRALSRAVRPPG---ARAASPAHPNRPRAAAQPSG--TPQALSPEDREPETQSCARACSADA 246
Cdd:PHA03247  2695 LTSLADPPPPPPTPEPAPHALVSATPLPPGpaaARQASPALPAAPAPPAVPAGpaTPGGPARPARPPTTAGPPAPAPPAA 2774
 
Name Accession Description Interval E-value
NTR_PCOLCE cd03576
NTR domain, PCOLCE subfamily; Procollagen C-endopeptidase enhancers (PCOLCEs) are ...
 233-414 1.83e-17

NTR domain, PCOLCE subfamily; Procollagen C-endopeptidase enhancers (PCOLCEs) are extracellular matrix proteins that enhance the activity of procollagen C-proteases, by binding to the procollagen I C-peptide. They contain a C-terminal NTR domain, which have been suggested to possess inhibitory functions towards specific serine proteases but not towards metzincins, which are inhibited by the related TIMPs.


Pssm-ID: 239631  Cd Length: 124  Bit Score: 78.20  E-value: 1.83e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930 233 PETQSCARACSADADEWEAYCASEFAaVNGIVHDVDVLGAGMRLVTLLvdpDGLYKMSRLYITPDGFFFRVHILALDsss 312
Cdd:cd03576     1 PTAALCQQKCRRTGTLESNYCSSEFV-ITGTVISMTRGPGSLHATVSI---IKLYKEGRLAITQAGKTMSVKITVVC--- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930 313 chKPCPEFKpgieipspekaihrvlynatgdlsaaaqlllvtpapnslfkdqalsrashtPGSRYIVMGHIYH-KRRQLP 391
Cdd:cd03576    74 --KQCPLLR---------------------------------------------------RGLNYILMGQVDEeGRGVIP 100

                         170       180
                  ....*....|....*....|...
gi 1907082930 392 SAllQVLRGRLRPGDGLIRGSSS 414
Cdd:cd03576   101 PE--SFVMLYKTKHQKLLAALSN 121
PHA03247 PHA03247
large tegument protein UL36; Provisional
 95-246 2.43e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.32  E-value: 2.43e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930   95 SPEAPVAERkAPPPHRKPDSRETPGPRAQPLPEfSRRPRAAYAGPRAWPDPRRRKTAPPADNRA---GFRDAVHAPAALP 171
Cdd:PHA03247  2617 LPPDTHAPD-PPPPSPSPAANEPDPHPPPTVPP-PERPRDDPAPGRVSRPRRARRLGRAAQASSppqRPRRRAARPTVGS 2694

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930  172 GPRLAQAENRASPPEDSPRRALSRAVRPPG---ARAASPAHPNRPRAAAQPSG--TPQALSPEDREPETQSCARACSADA 246
Cdd:PHA03247  2695 LTSLADPPPPPPTPEPAPHALVSATPLPPGpaaARQASPALPAAPAPPAVPAGpaTPGGPARPARPPTTAGPPAPAPPAA 2774
 
Name Accession Description Interval E-value
NTR_PCOLCE cd03576
NTR domain, PCOLCE subfamily; Procollagen C-endopeptidase enhancers (PCOLCEs) are ...
 233-414 1.83e-17

NTR domain, PCOLCE subfamily; Procollagen C-endopeptidase enhancers (PCOLCEs) are extracellular matrix proteins that enhance the activity of procollagen C-proteases, by binding to the procollagen I C-peptide. They contain a C-terminal NTR domain, which have been suggested to possess inhibitory functions towards specific serine proteases but not towards metzincins, which are inhibited by the related TIMPs.


Pssm-ID: 239631  Cd Length: 124  Bit Score: 78.20  E-value: 1.83e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930 233 PETQSCARACSADADEWEAYCASEFAaVNGIVHDVDVLGAGMRLVTLLvdpDGLYKMSRLYITPDGFFFRVHILALDsss 312
Cdd:cd03576     1 PTAALCQQKCRRTGTLESNYCSSEFV-ITGTVISMTRGPGSLHATVSI---IKLYKEGRLAITQAGKTMSVKITVVC--- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930 313 chKPCPEFKpgieipspekaihrvlynatgdlsaaaqlllvtpapnslfkdqalsrashtPGSRYIVMGHIYH-KRRQLP 391
Cdd:cd03576    74 --KQCPLLR---------------------------------------------------RGLNYILMGQVDEeGRGVIP 100

                         170       180
                  ....*....|....*....|...
gi 1907082930 392 SAllQVLRGRLRPGDGLIRGSSS 414
Cdd:cd03576   101 PE--SFVMLYKTKHQKLLAALSN 121
PHA03247 PHA03247
large tegument protein UL36; Provisional
 95-246 2.43e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.32  E-value: 2.43e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930   95 SPEAPVAERkAPPPHRKPDSRETPGPRAQPLPEfSRRPRAAYAGPRAWPDPRRRKTAPPADNRA---GFRDAVHAPAALP 171
Cdd:PHA03247  2617 LPPDTHAPD-PPPPSPSPAANEPDPHPPPTVPP-PERPRDDPAPGRVSRPRRARRLGRAAQASSppqRPRRRAARPTVGS 2694

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930  172 GPRLAQAENRASPPEDSPRRALSRAVRPPG---ARAASPAHPNRPRAAAQPSG--TPQALSPEDREPETQSCARACSADA 246
Cdd:PHA03247  2695 LTSLADPPPPPPTPEPAPHALVSATPLPPGpaaARQASPALPAAPAPPAVPAGpaTPGGPARPARPPTTAGPPAPAPPAA 2774
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
132-250 3.05e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 49.49  E-value: 3.05e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930 132 PRAAYAGPRAWPDPRRR--KTAPPADNRAGFRDAVHAPAALPGPRLAQAENRASPP-------EDSPRRALSRAVRPPGA 202
Cdd:PRK12323  374 PATAAAAPVAQPAPAAAapAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPApealaaaRQASARGPGGAPAPAPA 453

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1907082930 203 RAASPAhPNRPRAAAQPSGTPQALSPEDREPETQSCARACSADADEWE 250
Cdd:PRK12323  454 PAAAPA-AAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWE 500
PHA03247 PHA03247
large tegument protein UL36; Provisional
 106-228 6.90e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.78  E-value: 6.90e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930  106 PPPHRKPDSRETPGPRAQPLPEFSRRPRAAYAGPRAWPDPRRRKTA---PPADNRAGFRDAVHAPAALPGPR--LAQAEN 180
Cdd:PHA03247  2702 PPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGpatPGGPARPARPPTTAGPPAPAPPAapAAGPPR 2781

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1907082930  181 RASPPEDSPRRALSRAVRPPGARAASPAHPNRPRAAAQPSGTPQALSP 228
Cdd:PHA03247  2782 RLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLP 2829
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 93-251 1.65e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 47.29  E-value: 1.65e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930  93 GWSPEAPVAERKAPPPHRKPDSRETPGPRAQPLPEFSRRPRAAYAGPRAWPDPrrrkTAPPADNRAGFRDAVHAPAALPG 172
Cdd:PRK07764  635 APAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAP----AAPAAPAGAAPAQPAPAPAATPP 710

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930 173 PRLAQAENRASPP----EDSPRRALSRAVRPPGARAASPAHPNRPRAAAQPSGTPQALSPEDREPETQSCARACSADADE 248
Cdd:PRK07764  711 AGQADDPAAQPPQaaqgASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDA 790


                  ...
gi 1907082930 249 WEA 251
Cdd:PRK07764  791 PSM 793
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
95-262 2.39e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 46.79  E-value: 2.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930  95 SPEAPVAERKAPPphRKPDSRETPGPRAQPLPEFSRRPRAAYAGPRAWPDPRRRKTAPPADNRAGFRDAV----HAPAAL 170
Cdd:PRK12323  429 APEALAAARQASA--RGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPppweELPPEF 506

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930 171 PGPRLAQAEN--RASPPEDSPRRALSRAVRPPGARAASPAHPNRPRAAAQPSGTPQALSPEdrepetQSCARACSADADE 248
Cdd:PRK12323  507 ASPAPAQPDAapAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPR------ASASGLPDMFDGD 580

                         170       180
                  ....*....|....*....|....*...
gi 1907082930 249 WEAYCA--------------SEFAAVNG 262
Cdd:PRK12323  581 WPALAArlpvrglaqqlarqSELAGVEG 608
PHA03247 PHA03247
large tegument protein UL36; Provisional
 96-243 3.30e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.47  E-value: 3.30e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930   96 PEAPVAERKAPPPHRKP-------DSRETPgPRAQPLPEFSRRPRAAYAGPRAWPDPRRRKTA-----PPADNRAGFRDA 163
Cdd:PHA03247  2559 APPAAPDRSVPPPRPAPrpsepavTSRARR-PDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDthapdPPPPSPSPAANE 2637

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930  164 VHAPAALPGPRLAQAENRASPPEDSPRRALSRAVRPPgaRAASPAHPNRPRAAAQPSGTPQALS-PEDREPETQSCARAC 242
Cdd:PHA03247  2638 PDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAA--QASSPPQRPRRRAARPTVGSLTSLAdPPPPPPTPEPAPHAL 2715


                   .
gi 1907082930  243 S 243
Cdd:PHA03247  2716 V 2716
PHA03247 PHA03247
large tegument protein UL36; Provisional
 95-243 3.66e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.47  E-value: 3.66e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930   95 SPEAPVAERkAPPPHRKPDSRETPGPRAQPLPEFSRRPRAAYAG----PRAWPDPRRRKTAppadnragfrdavhAPAAL 170
Cdd:PHA03247  2597 RPRAPVDDR-GDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDphppPTVPPPERPRDDP--------------APGRV 2661

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907082930  171 PGPRLAQAENRASPPEDSPRRALSRAVRPPGARAASPAHPNRPRAAAQPSgtPQALSPEDREPETQSCARACS 243
Cdd:PHA03247  2662 SRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPA--PHALVSATPLPPGPAAARQAS 2732
PHA03247 PHA03247
large tegument protein UL36; Provisional
 98-221 5.67e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 45.70  E-value: 5.67e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930   98 APVAERKAPPPhrkPDSRETPGPRAQPLPEFSRRP--RAAYAGPRAWPDPRRRKTAPPADNRAGFRDAVhAPAALPGPRL 175
Cdd:PHA03247  2835 QPTAPPPPPGP---PPPSLPLGGSVAPGGDVRRRPpsRSPAAKPAAPARPPVRRLARPAVSRSTESFAL-PPDQPERPPQ 2910

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 1907082930  176 AQAENRASPPEDSPRRALSRAVRPPGARAASPAHPN-RPRAAAQPSG 221
Cdd:PHA03247  2911 PQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTtDPAGAGEPSG 2957
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 93-251 1.14e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.59  E-value: 1.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930  93 GWSPEAPVAERKAPP-PHRKPDSRETPGPRAQPLPEFSRRPRAAYAG--PRAWPDPRRRKTAPPADNRAGfRDAVHAPAA 169
Cdd:PRK07764  605 SSGPPEEAARPAAPAaPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEhhPKHVAVPDASDGGDGWPAKAG-GAAPAAPPP 683

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930 170 LPGPRLAQAENRASPPEDSPRRALSRAVRPPGARAASPAHPNRPRAAAQPSGTPQALSPEDREPETQSCARACSADADEW 249
Cdd:PRK07764  684 APAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPA 763


                  ..
gi 1907082930 250 EA 251
Cdd:PRK07764  764 PA 765
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
98-251 1.18e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 44.46  E-value: 1.18e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930  98 APVAERKAPPPHRKPDSRETPGPRAQPLPEFSRRPRAAYAGPRAWP------DPRRRKTAPPADNRAGFRDAVHAPAALP 171
Cdd:PRK07003  367 APGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPkaaaaaAATRAEAPPAAPAPPATADRGDDAADGD 446

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930 172 GPRLAQAENRASPPEdsprRALSRAVRPPGARA--ASPAHPNRPRAAAQPSGTPQALSPEDREPETQSCARACSADADEW 249
Cdd:PRK07003  447 APVPAKANARASADS----RCDERDAQPPADSGsaSAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAP 522


                  ..
gi 1907082930 250 EA 251
Cdd:PRK07003  523 AA 524
PHA03247 PHA03247
large tegument protein UL36; Provisional
 96-233 1.41e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.54  E-value: 1.41e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930   96 PEAPVAERkaPPPHRKPDS-RETPGPRAQPLPEFSRRPRAAYAGPRAWPDPRRRKTAPP-------ADNRAGFRDAVHAP 167
Cdd:PHA03247  2475 PGAPVYRR--PAEARFPFAaGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPrmltwirGLEELASDDAGDPP 2552

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907082930  168 AALPGPRLAQAENRASPPEDSPRRALSRAVRPPGARAASPAHPNRPRAAAQPSGTPQALSPEDREP 233
Cdd:PHA03247  2553 PPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLP 2618
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
96-235 1.75e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 44.10  E-value: 1.75e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930  96 PEAPVAERKAPPPHRKPDSRETPGPRAQPLPEFSRRPRAAYAGPRAWPDPRRrktaPPAdnRAGFRDAVHAPAALPGPRL 175
Cdd:PRK12323  375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARR----SPA--PEALAAARQASARGPGGAP 448

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930 176 AQAENRASPPEDSPRRALSRAVRPPgarAASPAHPNRPRAAAQPSGTPQALSPEDREPET 235
Cdd:PRK12323  449 APAPAPAAAPAAAARPAAAGPRPVA---AAAAAAPARAAPAAAPAPADDDPPPWEELPPE 505
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 96-229 2.47e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.55  E-value: 2.47e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930  96 PEAPVAERKAPpphrkpdsreTPGPRAQPLPefSRRPRAAYAGPRAWPDPRRRKTAPPADNRAGFRDAVHAPAALPGPRL 175
Cdd:PRK14951  371 EAAAPAEKKTP----------ARPEAAAPAA--APVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAP 438

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1907082930 176 AQAENRASPPEDSPRRALSRAVRPPGARAASPAHPNRPRA-AAQPSGTPQALSPE 229
Cdd:PRK14951  439 AAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPApAAAPAAARLTPTEE 493
PHA03378 PHA03378
EBNA-3B; Provisional
 43-226 2.92e-04

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 43.52  E-value: 2.92e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930  43 SWPTePSPDHTSDPPRKEGEIPA--APfcfNAWGTLSTKMTARALWLLCL----IVGWSPEAPvaeRKAPPPHRKPDSRE 116
Cdd:PHA03378  596 PWPV-PHPSQTPEPPTTQSHIPEtsAP---RQWPMPLRPIPMRPLRMQPItfnvLVFPTPHQP---PQVEITPYKPTWTQ 668

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930 117 TPGPRAQPLP---EFSRRPRAAYAG---PRAWPDPRRRKTAPPADNR--AGFRDAVHAPAALPGP--RLAQAENRASPPE 186
Cdd:PHA03378  669 IGHIPYQPSPtgaNTMLPIQWAPGTmqpPPRAPTPMRPPAAPPGRAQrpAAATGRARPPAAAPGRarPPAAAPGRARPPA 748

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1907082930 187 DSPRRALSRA-----VRPPGARA----------ASPAHPNRPRAAAQPSGTPQAL 226
Cdd:PHA03378  749 AAPGRARPPAaapgrARPPAAAPgaptpqpppqAPPAPQQRPRGAPTPQPPPQAG 803
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 95-234 4.16e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.67  E-value: 4.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930  95 SPEAPVAERKAPPPhrkpdsretPGPRAQPLPEFSRRPRAAYAGPRAWPDPRRRKTAPPADNRAGFRDAVHAPAALPGPR 174
Cdd:PRK07764  399 PSAAAAAPAAAPAP---------AAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPA 469

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930 175 LAQAENRASPPEDSprralsravrpPGARAASPAHPNRPRAAAQPSGTPQALSPEDREPE 234
Cdd:PRK07764  470 PAAAPEPTAAPAPA-----------PPAAPAPAAAPAAPAAPAAPAGADDAATLRERWPE 518
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
95-226 4.83e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 42.53  E-value: 4.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930  95 SPEAPVAERKAPPPHRKP----DSRETPGPRAQPLPefSRRPRAAYAGPRAWPDPR--------RRKTAPPADNRAGFRD 162
Cdd:PRK07003  413 KAAAAAAATRAEAPPAAPappaTADRGDDAADGDAP--VPAKANARASADSRCDERdaqppadsGSASAPASDAPPDAAF 490

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907082930 163 AVHAPAALPGPRLAQAENRASPPEDSPRRALSRAVRPPGARAASPAhPNRPRAAAQPSGTPQAL 226
Cdd:PRK07003  491 EPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPT-PAAAAPAARAGGAAAAL 553
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 96-251 5.49e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.28  E-value: 5.49e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930  96 PEAPVAERKAPPPHRKPDSRETPGPRAQPlPEFSRrPRAAYAGPRAWPDPRR-RKTAPPADNRAGFRDAVHAPAALPGPR 174
Cdd:PRK07764  365 PSASDDERGLLARLERLERRLGVAGGAGA-PAAAA-PSAAAAAPAAAPAPAAaAPAAAAAPAPAAAPQPAPAPAPAPAPP 442

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907082930 175 LAQAENRASPPEdSPRRALSRAVRPPGARAASPAHPNRPRAAAQPSGTPQALSPEDREPETQSCARACSADADEWEA 251
Cdd:PRK07764  443 SPAGNAPAGGAP-SPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRERWPE 518
PHA03247 PHA03247
large tegument protein UL36; Provisional
 105-236 5.61e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.62  E-value: 5.61e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930  105 APPPHRKPDSRETPGPRAQPLPEFSRRPRAAYAGPRAWpDPRRRKTAPPADNRAGFRDAVHAPAALPGPRLAQAENRASP 184
Cdd:PHA03247  2765 GPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPW-DPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPP 2843

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907082930  185 PEDSPRRALSRAVRP---------PGARAASPAHPNRPRA------AAQPSGTPQALSPEDREPETQ 236
Cdd:PHA03247  2844 GPPPPSLPLGGSVAPggdvrrrppSRSPAAKPAAPARPPVrrlarpAVSRSTESFALPPDQPERPPQ 2910
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
95-260 6.05e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 42.17  E-value: 6.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930  95 SPEAPVAERKAPPPHRKPDSRETPGPRAQPLPEFSRRPRAAYAGPRAWPDPRRRKTAPPAdnragfrdAVHAPAALPGPR 174
Cdd:PRK12323  390 AAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPA--------PAPAPAAAPAAA 461

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930 175 LAQAenrASPPEDSPRRALSRAVRPPGARAASPAHPNRPRAAAQPsGTPQALSPEDREPETQSCARACSADADEWEAYCA 254
Cdd:PRK12323  462 ARPA---AAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELP-PEFASPAPAQPDAAPAGWVAESIPDPATADPDDA 537


                  ....*.
gi 1907082930 255 SEFAAV 260
Cdd:PRK12323  538 FETLAP 543
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 95-248 6.09e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.28  E-value: 6.09e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930  95 SPEAPVAERKAPPPHRKPDSRETPGPRAQPLPEFSRRPRAAYAGPRAWPDPRR-RKTAPPADNRAGFRDAVHAPAALPGP 173
Cdd:PRK07764  620 APAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKaGGAAPAAPPPAPAPAAPAAPAGAAPA 699

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930 174 RLAQ-------AENRASPPEDSPRRALSRAVRPPGARAASPAHP---NRPRAAAQPSGTPQALSPEDREPETQSCARACS 243
Cdd:PRK07764  700 QPAPapaatppAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPepdDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPP 779


                  ....*
gi 1907082930 244 ADADE 248
Cdd:PRK07764  780 SEEEE 784
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 98-247 6.41e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.28  E-value: 6.41e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930  98 APVAERKAPPPHRKPDSRETPGPRAQPLPEFSRRPRAAYAGPRAWPDPRRRKTAPPADNRAGFRDAVHAPAALPGPRLAQ 177
Cdd:PRK07764  591 APGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWP 670

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930 178 AENRASPPEDSPRRALSRAVRPPGARAASPAHPnrpRAAAQPSGTPQALSPEDREPETQSCARACSADAD 247
Cdd:PRK07764  671 AKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAP---APAATPPAGQADDPAAQPPQAAQGASAPSPAADD 737
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 95-221 6.52e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.01  E-value: 6.52e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930  95 SPEAPVAERKAPPPHRKPDSRETPGPRAQPLPEFSRRPRAAYAGPRAWPDPRRRKTAPPADNRAGFRDAVHAPAALPGPr 174
Cdd:PRK14951  376 AEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQ- 454

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1907082930 175 lAQAENRASPPEDSPRRAlsravrPPGARAASPAHPNRPRAAAQPSG 221
Cdd:PRK14951  455 -AAPETVAIPVRVAPEPA------VASAAPAPAAAPAAARLTPTEEG 494
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 45-230 6.58e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.28  E-value: 6.58e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930  45 PTEPSPDHTSDPPRKEGEIPAAPFCFNAWGTLSTKMTARALWLLClIVGWSPEAPVAERKAPPPHRKPDSRETPGPRAQP 124
Cdd:PRK07764  621 PAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDG-GDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPA 699

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930 125 LPEFSRRPRAAyagPRAWPDPRRRKTAPPADNRAGFRDAVHAPAALPGPRLAQAENRASPPEDSPRRAlsrAVRPPGARA 204
Cdd:PRK07764  700 QPAPAPAATPP---AGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAP---APAAAPAAA 773

                         170       180       190
                  ....*....|....*....|....*....|
gi 1907082930 205 ASPAHPN----RPRAAAQPSGTPQALSPED 230
Cdd:PRK07764  774 PPPSPPSeeeeMAEDDAPSMDDEDRRDAEE 803
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 21-221 1.39e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 41.31  E-value: 1.39e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930   21 RVLSPHPKHTTHPEQELKAVLFSWPTEPSP----DHTSDPPRKEGEIPAAPFCFNAWGTLSTKMTARALWLLCLIVGWSP 96
Cdd:PHA03307   193 PPPSTPPAAASPRPPRRSSPISASASSPAPapgrSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEA 272

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930   97 EAPVAERKAPPPHRKPDSRETPGPRAQPLPEFSRRPRAAYAGPRAWPDPRRRKTAPPADNRAGFRDAVHAPAALPGPRLA 176
Cdd:PHA03307   273 SGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPS 352

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*
gi 1907082930  177 QAENRASPPEDSPRRAlSRAVRPPGARAASPAHPNRPRAAAQPSG 221
Cdd:PHA03307   353 PSRPPPPADPSSPRKR-PRPSRAPSSPAASAGRPTRRRARAAVAG 396
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
96-246 1.45e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.99  E-value: 1.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930  96 PEAPVAERKAPPPHRKPDSRETPGPRAQPLPEFSRrprAAYAGPRAWPDPRRRKTAPPADNRAGFRDAVHAPAALPGPRL 175
Cdd:PRK07003  402 VTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATA---DRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSAS 478

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907082930 176 AQAE-------NRASPPEDSPRRALSRAVRPPGARAASPAHPNRPRAAAQPSGTPQALSPEDREPetqscARACSADA 246
Cdd:PRK07003  479 APASdappdaaFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPA-----ARAGGAAA 551
dnaA PRK14086
chromosomal replication initiator protein DnaA;
99-250 1.72e-03

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 40.58  E-value: 1.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930  99 PVAERKAPPPhrkPDSRETPGPRaqpLPEFSRRPRAAYAGPRAWPdprRRKTAPPADNRagfrdavhaPAALPGprlAQA 178
Cdd:PRK14086   90 PSAGEPAPPP---PHARRTSEPE---LPRPGRRPYEGYGGPRADD---RPPGLPRQDQL---------PTARPA---YPA 148

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907082930 179 ENRASPPEDSPRRALSRAVRPPGArAASPAHPNRPRAAAQPSGTPQALSPEDREPETQSCARACSADADEWE 250
Cdd:PRK14086  149 YQQRPEPGAWPRAADDYGWQQQRL-GFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDWD 219
flhF PRK06995
flagellar biosynthesis protein FlhF;
132-241 2.06e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 40.33  E-value: 2.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930 132 PRAAYAGPRAWPDPRrrkTAPPADNRAGfrdavhAPAALPGPRLAQAENRASPPEDSPRRALSRAVRPPGARAASPAHPN 211
Cdd:PRK06995   53 PPAAAAPAAAQPPPA---AAPAAVSRPA------APAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAERA 123

                          90       100       110
                  ....*....|....*....|....*....|
gi 1907082930 212 RPRAAAQPSGTPQALSPEDREPETQSCARA 241
Cdd:PRK06995  124 AAENAARRLARAAAAAPRPRVPADAAAAVA 153
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 99-230 2.15e-03

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 40.44  E-value: 2.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930  99 PVAERKAPPPHRKPDSRET------PGP----RAQPLPEFSRRPraayAGPRAWPDPRRRKTaPPADNRAgfrDAVHAPA 168
Cdd:PTZ00449  536 DSKESDEPKEGGKPGETKEgevgkkPGPakehKPSKIPTLSKKP----EFPKDPKHPKDPEE-PKKPKRP---RSAQRPT 607

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907082930 169 ALPGPRLAQAENRASPPED-----SPRRAlsravrPPGARAASPAHPNRPRAAAQPSGTPQALSPED 230
Cdd:PTZ00449  608 RPKSPKLPELLDIPKSPKRpespkSPKRP------PPPQRPSSPERPEGPKIIKSPKPPKSPKPPFD 668
flhF PRK06995
flagellar biosynthesis protein FlhF;
95-201 2.27e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 40.33  E-value: 2.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930  95 SPEAPVAERKAPPPHRKPDSRETPGPRAQPLPEFSRRPRAAyAGPRAwpDPRRRKTAPPADNRAGFRDAVHAPAALPGPR 174
Cdd:PRK06995   54 PAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRL-TAQRE--QLVARAAAPAAPEAQAPAAPAERAAAENAAR 130

                          90       100
                  ....*....|....*....|....*..
gi 1907082930 175 LAQAENRASPPEDSPRRAlSRAVRPPG 201
Cdd:PRK06995  131 RLARAAAAAPRPRVPADA-AAAVADAV 156
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
95-229 4.44e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 39.45  E-value: 4.44e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930  95 SPEAPVAERKAPPPHRKPDSRETPGPRAQPLPEFSRRP-----------RAAYAGPRAWPDPRRRKTAPPADNRAgfRDA 163
Cdd:PRK07003  469 QPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAvpdarapaaasREDAPAAAAPPAPEARPPTPAAAAPA--ARA 546

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907082930 164 VHAPAAL-----PGPRLAQAENRASPPEDSPRRALSRAVRPPGARAASPA-HPNRPRAAAQPSGTPQALSPE 229
Cdd:PRK07003  547 GGAAAALdvlrnAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVpTPRARAATGDAPPNGAARAEQ 618
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 170-254 5.81e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 38.95  E-value: 5.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930 170 LPGPRLAQAENRASPPEDSPRRAlsrAVRPPGARAASPAHPNRPRAAAQPsgtPQALSPedrePETQSCARACSADADEW 249
Cdd:PRK14965  381 APAPPSAAWGAPTPAAPAAPPPA---AAPPVPPAAPARPAAARPAPAPAP---PAAAAP----PARSADPAAAASAGDRW 450


                  ....*
gi 1907082930 250 EAYCA 254
Cdd:PRK14965  451 RAFVA 455
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 92-240 8.81e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 38.57  E-value: 8.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930  92 VGWSPEAPVAERKAPPPHRKPDSRETPGPRAQPLPEFSRRPRAAYAGPRAWPDPRRRKTAPPADNRA-GFRDAVhAPAAL 170
Cdd:PRK14965  381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAAASAGdRWRAFV-AFVKG 459

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930 171 PGPRLAQAENRASP------------PEDS--------PRR-----ALSRAV--RPPGARAASpahpnrprAAAQPSGTP 223
Cdd:PRK14965  460 KKPALGASLEQGSPlgvsaglleigfPEGSfelsamqdPDSraelkALAEQFfgRPTRLRITV--------LAAPPGAAP 531

                         170
                  ....*....|....*..
gi 1907082930 224 QALSPEDREPETQSCAR 240
Cdd:PRK14965  532 PSLAEKKAAEREQRQAR 548
PHA03247 PHA03247
large tegument protein UL36; Provisional
 46-240 9.91e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 38.38  E-value: 9.91e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930   46 TEPSPDHTSDPPRKEGeiPAAPFCFNAWGTLSTKMTARALWLLCLIVGWSPEAPVAERKAPPPHRKPDSRetPGPRAQPL 125
Cdd:PHA03247  2756 RPARPPTTAGPPAPAP--PAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAAS--PAGPLPPP 2831

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082930  126 PEFSRRPRAAYAGPRAWPDPRRRKTAP--PADNRAGFRDAVHAPAALPGPRLAQAenrasppedsPRRALSRAVRPPGAR 203
Cdd:PHA03247  2832 TSAQPTAPPPPPGPPPPSLPLGGSVAPggDVRRRPPSRSPAAKPAAPARPPVRRL----------ARPAVSRSTESFALP 2901

                          170       180       190
                   ....*....|....*....|....*....|....*..
gi 1907082930  204 AASPAHPNRPRAAAQPSGTPQALSPEDREPETQSCAR 240
Cdd:PHA03247  2902 PDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPR 2938
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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