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Conserved domains on  [gi|1907082936|ref|XP_036012841|]
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UPF0450 protein C17orf58 homolog isoform X7 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NTR_like super family cl02512
NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in ...
 184-364 2.95e-19

NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the domain plays a role in controlling axon branching in neural development, while the common function of these modules in TIMPs appears to be binding to metzincins. A subset of this family is also known as the C345C domain because it occurs as a C-terminal domain in complement C3, C4 and C5. In C5, the domain interacts with various partners during the formation of the membrane attack complex.


The actual alignment was detected with superfamily member cd03576:

Pssm-ID: 470599  Cd Length: 124  Bit Score: 82.82  E-value: 2.95e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936 184 PETQSCARACSADADEWEAYCASEFAVNGIVHDVDVLGAGMRLVTLLvdpDGLYKMSRLYITPDGFFFRVHILALDsssc 263
Cdd:cd03576     1 PTAALCQQKCRRTGTLESNYCSSEFVITGTVISMTRGPGSLHATVSI---IKLYKEGRLAITQAGKTMSVKITVVC---- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936 264 hKPCPEFKpgieipspekaihrvlynatgdlsaaaqlllvtpapnslfkdqalsrashtPGSRYIVMGHIYH-KRRQLPS 342
Cdd:cd03576    74 -KQCPLLR---------------------------------------------------RGLNYILMGQVDEeGRGVIPP 101

                         170       180
                  ....*....|....*....|..
gi 1907082936 343 AllQVLRGRLRPGDGLIRGSSS 364
Cdd:cd03576   102 E--SFVMLYKTKHQKLLAALSN 121
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 46-197 2.62e-06

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.94  E-value: 2.62e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936   46 SPEAPVAERkAPPPHRKPDSRETPGPRAQPLPEfSRRPRAAYAGPRAWPDPRRRKTAPPADNRA---GFRDAVHAPAALP 122
Cdd:PHA03247  2617 LPPDTHAPD-PPPPSPSPAANEPDPHPPPTVPP-PERPRDDPAPGRVSRPRRARRLGRAAQASSppqRPRRRAARPTVGS 2694

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936  123 GPRLAQAENRASPPEDSPRRALSRAVRPPG---ARAASPAHPNRPRAAAQPSG--TPQALSPEDREPETQSCARACSADA 197
Cdd:PHA03247  2695 LTSLADPPPPPPTPEPAPHALVSATPLPPGpaaARQASPALPAAPAPPAVPAGpaTPGGPARPARPPTTAGPPAPAPPAA 2774
 
Name Accession Description Interval E-value
NTR_PCOLCE cd03576
NTR domain, PCOLCE subfamily; Procollagen C-endopeptidase enhancers (PCOLCEs) are ...
 184-364 2.95e-19

NTR domain, PCOLCE subfamily; Procollagen C-endopeptidase enhancers (PCOLCEs) are extracellular matrix proteins that enhance the activity of procollagen C-proteases, by binding to the procollagen I C-peptide. They contain a C-terminal NTR domain, which have been suggested to possess inhibitory functions towards specific serine proteases but not towards metzincins, which are inhibited by the related TIMPs.


Pssm-ID: 239631  Cd Length: 124  Bit Score: 82.82  E-value: 2.95e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936 184 PETQSCARACSADADEWEAYCASEFAVNGIVHDVDVLGAGMRLVTLLvdpDGLYKMSRLYITPDGFFFRVHILALDsssc 263
Cdd:cd03576     1 PTAALCQQKCRRTGTLESNYCSSEFVITGTVISMTRGPGSLHATVSI---IKLYKEGRLAITQAGKTMSVKITVVC---- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936 264 hKPCPEFKpgieipspekaihrvlynatgdlsaaaqlllvtpapnslfkdqalsrashtPGSRYIVMGHIYH-KRRQLPS 342
Cdd:cd03576    74 -KQCPLLR---------------------------------------------------RGLNYILMGQVDEeGRGVIPP 101

                         170       180
                  ....*....|....*....|..
gi 1907082936 343 AllQVLRGRLRPGDGLIRGSSS 364
Cdd:cd03576   102 E--SFVMLYKTKHQKLLAALSN 121
PHA03247 PHA03247
large tegument protein UL36; Provisional
 46-197 2.62e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.94  E-value: 2.62e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936   46 SPEAPVAERkAPPPHRKPDSRETPGPRAQPLPEfSRRPRAAYAGPRAWPDPRRRKTAPPADNRA---GFRDAVHAPAALP 122
Cdd:PHA03247  2617 LPPDTHAPD-PPPPSPSPAANEPDPHPPPTVPP-PERPRDDPAPGRVSRPRRARRLGRAAQASSppqRPRRRAARPTVGS 2694

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936  123 GPRLAQAENRASPPEDSPRRALSRAVRPPG---ARAASPAHPNRPRAAAQPSG--TPQALSPEDREPETQSCARACSADA 197
Cdd:PHA03247  2695 LTSLADPPPPPPTPEPAPHALVSATPLPPGpaaARQASPALPAAPAPPAVPAGpaTPGGPARPARPPTTAGPPAPAPPAA 2774
 
Name Accession Description Interval E-value
NTR_PCOLCE cd03576
NTR domain, PCOLCE subfamily; Procollagen C-endopeptidase enhancers (PCOLCEs) are ...
 184-364 2.95e-19

NTR domain, PCOLCE subfamily; Procollagen C-endopeptidase enhancers (PCOLCEs) are extracellular matrix proteins that enhance the activity of procollagen C-proteases, by binding to the procollagen I C-peptide. They contain a C-terminal NTR domain, which have been suggested to possess inhibitory functions towards specific serine proteases but not towards metzincins, which are inhibited by the related TIMPs.


Pssm-ID: 239631  Cd Length: 124  Bit Score: 82.82  E-value: 2.95e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936 184 PETQSCARACSADADEWEAYCASEFAVNGIVHDVDVLGAGMRLVTLLvdpDGLYKMSRLYITPDGFFFRVHILALDsssc 263
Cdd:cd03576     1 PTAALCQQKCRRTGTLESNYCSSEFVITGTVISMTRGPGSLHATVSI---IKLYKEGRLAITQAGKTMSVKITVVC---- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936 264 hKPCPEFKpgieipspekaihrvlynatgdlsaaaqlllvtpapnslfkdqalsrashtPGSRYIVMGHIYH-KRRQLPS 342
Cdd:cd03576    74 -KQCPLLR---------------------------------------------------RGLNYILMGQVDEeGRGVIPP 101

                         170       180
                  ....*....|....*....|..
gi 1907082936 343 AllQVLRGRLRPGDGLIRGSSS 364
Cdd:cd03576   102 E--SFVMLYKTKHQKLLAALSN 121
PHA03247 PHA03247
large tegument protein UL36; Provisional
 46-197 2.62e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.94  E-value: 2.62e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936   46 SPEAPVAERkAPPPHRKPDSRETPGPRAQPLPEfSRRPRAAYAGPRAWPDPRRRKTAPPADNRA---GFRDAVHAPAALP 122
Cdd:PHA03247  2617 LPPDTHAPD-PPPPSPSPAANEPDPHPPPTVPP-PERPRDDPAPGRVSRPRRARRLGRAAQASSppqRPRRRAARPTVGS 2694

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936  123 GPRLAQAENRASPPEDSPRRALSRAVRPPG---ARAASPAHPNRPRAAAQPSG--TPQALSPEDREPETQSCARACSADA 197
Cdd:PHA03247  2695 LTSLADPPPPPPTPEPAPHALVSATPLPPGpaaARQASPALPAAPAPPAVPAGpaTPGGPARPARPPTTAGPPAPAPPAA 2774
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
83-201 3.80e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 49.10  E-value: 3.80e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936  83 PRAAYAGPRAWPDPRRR--KTAPPADNRAGFRDAVHAPAALPGPRLAQAENRASPP-------EDSPRRALSRAVRPPGA 153
Cdd:PRK12323  374 PATAAAAPVAQPAPAAAapAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPApealaaaRQASARGPGGAPAPAPA 453

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1907082936 154 RAASPAhPNRPRAAAQPSGTPQALSPEDREPETQSCARACSADADEWE 201
Cdd:PRK12323  454 PAAAPA-AAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWE 500
PHA03247 PHA03247
large tegument protein UL36; Provisional
 57-179 7.36e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.40  E-value: 7.36e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936   57 PPPHRKPDSRETPGPRAQPLPEFSRRPRAAYAGPRAWPDPRRRKTA---PPADNRAGFRDAVHAPAALPGPR--LAQAEN 131
Cdd:PHA03247  2702 PPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGpatPGGPARPARPPTTAGPPAPAPPAapAAGPPR 2781

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1907082936  132 RASPPEDSPRRALSRAVRPPGARAASPAHPNRPRAAAQPSGTPQALSP 179
Cdd:PHA03247  2782 RLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLP 2829
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 44-202 1.80e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.90  E-value: 1.80e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936  44 GWSPEAPVAERKAPPPHRKPDSRETPGPRAQPLPEFSRRPRAAYAGPRAWPDPrrrkTAPPADNRAGFRDAVHAPAALPG 123
Cdd:PRK07764  635 APAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAP----AAPAAPAGAAPAQPAPAPAATPP 710

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936 124 PRLAQAENRASPP----EDSPRRALSRAVRPPGARAASPAHPNRPRAAAQPSGTPQALSPEDREPETQSCARACSADADE 199
Cdd:PRK07764  711 AGQADDPAAQPPQaaqgASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDA 790


                  ...
gi 1907082936 200 WEA 202
Cdd:PRK07764  791 PSM 793
PHA03247 PHA03247
large tegument protein UL36; Provisional
 17-172 2.12e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.86  E-value: 2.12e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936   17 PSLRFPAWGTLSTKMTARALWLLCLIVGWSPEAPVAERKAPPPHRKP-DSRETPGPRAQPLPEFSRRP--RAAYAGPRAW 93
Cdd:PHA03247  2799 PSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPpPPSLPLGGSVAPGGDVRRRPpsRSPAAKPAAP 2878

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936   94 PDPRRRKTAPPADNRAGFRDAVhAPAALPGPRLAQAENRASPPEDSPRRALSRAVRPPGARAASPAHPN-RPRAAAQPSG 172
Cdd:PHA03247  2879 ARPPVRRLARPAVSRSTESFAL-PPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTtDPAGAGEPSG 2957
PHA03247 PHA03247
large tegument protein UL36; Provisional
 47-194 3.35e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.08  E-value: 3.35e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936   47 PEAPVAERKAPPPHRKP-------DSRETPgPRAQPLPEFSRRPRAAYAGPRAWPDPRRRKTA-----PPADNRAGFRDA 114
Cdd:PHA03247  2559 APPAAPDRSVPPPRPAPrpsepavTSRARR-PDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDthapdPPPPSPSPAANE 2637

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936  115 VHAPAALPGPRLAQAENRASPPEDSPRRALSRAVRPPgaRAASPAHPNRPRAAAQPSGTPQALS-PEDREPETQSCARAC 193
Cdd:PHA03247  2638 PDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAA--QASSPPQRPRRRAARPTVGSLTSLAdPPPPPPTPEPAPHAL 2715


                   .
gi 1907082936  194 S 194
Cdd:PHA03247  2716 V 2716
PHA03247 PHA03247
large tegument protein UL36; Provisional
 46-194 3.91e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.08  E-value: 3.91e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936   46 SPEAPVAERkAPPPHRKPDSRETPGPRAQPLPEFSRRPRAAYAG----PRAWPDPRRRKTAppadnragfrdavhAPAAL 121
Cdd:PHA03247  2597 RPRAPVDDR-GDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDphppPTVPPPERPRDDP--------------APGRV 2661

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907082936  122 PGPRLAQAENRASPPEDSPRRALSRAVRPPGARAASPAHPNRPRAAAQPSgtPQALSPEDREPETQSCARACS 194
Cdd:PHA03247  2662 SRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPA--PHALVSATPLPPGPAAARQAS 2732
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
46-206 5.49e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 45.25  E-value: 5.49e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936  46 SPEAPVAERKAPPphRKPDSRETPGPRAQPLPEFSRRPRAAYAGPRAWPDPRRRKTAPPADNRAGFRDAV----HAPAAL 121
Cdd:PRK12323  429 APEALAAARQASA--RGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPppweELPPEF 506

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936 122 PGPRLAQAEN--RASPPEDSPRRALSRAVRPPGARAASPAHPNRPRAAAQPSGTPQALSPEdrepetQSCARACSADADE 199
Cdd:PRK12323  507 ASPAPAQPDAapAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPR------ASASGLPDMFDGD 580


                  ....*..
gi 1907082936 200 WEAYCAS 206
Cdd:PRK12323  581 WPALAAR 587
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 44-202 1.34e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.21  E-value: 1.34e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936  44 GWSPEAPVAERKAPP-PHRKPDSRETPGPRAQPLPEFSRRPRAAYAG--PRAWPDPRRRKTAPPADNRAGfRDAVHAPAA 120
Cdd:PRK07764  605 SSGPPEEAARPAAPAaPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEhhPKHVAVPDASDGGDGWPAKAG-GAAPAAPPP 683

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936 121 LPGPRLAQAENRASPPEDSPRRALSRAVRPPGARAASPAHPNRPRAAAQPSGTPQALSPEDREPETQSCARACSADADEW 200
Cdd:PRK07764  684 APAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPA 763


                  ..
gi 1907082936 201 EA 202
Cdd:PRK07764  764 PA 765
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
49-202 1.41e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 44.07  E-value: 1.41e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936  49 APVAERKAPPPHRKPDSRETPGPRAQPLPEFSRRPRAAYAGPRAWP------DPRRRKTAPPADNRAGFRDAVHAPAALP 122
Cdd:PRK07003  367 APGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPkaaaaaAATRAEAPPAAPAPPATADRGDDAADGD 446

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936 123 GPRLAQAENRASPPEdsprRALSRAVRPPGARA--ASPAHPNRPRAAAQPSGTPQALSPEDREPETQSCARACSADADEW 200
Cdd:PRK07003  447 APVPAKANARASADS----RCDERDAQPPADSGsaSAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAP 522


                  ..
gi 1907082936 201 EA 202
Cdd:PRK07003  523 AA 524
PHA03247 PHA03247
large tegument protein UL36; Provisional
 47-184 1.52e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.16  E-value: 1.52e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936   47 PEAPVAERkaPPPHRKPDS-RETPGPRAQPLPEFSRRPRAAYAGPRAWPDPRRRKTAPP-------ADNRAGFRDAVHAP 118
Cdd:PHA03247  2475 PGAPVYRR--PAEARFPFAaGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPrmltwirGLEELASDDAGDPP 2552

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907082936  119 AALPGPRLAQAENRASPPEDSPRRALSRAVRPPGARAASPAHPNRPRAAAQPSGTPQALSPEDREP 184
Cdd:PHA03247  2553 PPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLP 2618
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
47-186 1.98e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 43.33  E-value: 1.98e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936  47 PEAPVAERKAPPPHRKPDSRETPGPRAQPLPEFSRRPRAAYAGPRAWPDPRRrktaPPAdnRAGFRDAVHAPAALPGPRL 126
Cdd:PRK12323  375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARR----SPA--PEALAAARQASARGPGGAP 448

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936 127 AQAENRASPPEDSPRRALSRAVRPPgarAASPAHPNRPRAAAQPSGTPQALSPEDREPET 186
Cdd:PRK12323  449 APAPAPAAAPAAAARPAAAGPRPVA---AAAAAAPARAAPAAAPAPADDDPPPWEELPPE 505
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 47-180 3.13e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.78  E-value: 3.13e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936  47 PEAPVAERKAPpphrkpdsreTPGPRAQPLPefSRRPRAAYAGPRAWPDPRRRKTAPPADNRAGFRDAVHAPAALPGPRL 126
Cdd:PRK14951  371 EAAAPAEKKTP----------ARPEAAAPAA--APVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAP 438

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1907082936 127 AQAENRASPPEDSPRRALSRAVRPPGARAASPAHPNRPRA-AAQPSGTPQALSPE 180
Cdd:PRK14951  439 AAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPApAAAPAAARLTPTEE 493
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
49-209 4.13e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 42.53  E-value: 4.13e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936  49 APVAERKAPpphrKPDSRETPGPRAQPLPEFSRRPRAAYAGPR---AWPDPRRRKTAPPA-DNRAGFRDAVHAPAALPGP 124
Cdd:PRK07003  373 PARVAGAVP----APGARAAAAVGASAVPAVTAVTGAAGAALApkaAAAAAATRAEAPPAaPAPPATADRGDDAADGDAP 448

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936 125 RLAQAENRASPPEDSPRRALSRAVRPPGARAASPAHPNRPRAAAQPSGTPQALSPEDREPETQSCARACSADADEWEAYC 204
Cdd:PRK07003  449 VPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPP 528


                  ....*
gi 1907082936 205 ASEFA 209
Cdd:PRK07003  529 APEAR 533
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 46-185 4.78e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.28  E-value: 4.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936  46 SPEAPVAERKAPPPhrkpdsretPGPRAQPLPEFSRRPRAAYAGPRAWPDPRRRKTAPPADNRAGFRDAVHAPAALPGPR 125
Cdd:PRK07764  399 PSAAAAAPAAAPAP---------AAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPA 469

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936 126 LAQAENRASPPEDSPRralsravrppgARAASPAHPNRPRAAAQPSGTPQALSPEDREPE 185
Cdd:PRK07764  470 PAAAPEPTAAPAPAPP-----------AAPAPAAAPAAPAAPAAPAGADDAATLRERWPE 518
PHA03247 PHA03247
large tegument protein UL36; Provisional
 56-187 6.42e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.23  E-value: 6.42e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936   56 APPPHRKPDSRETPGPRAQPLPEFSRRPRAAYAGPRAWpDPRRRKTAPPADNRAGFRDAVHAPAALPGPRLAQAENRASP 135
Cdd:PHA03247  2765 GPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPW-DPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPP 2843

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907082936  136 PEDSPRRALSRAVRP---------PGARAASPAHPNRPRA------AAQPSGTPQALSPEDREPETQ 187
Cdd:PHA03247  2844 GPPPPSLPLGGSVAPggdvrrrppSRSPAAKPAAPARPPVrrlarpAVSRSTESFALPPDQPERPPQ 2910
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 46-199 6.76e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.90  E-value: 6.76e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936  46 SPEAPVAERKAPPPHRKPDSRETPGPRAQPLPEFSRRPRAAYAGPRAWPDPRR-RKTAPPADNRAGFRDAVHAPAALPGP 124
Cdd:PRK07764  620 APAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKaGGAAPAAPPPAPAPAAPAAPAGAAPA 699

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936 125 RLAQ-------AENRASPPEDSPRRALSRAVRPPGARAASPAHP---NRPRAAAQPSGTPQALSPEDREPETQSCARACS 194
Cdd:PRK07764  700 QPAPapaatppAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPepdDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPP 779


                  ....*
gi 1907082936 195 ADADE 199
Cdd:PRK07764  780 SEEEE 784
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 47-202 6.82e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.90  E-value: 6.82e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936  47 PEAPVAERKAPPPHRKPDSRETPGPRAQPlPEFSRrPRAAYAGPRAWPDPRR-RKTAPPADNRAGFRDAVHAPAALPGPR 125
Cdd:PRK07764  365 PSASDDERGLLARLERLERRLGVAGGAGA-PAAAA-PSAAAAAPAAAPAPAAaAPAAAAAPAPAAAPQPAPAPAPAPAPP 442

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907082936 126 LAQAENRASPPEdSPRRALSRAVRPPGARAASPAHPNRPRAAAQPSGTPQALSPEDREPETQSCARACSADADEWEA 202
Cdd:PRK07764  443 SPAGNAPAGGAP-SPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRERWPE 518
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 49-198 7.19e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.90  E-value: 7.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936  49 APVAERKAPPPHRKPDSRETPGPRAQPLPEFSRRPRAAYAGPRAWPDPRRRKTAPPADNRAGFRDAVHAPAALPGPRLAQ 128
Cdd:PRK07764  591 APGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWP 670

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936 129 AENRASPPEDSPRRALSRAVRPPGARAASPAHPnrpRAAAQPSGTPQALSPEDREPETQSCARACSADAD 198
Cdd:PRK07764  671 AKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAP---APAATPPAGQADDPAAQPPQAAQGASAPSPAADD 737
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 46-172 7.41e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 41.62  E-value: 7.41e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936  46 SPEAPVAERKAPPPHRKPDSRETPGPRAQPLPEFSRRPRAAYAGPRAWPDPRRRKTAPPADNRAGFRDAVHAPAALPGPr 125
Cdd:PRK14951  376 AEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQ- 454

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1907082936 126 lAQAENRASPPEDSPRRAlsravrPPGARAASPAHPNRPRAAAQPSG 172
Cdd:PRK14951  455 -AAPETVAIPVRVAPEPA------VASAAPAPAAAPAAARLTPTEEG 494
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
46-198 9.14e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.40  E-value: 9.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936  46 SPEAPVAERKAPPPHRKPDSRETPGPRAQPLPEFSRRPRAAYAGPRAWPDPRRRKTAPPAdnragfrdAVHAPAALPGPR 125
Cdd:PRK12323  390 AAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPA--------PAPAPAAAPAAA 461

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907082936 126 LAQAenrASPPEDSPRRALSRAVRPPGARAASPAHPNRPRAAAQPsGTPQALSPEDREP-----ETQSCARACSADAD 198
Cdd:PRK12323  462 ARPA---AAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELP-PEFASPAPAQPDAapagwVAESIPDPATADPD 535
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 50-181 1.15e-03

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 41.21  E-value: 1.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936  50 PVAERKAPPPHRKPDSRET------PGP----RAQPLPEFSRRPraayAGPRAWPDPRRRKTaPPADNRAgfrDAVHAPA 119
Cdd:PTZ00449  536 DSKESDEPKEGGKPGETKEgevgkkPGPakehKPSKIPTLSKKP----EFPKDPKHPKDPEE-PKKPKRP---RSAQRPT 607

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907082936 120 ALPGPRLAQAENRASPPED-----SPRRAlsravrPPGARAASPAHPNRPRAAAQPSGTPQALSPED 181
Cdd:PTZ00449  608 RPKSPKLPELLDIPKSPKRpespkSPKRP------PPPQRPSSPERPEGPKIIKSPKPPKSPKPPFD 668
PHA03378 PHA03378
EBNA-3B; Provisional
 56-177 1.24e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 41.21  E-value: 1.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936  56 APPPHRKPDSRETPGPRAQPLPEFSRRPRAAYA---GPRAWPDPRRRKTAPPADNR--AGFRDAVHAPAALPGPrlaqae 130
Cdd:PHA03378  690 APGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGrarPPAAAPGRARPPAAAPGRARppAAAPGRARPPAAAPGR------ 763

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1907082936 131 nrASPPEDSPRRAlsravRPPGARAASPAHPNRPRAAAQPSGTPQAL 177
Cdd:PHA03378  764 --ARPPAAAPGAP-----TPQPPPQAPPAPQQRPRGAPTPQPPPQAG 803
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 44-181 1.26e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.12  E-value: 1.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936  44 GWSPEAPVAERKAPPPHRKPDSRETPGPRAQPLPEFSRRPRAAyagPRAWPDPRRRKTAPPADNRAGFRDAVHAPAALPG 123
Cdd:PRK07764  668 GWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPP---AGQADDPAAQPPQAAQGASAPSPAADDPVPLPPE 744

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907082936 124 PRLAQAENRASPPEDSPRRAlsrAVRPPGARAASPAHPN----RPRAAAQPSGTPQALSPED 181
Cdd:PRK07764  745 PDDPPDPAGAPAQPPPPPAP---APAAAPAAAPPPSPPSeeeeMAEDDAPSMDDEDRRDAEE 803
dnaA PRK14086
chromosomal replication initiator protein DnaA;
50-201 1.64e-03

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 40.58  E-value: 1.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936  50 PVAERKAPPPhrkPDSRETPGPRaqpLPEFSRRPRAAYAGPRAWPdprRRKTAPPADNRagfrdavhaPAALPGprlAQA 129
Cdd:PRK14086   90 PSAGEPAPPP---PHARRTSEPE---LPRPGRRPYEGYGGPRADD---RPPGLPRQDQL---------PTARPA---YPA 148

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907082936 130 ENRASPPEDSPRRALSRAVRPPGArAASPAHPNRPRAAAQPSGTPQALSPEDREPETQSCARACSADADEWE 201
Cdd:PRK14086  149 YQQRPEPGAWPRAADDYGWQQQRL-GFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDWD 219
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
47-197 1.75e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.60  E-value: 1.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936  47 PEAPVAERKAPPPHRKPDSRETPGPRAQPLPEFSRrprAAYAGPRAWPDPRRRKTAPPADNRAGFRDAVHAPAALPGPRL 126
Cdd:PRK07003  402 VTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATA---DRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSAS 478

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907082936 127 AQAE-------NRASPPEDSPRRALSRAVRPPGARAASPAHPNRPRAAAQPSGTPQALSPEDREPetqscARACSADA 197
Cdd:PRK07003  479 APASdappdaaFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPA-----ARAGGAAA 551
flhF PRK06995
flagellar biosynthesis protein FlhF;
83-192 2.51e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 39.95  E-value: 2.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936  83 PRAAYAGPRAWPDPRrrkTAPPADNRAGfrdavhAPAALPGPRLAQAENRASPPEDSPRRALSRAVRPPGARAASPAHPN 162
Cdd:PRK06995   53 PPAAAAPAAAQPPPA---AAPAAVSRPA------APAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAERA 123

                          90       100       110
                  ....*....|....*....|....*....|
gi 1907082936 163 RPRAAAQPSGTPQALSPEDREPETQSCARA 192
Cdd:PRK06995  124 AAENAARRLARAAAAAPRPRVPADAAAAVA 153
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 45-172 2.78e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 40.15  E-value: 2.78e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936   45 WSPEAPVAERKAPPPHRKPDSRETPGPRAQPLPEFSRRPRAAYAGPRAWPDPRRRKTAPPADNRAGFRDAVHAPAALPGP 124
Cdd:PHA03307   270 WEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSR 349

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1907082936  125 RLAQAENRASPPEDSPRRAlSRAVRPPGARAASPAHPNRPRAAAQPSG 172
Cdd:PHA03307   350 SPSPSRPPPPADPSSPRKR-PRPSRAPSSPAASAGRPTRRRARAAVAG 396
flhF PRK06995
flagellar biosynthesis protein FlhF;
46-152 2.83e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 39.56  E-value: 2.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936  46 SPEAPVAERKAPPPHRKPDSRETPGPRAQPLPEFSRRPRAAyAGPRAwpDPRRRKTAPPADNRAGFRDAVHAPAALPGPR 125
Cdd:PRK06995   54 PAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRL-TAQRE--QLVARAAAPAAPEAQAPAAPAERAAAENAAR 130

                          90       100
                  ....*....|....*....|....*..
gi 1907082936 126 LAQAENRASPPEDSPRRAlSRAVRPPG 152
Cdd:PRK06995  131 RLARAAAAAPRPRVPADA-AAAVADAV 156
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
46-184 4.08e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 39.45  E-value: 4.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936  46 SPEAPVAERKAPPPHRKPDSRETPGPRAQPLPEFSRRPRAAYAGPRAWPDPRRRKTAPPADN---RAGFR---DAVHAPA 119
Cdd:PRK07003  493 APRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDvlrNAGMRvssDRGARAA 572

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907082936 120 ALPGPRLAQAenrASPPEDSPRRALSraVRPPGARAASPAHPNRPRA-AAQPSGTPQALSPEDREP 184
Cdd:PRK07003  573 AAAKPAAAPA---AAPKPAAPRVAVQ--VPTPRARAATGDAPPNGAArAEQAAESRGAPPPWEDIP 633
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
46-180 5.82e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 38.68  E-value: 5.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936  46 SPEAPVAERKAPPPHRKPDSRETPGPRAQPLPEFSRRP-----------RAAYAGPRAWPDPRRRKTAPPADNRAgfRDA 114
Cdd:PRK07003  469 QPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAvpdarapaaasREDAPAAAAPPAPEARPPTPAAAAPA--ARA 546

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907082936 115 VHAPAAL-----PGPRLAQAENRASPPEDSPRRALSRAVRPPGARAASPA-HPNRPRAAAQPSGTPQALSPE 180
Cdd:PRK07003  547 GGAAAALdvlrnAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVpTPRARAATGDAPPNGAARAEQ 618
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 121-205 6.11e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 38.57  E-value: 6.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936 121 LPGPRLAQAENRASPPEDSPRRAlsrAVRPPGARAASPAHPNRPRAAAQPsgtPQALSPedrePETQSCARACSADADEW 200
Cdd:PRK14965  381 APAPPSAAWGAPTPAAPAAPPPA---AAPPVPPAAPARPAAARPAPAPAP---PAAAAP----PARSADPAAAASAGDRW 450


                  ....*
gi 1907082936 201 EAYCA 205
Cdd:PRK14965  451 RAFVA 455
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 84-215 9.64e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 38.16  E-value: 9.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907082936  84 RAAYAGPRAWPDPRRRKTAPPADNRAGFRDAVHAPAALPGPRLAQAENRASPPED---SPRRALSRAVRPPGARAASPA- 159
Cdd:PRK14951  365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAaapPAPVAAPAAAAPAAAPAAAPAa 444

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907082936 160 --------HPNRPRAAAQP----SGTPQALSPEDREPETQSCARACSADADEWEA----YCASEfAVNGIVH 215
Cdd:PRK14951  445 valapappAQAAPETVAIPvrvaPEPAVASAAPAPAAAPAAARLTPTEEGDVWHAtvqqLAAAE-AITALAR 515
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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