tRNA (cytosine(34)-C(5))-methyltransferase, mitochondrial isoform X2 [Mus musculus]
Protein Classification
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| RsmB super family | cl33775 | 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and ... |
118-156 | 8.45e-10 | ||
16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and biogenesis]; 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family is part of the Pathway/BioSystem: 16S rRNA modification The actual alignment was detected with superfamily member COG0144: Pssm-ID: 439914 [Multi-domain] Cd Length: 441 Bit Score: 56.55 E-value: 8.45e-10
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| Name | Accession | Description | Interval | E-value | ||
| RsmB | COG0144 | 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and ... |
118-156 | 8.45e-10 | ||
16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and biogenesis]; 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family is part of the Pathway/BioSystem: 16S rRNA modification Pssm-ID: 439914 [Multi-domain] Cd Length: 441 Bit Score: 56.55 E-value: 8.45e-10
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| PRK14902 | PRK14902 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB; |
119-147 | 8.62e-07 | ||
16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB; Pssm-ID: 237857 [Multi-domain] Cd Length: 444 Bit Score: 47.86 E-value: 8.62e-07
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| Methyltr_RsmB-F | pfam01189 | 16S rRNA methyltransferase RsmB/F; This is the catalytic core of this SAM-dependent 16S ... |
124-151 | 2.44e-05 | ||
16S rRNA methyltransferase RsmB/F; This is the catalytic core of this SAM-dependent 16S ribosomal methyltransferase RsmB/F enzyme. There is a catalytic cysteine residue at 180 in UniProtKB:Q5SII2, with another highly conserved cysteine at residue 230. It methylates the C(5) position of cytosine 2870 (m5C2870) in 25S rRNA. Pssm-ID: 426109 [Multi-domain] Cd Length: 199 Bit Score: 42.80 E-value: 2.44e-05
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| rsmB | TIGR00563 | 16S rRNA (cytosine(967)-C(5))-methyltransferase; This protein is also known as sun protein. ... |
117-161 | 1.28e-04 | ||
16S rRNA (cytosine(967)-C(5))-methyltransferase; This protein is also known as sun protein. The reading frame was originally interpreted as two reading frames, fmu and fmv. The recombinant protein from E. coli was shown to methylate only C967 of small subunit (16S) ribosomal RNA and to produce only m5C at that position. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. [Protein synthesis, tRNA and rRNA base modification] Pssm-ID: 273141 [Multi-domain] Cd Length: 426 Bit Score: 41.39 E-value: 1.28e-04
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| Name | Accession | Description | Interval | E-value | ||
| RsmB | COG0144 | 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and ... |
118-156 | 8.45e-10 | ||
16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and biogenesis]; 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family is part of the Pathway/BioSystem: 16S rRNA modification Pssm-ID: 439914 [Multi-domain] Cd Length: 441 Bit Score: 56.55 E-value: 8.45e-10
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| PRK14902 | PRK14902 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB; |
119-147 | 8.62e-07 | ||
16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB; Pssm-ID: 237857 [Multi-domain] Cd Length: 444 Bit Score: 47.86 E-value: 8.62e-07
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| PRK10901 | PRK10901 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB; |
118-153 | 1.90e-06 | ||
16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB; Pssm-ID: 236790 [Multi-domain] Cd Length: 427 Bit Score: 46.72 E-value: 1.90e-06
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| Methyltr_RsmB-F | pfam01189 | 16S rRNA methyltransferase RsmB/F; This is the catalytic core of this SAM-dependent 16S ... |
124-151 | 2.44e-05 | ||
16S rRNA methyltransferase RsmB/F; This is the catalytic core of this SAM-dependent 16S ribosomal methyltransferase RsmB/F enzyme. There is a catalytic cysteine residue at 180 in UniProtKB:Q5SII2, with another highly conserved cysteine at residue 230. It methylates the C(5) position of cytosine 2870 (m5C2870) in 25S rRNA. Pssm-ID: 426109 [Multi-domain] Cd Length: 199 Bit Score: 42.80 E-value: 2.44e-05
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| PRK14904 | PRK14904 | 16S rRNA methyltransferase B; Provisional |
117-149 | 2.55e-05 | ||
16S rRNA methyltransferase B; Provisional Pssm-ID: 237858 [Multi-domain] Cd Length: 445 Bit Score: 43.51 E-value: 2.55e-05
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| rsmB | TIGR00563 | 16S rRNA (cytosine(967)-C(5))-methyltransferase; This protein is also known as sun protein. ... |
117-161 | 1.28e-04 | ||
16S rRNA (cytosine(967)-C(5))-methyltransferase; This protein is also known as sun protein. The reading frame was originally interpreted as two reading frames, fmu and fmv. The recombinant protein from E. coli was shown to methylate only C967 of small subunit (16S) ribosomal RNA and to produce only m5C at that position. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. [Protein synthesis, tRNA and rRNA base modification] Pssm-ID: 273141 [Multi-domain] Cd Length: 426 Bit Score: 41.39 E-value: 1.28e-04
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| Blast search parameters | ||||
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