NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1907118883|ref|XP_036015929|]
View 

transmembrane protein 45A isoform X2 [Mus musculus]

Protein Classification

TMEM45 family protein( domain architecture ID 10521718)

TMEM45 family protein is a DUF716 domain-containing protein; similar to Homo sapiens transmembrane epididymal protein 1 and transmembrane protein 45A/B

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF716 pfam04819
Family of unknown function (DUF716); This family is equally distributed in both metazoa and ...
 121-239 2.84e-32

Family of unknown function (DUF716); This family is equally distributed in both metazoa and plants. Annotation associated with Swiss:Q9SLW7 suggest that it may be involved in response to viral attack in plants. However, no clear function has been assigned to this family.


:

Pssm-ID: 461443  Cd Length: 138  Bit Score: 115.78  E-value: 2.84e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118883 121 SKLMLSIAIFVETFMFYNHTHGREMIDIFVHQLLVFVGTFSGLVAFLEFLVKNNALLELLRCSLLMFQGTWFWQMAFVLY 200
Cdd:pfam04819   4 LFLLAALAFFQELLLFHFHSTDHSGLEGQYHLLLQLVIFLCLLSTLLEALLPKSFLADLVRSASILLQGLWFWQMGFMLY 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1907118883 201 PPS--------------GSATWNL--SDIQNKMFLSMCFCWHYASILILIGVKYA 239
Cdd:pfam04819  84 TPSfipggchdvcsgghGGVKCDSeeADHRAKALANLQFSWHVAFVLVFVVVLYA 138
 
Name Accession Description Interval E-value
DUF716 pfam04819
Family of unknown function (DUF716); This family is equally distributed in both metazoa and ...
 121-239 2.84e-32

Family of unknown function (DUF716); This family is equally distributed in both metazoa and plants. Annotation associated with Swiss:Q9SLW7 suggest that it may be involved in response to viral attack in plants. However, no clear function has been assigned to this family.


Pssm-ID: 461443  Cd Length: 138  Bit Score: 115.78  E-value: 2.84e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118883 121 SKLMLSIAIFVETFMFYNHTHGREMIDIFVHQLLVFVGTFSGLVAFLEFLVKNNALLELLRCSLLMFQGTWFWQMAFVLY 200
Cdd:pfam04819   4 LFLLAALAFFQELLLFHFHSTDHSGLEGQYHLLLQLVIFLCLLSTLLEALLPKSFLADLVRSASILLQGLWFWQMGFMLY 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1907118883 201 PPS--------------GSATWNL--SDIQNKMFLSMCFCWHYASILILIGVKYA 239
Cdd:pfam04819  84 TPSfipggchdvcsgghGGVKCDSeeADHRAKALANLQFSWHVAFVLVFVVVLYA 138
 
Name Accession Description Interval E-value
DUF716 pfam04819
Family of unknown function (DUF716); This family is equally distributed in both metazoa and ...
 121-239 2.84e-32

Family of unknown function (DUF716); This family is equally distributed in both metazoa and plants. Annotation associated with Swiss:Q9SLW7 suggest that it may be involved in response to viral attack in plants. However, no clear function has been assigned to this family.


Pssm-ID: 461443  Cd Length: 138  Bit Score: 115.78  E-value: 2.84e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907118883 121 SKLMLSIAIFVETFMFYNHTHGREMIDIFVHQLLVFVGTFSGLVAFLEFLVKNNALLELLRCSLLMFQGTWFWQMAFVLY 200
Cdd:pfam04819   4 LFLLAALAFFQELLLFHFHSTDHSGLEGQYHLLLQLVIFLCLLSTLLEALLPKSFLADLVRSASILLQGLWFWQMGFMLY 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1907118883 201 PPS--------------GSATWNL--SDIQNKMFLSMCFCWHYASILILIGVKYA 239
Cdd:pfam04819  84 TPSfipggchdvcsgghGGVKCDSeeADHRAKALANLQFSWHVAFVLVFVVVLYA 138
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH