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Conserved domains on  [gi|1931720849|ref|XP_037490979|]
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apicoplast ribosomal protein S5 (apicoplast) [Plasmodium vinckei vinckei]

Protein Classification

uS5 family ribosomal protein( domain architecture ID 10448403)

uS5 family ribosomal protein such as oomycetes 30S ribosomal protein S5, metazoan mitochondrial 28S ribosomal protein S5, and plasmodium apicoplast ribosomal protein S5

Gene Ontology:  GO:0003735|GO:0006412
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_S5 pfam00333
Ribosomal protein S5, N-terminal domain;
119-168 1.55e-06

Ribosomal protein S5, N-terminal domain;


:

Pssm-ID: 459765 [Multi-domain]  Cd Length: 65  Bit Score: 44.28  E-value: 1.55e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1931720849 119 KKGRIKRYKVILLTGNKQGWVGIGIGKHINLNKAILFSKINSLNNIYYFK 168
Cdd:pfam00333  16 KGGRRFSFSALVVVGDGNGHVGLGVGKAKEVPTAIRKAIELAKKNLVPVP 65
 
Name Accession Description Interval E-value
Ribosomal_S5 pfam00333
Ribosomal protein S5, N-terminal domain;
119-168 1.55e-06

Ribosomal protein S5, N-terminal domain;


Pssm-ID: 459765 [Multi-domain]  Cd Length: 65  Bit Score: 44.28  E-value: 1.55e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1931720849 119 KKGRIKRYKVILLTGNKQGWVGIGIGKHINLNKAILFSKINSLNNIYYFK 168
Cdd:pfam00333  16 KGGRRFSFSALVVVGDGNGHVGLGVGKAKEVPTAIRKAIELAKKNLVPVP 65
rps5 CHL00138
ribosomal protein S5; Validated
 115-167 2.24e-05

ribosomal protein S5; Validated


Pssm-ID: 177060  Cd Length: 143  Bit Score: 43.05  E-value: 2.24e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1931720849 115 SYTIKKGRIKRYKVILLTGNKQGWVGIGIGKHINLNKAILFSKINSLNNIYYF 167
Cdd:CHL00138   35 SKVVKGGKKLSFRAIVVIGNENGWVGVGVGKADDVQNAVKKAVTDAKKNLITI 87
 
Name Accession Description Interval E-value
Ribosomal_S5 pfam00333
Ribosomal protein S5, N-terminal domain;
119-168 1.55e-06

Ribosomal protein S5, N-terminal domain;


Pssm-ID: 459765 [Multi-domain]  Cd Length: 65  Bit Score: 44.28  E-value: 1.55e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1931720849 119 KKGRIKRYKVILLTGNKQGWVGIGIGKHINLNKAILFSKINSLNNIYYFK 168
Cdd:pfam00333  16 KGGRRFSFSALVVVGDGNGHVGLGVGKAKEVPTAIRKAIELAKKNLVPVP 65
rps5 CHL00138
ribosomal protein S5; Validated
 115-167 2.24e-05

ribosomal protein S5; Validated


Pssm-ID: 177060  Cd Length: 143  Bit Score: 43.05  E-value: 2.24e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1931720849 115 SYTIKKGRIKRYKVILLTGNKQGWVGIGIGKHINLNKAILFSKINSLNNIYYF 167
Cdd:CHL00138   35 SKVVKGGKKLSFRAIVVIGNENGWVGVGVGKADDVQNAVKKAVTDAKKNLITI 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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