apicoplast ribosomal protein S4 (apicoplast) [Plasmodium vinckei vinckei]
List of domain hits
Name | Accession | Description | Interval | E-value | |||
rps4 super family | cl29646 | ribosomal protein S4; Reviewed |
1-148 | 5.18e-09 | |||
ribosomal protein S4; Reviewed The actual alignment was detected with superfamily member CHL00113: Pssm-ID: 177038 [Multi-domain] Cd Length: 201 Bit Score: 53.68 E-value: 5.18e-09
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Name | Accession | Description | Interval | E-value | |||
rps4 | CHL00113 | ribosomal protein S4; Reviewed |
1-148 | 5.18e-09 | |||
ribosomal protein S4; Reviewed Pssm-ID: 177038 [Multi-domain] Cd Length: 201 Bit Score: 53.68 E-value: 5.18e-09
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S4 | smart00363 | S4 RNA-binding domain; |
88-146 | 7.05e-08 | |||
S4 RNA-binding domain; Pssm-ID: 214638 [Multi-domain] Cd Length: 60 Bit Score: 47.59 E-value: 7.05e-08
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S4 | pfam01479 | S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was ... |
89-135 | 9.15e-08 | |||
S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation. The S4 domain probably mediates binding to RNA. Pssm-ID: 396182 [Multi-domain] Cd Length: 48 Bit Score: 47.10 E-value: 9.15e-08
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RpsD | COG0522 | Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ... |
1-135 | 8.28e-05 | |||
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit Pssm-ID: 440288 [Multi-domain] Cd Length: 204 Bit Score: 41.98 E-value: 8.28e-05
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S4 | cd00165 | S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, ... |
89-148 | 2.63e-04 | |||
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes. Pssm-ID: 238095 [Multi-domain] Cd Length: 70 Bit Score: 38.00 E-value: 2.63e-04
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Name | Accession | Description | Interval | E-value | |||
rps4 | CHL00113 | ribosomal protein S4; Reviewed |
1-148 | 5.18e-09 | |||
ribosomal protein S4; Reviewed Pssm-ID: 177038 [Multi-domain] Cd Length: 201 Bit Score: 53.68 E-value: 5.18e-09
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S4 | smart00363 | S4 RNA-binding domain; |
88-146 | 7.05e-08 | |||
S4 RNA-binding domain; Pssm-ID: 214638 [Multi-domain] Cd Length: 60 Bit Score: 47.59 E-value: 7.05e-08
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S4 | pfam01479 | S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was ... |
89-135 | 9.15e-08 | |||
S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation. The S4 domain probably mediates binding to RNA. Pssm-ID: 396182 [Multi-domain] Cd Length: 48 Bit Score: 47.10 E-value: 9.15e-08
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RpsD | COG0522 | Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ... |
1-135 | 8.28e-05 | |||
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit Pssm-ID: 440288 [Multi-domain] Cd Length: 204 Bit Score: 41.98 E-value: 8.28e-05
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S4 | cd00165 | S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, ... |
89-148 | 2.63e-04 | |||
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes. Pssm-ID: 238095 [Multi-domain] Cd Length: 70 Bit Score: 38.00 E-value: 2.63e-04
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Blast search parameters | ||||
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