|
Name |
Accession |
Description |
Interval |
E-value |
| DMC1 |
cd19514 |
homologous-pairing protein DMC1; DMC1 has a central role in homologous recombination in ... |
22-249 |
0e+00 |
|
homologous-pairing protein DMC1; DMC1 has a central role in homologous recombination in meiosis. It assembles at the sites of programmed DNA double-strand breaks and carries out a search for allelic DNA sequences located on homologous chromatids. It forms octameric rings.
Pssm-ID: 410922 [Multi-domain] Cd Length: 236 Bit Score: 504.58 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 22 KLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGADGYSGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVL 101
Cdd:cd19514 10 KLLGGGIESMSITEVFGEFRTGKTQLSHTLCVTAQLPGSMGGGGGKVAYIDTEGTFRPDRIRPIAERFGVDHDAVLDNIL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 102 YARAYTSEHQMELLDYVAAKFHEEAgIFKLLIVDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQ 181
Cdd:cd19514 90 YARAYTSEHQMELLDYVAAKFHEEA-VFRLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFITNQ 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958790575 182 MTADPGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITTGGIGD 249
Cdd:cd19514 169 VTADPGAAMTFQADPKKPIGGHILAHASTTRISLRKGRGEERIAKIYDSPDLPENEATFAITAGGIAD 236
|
|
| recomb_DMC1 |
TIGR02238 |
meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA ... |
22-250 |
3.61e-159 |
|
meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Pssm-ID: 131292 [Multi-domain] Cd Length: 313 Bit Score: 443.84 E-value: 3.61e-159
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 22 KLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGADGYSGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVL 101
Cdd:TIGR02238 87 GILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNIL 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 102 YARAYTSEHQMELLDYVAAKFHEEagIFKLLIVDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQ 181
Cdd:TIGR02238 167 YARAYTSEHQMELLDYLAAKFSEE--PFRLLIVDSIMALFRVDFSGRGELSERQQKLAQMLSRLNKISEEFNVAVFVTNQ 244
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958790575 182 MTADPGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITTGGIGDA 250
Cdd:TIGR02238 245 VQADPGATMTFIADPKKPIGGHVLAHASTTRILLRKGRGEERVAKLYDSPDMPEAEASFQITEGGIADA 313
|
|
| Rad51_DMC1_archRadA |
cd01123 |
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic ... |
19-248 |
1.61e-153 |
|
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal protein RadA. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Pssm-ID: 410868 [Multi-domain] Cd Length: 234 Bit Score: 426.56 E-value: 1.61e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 19 NLFKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGADGYSGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLD 98
Cdd:cd01123 7 ELDKLLGGGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAIYIDTEGTFRPERLRAIAQRFGLDPDDVLD 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 99 NVLYARAYTSEHQMELLDYVAAKFHEEagIFKLLIVDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFV 178
Cdd:cd01123 87 NVAYARAFNSDHQTQLLDQAAAMMVES--RFKLLIVDSATALYRTDYSGRGELSARQMHLAKFLRMLQRLADEFGVAVVV 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 179 TNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITTGGIG 248
Cdd:cd01123 165 TNQVVAQVDGAMMFAADPKKPIGGNILAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAVFAITADGVG 234
|
|
| PTZ00035 |
PTZ00035 |
Rad51 protein; Provisional |
22-252 |
1.43e-149 |
|
Rad51 protein; Provisional
Pssm-ID: 185407 [Multi-domain] Cd Length: 337 Bit Score: 420.56 E-value: 1.43e-149
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 22 KLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGADGYSGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVL 101
Cdd:PTZ00035 109 KLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIA 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 102 YARAYTSEHQMELLDYVAAKFHEEAgiFKLLIVDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQ 181
Cdd:PTZ00035 189 YARAYNHEHQMQLLSQAAAKMAEER--FALLIVDSATALFRVDYSGRGELAERQQHLGKFLRALQKLADEFNVAVVITNQ 266
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958790575 182 MTADPGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITTGGIGDAKE 252
Cdd:PTZ00035 267 VMADVDGASMFVADPKKPIGGHIIAHASTTRLSLRKGRGEQRICKIYDSPNLPESEAVFAISEGGIIDAKD 337
|
|
| Rad51 |
pfam08423 |
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ... |
22-250 |
1.53e-141 |
|
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ATPase RecA protein.
Pssm-ID: 462471 [Multi-domain] Cd Length: 255 Bit Score: 397.06 E-value: 1.53e-141
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 22 KLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGADGYSGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVL 101
Cdd:pfam08423 28 KLLGGGIETGSITEIFGEFRTGKTQLCHTLCVTCQLPLEMGGGEGKALYIDTEGTFRPERLVAIAERYGLDPEDVLDNVA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 102 YARAYTSEHQMELLDYVAAKFHEEAgiFKLLIVDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQ 181
Cdd:pfam08423 108 YARAYNSEHQMQLLQQAAAMMSESR--FALLIVDSATALYRTDFSGRGELAERQQHLAKFLRTLQRLADEFGVAVVITNQ 185
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 182 MTADP-GATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITTGGIGDA 250
Cdd:pfam08423 186 VVAQVdGAAGMFSGDPKKPIGGHIMAHASTTRLSLRKGRGEQRICKIYDSPCLPESEAVFAIGSGGIIDP 255
|
|
| Rad51 |
cd19513 |
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous ... |
19-249 |
3.74e-131 |
|
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51 is recruited to the break site with the help of its paralogs, RAD51D, RAD51B, RAD51C, XRCC3, and XRCC2, where it forms long helical polymers which wrap around the ssDNA tail at the break which leads to pairing and strand invasion.
Pssm-ID: 410921 [Multi-domain] Cd Length: 235 Bit Score: 370.11 E-value: 3.74e-131
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 19 NLFKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGADGYSGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLD 98
Cdd:cd19513 7 ELDKLLGGGIETGSITELFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNGEDVLD 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 99 NVLYARAYTSEHQMELLDYVAAKFHEEAgiFKLLIVDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFV 178
Cdd:cd19513 87 NVAYARAYNTDHQMQLLIQASAMMAESR--YALLIVDSATALYRTDYSGRGELSARQMHLAKFLRMLQRLADEFGVAVVI 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958790575 179 TNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITTGGIGD 249
Cdd:cd19513 165 TNQVVAQVDGAAMFAGDPKKPIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAVFAITEDGIGD 235
|
|
| PLN03187 |
PLN03187 |
meiotic recombination protein DMC1 homolog; Provisional |
23-252 |
1.81e-128 |
|
meiotic recombination protein DMC1 homolog; Provisional
Pssm-ID: 215620 [Multi-domain] Cd Length: 344 Bit Score: 367.18 E-value: 1.81e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 23 LLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGADGYSGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLY 102
Cdd:PLN03187 118 LLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIY 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 103 ARAYTSEHQMELLDYVAAKFHEEAgiFKLLIVDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 182
Cdd:PLN03187 198 ARAYTYEHQYNLLLGLAAKMAEEP--FRLLIVDSVIALFRVDFTGRGELAERQQKLAQMLSRLTKIAEEFNVAVYMTNQV 275
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 183 TADPGAtMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITTGGIGDAKE 252
Cdd:PLN03187 276 IADPGG-GMFISDPKKPAGGHVLAHAATIRLMLRKGKGEQRVCKVFDAPNLPEAEAEFQITSGGIMDAKD 344
|
|
| recomb_RAD51 |
TIGR02239 |
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein ... |
19-252 |
1.43e-119 |
|
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Pssm-ID: 274048 [Multi-domain] Cd Length: 316 Bit Score: 343.63 E-value: 1.43e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 19 NLFKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGADGYSGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLD 98
Cdd:TIGR02239 84 ELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLD 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 99 NVLYARAYTSEHQMELLDYVAAKFHEEAgiFKLLIVDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFV 178
Cdd:TIGR02239 164 NVAYARAYNTDHQLQLLQQAAAMMSESR--FALLIVDSATALYRTDFSGRGELSARQMHLARFLRSLQRLADEFGVAVVI 241
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958790575 179 TNQMTADP-GATMTFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITTGGIGDAKE 252
Cdd:TIGR02239 242 TNQVVAQVdGAGSMFAGDPKKPIGGNIMAHASTTRLSLRKGRGEQRICKIYDSPCLPESEAMFAIYEDGIGDPKE 316
|
|
| PLN03186 |
PLN03186 |
DNA repair protein RAD51 homolog; Provisional |
20-252 |
8.92e-115 |
|
DNA repair protein RAD51 homolog; Provisional
Pssm-ID: 178728 [Multi-domain] Cd Length: 342 Bit Score: 332.47 E-value: 8.92e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 20 LFKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGADGYSGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDN 99
Cdd:PLN03186 112 LDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLEN 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 100 VLYARAYTSEHQMELLDYVAAKFHEEAgiFKLLIVDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVT 179
Cdd:PLN03186 192 VAYARAYNTDHQSELLLEAASMMAETR--FALMIVDSATALYRTEFSGRGELSARQMHLGKFLRSLQRLADEFGVAVVIT 269
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958790575 180 NQMTADPGAtMTFQADPK-KPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITTGGIGDAKE 252
Cdd:PLN03186 270 NQVVAQVDG-SAFFAGPQlKPIGGNIMAHASTTRLALRKGRGENRICKVISSPCLPEAEARFSISSEGVTDVKD 342
|
|
| radA |
PRK04301 |
DNA repair and recombination protein RadA; Validated |
19-250 |
4.40e-107 |
|
DNA repair and recombination protein RadA; Validated
Pssm-ID: 235273 [Multi-domain] Cd Length: 317 Bit Score: 312.20 E-value: 4.40e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 19 NLFKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGADGYSGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLD 98
Cdd:PRK04301 90 ELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLD 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 99 NVLYARAYTSEHQMELLDYvAAKFHEEAGIFKLLIVDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFV 178
Cdd:PRK04301 170 NIHVARAYNSDHQMLLAEK-AEELIKEGENIKLVIVDSLTAHFRAEYVGRGNLAERQQKLNKHLHDLLRLADLYNAAVVV 248
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958790575 179 TNQMTADPGAtmtFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITTGGIGDA 250
Cdd:PRK04301 249 TNQVMARPDA---FFGDPTQPIGGHILGHTATFRIYLRKSKGNKRIARLVDSPHLPEGEAVFRITEEGIRDA 317
|
|
| archRadA |
cd19515 |
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a ... |
19-249 |
2.96e-105 |
|
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a homolog of Rad51. RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR)
Pssm-ID: 410923 [Multi-domain] Cd Length: 233 Bit Score: 304.29 E-value: 2.96e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 19 NLFKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGADGYSGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLD 98
Cdd:cd19515 7 ELDKLLGGGIETQAITEVFGEFGSGKTQLCHQLAVNVQLPPEEGGLNGKAVYIDTENTFRPERIMQMAKALGLDPDEVLD 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 99 NVLYARAYTSEHQMELLDYVAAKFHEEAGIfKLLIVDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFV 178
Cdd:cd19515 87 NIYVARAYNSNHQMLLVEKAEDLIKEGNNI-KLLIVDSLTSHFRAEYVGRGTLAERQQKLNKHLHDLHRLADLYNIAVLV 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958790575 179 TNQMTADPGAtmtFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITTGGIGD 249
Cdd:cd19515 166 TNQVMAKPDA---FFGDPTQAIGGHILGHAATFRVYLRKGKGGKRIARLVDSPHLPEGEAVFRITEKGIED 233
|
|
| recomb_radA |
TIGR02236 |
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA ... |
19-249 |
1.03e-101 |
|
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 131290 [Multi-domain] Cd Length: 310 Bit Score: 298.20 E-value: 1.03e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 19 NLFKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGADGYSGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLD 98
Cdd:TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLK 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 99 NVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIVDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFV 178
Cdd:TIGR02236 163 NIYVARAYNSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVGRGALAERQQKLNKHLHDLLRLADLYNAAVVV 242
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958790575 179 TNQMTADPGAtmtFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITTGGIGD 249
Cdd:TIGR02236 243 TNQVMARPDA---FFGDPTRPIGGHILGHAATFRVYLRKGKGDKRIARLVDSPHLPEGEAVFRITEKGIED 310
|
|
| RecA-like |
cd01393 |
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
33-217 |
2.79e-47 |
|
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs RadA and RadB.
Pssm-ID: 410881 [Multi-domain] Cd Length: 185 Bit Score: 155.20 E-value: 2.79e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 33 ITEAFGEFRTGKTQLSHTLCVTAQLpgadgySGGKIIFIDTENTFRPDRLRDIA---DRFNVDHDAVLDNVLYARAYTSE 109
Cdd:cd01393 3 ITEIYGPPGSGKTQLALQLAANALL------LGGGVVWIDTEGAFPPSRLVQILeasPSSELELAEALSRLLYFRPPDTL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 110 HQMELLDYvaakfHEEAGI----FKLLIVDSIMALFRVDF----SGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQ 181
Cdd:cd01393 77 AHLLALDS-----LPESLFpppnTSLVVVDSVSALFRKAFprggDGDSSSSLRARLLSQLARALQKLAAQFNLAVVVTNQ 151
|
170 180 190
....*....|....*....|....*....|....*.
gi 1958790575 182 MTADPGAtmTFQADPKKPIGGHILAHASTTRISLRK 217
Cdd:cd01393 152 VTTKIRG--GSGASLVPPALGNTWEHSVSTRLLLYR 185
|
|
| XRCC3 |
cd19491 |
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells ... |
20-217 |
4.40e-41 |
|
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells 3) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC3, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410899 [Multi-domain] Cd Length: 250 Bit Score: 141.28 E-value: 4.40e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 20 LFKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGADGYSGGKIIFIDTENTFRPDRLRDIADRF-----NVDHD 94
Cdd:cd19491 1 LDELLGGGIPVGGITEIAGESGAGKTQLCLQLALTVQLPRELGGLGGGAVYICTESSFPSKRLQQLASSLpkryhLEKAK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 95 AVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIfKLLIVDSIMALFRVDF-SGRGELAERQQKLAQMLSRLQKISEEYN 173
Cdd:cd19491 81 NFLDNIFVEHVADLETLEHCLNYQLPALLERGPI-RLVVIDSIAALFRSEFdTSRSDLVERAKYLRRLADHLKRLADKYN 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958790575 174 VAVFVTNQMTADPGA---------------TMTFQADP----KKPIGGHILAHASTTRISLRK 217
Cdd:cd19491 160 LAVVVVNQVTDRFDSssdasglgvldylsqFSSFSGGVsgnrKVPALGLTWANLVNTRLMLSR 222
|
|
| radB |
PRK09361 |
DNA repair and recombination protein RadB; Provisional |
22-247 |
8.27e-40 |
|
DNA repair and recombination protein RadB; Provisional
Pssm-ID: 236482 [Multi-domain] Cd Length: 225 Bit Score: 137.30 E-value: 8.27e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 22 KLLGGGIESMAITEAFGEFRTGKTqlshTLCVTAQLPGADgySGGKIIFIDTENtFRPDRLRDIADRfnvDHDAVLDNVL 101
Cdd:PRK09361 14 ELLGGGFERGTITQIYGPPGSGKT----NICLQLAVEAAK--NGKKVIYIDTEG-LSPERFKQIAGE---DFEELLSNII 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 102 YARAYTSEHQ----MELLDYVAAKFheeagifKLLIVDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVF 177
Cdd:PRK09361 84 IFEPSSFEEQseaiRKAEKLAKENV-------GLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARKHDLAVV 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958790575 178 VTNQMTADPGATMTfqadpkKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE-ATFAITTGGI 247
Cdd:PRK09361 157 ITNQVYSDIDSDGL------RPLGGHTLEHWSKTILRLEKFRNGKRRATLEKHRSRPEGEsAEFRITDRGI 221
|
|
| archRadB |
cd01394 |
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional ... |
22-247 |
2.89e-36 |
|
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional homologue to the bacterial RecA. The precise function of RadB is unclear.
Pssm-ID: 410882 [Multi-domain] Cd Length: 216 Bit Score: 127.82 E-value: 2.89e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 22 KLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAqlpgadGYSGGKIIFIDTENtFRPDRLRDIA-DRFnvdhDAVLDNV 100
Cdd:cd01394 10 SLLGGGVERGTITQIYGPPGSGKTNICLQLAVEA------AKQGKKVVYIDTEG-LSPERFQQIAgERF----ESIASNI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 101 LYARAYTSEHQMELLDYvAAKFhEEAGIFKLLIVDSIMALFRVDfsgRGELAERQQKLAQMLSRLQKISEEYNVAVFVTN 180
Cdd:cd01394 79 IVFEPYSFDEQGVAIQE-AEKL-LKSDKVDLVVVDSATALYRLE---LGDDSEANRELSRQMSKLLSIARKYDIPVVITN 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958790575 181 QMTADpgatmtFQADPKKPIGGHILAHASTTRISLRKGRGELRIAKIYDSPEMPENE-ATFAITTGGI 247
Cdd:cd01394 154 QVYSD------IDDDRLKPVGGTLLEHWSKAIIRLEKSPPGLRRATLEKHRSRPEGQsAGFRITDRGI 215
|
|
| Rad51B |
cd19493 |
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
22-231 |
1.02e-33 |
|
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51B, together with the other RAD51 paralogs, RAD51C, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410901 [Multi-domain] Cd Length: 222 Bit Score: 121.27 E-value: 1.02e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 22 KLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGADGYSGGKIIFIDTENTFRPDRLRDIA-----------DRFN 90
Cdd:cd19493 2 TALAGGLPLGAITEITGASGSGKTQFALTLASSAAMPARKGGLDGGVLYIDTESKFSAERLAEIAearfpeafsgfMEEN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 91 VDHDAVLDNVLYARAYTSEhqmELLDYVAAKFHE--EAGIfKLLIVDSIMALFRVDFSG-RGELAERQQKLAQMLSRLQK 167
Cdd:cd19493 82 ERAEEMLKRVAVVRVTTLA---QLLERLPNLEEHilSSGV-RLVVIDSIAALVRREFGGsDGEVTERHNALAREASSLKR 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958790575 168 ISEEYNVAVFVTNQMTADPGATMTFQADPKKPIgGHILAHASTTRISLRKGRG-ELRIAKIYDSP 231
Cdd:cd19493 158 LAEEFRIAVLVTNQATTHFGDAGDGSSGVTAAL-GDAWAHAVNTRLRLERCLLqLRRVLEIVKSP 221
|
|
| recomb_radB |
TIGR02237 |
DNA repair and recombination protein RadB; This family consists exclusively of archaeal RadB ... |
23-247 |
2.33e-31 |
|
DNA repair and recombination protein RadB; This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Pssm-ID: 274047 [Multi-domain] Cd Length: 209 Bit Score: 114.82 E-value: 2.33e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 23 LLGGGIESMAITEAFGEFRTGKTqlshTLCVTAQLPGADgySGGKIIFIDTENtFRPDRLRDIADRfnvDHDAVLDNVLY 102
Cdd:TIGR02237 4 LLGGGVERGTITQIYGPPGSGKT----NICMILAVNAAR--QGKKVVYIDTEG-LSPERFKQIAED---RPERALSNFIV 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 103 ARAYTSEHQMELLDYvAAKFHEEAGiFKLLIVDSIMALFRVDFSGRGELAERQqkLAQMLSRLQKISEEYNVAVFVTNQM 182
Cdd:TIGR02237 74 FEVFDFDEQGVAIQK-TSKFIDRDS-ASLVVVDSFTALYRLELSDDRISRNRE--LARQLTLLLSLARKKNLAVVITNQV 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958790575 183 TADPGatmtfqADPKKPIGGHILAHASTTRISLRKGRGElRIAKIYDSPEMPENE-ATFAITTGGI 247
Cdd:TIGR02237 150 YTDVN------NGTLRPLGGHLLEHWSKVILRLEKFRGR-RLATLEKHRSRPEGEsVYFRITDDGI 208
|
|
| Rad51C |
cd19492 |
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
33-231 |
4.93e-29 |
|
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51C, together with the other RAD51 paralogs, RAD51B, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site. Additionally, RAD51C acts as a mediator in the early steps of DNA damage signaling.
Pssm-ID: 410900 [Multi-domain] Cd Length: 172 Bit Score: 107.70 E-value: 4.93e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 33 ITEAFGEFRTGKTQLSHTLCVTAQLPGADGYSGGKIIFIDTENTFrpdrlrdiadrfnvdhdavldNVLYARAYTSEHQM 112
Cdd:cd19492 3 ITEICGVPGVGKTQLCMQLAVNVQIPKCFGGLAGEAIYIDTEGSF---------------------NIHYFRVHDYVELL 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 113 ELLDYVAAKFHEEAGIfKLLIVDSIMALFRVDFSGrgeLAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTF 192
Cdd:cd19492 62 ALINSLPKFLEDHPKV-KLIVVDSIAFPFRHDFDD---LAQRTRLLNGLAQLLHSLARQHNLAVVLTNQVTTKISEDGQS 137
|
170 180 190
....*....|....*....|....*....|....*....
gi 1958790575 193 QAdpkKPIGGHILAHASTTRISLRKGRGElRIAKIYDSP 231
Cdd:cd19492 138 QL---VPALGESWSHACTTRLFLTWDEKQ-RFAHLYKSP 172
|
|
| RecA |
COG0468 |
RecA/RadA recombinase [Replication, recombination and repair]; |
18-218 |
9.61e-27 |
|
RecA/RadA recombinase [Replication, recombination and repair];
Pssm-ID: 440236 [Multi-domain] Cd Length: 351 Bit Score: 106.02 E-value: 9.61e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 18 INLFKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLpgadgySGGKIIFIDTENTFRPDRlrdiADRFNVDhdav 96
Cdd:COG0468 49 LALDIALGvGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK------AGGIAAFIDAEHALDPEY----AKKLGVD---- 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 97 LDNVLYARAYTSEHQMELLDYVAakfheEAGIFKLLIVDSIMALF-RVDFSGR---GELAERQQKLAQMLSRLQKISEEY 172
Cdd:COG0468 115 IDNLLVSQPDTGEQALEIAETLV-----RSGAVDLIVVDSVAALVpKAEIEGEmgdSHVGLQARLMSQALRKLTGAISKS 189
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1958790575 173 NVAVFVTNQMTADPGatMTFqADPKKPIGGHILAHASTTRISLRKG 218
Cdd:COG0468 190 NTTVIFINQLREKIG--VMF-GNPETTTGGNALKFYASVRLDIRRI 232
|
|
| Rad51D |
cd19489 |
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
25-217 |
1.93e-21 |
|
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51D, together with the other RAD51 paralogs, RAD51B, RAD51C, XRCC3, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410897 [Multi-domain] Cd Length: 209 Bit Score: 88.85 E-value: 1.93e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 25 GGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLpgadgYSGGKIIFIDTENTFRPDRLRDIAD-RFNVDH--DAVLDNVL 101
Cdd:cd19489 1 GGGLRTGEITELVGESSSGKTQLCLTAAANVAS-----RSGQNVLYIDTKSSFSARRLAQILKsRAQDAEeiDKALQRIR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 102 YARAYTSEHQMELLDYVAAKFHEE----AGIFKLLIVDSIMALFRVDFSGrgelAERQQKLAQM--LSR-LQKISEEYNV 174
Cdd:cd19489 76 VVRVFDPYELLDLLEELRNTLSQQqenlYSRLKLVIIDSLSALISPLLGG----SKHSEGHALLasLARlLKKLAAEYQI 151
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1958790575 175 AVFVTNQMTADPGatMTFQADPkKPIGGHILAHASTTRISLRK 217
Cdd:cd19489 152 AVLVTNLTVRGGD--GGQQGST-KPALGEYWESVPSTRLLLSR 191
|
|
| XRCC2 |
cd19490 |
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells ... |
42-217 |
7.45e-13 |
|
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells 2) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC2, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC3, helps recruit RAD51 to the break site.
Pssm-ID: 410898 [Multi-domain] Cd Length: 226 Bit Score: 65.83 E-value: 7.45e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 42 TGKTQLSHTLCVTAQLPGADG--YSGGK---IIFIDTENTFRPDRLRDIAD-RFN------------VDHDAV----LDN 99
Cdd:cd19490 12 SGKTELLYHLAARCILPSSWGgvPLGGLeaaVVFIDTDGRFDILRLRSILEaRIRaaiqaanssddeEDVEEIarecLQR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 100 VLYARAYTSEH---QMELLDYVAAK--FHEEAGifkLLIVDSIMALFRVDFSGRGELAERQQK----LAQMLSRLQKISE 170
Cdd:cd19490 92 LHIFRCHSSLQllaTLLSLENYLLSlsANPELG---LLLIDSISAFYWQDRFSAELARAAPLLqeaaLRAILRELRRLRR 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958790575 171 EYNVAVFVTNQM-----------TADPGATMTFQADPKKPIGGHILAHASTTRISLRK 217
Cdd:cd19490 169 RFQLVVIATKQAlfpgksastdnPAANNAVSKASAPSHREYLPRPWQRLVTHRLVLSR 226
|
|
| RecA |
pfam00154 |
recA bacterial DNA recombination protein; RecA is a DNA-dependent ATPase and functions in DNA ... |
24-238 |
1.76e-07 |
|
recA bacterial DNA recombination protein; RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyzes an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Pssm-ID: 425488 [Multi-domain] Cd Length: 262 Bit Score: 50.86 E-value: 1.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 24 LG-GGIESMAITEAFGEFRTGKTQLshTLCVTAQLPGAdgysGGKIIFIDTENTFRPdrlrDIADRFNVDhdavLDNVLY 102
Cdd:pfam00154 44 LGiGGYPKGRIIEIYGPESSGKTTL--ALHAIAEAQKA----GGTAAFIDAEHALDP----VYAKKLGVD----IDNLLV 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 103 ARAYTSEHQMELLDYVAakfheEAGIFKLLIVDSIMALF-RVDFSgrGELAERQQKL-AQMLSR-LQKIS---EEYNVAV 176
Cdd:pfam00154 110 SQPDTGEQALEIADMLV-----RSGAIDLIVVDSVAALVpKAEIE--GEMGDSHVGLqARLMSQaLRKLTgsiSKSNTTV 182
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958790575 177 FVTNQMTADPGatMTFqADPKKPIGGHILAHASTTRISLRkgrgelRIAKIYDSPEMPENEA 238
Cdd:pfam00154 183 IFINQIREKIG--VMF-GNPETTTGGRALKFYASVRLDIR------RIGQIKQGEEVIGNKT 235
|
|
| RecA |
cd00983 |
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
18-218 |
4.45e-07 |
|
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Pssm-ID: 410863 [Multi-domain] Cd Length: 235 Bit Score: 49.48 E-value: 4.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 18 INLFKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQlpgadgYSGGKIIFIDTENTFRPdrlrDIADRFNVDhdav 96
Cdd:cd00983 10 LSLDIALGiGGLPRGRIIEIYGPESSGKTTLALHAIAEAQ------KLGGTAAFIDAEHALDP----EYAKKLGVD---- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 97 LDNVLYARAYTSEHQMELLDYVAakfheEAGIFKLLIVDSIMALF-RVDFSgrGELAERQQKL-AQMLSR-LQKIS---E 170
Cdd:cd00983 76 IDNLLVSQPDTGEQALEIADTLI-----RSGAVDLIVVDSVAALVpKAEIE--GEMGDSHVGLqARLMSQaLRKLTgslS 148
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1958790575 171 EYNVAVFVTNQMTADPGatmTFQADPKKPIGGHILAHASTTRISLRKG 218
Cdd:cd00983 149 KSKTTVIFINQLREKIG---VMFGNPETTTGGNALKFYASVRLDIRRI 193
|
|
| KaiC-like |
cd01124 |
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. ... |
22-247 |
1.27e-05 |
|
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410869 [Multi-domain] Cd Length: 222 Bit Score: 44.95 E-value: 1.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 22 KLLGGGIESMAITEAFGEFRTGKTqlshTLC---VTAQLPgadgySGGKIIFIDTENTfrPDRLRDIADRFNVDHDA--V 96
Cdd:cd01124 10 ELLGGGIPKGSVTLLTGGPGTGKT----LFGlqfLYAGAK-----NGEPGLFFTFEES--PERLLRNAKSFGWDFDEmeD 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 97 LDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKL--LIVDSIMALFRvdfsgrgeLAERQQKLAQMLSRLQKISEEYNV 174
Cdd:cd01124 79 EGKLIIVDAPPTEAGRFSLDELLSRILSIIKSFKAkrVVIDSLSGLRR--------AKEDQMRARRIVIALLNELRAAGV 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958790575 175 AVFVTNQMTADPGATMTfqadpkkpiGGHILAHASTTRISLRK--GRGE----LRIAKIYDSPEMPEnEATFAITTGGI 247
Cdd:cd01124 151 TTIFTSEMRSFLSSESA---------GGGDVSFIVDGVILLRYveIEGElrrtIRVLKMRGTGHDTG-THPFEITDKGI 219
|
|
| AAA_25 |
pfam13481 |
AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins. |
10-179 |
4.55e-03 |
|
AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins.
Pssm-ID: 463892 [Multi-domain] Cd Length: 193 Bit Score: 36.98 E-value: 4.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 10 WRRLKRQPINLFKLLGGGIESMAITEAFGEFRTGKT----QLShtLCVTAQLPGADGY---SGGKIIFIDTENTFR--PD 80
Cdd:pfam13481 12 ADGLAAPPPPRRWLIKGLLPAGGLGLLAGAPGTGKTtlalDLA--AAVATGKPWLGGPrvpEQGKVLYVSAEGPADelRR 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958790575 81 RLRDIADRFNVD-----HDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIfKLLIVDSIMALFRVDFSGRGElaerq 155
Cdd:pfam13481 90 RLRAAGADLDLParllfLSLVESLPLFFLDRGGPLLDADVDALEAALEEVEDP-DLVVIDPLARALGGDENSNSD----- 163
|
170 180
....*....|....*....|....
gi 1958790575 156 qkLAQMLSRLQKISEEYNVAVFVT 179
Cdd:pfam13481 164 --VGRLVKALDRLARRTGATVLLV 185
|
|
| |
