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Conserved domains on  [gi|1958791449|ref|XP_038935851|]
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YY1-associated factor 2 isoform X2 [Rattus norvegicus]

Protein Classification

YAF2_RYBP domain-containing protein( domain architecture ID 12183029)

YAF2_RYBP domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
YAF2_RYBP pfam17219
Yaf2/RYBP C-terminal binding motif; This motif is found in the Yaf2 and RYBP proteins that are ...
57-88 6.21e-13

Yaf2/RYBP C-terminal binding motif; This motif is found in the Yaf2 and RYBP proteins that are homologous parts of the PRC1 complex. This motif forms a beta hairpin structure when it binds to the RAWUL domain pfam16207.


:

Pssm-ID: 465386  Cd Length: 33  Bit Score: 58.55  E-value: 6.21e-13
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1958791449  57 RPRLKNVDRSSAQHLEVTVGDLTVIITDFKEK 88
Cdd:pfam17219   1 RPRLKNVDRSSAQTRAVTVNNVTVIITEFKPK 32
 
Name Accession Description Interval E-value
YAF2_RYBP pfam17219
Yaf2/RYBP C-terminal binding motif; This motif is found in the Yaf2 and RYBP proteins that are ...
57-88 6.21e-13

Yaf2/RYBP C-terminal binding motif; This motif is found in the Yaf2 and RYBP proteins that are homologous parts of the PRC1 complex. This motif forms a beta hairpin structure when it binds to the RAWUL domain pfam16207.


Pssm-ID: 465386  Cd Length: 33  Bit Score: 58.55  E-value: 6.21e-13
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1958791449  57 RPRLKNVDRSSAQHLEVTVGDLTVIITDFKEK 88
Cdd:pfam17219   1 RPRLKNVDRSSAQTRAVTVNNVTVIITEFKPK 32
 
Name Accession Description Interval E-value
YAF2_RYBP pfam17219
Yaf2/RYBP C-terminal binding motif; This motif is found in the Yaf2 and RYBP proteins that are ...
57-88 6.21e-13

Yaf2/RYBP C-terminal binding motif; This motif is found in the Yaf2 and RYBP proteins that are homologous parts of the PRC1 complex. This motif forms a beta hairpin structure when it binds to the RAWUL domain pfam16207.


Pssm-ID: 465386  Cd Length: 33  Bit Score: 58.55  E-value: 6.21e-13
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1958791449  57 RPRLKNVDRSSAQHLEVTVGDLTVIITDFKEK 88
Cdd:pfam17219   1 RPRLKNVDRSSAQTRAVTVNNVTVIITEFKPK 32
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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