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Conserved domains on  [gi|1958647570|ref|XP_038938826|]
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ataxin-2-like protein isoform X4 [Rattus norvegicus]

Protein Classification

SM-ATX and LsmAD domain-containing protein( domain architecture ID 13860551)

SM-ATX and LsmAD domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
SM-ATX pfam14438
Ataxin 2 SM domain; This SM domain is found in Ataxin-2.
117-190 3.36e-19

Ataxin 2 SM domain; This SM domain is found in Ataxin-2.


:

Pssm-ID: 464173  Cd Length: 78  Bit Score: 82.99  E-value: 3.36e-19
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958647570  117 MLHFLTAVVGSTCDVKVKNGTTYEGIFKTLS--SKFELAVDAVHRKASE--PAGGPRREDIVDTMVFKPSDVLLVHFR 190
Cdd:pfam14438    1 LLFLLTSLVGLVVEVTTKNGEVYEGIFSTASleKDFGVVLKMARRIKKSngSGLNPVRGEIVDTMIFPAKDIVDIEAK 78
LsmAD pfam06741
LsmAD domain; This domain is found associated with Lsm domain.
258-320 1.58e-17

LsmAD domain; This domain is found associated with Lsm domain.


:

Pssm-ID: 461998 [Multi-domain]  Cd Length: 65  Bit Score: 77.61  E-value: 1.58e-17
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958647570  258 YGVKTTYDSSLssYTVPLEKdNSEEFRQRELRAAQLAREIESSPQYRLRIAMEN-----DDGRTEEEK 320
Cdd:pfam06741    1 FGVKSTYDENL--YTTKLDR-SSPDYKEREAEAERIAREIEGSASTNAHVAEERgldvdDSGLDEEDK 65
PAT1 super family cl37801
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
745-964 4.62e-11

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


The actual alignment was detected with superfamily member pfam09770:

Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 66.98  E-value: 4.62e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  745 PPQRSDQHQPASAPPMMQAAAAAAGPPLVAATPYSSyiPYNPQQFPGQPAMMQPMA--------------HYPSQPVFAP 810
Cdd:pfam09770  107 PAARAAQSSAQPPASSLPQYQYASQQSQQPSKPVRT--GYEKYKEPEPIPDLQVDAslwgvapkkaaapaPAPQPAAQPA 184
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  811 MLQSNPRMLTS--------------------GSHPQAIVSSSTPQYPSAEQPTPQALYATVHQSYPHHATQL--HGHQPQ 868
Cdd:pfam09770  185 SLPAPSRKMMSleeveaamraqakkpaqqpaPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHpgQGHPVT 264
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  869 PATTPTGSQPQSQHAAPSPVQHQAGQAPHLGSGQPQQNLYHPGALTGTPPSLPPGPSAQSPqssfPQPAavyaiHPHQQL 948
Cdd:pfam09770  265 ILQRPQSPQPDPAQPSIQPQAQQFHQQPPPVPVQPTQILQNPNRLSAARVGYPQNPQPGVQ----PAPA-----HQAHRQ 335
                          250
                   ....*....|....*.
gi 1958647570  949 PHGFTNMAHVTQAHVQ 964
Cdd:pfam09770  336 QGSFGRQAPIITHPQQ 351
PHA03247 super family cl33720
large tegument protein UL36; Provisional
584-1027 5.53e-06

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.09  E-value: 5.53e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  584 PMGSPVSSKAESILDKEDKVPLAAVAGSEGPEQLQPPCPSQTGSPPVGLIKGDDKEEGPVTEQVKKSTLNPNAKEFNPTK 663
Cdd:PHA03247  2589 PDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRAR 2668
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  664 PLLSVNKSTSTPTSPGPRTHSTPSIPVltagqSGLYSPQyisyipqihmgPAVQAPQMYPYPVSNSVPGQQGKYRGAKGS 743
Cdd:PHA03247  2669 RLGRAAQASSPPQRPRRRAARPTVGSL-----TSLADPP-----------PPPPTPEPAPHALVSATPLPPGPAAARQAS 2732
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  744 LPPQRSDQHQPASAPPMMQAAAAAAGPPLVAATPYSSYIPYNPqqfpgqPAMMQPMAHYPSQPVFAPMLQSNPRMLTSGS 823
Cdd:PHA03247  2733 PALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAP------AAGPPRRLTRPAVASLSESRESLPSPWDPAD 2806
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  824 HPQAIVSSSTPQYPSAEQPTPQALYATVHQSYPHHATQlhghQPQPATTPTGS---------QPQSQHAAPSPVQHQAGQ 894
Cdd:PHA03247  2807 PPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPG----PPPPSLPLGGSvapggdvrrRPPSRSPAAKPAAPARPP 2882
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  895 APHLGSGQPQQNlyhPGALTGTPPSLPPGPSAQSPQSSFPQPAAVYAIHPHQQLPhgftnmahvtqahvqtgvTAAPPPH 974
Cdd:PHA03247  2883 VRRLARPAVSRS---TESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPP------------------PPPRPQP 2941
                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1958647570  975 PGAPHPPQVMLLHPPQGHGGPPQGAVPPSGVPALSASTPSPYPYIGHPQGEQP 1027
Cdd:PHA03247  2942 PLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTP 2994
PHA03247 super family cl33720
large tegument protein UL36; Provisional
334-723 2.57e-05

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.78  E-value: 2.57e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  334 PSLVSREGKYIPLPQRVRegPRGGVRCSSSRGGRPGLSSLPPrGPHHLDNSSPGPGSEARGINGGPSRMSPKAQRPLRG- 412
Cdd:PHA03247  2580 PAVTSRARRPDAPPQSAR--PRAPVDDRGDPRGPAPPSPLPP-DTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDp 2656
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  413 ----------------GKTLSSPNNRPSGEASVPPTSAVGRMY----PPRSPKSAAPAPVSA------------SCPEPP 460
Cdd:PHA03247  2657 apgrvsrprrarrlgrAAQASSPPQRPRRRAARPTVGSLTSLAdpppPPPTPEPAPHALVSAtplppgpaaarqASPALP 2736
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  461 IGSAVASSASIPVTSSVVDPGAGSISPASPKLSLAPTDvkelPTKEPSRSLEAQELARIAGKVPGLQNeqKRFQLEELRK 540
Cdd:PHA03247  2737 AAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAA----PAAGPPRRLTRPAVASLSESRESLPS--PWDPADPPAA 2810
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  541 FGAQFKLQPSSSSETGLDPFPSRILKEEAKGKEKEVDgllTSDPMGSPVSSKAESILDKEDKVPLAAVAGSEGPEQLQPP 620
Cdd:PHA03247  2811 VLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPP---PSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLA 2887
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  621 CPSQTGSPPVGLIKGDDKEEGPvteqvkkstlNPNAKEFNPTKPLLSVNKSTSTPTSPGPRTHSTPSIPVLTAGQS---- 696
Cdd:PHA03247  2888 RPAVSRSTESFALPPDQPERPP----------QPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGepsg 2957
                          410       420
                   ....*....|....*....|....*..
gi 1958647570  697 GLYSPQYISYIPQIHMGPAVQAPQMYP 723
Cdd:PHA03247  2958 AVPQPWLGALVPGRVAVPRFRVPQPAP 2984
 
Name Accession Description Interval E-value
SM-ATX pfam14438
Ataxin 2 SM domain; This SM domain is found in Ataxin-2.
117-190 3.36e-19

Ataxin 2 SM domain; This SM domain is found in Ataxin-2.


Pssm-ID: 464173  Cd Length: 78  Bit Score: 82.99  E-value: 3.36e-19
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958647570  117 MLHFLTAVVGSTCDVKVKNGTTYEGIFKTLS--SKFELAVDAVHRKASE--PAGGPRREDIVDTMVFKPSDVLLVHFR 190
Cdd:pfam14438    1 LLFLLTSLVGLVVEVTTKNGEVYEGIFSTASleKDFGVVLKMARRIKKSngSGLNPVRGEIVDTMIFPAKDIVDIEAK 78
LsmAD pfam06741
LsmAD domain; This domain is found associated with Lsm domain.
258-320 1.58e-17

LsmAD domain; This domain is found associated with Lsm domain.


Pssm-ID: 461998 [Multi-domain]  Cd Length: 65  Bit Score: 77.61  E-value: 1.58e-17
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958647570  258 YGVKTTYDSSLssYTVPLEKdNSEEFRQRELRAAQLAREIESSPQYRLRIAMEN-----DDGRTEEEK 320
Cdd:pfam06741    1 FGVKSTYDENL--YTTKLDR-SSPDYKEREAEAERIAREIEGSASTNAHVAEERgldvdDSGLDEEDK 65
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
745-964 4.62e-11

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 66.98  E-value: 4.62e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  745 PPQRSDQHQPASAPPMMQAAAAAAGPPLVAATPYSSyiPYNPQQFPGQPAMMQPMA--------------HYPSQPVFAP 810
Cdd:pfam09770  107 PAARAAQSSAQPPASSLPQYQYASQQSQQPSKPVRT--GYEKYKEPEPIPDLQVDAslwgvapkkaaapaPAPQPAAQPA 184
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  811 MLQSNPRMLTS--------------------GSHPQAIVSSSTPQYPSAEQPTPQALYATVHQSYPHHATQL--HGHQPQ 868
Cdd:pfam09770  185 SLPAPSRKMMSleeveaamraqakkpaqqpaPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHpgQGHPVT 264
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  869 PATTPTGSQPQSQHAAPSPVQHQAGQAPHLGSGQPQQNLYHPGALTGTPPSLPPGPSAQSPqssfPQPAavyaiHPHQQL 948
Cdd:pfam09770  265 ILQRPQSPQPDPAQPSIQPQAQQFHQQPPPVPVQPTQILQNPNRLSAARVGYPQNPQPGVQ----PAPA-----HQAHRQ 335
                          250
                   ....*....|....*.
gi 1958647570  949 PHGFTNMAHVTQAHVQ 964
Cdd:pfam09770  336 QGSFGRQAPIITHPQQ 351
PHA03247 PHA03247
large tegument protein UL36; Provisional
584-1027 5.53e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.09  E-value: 5.53e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  584 PMGSPVSSKAESILDKEDKVPLAAVAGSEGPEQLQPPCPSQTGSPPVGLIKGDDKEEGPVTEQVKKSTLNPNAKEFNPTK 663
Cdd:PHA03247  2589 PDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRAR 2668
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  664 PLLSVNKSTSTPTSPGPRTHSTPSIPVltagqSGLYSPQyisyipqihmgPAVQAPQMYPYPVSNSVPGQQGKYRGAKGS 743
Cdd:PHA03247  2669 RLGRAAQASSPPQRPRRRAARPTVGSL-----TSLADPP-----------PPPPTPEPAPHALVSATPLPPGPAAARQAS 2732
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  744 LPPQRSDQHQPASAPPMMQAAAAAAGPPLVAATPYSSYIPYNPqqfpgqPAMMQPMAHYPSQPVFAPMLQSNPRMLTSGS 823
Cdd:PHA03247  2733 PALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAP------AAGPPRRLTRPAVASLSESRESLPSPWDPAD 2806
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  824 HPQAIVSSSTPQYPSAEQPTPQALYATVHQSYPHHATQlhghQPQPATTPTGS---------QPQSQHAAPSPVQHQAGQ 894
Cdd:PHA03247  2807 PPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPG----PPPPSLPLGGSvapggdvrrRPPSRSPAAKPAAPARPP 2882
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  895 APHLGSGQPQQNlyhPGALTGTPPSLPPGPSAQSPQSSFPQPAAVYAIHPHQQLPhgftnmahvtqahvqtgvTAAPPPH 974
Cdd:PHA03247  2883 VRRLARPAVSRS---TESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPP------------------PPPRPQP 2941
                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1958647570  975 PGAPHPPQVMLLHPPQGHGGPPQGAVPPSGVPALSASTPSPYPYIGHPQGEQP 1027
Cdd:PHA03247  2942 PLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTP 2994
PHA03247 PHA03247
large tegument protein UL36; Provisional
334-723 2.57e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.78  E-value: 2.57e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  334 PSLVSREGKYIPLPQRVRegPRGGVRCSSSRGGRPGLSSLPPrGPHHLDNSSPGPGSEARGINGGPSRMSPKAQRPLRG- 412
Cdd:PHA03247  2580 PAVTSRARRPDAPPQSAR--PRAPVDDRGDPRGPAPPSPLPP-DTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDp 2656
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  413 ----------------GKTLSSPNNRPSGEASVPPTSAVGRMY----PPRSPKSAAPAPVSA------------SCPEPP 460
Cdd:PHA03247  2657 apgrvsrprrarrlgrAAQASSPPQRPRRRAARPTVGSLTSLAdpppPPPTPEPAPHALVSAtplppgpaaarqASPALP 2736
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  461 IGSAVASSASIPVTSSVVDPGAGSISPASPKLSLAPTDvkelPTKEPSRSLEAQELARIAGKVPGLQNeqKRFQLEELRK 540
Cdd:PHA03247  2737 AAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAA----PAAGPPRRLTRPAVASLSESRESLPS--PWDPADPPAA 2810
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  541 FGAQFKLQPSSSSETGLDPFPSRILKEEAKGKEKEVDgllTSDPMGSPVSSKAESILDKEDKVPLAAVAGSEGPEQLQPP 620
Cdd:PHA03247  2811 VLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPP---PSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLA 2887
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  621 CPSQTGSPPVGLIKGDDKEEGPvteqvkkstlNPNAKEFNPTKPLLSVNKSTSTPTSPGPRTHSTPSIPVLTAGQS---- 696
Cdd:PHA03247  2888 RPAVSRSTESFALPPDQPERPP----------QPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGepsg 2957
                          410       420
                   ....*....|....*....|....*..
gi 1958647570  697 GLYSPQYISYIPQIHMGPAVQAPQMYP 723
Cdd:PHA03247  2958 AVPQPWLGALVPGRVAVPRFRVPQPAP 2984
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
864-939 1.18e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 46.31  E-value: 1.18e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958647570  864 GHQPQPATTPTGSQPQSQHAAPSPVQHQAGQAphlgSGQPQQNLYHPGALTGTPPSLPPGPSAQSPQSSFPQPAAV 939
Cdd:PRK14971   389 APQPSAAAAASPSPSQSSAAAQPSAPQSATQP----AGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPV 460
 
Name Accession Description Interval E-value
SM-ATX pfam14438
Ataxin 2 SM domain; This SM domain is found in Ataxin-2.
117-190 3.36e-19

Ataxin 2 SM domain; This SM domain is found in Ataxin-2.


Pssm-ID: 464173  Cd Length: 78  Bit Score: 82.99  E-value: 3.36e-19
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958647570  117 MLHFLTAVVGSTCDVKVKNGTTYEGIFKTLS--SKFELAVDAVHRKASE--PAGGPRREDIVDTMVFKPSDVLLVHFR 190
Cdd:pfam14438    1 LLFLLTSLVGLVVEVTTKNGEVYEGIFSTASleKDFGVVLKMARRIKKSngSGLNPVRGEIVDTMIFPAKDIVDIEAK 78
LsmAD pfam06741
LsmAD domain; This domain is found associated with Lsm domain.
258-320 1.58e-17

LsmAD domain; This domain is found associated with Lsm domain.


Pssm-ID: 461998 [Multi-domain]  Cd Length: 65  Bit Score: 77.61  E-value: 1.58e-17
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958647570  258 YGVKTTYDSSLssYTVPLEKdNSEEFRQRELRAAQLAREIESSPQYRLRIAMEN-----DDGRTEEEK 320
Cdd:pfam06741    1 FGVKSTYDENL--YTTKLDR-SSPDYKEREAEAERIAREIEGSASTNAHVAEERgldvdDSGLDEEDK 65
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
745-964 4.62e-11

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 66.98  E-value: 4.62e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  745 PPQRSDQHQPASAPPMMQAAAAAAGPPLVAATPYSSyiPYNPQQFPGQPAMMQPMA--------------HYPSQPVFAP 810
Cdd:pfam09770  107 PAARAAQSSAQPPASSLPQYQYASQQSQQPSKPVRT--GYEKYKEPEPIPDLQVDAslwgvapkkaaapaPAPQPAAQPA 184
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  811 MLQSNPRMLTS--------------------GSHPQAIVSSSTPQYPSAEQPTPQALYATVHQSYPHHATQL--HGHQPQ 868
Cdd:pfam09770  185 SLPAPSRKMMSleeveaamraqakkpaqqpaPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHpgQGHPVT 264
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  869 PATTPTGSQPQSQHAAPSPVQHQAGQAPHLGSGQPQQNLYHPGALTGTPPSLPPGPSAQSPqssfPQPAavyaiHPHQQL 948
Cdd:pfam09770  265 ILQRPQSPQPDPAQPSIQPQAQQFHQQPPPVPVQPTQILQNPNRLSAARVGYPQNPQPGVQ----PAPA-----HQAHRQ 335
                          250
                   ....*....|....*.
gi 1958647570  949 PHGFTNMAHVTQAHVQ 964
Cdd:pfam09770  336 QGSFGRQAPIITHPQQ 351
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
785-1023 9.57e-07

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 53.12  E-value: 9.57e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  785 NPQQFPGQPAMMQPMAHYPSQPVFAPMLQSNPRMLTSG----SHPQAI----VSSS------TPQYPSAEQPTPQALYAT 850
Cdd:pfam09770  106 QPAARAAQSSAQPPASSLPQYQYASQQSQQPSKPVRTGyekyKEPEPIpdlqVDASlwgvapKKAAAPAPAPQPAAQPAS 185
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  851 VHQSYPHHAT------QLHGHQPQPATTPTGSQPQSQHAAPSPVQHQAGQAPHLGSGQPQQNLYHPGALTGTPPSLPPGP 924
Cdd:pfam09770  186 LPAPSRKMMSleeveaAMRAQAKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQGHPVTI 265
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  925 SaQSPQSSFPQPAAVYA-IHPHQQLPHGFTNMAHVTQAHVQTGVtaappphpgaphppQVMLLHPPQGHGGPPQGAVPPS 1003
Cdd:pfam09770  266 L-QRPQSPQPDPAQPSIqPQAQQFHQQPPPVPVQPTQILQNPNR--------------LSAARVGYPQNPQPGVQPAPAH 330
                          250       260
                   ....*....|....*....|
gi 1958647570 1004 GVPALSASTPSPYPYIGHPQ 1023
Cdd:pfam09770  331 QAHRQQGSFGRQAPIITHPQ 350
PHA03247 PHA03247
large tegument protein UL36; Provisional
584-1027 5.53e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.09  E-value: 5.53e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  584 PMGSPVSSKAESILDKEDKVPLAAVAGSEGPEQLQPPCPSQTGSPPVGLIKGDDKEEGPVTEQVKKSTLNPNAKEFNPTK 663
Cdd:PHA03247  2589 PDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRAR 2668
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  664 PLLSVNKSTSTPTSPGPRTHSTPSIPVltagqSGLYSPQyisyipqihmgPAVQAPQMYPYPVSNSVPGQQGKYRGAKGS 743
Cdd:PHA03247  2669 RLGRAAQASSPPQRPRRRAARPTVGSL-----TSLADPP-----------PPPPTPEPAPHALVSATPLPPGPAAARQAS 2732
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  744 LPPQRSDQHQPASAPPMMQAAAAAAGPPLVAATPYSSYIPYNPqqfpgqPAMMQPMAHYPSQPVFAPMLQSNPRMLTSGS 823
Cdd:PHA03247  2733 PALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAP------AAGPPRRLTRPAVASLSESRESLPSPWDPAD 2806
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  824 HPQAIVSSSTPQYPSAEQPTPQALYATVHQSYPHHATQlhghQPQPATTPTGS---------QPQSQHAAPSPVQHQAGQ 894
Cdd:PHA03247  2807 PPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPG----PPPPSLPLGGSvapggdvrrRPPSRSPAAKPAAPARPP 2882
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  895 APHLGSGQPQQNlyhPGALTGTPPSLPPGPSAQSPQSSFPQPAAVYAIHPHQQLPhgftnmahvtqahvqtgvTAAPPPH 974
Cdd:PHA03247  2883 VRRLARPAVSRS---TESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPP------------------PPPRPQP 2941
                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1958647570  975 PGAPHPPQVMLLHPPQGHGGPPQGAVPPSGVPALSASTPSPYPYIGHPQGEQP 1027
Cdd:PHA03247  2942 PLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTP 2994
PHA03247 PHA03247
large tegument protein UL36; Provisional
392-938 6.39e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.71  E-value: 6.39e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  392 ARGINGGPSRMSPKAQRPLRGGKTLSSPNNR--PSGEASVPPTSAVGRMYPPRSPKSAAPAPvsASCPEPPIGSAVASS- 468
Cdd:PHA03247  2456 ARTILGAPFSLSLLLGELFPGAPVYRRPAEArfPFAAGAAPDPGGGGPPDPDAPPAPSRLAP--AILPDEPVGEPVHPRm 2533
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  469 -ASIPVTSSVVDPGAGSISPASPKLSLAPTDVKELPTKEPS-RSLEAQELARIAGKVPGLQNEQKRFQLEELRKFGAQFK 546
Cdd:PHA03247  2534 lTWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPApRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAP 2613
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  547 LQPSSSSETGLDP-FPSRILKEEAKGKEKEVDGLLTSDPMGSPVSSKAEsiLDKEDKVPLAAVAGSEGPEQLQPPCPSQT 625
Cdd:PHA03247  2614 PSPLPPDTHAPDPpPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVS--RPRRARRLGRAAQASSPPQRPRRRAARPT 2691
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  626 GSPPVGLIKGDDKEEGPVTEQVKKSTLNPNakefnPTKPLLSVNKSTSTPTSPGPRthSTPSIPVLTAGQSGLYSPQYIS 705
Cdd:PHA03247  2692 VGSLTSLADPPPPPPTPEPAPHALVSATPL-----PPGPAAARQASPALPAAPAPP--AVPAGPATPGGPARPARPPTTA 2764
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  706 yipqihmGPAVQAPqmypyPVSNSVPGQQGKYRGAKGSLPPQRSDQHQPASAPPMMQAAAAAAGPPLVAATPYSSYIPyn 785
Cdd:PHA03247  2765 -------GPPAPAP-----PAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPP-- 2830
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  786 pqqfpgqPAMMQPMAHYPSQPVFAPmlqsnprmltsgshPQAIVSSSTPQYPSAEQPTPQALYATVHQSYPHHATQLHGH 865
Cdd:PHA03247  2831 -------PTSAQPTAPPPPPGPPPP--------------SLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARP 2889
                          490       500       510       520       530       540       550
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958647570  866 QPQPattPTGSQPQSQHAAPSPVQHQAGQAPHLGSGQPQQNLYHPGALTGTPPSLPPGPSAQSPQSSFPQPAA 938
Cdd:PHA03247  2890 AVSR---STESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAV 2959
PHA03247 PHA03247
large tegument protein UL36; Provisional
334-723 2.57e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.78  E-value: 2.57e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  334 PSLVSREGKYIPLPQRVRegPRGGVRCSSSRGGRPGLSSLPPrGPHHLDNSSPGPGSEARGINGGPSRMSPKAQRPLRG- 412
Cdd:PHA03247  2580 PAVTSRARRPDAPPQSAR--PRAPVDDRGDPRGPAPPSPLPP-DTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDp 2656
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  413 ----------------GKTLSSPNNRPSGEASVPPTSAVGRMY----PPRSPKSAAPAPVSA------------SCPEPP 460
Cdd:PHA03247  2657 apgrvsrprrarrlgrAAQASSPPQRPRRRAARPTVGSLTSLAdpppPPPTPEPAPHALVSAtplppgpaaarqASPALP 2736
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  461 IGSAVASSASIPVTSSVVDPGAGSISPASPKLSLAPTDvkelPTKEPSRSLEAQELARIAGKVPGLQNeqKRFQLEELRK 540
Cdd:PHA03247  2737 AAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAA----PAAGPPRRLTRPAVASLSESRESLPS--PWDPADPPAA 2810
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  541 FGAQFKLQPSSSSETGLDPFPSRILKEEAKGKEKEVDgllTSDPMGSPVSSKAESILDKEDKVPLAAVAGSEGPEQLQPP 620
Cdd:PHA03247  2811 VLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPP---PSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLA 2887
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  621 CPSQTGSPPVGLIKGDDKEEGPvteqvkkstlNPNAKEFNPTKPLLSVNKSTSTPTSPGPRTHSTPSIPVLTAGQS---- 696
Cdd:PHA03247  2888 RPAVSRSTESFALPPDQPERPP----------QPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGepsg 2957
                          410       420
                   ....*....|....*....|....*..
gi 1958647570  697 GLYSPQYISYIPQIHMGPAVQAPQMYP 723
Cdd:PHA03247  2958 AVPQPWLGALVPGRVAVPRFRVPQPAP 2984
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
864-939 1.18e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 46.31  E-value: 1.18e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958647570  864 GHQPQPATTPTGSQPQSQHAAPSPVQHQAGQAphlgSGQPQQNLYHPGALTGTPPSLPPGPSAQSPQSSFPQPAAV 939
Cdd:PRK14971   389 APQPSAAAAASPSPSQSSAAAQPSAPQSATQP----AGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPV 460
PRK10927 PRK10927
cell division protein FtsN;
797-938 2.00e-04

cell division protein FtsN;


Pssm-ID: 236797 [Multi-domain]  Cd Length: 319  Bit Score: 44.67  E-value: 2.00e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  797 QPMAHYPSQPVFAPMLQsNPRMLTSG-----SHPQAIVSSSTPQY---PSAEQpTPQALYATVH-QSYPHHATQLHGHQP 867
Cdd:PRK10927    93 QPGVRAPTEPSAGGEVK-TPEQLTPEqrqllEQMQADMRQQPTQLvevPWNEQ-TPEQRQQTLQrQRQAQQLAEQQRLAQ 170
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958647570  868 QPATTPTGSQPQSQHAAPSPVQHQAGQAPHLGSGQPQQNLYHPGALTGTPPSLP-PGPSAQSPQSsfPQPAA 938
Cdd:PRK10927   171 QSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQQPYQDLLQTPAHTTAQSKPQqAAPVTRAADA--PKPTA 240
PRK10263 PRK10263
DNA translocase FtsK; Provisional
787-944 2.57e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 45.46  E-value: 2.57e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  787 QQFPG-QPAMMQPMAHypSQPVFAPMlqsnPRMLTSGSHPQAIVSSSTPQYPSAEQPTPQALYATVHQSYPHHATQLHGH 865
Cdd:PRK10263   709 QRYSGeQPAGANPFSL--DDFEFSPM----KALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQ 782
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958647570  866 QPQPATTPTGSQPQSQHAAPSPVQHQAGQAPHLGSGQPQQnlyhpgaltgtpPSLPPGPSAQSPQSSFPQPAAVYaIHP 944
Cdd:PRK10263   783 QPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQ------------PVAPQPQYQQPQQPVAPQPQDTL-LHP 848
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
368-689 3.87e-04

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 44.68  E-value: 3.87e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  368 PGLSSLPPRGPHHLDNSS----PGPGSEARGINGGPSRMSP----KAQRPLRGGKTLSSP--NNRPSGeasvPPTSAVGR 437
Cdd:PTZ00449   514 PEASGLPPKAPGDKEGEEgeheDSKESDEPKEGGKPGETKEgevgKKPGPAKEHKPSKIPtlSKKPEF----PKDPKHPK 589
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  438 myPPRSPKSAApAPVSASCPEPPIGSAVASSASIPVTSSVVDPGAGSISPASPKLSLA---PTDVKELPTKEPSRSleaq 514
Cdd:PTZ00449   590 --DPEEPKKPK-RPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSperPEGPKIIKSPKPPKS---- 662
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  515 elariaGKVPglqneqkrFQLEELRKFGAQFKLQPSSSSETGLDPFPSRILKEEAKGKEKEVDGLLTSDPMG-SPVSSKA 593
Cdd:PTZ00449   663 ------PKPP--------FDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPlPPKLPRD 728
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  594 ESILDKEDKVPlaavaGSEGPEQLQPPCPSQTGSPPVGLIKGDDKEEGPVTEQVKKSTLNPNAKEfnPTKPLLSVNKSTS 673
Cdd:PTZ00449   729 EEFPFEPIGDP-----DAEQPDDIEFFTPPEEERTFFHETPADTPLPDILAEEFKEEDIHAETGE--PDEAMKRPDSPSE 801
                          330
                   ....*....|....*..
gi 1958647570  674 -TPTSPGprTHstPSIP 689
Cdd:PTZ00449   802 hEDKPPG--DH--PSLP 814
Herpes_TAF50 pfam03326
Herpesvirus transcription activation factor (transactivator); This family includes EBV BRLF1 ...
651-910 6.75e-04

Herpesvirus transcription activation factor (transactivator); This family includes EBV BRLF1 and similar ORF 50 proteins from other herpesviruses.


Pssm-ID: 308764 [Multi-domain]  Cd Length: 568  Bit Score: 43.53  E-value: 6.75e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  651 TLNPNAKEFNPTKPLLSVNKSTSTPTSPGPRTHSTPSIPVLTAGQSGLYSPQYISYipQIHMGPAVQAPQMYPYPvsnsv 730
Cdd:pfam03326  310 TLVPIAGSTGVTEVVSYGHNSTSPSSTPCPSTAVTEADHQTEPEVPWIATAHQESD--QRPIGPGPEKPTFLPPV----- 382
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  731 pgqqGKYRGAKGsLPPQRSDQHQPAsappmmqAAAAAAGPPLVAATPYSSYIPYNPQQFPGQPammqpmahypsqpvfap 810
Cdd:pfam03326  383 ----GGKQFFQG-LRDSRSTSFLTA-------PEATSAISDVFQGTEVCQPKRIRALHPPGSP----------------- 433
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  811 mlqSNPRMLTSGSHPQAIVSSSTPQYPSAEQPTPQALYAT--VHQSYPHHATQLHGHQPQPATTPTGSQPQSQHAAPSPV 888
Cdd:pfam03326  434 ---SANRPLPSSLAPTPTGPVHEPGSSLTPATVPQPLDAApvATPEASHELQPPDEETPQPLDEDQALCGQQDASHPPPR 510
                          250       260
                   ....*....|....*....|..
gi 1958647570  889 QHQAGQAPHLGSGQPQQNLYHP 910
Cdd:pfam03326  511 GQLDELTTTLESMTEDLNLDSP 532
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
409-555 6.84e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 43.61  E-value: 6.84e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  409 PLRGGKTLSSPNNRPSGEASVPPTSAVGRMYPPRS---PKSAAPAPVSASCPEPPIGSaVASSASIPVTSSVVDPGAGSI 485
Cdd:PRK14971   371 GGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSsaaAQPSAPQSATQPAGTPPTVS-VDPPAAVPVNPPSTAPQAVRP 449
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958647570  486 SPASP--KLSLAPTDVKELPTKEPSRSLEAQELARIAGKVPGLQNEQkrFQLEEL----RKFGAQFKLQPSSSSET 555
Cdd:PRK14971   450 AQFKEekKIPVSKVSSLGPSTLRPIQEKAEQATGNIKEAPTGTQKEI--FTEEDLqyywQEFAGTRPQEEKALKET 523
PHA03247 PHA03247
large tegument protein UL36; Provisional
614-1087 1.15e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.39  E-value: 1.15e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  614 PEQLQPPCPSQTGSPPvgliKGDDKEEGP-VTEQVKKSTLNPNakefnPTKPLLSVNKSTSTPTSPGPrTHSTPSIPVLT 692
Cdd:PHA03247  2556 PPAAPPAAPDRSVPPP----RPAPRPSEPaVTSRARRPDAPPQ-----SARPRAPVDDRGDPRGPAPP-SPLPPDTHAPD 2625
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  693 AGQSGLYSPQYISYIPQIHMGPAVQAPQMYPYPVSNSVPGQ-QGKYRGAKGSLPPQRSdqhQPASAPPMMQAAAAAAGPP 771
Cdd:PHA03247  2626 PPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRaRRLGRAAQASSPPQRP---RRRAARPTVGSLTSLADPP 2702
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  772 LVAATPYssyiPYNPQQFPGQPAMMQPMAHYPSQPVfAPMLQSNPRMLTSGSHPQAIVSSSTPQYPSA-EQPTPQALYAT 850
Cdd:PHA03247  2703 PPPPTPE----PAPHALVSATPLPPGPAAARQASPA-LPAAPAPPAVPAGPATPGGPARPARPPTTAGpPAPAPPAAPAA 2777
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  851 VhqsyPHHATQLHGHQPQPATTPTGSQPQSQHAAPSPVQHQAGQAPhlGSGQPQQNLYHPGALTGTPPSLPPGPsaqsPQ 930
Cdd:PHA03247  2778 G----PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALP--PAASPAGPLPPPTSAQPTAPPPPPGP----PP 2847
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  931 SSFPQPAAVYAIHP-HQQLPHGFTNMAHVTQAHVQTGVTAAPPPHPGAPHPPQvmllhPPQGHGGPPQGAVPPSGVPals 1009
Cdd:PHA03247  2848 PSLPLGGSVAPGGDvRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFAL-----PPDQPERPPQPQAPPPPQP--- 2919
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570 1010 aSTPSPYPYIGHPQGEQPG--QAPGFPGGADDRILCRVGRSHSRRRQGLAPGSVLCfpPSSLSCDPAAPLPTASPALSDP 1087
Cdd:PHA03247  2920 -QPQPPPPPQPQPPPPPPPrpQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAV--PRFRVPQPAPSREAPASSTPPL 2996
PHA03247 PHA03247
large tegument protein UL36; Provisional
867-1087 1.97e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.62  E-value: 1.97e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  867 PQPATTPTGSQPQSQHAAPSPvqhqAGQAPHLGSGQPQQNLYHPGALT--------------GTPPSLPPGPSAQSPQSS 932
Cdd:PHA03247  2492 AGAAPDPGGGGPPDPDAPPAP----SRLAPAILPDEPVGEPVHPRMLTwirgleelasddagDPPPPLPPAAPPAAPDRS 2567
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  933 FPQPAavYAIHPHQQlphGFTNMAHVTQAHVQTGVTAAPPPhpgaphppqvmllhPPQGHGGPPQGAVPPSGVPALSAST 1012
Cdd:PHA03247  2568 VPPPR--PAPRPSEP---AVTSRARRPDAPPQSARPRAPVD--------------DRGDPRGPAPPSPLPPDTHAPDPPP 2628
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958647570 1013 PSPYPYIGHPQGEQPGQAPGFPGGADDRILCRVGRSHSRRRQGLAPGSVlcfPPSSLSCDPAAPLPTAS-PALSDP 1087
Cdd:PHA03247  2629 PSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQAS---SPPQRPRRRAARPTVGSlTSLADP 2701
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
383-517 3.79e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.40  E-value: 3.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  383 NSSPGPGSEARGINGGPSRMSPKAQRPLRGGKTLSSPNNRPSGEASVPPTSAVGRMYPPRSPKSAA-------PAPVSAS 455
Cdd:PRK12323   371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAArqasargPGGAPAP 450
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958647570  456 CPEPPIGSAVASSASIPVTSSVVDPGAGSISPASPKLSLAPTDV-----KELPTKEPSRSLEAQELA 517
Cdd:PRK12323   451 APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDdpppwEELPPEFASPAPAQPDAA 517
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
661-948 5.13e-03

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 40.91  E-value: 5.13e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  661 PTKPLLSVNKSTSTPTSPGPRTHSTPSIPVLTAGQSGLYSPQYIsyiPQIHmGPAVQAPQMYPYPVSNSVPGQQGKYRGA 740
Cdd:pfam03154  199 PTPSAPSVPPQGSPATSQPPNQTQSTAAPHTLIQQTPTLHPQRL---PSPH-PPLQPMTQPPPPSQVSPQPLPQPSLHGQ 274
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  741 KGSLPP--QRSDQHQPASAPPMMQAAAAAAGPPLVAATPySSYIPYNPQQFPGQPAMM------QPMAHYPSQPVFAPML 812
Cdd:pfam03154  275 MPPMPHslQTGPSHMQHPVPPQPFPLTPQSSQSQVPPGP-SPAAPGQSQQRIHTPPSQsqlqsqQPPREQPLPPAPLSMP 353
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  813 QSNPRMLT---------SGSHPQAIVSSSTPQYPSAEQPTPQ----ALYATVHQSYPHHATQLHGHQPQPATTPTGSQP- 878
Cdd:pfam03154  354 HIKPPPTTpipqlpnpqSHKHPPHLSGPSPFQMNSNLPPPPAlkplSSLSTHHPPSAHPPPLQLMPQSQQLPPPPAQPPv 433
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  879 --QSQHAAPSPVQHQAGQAPHLGSGQ---PQQNLYHPGALTGTPPSLPPG-----------PSAQSPQSSFPQPAAVYAI 942
Cdd:pfam03154  434 ltQSQSLPPPAASHPPTSGLHQVPSQspfPQHPFVPGGPPPITPPSGPPTstssampgiqpPSSASVSSSGPVPAAVSCP 513

                   ....*.
gi 1958647570  943 HPHQQL 948
Cdd:pfam03154  514 LPPVQI 519
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
322-510 5.38e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 40.92  E-value: 5.38e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  322 SAVQRQGSGRESPSLVSREGKYIPLPQRVREGPRGGVRCSSSRGGRPGLSSLPPRGPHHLDNSSPGPGSEARGINGGPsr 401
Cdd:PHA03307   181 ETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLP-- 258
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  402 mSPKAQRPLRGGKTLSSPNNRPSGEASVPPTSAVGRMYPPRSPKSA-------APAPVSASCPEPPIGSAVASSASIPVT 474
Cdd:PHA03307   259 -RPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPgsgpapsSPRASSSSSSSRESSSSSTSSSSESSR 337
                          170       180       190
                   ....*....|....*....|....*....|....*.
gi 1958647570  475 SSVVDPGAGSISPASPKLSLAPTDVKELPTKEPSRS 510
Cdd:PHA03307   338 GAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSR 373
Med15 pfam09606
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of ...
783-1035 5.40e-03

ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development.


Pssm-ID: 312941 [Multi-domain]  Cd Length: 732  Bit Score: 40.76  E-value: 5.40e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  783 PYNPQQFPGQPAMMQPMAHYPSQPVFAPMLQSNPRMLTSGSHPqaIVSSSTPQYPSAEQPTPQALYATVHQSYPHHATQl 862
Cdd:pfam09606  168 SGTPNQMGPNGGPGQGQAGGMNGGQQGPMGGQMPPQMGVPGMP--GPADAGAQMGQQAQANGGMNPQQMGGAPNQVAMQ- 244
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  863 hghqpQPATTPTGSQPQSQHAAPSPVQHQAGQAPHLGSGQPQQNLYHPGAltgTPPSLPPGPSAQSPQSSFPQPAavyai 942
Cdd:pfam09606  245 -----QQQPQQQGQQSQLGMGINQMQQMPQGVGGGAGQGGPGQPMGPPGQ---QPGAMPNVMSIGDQNNYQQQQT----- 311
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  943 HPHQQLPHGFTNMAHVTQAHVQTGvtaapPPHPGAPHPPQVMLLHPPQGHGGpPQGAVPPSGVPALSASTPSPYPY---- 1018
Cdd:pfam09606  312 RQQQQQQGGNHPAAHQQQMNQSVG-----QGGQVVALGGLNHLETWNPGNFG-GLGANPMQRGQPGMMSSPSPVPGqqvr 385
                          250
                   ....*....|....*...
gi 1958647570 1019 -IGHPQGEQPGQAPGFPG 1035
Cdd:pfam09606  386 qVTPNQFMRQSPQPSVPS 403
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
727-1034 5.54e-03

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 40.91  E-value: 5.54e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  727 SNSVPGQQGKYRGAKGSLPPQRSDQHQPASAPPMMQAAAAAAGPPLVAATPYSSYIPYNPQQFP-GQPAMMQPMAHYPSQ 805
Cdd:pfam03154  145 SPSIPSPQDNESDSDSSAQQQILQTQPPVLQAQSGAASPPSPPPPGTTQAATAGPTPSAPSVPPqGSPATSQPPNQTQST 224
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  806 PVFAPMLQSNPRMltsgsHPQAIVSSSTPQYPSAEQPTPQALYATVHQSYPHHatqlhghqpqpatTPTGSQPQSQHAAP 885
Cdd:pfam03154  225 AAPHTLIQQTPTL-----HPQRLPSPHPPLQPMTQPPPPSQVSPQPLPQPSLH-------------GQMPPMPHSLQTGP 286
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  886 SPVQHQAGQAPHLGSGQPQQNLYHPGALTG----------TPPSLPPGPSAQSPQSSFPQPAAVYAIH----PHQQLPHG 951
Cdd:pfam03154  287 SHMQHPVPPQPFPLTPQSSQSQVPPGPSPAapgqsqqrihTPPSQSQLQSQQPPREQPLPPAPLSMPHikppPTTPIPQL 366
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  952 FTNMAHVTQAHVQT----GVTAAPPPHPGAPHPPQVMLLHPPQGHGGP----PQG---AVPPSGVPALSASTPSPYPYIG 1020
Cdd:pfam03154  367 PNPQSHKHPPHLSGpspfQMNSNLPPPPALKPLSSLSTHHPPSAHPPPlqlmPQSqqlPPPPAQPPVLTQSQSLPPPAAS 446
                          330
                   ....*....|....
gi 1958647570 1021 HPQGEQPGQAPGFP 1034
Cdd:pfam03154  447 HPPTSGLHQVPSQS 460
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
714-1031 6.96e-03

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 40.52  E-value: 6.96e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  714 PAVQAPQMYPYPVSNSVPGQQGKYRGAKGSLPPQRSDQHQPASAPPMMQAAAAAAGPPLVAATPyssyiPYNPQQFPGQP 793
Cdd:pfam03154  172 PVLQAQSGAASPPSPPPPGTTQAATAGPTPSAPSVPPQGSPATSQPPNQTQSTAAPHTLIQQTP-----TLHPQRLPSPH 246
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  794 AMMQPMAHYPSQPVFAPMLQSNPRMLTSGSHPQAIVSSSTP--QYPSAEQPTPQALYATVHQSYPHHATQLHGHQPQPAT 871
Cdd:pfam03154  247 PPLQPMTQPPPPSQVSPQPLPQPSLHGQMPPMPHSLQTGPShmQHPVPPQPFPLTPQSSQSQVPPGPSPAAPGQSQQRIH 326
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  872 TPTgSQPQSQHAAP---SPVQHQAGQAPHLG----SGQPQ----QNLYHPGALTGTPP-----SLPPgPSAQSPQSSFPQ 935
Cdd:pfam03154  327 TPP-SQSQLQSQQPpreQPLPPAPLSMPHIKppptTPIPQlpnpQSHKHPPHLSGPSPfqmnsNLPP-PPALKPLSSLST 404
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  936 PAAVYAIHPHQQL-PHGFTNMAHVTQAHVQTgvTAAPPPHPGAPHPPQVMLLHPPQGHGGPPQGAVPPSGVPALSASTPS 1014
Cdd:pfam03154  405 HHPPSAHPPPLQLmPQSQQLPPPPAQPPVLT--QSQSLPPPAASHPPTSGLHQVPSQSPFPQHPFVPGGPPPITPPSGPP 482
                          330
                   ....*....|....*..
gi 1958647570 1015 PYPYIGHPQGEQPGQAP 1031
Cdd:pfam03154  483 TSTSSAMPGIQPPSSAS 499
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
866-1040 8.89e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.97  E-value: 8.89e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  866 QPQPATTPTGSQPQSQHAAPSPVQHqAGQAPHLGSGQPQQNLYHPGALTGTPPSLPPGPSAQSPQSSFPQPAAVYAIHPH 945
Cdd:PRK07764   626 APAPAGAAAAPAEASAAPAPGVAAP-EHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPA 704
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  946 QQLPHGFTNMAHVTQAHVQTGVTAAPPPHPGAPHPPQVMLLHPPQGHGGPPQGAVPPSGVPALSASTPSPYPYIGHPQGE 1025
Cdd:PRK07764   705 PAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEE 784
                          170
                   ....*....|....*
gi 1958647570 1026 QPGQAPGFPGGADDR 1040
Cdd:PRK07764   785 MAEDDAPSMDDEDRR 799
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
864-1088 9.84e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.97  E-value: 9.84e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  864 GHQPQPATTPTGSQPQSQHAAPSPVQHQAGQAPHLGSGQPqqnlyhpgaltgTPPSLPPGPSAQSPQSSFPQPAAVYAIH 943
Cdd:PRK07764   594 AAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAA------------AAPAEASAAPAPGVAAPEHHPKHVAVPD 661
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958647570  944 PHQQLPHGFTNMAHVTQAHVQTGVTAAPPPHPGAPHPPQVMLLHPPQGHGGPPQGAVPPSGVPALSASTPSPYPYIGHPQ 1023
Cdd:PRK07764   662 ASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPL 741
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958647570 1024 GEQPGQAPGFPGGADDrilcrvgrSHSRRRQGLAPGSVLCFPPSSLScDPAAPLPTASPALSDPD 1088
Cdd:PRK07764   742 PPEPDDPPDPAGAPAQ--------PPPPPAPAPAAAPAAAPPPSPPS-EEEEMAEDDAPSMDDED 797
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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