transcription factor RFX3 isoform X4 [Rattus norvegicus]
RFX family transcription factor( domain architecture ID 11759140)
RFX family transcription factor activates transcription by binding to the X-box in the promoter of target genes; similar to human transcription factor RFX3
List of domain hits
Name | Accession | Description | Interval | E-value | |||
RFX_DNA_binding | pfam02257 | RFX DNA-binding domain; RFX is a regulatory factor which binds to the X box of MHC class II ... |
187-264 | 1.03e-44 | |||
RFX DNA-binding domain; RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD). : Pssm-ID: 460512 Cd Length: 79 Bit Score: 154.63 E-value: 1.03e-44
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RFX1_trans_act super family | cl25722 | RFX1 transcription activation region; The RFX family is a family of winged-helix DNA binding ... |
82-169 | 1.08e-27 | |||
RFX1 transcription activation region; The RFX family is a family of winged-helix DNA binding proteins. RFX1 is a regulatory factor essential for expression of MHC class II genes. This region is to found N terminal to the RFX DNA binding region (pfam02257) in some mammalian RFX proteins, and is thought to activate transcription when associated with DNA. Deletion analysis has identified the region 233-351 in human RFX1 as being required for maximal activation. The actual alignment was detected with superfamily member pfam04589: Pssm-ID: 461362 [Multi-domain] Cd Length: 163 Bit Score: 109.63 E-value: 1.08e-27
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Name | Accession | Description | Interval | E-value | |||
RFX_DNA_binding | pfam02257 | RFX DNA-binding domain; RFX is a regulatory factor which binds to the X box of MHC class II ... |
187-264 | 1.03e-44 | |||
RFX DNA-binding domain; RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD). Pssm-ID: 460512 Cd Length: 79 Bit Score: 154.63 E-value: 1.03e-44
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RFX1_trans_act | pfam04589 | RFX1 transcription activation region; The RFX family is a family of winged-helix DNA binding ... |
82-169 | 1.08e-27 | |||
RFX1 transcription activation region; The RFX family is a family of winged-helix DNA binding proteins. RFX1 is a regulatory factor essential for expression of MHC class II genes. This region is to found N terminal to the RFX DNA binding region (pfam02257) in some mammalian RFX proteins, and is thought to activate transcription when associated with DNA. Deletion analysis has identified the region 233-351 in human RFX1 as being required for maximal activation. Pssm-ID: 461362 [Multi-domain] Cd Length: 163 Bit Score: 109.63 E-value: 1.08e-27
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COG3378 | COG3378 | DNA primase, phage- or plasmid-associated [Mobilome: prophages, transposons]; |
191-266 | 1.23e-08 | |||
DNA primase, phage- or plasmid-associated [Mobilome: prophages, transposons]; Pssm-ID: 442605 [Multi-domain] Cd Length: 403 Bit Score: 57.64 E-value: 1.23e-08
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Name | Accession | Description | Interval | E-value | |||
RFX_DNA_binding | pfam02257 | RFX DNA-binding domain; RFX is a regulatory factor which binds to the X box of MHC class II ... |
187-264 | 1.03e-44 | |||
RFX DNA-binding domain; RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD). Pssm-ID: 460512 Cd Length: 79 Bit Score: 154.63 E-value: 1.03e-44
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RFX1_trans_act | pfam04589 | RFX1 transcription activation region; The RFX family is a family of winged-helix DNA binding ... |
82-169 | 1.08e-27 | |||
RFX1 transcription activation region; The RFX family is a family of winged-helix DNA binding proteins. RFX1 is a regulatory factor essential for expression of MHC class II genes. This region is to found N terminal to the RFX DNA binding region (pfam02257) in some mammalian RFX proteins, and is thought to activate transcription when associated with DNA. Deletion analysis has identified the region 233-351 in human RFX1 as being required for maximal activation. Pssm-ID: 461362 [Multi-domain] Cd Length: 163 Bit Score: 109.63 E-value: 1.08e-27
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COG3378 | COG3378 | DNA primase, phage- or plasmid-associated [Mobilome: prophages, transposons]; |
191-266 | 1.23e-08 | |||
DNA primase, phage- or plasmid-associated [Mobilome: prophages, transposons]; Pssm-ID: 442605 [Multi-domain] Cd Length: 403 Bit Score: 57.64 E-value: 1.23e-08
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Blast search parameters | ||||
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