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Conserved domains on  [gi|1958671864|ref|XP_038946446|]
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peroxisomal biogenesis factor 19 isoform X1 [Rattus norvegicus]

Protein Classification

peroxisomal biogenesis factor 19( domain architecture ID 10519178)

peroxisomal biogenesis factor 19 (Pex19) is necessary for early peroxisomal biogenesis, acting both as a cytosolic chaperone and as an import receptor for peroxisomal membrane proteins

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Pex19 pfam04614
Pex19 protein family;
91-290 2.92e-67

Pex19 protein family;


:

Pssm-ID: 461367  Cd Length: 245  Bit Score: 210.64  E-value: 2.92e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958671864  91 LFDSELASQATAEFEKAMKEL----------AEEEPHLVEQFQKLSEAAGRVGSDASSQQ---------EFTSCLKETLS 151
Cdd:pfam04614   1 LEDEEFAKQLQKEMENLMKELgpdagenaeaAEDFDELLKQFEEAAEAAAAAGSAEASASaagsaagpeSFQDIISETLD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958671864 152 GLAKNATDLQNA-----GMSEEELTKAMEGLGMDEGDGEG---NILPIMQSLMQNLLSKDVLYPSLKEITEKYPEWLQSH 223
Cdd:pfam04614  81 RLKESGDKADAAiesasGNSDDLLAQLLKQLGLGGGGGDGggeDMSKMLLGMMEQLSSKEVLYEPMKELNDKFPEWLEEN 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958671864 224 QESIPPEQFEKYQQQHSVMGKICEQFEAETPTDSEATHRarfEAVLDLMQQLQDLGHPPKELAGEMP 290
Cdd:pfam04614 161 KEKLSAEDKERYEKQYEIVGEIVAIFEKEDYSDEDPEDR---EEITDLMQELQDLGSPPKELVGDMP 224
 
Name Accession Description Interval E-value
Pex19 pfam04614
Pex19 protein family;
91-290 2.92e-67

Pex19 protein family;


Pssm-ID: 461367  Cd Length: 245  Bit Score: 210.64  E-value: 2.92e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958671864  91 LFDSELASQATAEFEKAMKEL----------AEEEPHLVEQFQKLSEAAGRVGSDASSQQ---------EFTSCLKETLS 151
Cdd:pfam04614   1 LEDEEFAKQLQKEMENLMKELgpdagenaeaAEDFDELLKQFEEAAEAAAAAGSAEASASaagsaagpeSFQDIISETLD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958671864 152 GLAKNATDLQNA-----GMSEEELTKAMEGLGMDEGDGEG---NILPIMQSLMQNLLSKDVLYPSLKEITEKYPEWLQSH 223
Cdd:pfam04614  81 RLKESGDKADAAiesasGNSDDLLAQLLKQLGLGGGGGDGggeDMSKMLLGMMEQLSSKEVLYEPMKELNDKFPEWLEEN 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958671864 224 QESIPPEQFEKYQQQHSVMGKICEQFEAETPTDSEATHRarfEAVLDLMQQLQDLGHPPKELAGEMP 290
Cdd:pfam04614 161 KEKLSAEDKERYEKQYEIVGEIVAIFEKEDYSDEDPEDR---EEITDLMQELQDLGSPPKELVGDMP 224
 
Name Accession Description Interval E-value
Pex19 pfam04614
Pex19 protein family;
91-290 2.92e-67

Pex19 protein family;


Pssm-ID: 461367  Cd Length: 245  Bit Score: 210.64  E-value: 2.92e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958671864  91 LFDSELASQATAEFEKAMKEL----------AEEEPHLVEQFQKLSEAAGRVGSDASSQQ---------EFTSCLKETLS 151
Cdd:pfam04614   1 LEDEEFAKQLQKEMENLMKELgpdagenaeaAEDFDELLKQFEEAAEAAAAAGSAEASASaagsaagpeSFQDIISETLD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958671864 152 GLAKNATDLQNA-----GMSEEELTKAMEGLGMDEGDGEG---NILPIMQSLMQNLLSKDVLYPSLKEITEKYPEWLQSH 223
Cdd:pfam04614  81 RLKESGDKADAAiesasGNSDDLLAQLLKQLGLGGGGGDGggeDMSKMLLGMMEQLSSKEVLYEPMKELNDKFPEWLEEN 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958671864 224 QESIPPEQFEKYQQQHSVMGKICEQFEAETPTDSEATHRarfEAVLDLMQQLQDLGHPPKELAGEMP 290
Cdd:pfam04614 161 KEKLSAEDKERYEKQYEIVGEIVAIFEKEDYSDEDPEDR---EEITDLMQELQDLGSPPKELVGDMP 224
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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