|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
460-1220 |
3.27e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 90.89 E-value: 3.27e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 460 LVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQ---QDLQSKFVAKENEVQSLHS 536
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQkelYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 537 KLTDTLVSKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDK 616
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 617 QLKQTEDSLASEQDHLASKEQELKDvqnvnfllkaEVQKLQALAKEQAAAAHEVEKmqKSVHVKDDKIRLLEEQLQREVA 696
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLED----------RRERLQQEIEELLKKLEEAEL--KELQAELEELEEELEELQEELE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 697 SRVEELKILNDQNKALQLEVQKLQAVVSE-QPNKDVVEQMKKCIQEKDEKLRTVEELLETG---------LIQV------ 760
Cdd:TIGR02168 458 RLEEALEELREELEEAEQALDAAERELAQlQARLDSLERLQENLEGFSEGVKALLKNQSGLsgilgvlseLISVdegyea 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 761 ---ATREEELNAIRTENSSLTKEVQELKAKQMDQVAYVLvPFVSLIEDLKKVIHEKDGQIKSVEELLEVELLKVANK-EK 836
Cdd:TIGR02168 538 aieAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFL-PLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKlRK 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 837 TVQ--LSVTSQVQELQNLLR-GKEEQVDSMKAALE-DLTGREKCtqvcSTPRFEELENVLKEKDNEIKRIEAILKDTKSD 912
Cdd:TIGR02168 617 ALSylLGGVLVVDDLDNALElAKKLRPGYRIVTLDgDLVRPGGV----ITGGSAKTNSSILERRREIEELEEKIEELEEK 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 913 LSKKAELLKEVQDENKLFKSQVEQLNHQNHQQASFPSQEELQTVISEKEKE-ITDLCNELESLKNAVEHQRKKNNDLREK 991
Cdd:TIGR02168 693 IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEqLEERIAQLSKELTELEAEIEELEERLEE 772
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 992 NWEAMEALASTEKILQDRVNKTSKERQQQVEAVELESKDL--LKRLFpavsvpshSNYSEWLRSFEKKAKACMAGPSDT- 1068
Cdd:TIGR02168 773 AEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELtlLNEEA--------ANLRERLESLERRIAATERRLEDLe 844
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1069 EAVKVLEHRLKEANEMHTLLQLECEKYKSVLAEtegiLQKLQRSVEQEESKWKVKAEESRRTIQQMQSSFTASEQELERL 1148
Cdd:TIGR02168 845 EQIEELSEDIESLAAEIEELEELIEELESELEA----LLNERASLEEALALLRSELEELSEELRELESKRSELRRELEEL 920
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1149 RH------------ENKAMENLRREREHLEIELEKAEVERSTYVMEVRELKDLLTELQKKLD-------DSYSEAVRQNE 1209
Cdd:TIGR02168 921 REklaqlelrleglEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKelgpvnlAAIEEYEELKE 1000
|
810
....*....|.
gi 1958681418 1210 ELNLLKTQLNE 1220
Cdd:TIGR02168 1001 RYDFLTAQKED 1011
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
448-979 |
1.30e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.66 E-value: 1.30e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 448 AELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAK 527
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 528 ENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEEL 607
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 608 HKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQN----VNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDK 683
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEalaeLEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 684 IRLLEEQLQREVASRVEELKILNDQNKALQLEVQKLQAV--VSEQPNKDVVEQMKKCIQEKDEKLRTVEELLETGLIQVA 761
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVkaALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNI 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 762 TREEELNAIRTENSSLTK-----------EVQELKAKQMDQVAYVLVPFVSLIEDLKK---VIHEKDGQIKSVEELLEVE 827
Cdd:COG1196 552 VVEDDEVAAAAIEYLKAAkagratflpldKIRARAALAAALARGAIGAAVDLVASDLReadARYYVLGDTLLGRTLVAAR 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 828 LLKVANKEKTVQLSVTSQVQELQNLLRGKEEQVDSMKAALEDLTGREKctqvcstpRFEELENVLKEKDNEIKRIEAILK 907
Cdd:COG1196 632 LEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEA--------ELEELAERLAEEELELEEALLAEE 703
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958681418 908 DTKSDLSKKAELLKEVQDENKLFKSQVEQLNHQNHQQASFPSQEELQTVISEKEKE--ITDLCNELESLKNAVE 979
Cdd:COG1196 704 EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPpdLEELERELERLEREIE 777
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
688-1253 |
1.45e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.32 E-value: 1.45e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 688 EEQLQREVASRVEELKILNDQNKALQLEVQKLQAVVSEQPNK-DVVEQMKKCIQEKDEKLRTVEELLETGLIQVATR--- 763
Cdd:TIGR02168 255 LEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEiSRLEQQKQILRERLANLERQLEELEAQLEELESKlde 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 764 -EEELNAIRTENSSLTKEVQELKAKqMDQVAYVLVPFVSLIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQLSV 842
Cdd:TIGR02168 335 lAEELAELEEKLEELKEELESLEAE-LEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLE 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 843 TSQVQELQNLLRGKEEQVDSMKAALEDLTGREKCTQVCSTPRFEELENVLKEKDNEIKRIEAILKDTKSDLSK---KAEL 919
Cdd:TIGR02168 414 DRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQlqaRLDS 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 920 LKEVQDEN-KLFKSQVEQLNHQNHQQASFPSQEELQTVISEKEKEITD---------LCNELESLKNAVEHQrkKNNDLR 989
Cdd:TIGR02168 494 LERLQENLeGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAalggrlqavVVENLNAAKKAIAFL--KQNELG 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 990 EKNWEAMEALASTEKILQDRVNKTSKERQQQVeAVELESKD---------LLKRLFPAVSVPSHSNYSEWLRSFEK---- 1056
Cdd:TIGR02168 572 RVTFLPLDSIKGTEIQGNDREILKNIEGFLGV-AKDLVKFDpklrkalsyLLGGVLVVDDLDNALELAKKLRPGYRivtl 650
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1057 -----KAKACMAGPSDTEAVKVLEHR--LKEANEMHTLLQLECEKYKSVLAEtegiLQKLQRSVEQEESKWKVKAEESRR 1129
Cdd:TIGR02168 651 dgdlvRPGGVITGGSAKTNSSILERRreIEELEEKIEELEEKIAELEKALAE----LRKELEELEEELEQLRKELEELSR 726
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1130 TIQQMQSSFTASEQELERLRHEnkaMENLRREREHLEIELEKAEVERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNE 1209
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEER---IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE 803
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 1958681418 1210 ELNLLKTQLNETHSKLQNEQTERKKVADDLHKAQQSLNFIHSKI 1253
Cdd:TIGR02168 804 ALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQI 847
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
606-1194 |
2.98e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 64.70 E-value: 2.98e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 606 ELHKVIAEKDKQLKQTED---SLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDD 682
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENieeLIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEG 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 683 KIRLLEEQLqREVASRVEELKilndqnkalqLEVQKLQAVVSE----QPNKDVVEQMKKCIQEKDEKLRTVEELLE--TG 756
Cdd:PRK03918 253 SKRKLEEKI-RELEERIEELK----------KEIEELEEKVKElkelKEKAEEYIKLSEFYEEYLDELREIEKRLSrlEE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 757 LIQVATRE-EELNAIRTENSSLTKEVQELKAKQMdqvayVLVPFVSLIEDLKKVIHEKDGQIKSVEELLEVELLKVANKE 835
Cdd:PRK03918 322 EINGIEERiKELEEKEERLEELKKKLKELEKRLE-----ELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEEL 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 836 KTVQLSVTSQVQELQNLLRGKEEQVDSMKAALEDLTGREKCTQVCSTPRFEE-LENVLKEKDNEIKRIEAILKDTKSDLS 914
Cdd:PRK03918 397 EKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEhRKELLEEYTAELKRIEKELKEIEEKER 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 915 K----KAELLKEVQDENKLFK--SQVEQLNHQNHQQASFpSQEELQTVISEKEKeITDLCNELESLKNAVEHQRKKNNDL 988
Cdd:PRK03918 477 KlrkeLRELEKVLKKESELIKlkELAEQLKELEEKLKKY-NLEELEKKAEEYEK-LKEKLIKLKGEIKSLKKELEKLEEL 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 989 REKNWEAMEALASTEKILQDRVNKTSKERQQQVEAVELEskdlLKRLFPAvsvpshsnYSEWLRsfekkakacmagpsdt 1068
Cdd:PRK03918 555 KKKLAELEKKLDELEEELAELLKELEELGFESVEELEER----LKELEPF--------YNEYLE---------------- 606
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1069 eaVKVLEHRLKEANEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKVKAEESRRtiqqmqSSFTASEQELERL 1148
Cdd:PRK03918 607 --LKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELR------EEYLELSRELAGL 678
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 1958681418 1149 RHENKAMENLRREREHLEIELEKAEVERSTYVMEVRELKDLLTELQ 1194
Cdd:PRK03918 679 RAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVE 724
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
444-1019 |
2.82e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 61.57 E-value: 2.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 444 SKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTaEHEAAQQDLQSK 523
Cdd:TIGR04523 148 KKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNK-SLESQISELKKQ 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 524 FVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAA--QTSAS 601
Cdd:TIGR04523 227 NNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDlnNQKEQ 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 602 VLAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDvqnvnflLKAEVQKLQAlakeqaaaahEVEKMQKSVHVKD 681
Cdd:TIGR04523 307 DWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQ-------LKKELTNSES----------ENSEKQRELEEKQ 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 682 DKIrlleEQLQREVASRVEELKILNDQNKALQLEVQKlqavvSEQPNKDVVEQMKKCIQEKDEKLRTVEELLETGLIQva 761
Cdd:TIGR04523 370 NEI----EKLKKENQSYKQEIKNLESQINDLESKIQN-----QEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKN-- 438
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 762 trEEELNAIRTENSSLTKEVQELKakqmdqvayvlvpfvSLIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVqLS 841
Cdd:TIGR04523 439 --NSEIKDLTNQDSVKELIIKNLD---------------NTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKEL-KK 500
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 842 VTSQVQELQNLLRGKEEQVDSMKAaledltgrekctqvcstpRFEELENVLKEKDNEIKRIEAILKDTKSDLsKKAELLK 921
Cdd:TIGR04523 501 LNEEKKELEEKVKDLTKKISSLKE------------------KIEKLESEKKEKESKISDLEDELNKDDFEL-KKENLEK 561
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 922 EVQDENKlfksQVEQLNHQnhQQASFPSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLREKNweamEALAS 1001
Cdd:TIGR04523 562 EIDEKNK----EIEELKQT--QKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKEN----EKLSS 631
|
570
....*....|....*...
gi 1958681418 1002 TEKILQDRVNKTSKERQQ 1019
Cdd:TIGR04523 632 IIKNIKSKKNKLKQEVKQ 649
|
|
| Rib_recp_KP_reg |
pfam05104 |
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ... |
29-146 |
1.24e-08 |
|
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.
Pssm-ID: 461548 [Multi-domain] Cd Length: 140 Bit Score: 55.13 E-value: 1.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 29 MKETLYDDVLAKQKREQKLISTKADKKKAEKKKNKKK------EIQNGTLHESD----SEHVPQDFKLSDASPVEDEqfV 98
Cdd:pfam05104 1 MKETSYEEALAKQRRELKKTPTEKEKKKKEKKKEKKKkskkkeEKPNGKLPESEqadeSEEEPREFKTPDEAPSAAL--E 78
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1958681418 99 PAPLSVAETSSSVRERKKKEKKQKPSLEEHIIKESDASKIPGKKVEPV 146
Cdd:pfam05104 79 PEPVPTPVPAPVEPEPAPPSESPAPSPKEKKKKEKKSAKVEPAETPEA 126
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
328-1011 |
2.00e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 2.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 328 ELSGLLHQLQEKERLLTATKEDAAATKERCKQLTQEMMTEKERSSVV---MARMKERIGTLEKE---HNIFQNKMHVSYQ 401
Cdd:TIGR02168 226 ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELrleVSELEEEIEELQKElyaLANEISRLEQQKQ 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 402 ETQQMQMKFEQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQS---------AELNKLRQDCGRLVSELNEKTGKLQ 472
Cdd:TIGR02168 306 ILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEelesleaelEELEAELEELESRLEELEEQLETLR 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 473 QEGVQKKNAEQAAA----QLKVQLQEAERRWEEVQSYIRKRTAE-HEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQ 547
Cdd:TIGR02168 386 SKVAQLELQIASLNneieRLEARLERLEDRRERLQQEIEELLKKlEEAELKELQAELEELEEELEELQEELERLEEALEE 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 548 LEQRLMQLMESEQKRASQEEsmqiQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEK---DKQLKQT-ED 623
Cdd:TIGR02168 466 LREELEEAEQALDAAERELA----QLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELisvDEGYEAAiEA 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 624 SLASEQDHLASKEQElKDVQNVNFLLKAEVQKL------QALAKEQAAAAHEVEKMQKSVHVKDDKIRLLEEQLQREVAS 697
Cdd:TIGR02168 542 ALGGRLQAVVVENLN-AAKKAIAFLKQNELGRVtflpldSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSY 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 698 RVEELKILNDQNKALQLEVQKLQAVVSEQPNKDVV----------EQMKKCIQEKDEKLRTVEELLETGLIQVATREEEL 767
Cdd:TIGR02168 621 LLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVrpggvitggsAKTNSSILERRREIEELEEKIEELEEKIAELEKAL 700
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 768 NAIRTENSSLTKEVQELKA------KQMDQVAYVLVPFVSLIEDLKKVIHEKDGQIKSVEELLEVELLKVaNKEKTVQLS 841
Cdd:TIGR02168 701 AELRKELEELEEELEQLRKeleelsRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERL-EEAEEELAE 779
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 842 VTSQVQELQNLLRGKEEQVDSMKAALEDLTGREKCTQVCSTPRFEELENVLKEKDNEIKRIEAILKDTKSDLSKKAELLK 921
Cdd:TIGR02168 780 AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAA 859
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 922 EVQDENKLFKSQVEQLNHqnHQQASFPSQEELQTVISEKEKEITDLcNELESLKNAVEHQRKKNNDLREKNWEAMEALAS 1001
Cdd:TIGR02168 860 EIEELEELIEELESELEA--LLNERASLEEALALLRSELEELSEEL-RELESKRSELRRELEELREKLAQLELRLEGLEV 936
|
730
....*....|
gi 1958681418 1002 TEKILQDRVN 1011
Cdd:TIGR02168 937 RIDNLQERLS 946
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
319-1016 |
2.25e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.00 E-value: 2.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 319 EALKKSNKGELSGLLHQLQEKERLLTATKEDAAATK-ERCKQLTQEMMTEKERSSVVMARMKERIGTLEKEHNIFQNKMH 397
Cdd:PTZ00121 1281 DELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKaDEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAE 1360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 398 VSYQETQQMQMKFEQVREQMEAeiahLKQENGILRDAVSNTTNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQ 477
Cdd:PTZ00121 1361 AAEEKAEAAEKKKEEAKKKADA----AKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEA 1436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 478 KKNAEQA--AAQLKVQLQEAERRWEEVQSYIRKRTAEhEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQL 555
Cdd:PTZ00121 1437 KKKAEEAkkADEAKKKAEEAKKAEEAKKKAEEAKKAD-EAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEA 1515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 556 MESEQKRASQEESmqiQVQDILEQNEALKAQIQQfhsqiaaqtsasvLAEELHKViaekdKQLKQTEDSLASEQdhlASK 635
Cdd:PTZ00121 1516 KKAEEAKKADEAK---KAEEAKKADEAKKAEEKK-------------KADELKKA-----EELKKAEEKKKAEE---AKK 1571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 636 EQELKDVQnvnfLLKAEV-QKLQALAKEQAAAAHEVEKMQKSVHV-KDDKIRLLEEQLQR--EVASRVEELKILNDQNKA 711
Cdd:PTZ00121 1572 AEEDKNMA----LRKAEEaKKAEEARIEEVMKLYEEEKKMKAEEAkKAEEAKIKAEELKKaeEEKKKVEQLKKKEAEEKK 1647
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 712 LQLEVQKlqavvSEQPNKDVVEQMKKCIQE---KDEKLRTVEELLETGLIQVATREEElnairtensslTKEVQELKAKQ 788
Cdd:PTZ00121 1648 KAEELKK-----AEEENKIKAAEEAKKAEEdkkKAEEAKKAEEDEKKAAEALKKEAEE-----------AKKAEELKKKE 1711
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 789 MDQVAYVlvpfvsliEDLKKviHEKDGQIKSVEELLEVELLKVANKEKTVQLSVTSQVQELQNLLRGKEEQVDSMKAAL- 867
Cdd:PTZ00121 1712 AEEKKKA--------EELKK--AEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVi 1781
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 868 -EDLTGREKCTQVCSTPRFEELEN---VLKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQ-DENKLFKSQVEQLNHQNH 942
Cdd:PTZ00121 1782 eEELDEEDEKRRMEVDKKIKDIFDnfaNIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQlEEADAFEKHKFNKNNENG 1861
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958681418 943 QQASFPSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLREKNWEAMEALASTEKILQDRVNKTSKE 1016
Cdd:PTZ00121 1862 EDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREIPNNNMAGKNNDIIDDKLDKDEYIKRDAEETREE 1935
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
310-1036 |
5.03e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 5.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 310 LKEKSGVIKEALKKSNKgELSGLLHQLQEKERLLTATKEDAAATKERCKQLTQEMMTEKER---SSVVMARMKERIGTLE 386
Cdd:TIGR02168 300 LEQQKQILRERLANLER-QLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEleeLEAELEELESRLEELE 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 387 KEHNIFQNKMHVSYQETQQMQMKfeqvREQMEAEIAHLKQENGILRdavSNTTNQLESKQSAELNKLRQDCGRLVSELNE 466
Cdd:TIGR02168 379 EQLETLRSKVAQLELQIASLNNE----IERLEARLERLEDRRERLQ---QEIEELLKKLEEAELKELQAELEELEEELEE 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 467 KTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSyirkRTAEHEAAQQDLQSKF--VAKENEVQSLHSKLTDTLVS 544
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAAERELAQLQA----RLDSLERLQENLEGFSegVKALLKNQSGLSGILGVLSE 527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 545 KQQLEQRLMQ-----LMESEQKRASQEESMQIQVQDILEQNEALKA-----------QIQQFHSQIAAQTSASVL----- 603
Cdd:TIGR02168 528 LISVDEGYEAaieaaLGGRLQAVVVENLNAAKKAIAFLKQNELGRVtflpldsikgtEIQGNDREILKNIEGFLGvakdl 607
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 604 ---AEELHKVI-------------AEKDKQLKQT--EDSLASEQDHLAS------------------KEQELKDvqnvnf 647
Cdd:TIGR02168 608 vkfDPKLRKALsyllggvlvvddlDNALELAKKLrpGYRIVTLDGDLVRpggvitggsaktnssileRRREIEE------ 681
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 648 lLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRLLEEQLQREVASRVEELKILNDQNKALQLEVQKLQAVVSEQP 727
Cdd:TIGR02168 682 -LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 728 NKDVVEQMKkcIQEKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKEVQELKAKQmDQVAYVLVPFVSLIEDLK 807
Cdd:TIGR02168 761 AEIEELEER--LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA-ANLRERLESLERRIAATE 837
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 808 KVIHEKDGQIKSVEELLEVELLKVANKEKTVQlSVTSQVQELQNLLRGKEEQVDSMKAALEDLTGREKCTQvcstPRFEE 887
Cdd:TIGR02168 838 RRLEDLEEQIEELSEDIESLAAEIEELEELIE-ELESELEALLNERASLEEALALLRSELEELSEELRELE----SKRSE 912
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 888 LENVLKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQdenklfksQVEQLNHQNHQQASFPSQEELQTVISEKEKEITDL 967
Cdd:TIGR02168 913 LRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEY--------SLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958681418 968 CN-------ELESLKNAVEHQRKKNNDLReknweamEALASTEKILQDrVNKTSKER-QQQVEAVELESKDLLKRLF 1036
Cdd:TIGR02168 985 GPvnlaaieEYEELKERYDFLTAQKEDLT-------EAKETLEEAIEE-IDREARERfKDTFDQVNENFQRVFPKLF 1053
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
584-1008 |
1.14e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 56.59 E-value: 1.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 584 KAQIQQFHSQIAAQT-SASVLAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKE 662
Cdd:TIGR00606 690 EAELQEFISDLQSKLrLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEE 769
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 663 QAAAAHEVEKMQKSVHVKDDKIRLLEE-QLQREVASRVEELKILNDQNKALQLEVQKLQAVVSEQPNK-----DVVEQMK 736
Cdd:TIGR00606 770 QETLLGTIMPEEESAKVCLTDVTIMERfQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHEldtvvSKIELNR 849
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 737 KCIQEKDEK---LRTVEELLETGLIQVATREEELNAIRTENSSLTKEVQELKAKQMDQVAYVLvPFVSLIEDL----KKV 809
Cdd:TIGR00606 850 KLIQDQQEQiqhLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDS-PLETFLEKDqqekEEL 928
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 810 IHEKDGQIKSVEELLEVELLKVANKEKTVQlSVTSQVQE-LQNLLRGKEEQVDSMKAALEDLTGREKctqvcstpRFEEL 888
Cdd:TIGR00606 929 ISSKETSNKKAQDKVNDIKEKVKNIHGYMK-DIENKIQDgKDDYLKQKETELNTVNAQLEECEKHQE--------KINED 999
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 889 ENVLKEKDNEIKRIEAILKDTKSdLSKKAELLKEVQDENKLFKSQVEQLNHQNHQQASFPSQEELQTVISEKEKEITDLC 968
Cdd:TIGR00606 1000 MRLMRQDIDTQKIQERWLQDNLT-LRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQK 1078
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 1958681418 969 NELESLKNAVEHQRKKN-NDLREKNWEAMEALASTEKILQD 1008
Cdd:TIGR00606 1079 GYEKEIKHFKKELREPQfRDAEEKYREMMIVMRTTELVNKD 1119
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
604-1307 |
1.29e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.69 E-value: 1.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 604 AEELHKviAEKDKQL---KQTEDSLASEQDHLASKEQELKDVQNVNFLLKA-EVQKLQALAKEQAAAAHEVEKmqksvhv 679
Cdd:PTZ00121 1142 AEEARK--AEDAKRVeiaRKAEDARKAEEARKAEDAKKAEAARKAEEVRKAeELRKAEDARKAEAARKAEEER------- 1212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 680 KDDKIRLLEEQLQREVASRVEELKilNDQNKALQLEVQKLQAVVSEQPNKDVVEQMKKCIQEKDEKLRTVEELLETgliq 759
Cdd:PTZ00121 1213 KAEEARKAEDAKKAEAVKKAEEAK--KDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKA---- 1286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 760 vatrEEELNAIRTENSSLTKEVQELK-----AKQMDQVAYVLVPFVSLIEDLKKVIHE--KDGQIKSVEELLEVELLKVA 832
Cdd:PTZ00121 1287 ----EEKKKADEAKKAEEKKKADEAKkkaeeAKKADEAKKKAEEAKKKADAAKKKAEEakKAAEAAKAEAEAAADEAEAA 1362
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 833 NKEKTVQLSVTSQVQELQNLLRGKEEQV----DSMKAALEDltgREKCTQVCSTPRFEELENVLKEKDNEIKRIEAILKd 908
Cdd:PTZ00121 1363 EEKAEAAEKKKEEAKKKADAAKKKAEEKkkadEAKKKAEED---KKKADELKKAAAAKKKADEAKKKAEEKKKADEAKK- 1438
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 909 tKSDLSKKAELLKEVQDENK----LFKSQVEQLNHQNHQQASFPSQ--EELQTVISEKEKEITDLCNELESLKNAVE--- 979
Cdd:PTZ00121 1439 -KAEEAKKADEAKKKAEEAKkaeeAKKKAEEAKKADEAKKKAEEAKkaDEAKKKAEEAKKKADEAKKAAEAKKKADEakk 1517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 980 -HQRKKNNDLR--EKNWEAMEALASTEKILQDRVNKTS-------------KERQQQVEAVELESKDLLKRLFPAVSVPS 1043
Cdd:PTZ00121 1518 aEEAKKADEAKkaEEAKKADEAKKAEEKKKADELKKAEelkkaeekkkaeeAKKAEEDKNMALRKAEEAKKAEEARIEEV 1597
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1044 HSNYSEWLRSFEKKAKACMAGPSDTEAVKVLEHRLKEANEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKwKVK 1123
Cdd:PTZ00121 1598 MKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEED-KKK 1676
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1124 AEESRRTIQQMQSSftasEQELERLRHENKAMENLRREREHLEIELEKAEVERSTYVMEVRELKDLLTELQKKLDdsysE 1203
Cdd:PTZ00121 1677 AEEAKKAEEDEKKA----AEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAE----E 1748
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1204 AVRQNEELNLLKTQLNETHSKLQNEQTERKKVADDLHKAQQSLNFIHSKISLKAAGDT--VVIENNDISPEMGSPEKEtM 1281
Cdd:PTZ00121 1749 AKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNfaNIIEGGKEGNLVINDSKE-M 1827
|
730 740
....*....|....*....|....*.
gi 1958681418 1282 SVSLTQTVAHLQQLLQEVNQQLTKEK 1307
Cdd:PTZ00121 1828 EDSAIKEVADSKNMQLEEADAFEKHK 1853
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
680-1034 |
1.68e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 1.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 680 KDDKIRLLEEQ--LQREVASRVEELKILNDQNKALQLEVQKLQAvvSEQPNKDVVEQMKKCIQEKDEKLRTVEELLETGL 757
Cdd:TIGR02169 687 KRELSSLQSELrrIENRLDELSQELSDASRKIGEIEKEIEQLEQ--EEEKLKERLEELEEDLSSLEQEIENVKSELKELE 764
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 758 IQVATREEELNAIRTENSSLTKEVQELKAKQMDQvayvlvpfvsLIEDLKKVIHEKDGQIKSVEELLevellkvaNKEKT 837
Cdd:TIGR02169 765 ARIEELEEDLHKLEEALNDLEARLSHSRIPEIQA----------ELSKLEEEVSRIEARLREIEQKL--------NRLTL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 838 VQLSVTSQVQELQNLLRGKEEQVDSMKAALEDLTGRekctqvcstprFEELENVLKEKDNEIKRIEAILKDTKSDLSKKA 917
Cdd:TIGR02169 827 EKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGK-----------KEELEEELEELEAALRDLESRLGDLKKERDELE 895
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 918 ELLKEVQDENKLFKSQVEQLNHQNHQQasfpsQEELQTViSEKEKEITDLCNELESLKNAVEHQRKKNNDLREKNwEAME 997
Cdd:TIGR02169 896 AQLRELERKIEELEAQIEKKRKRLSEL-----KAKLEAL-EEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVE-EEIR 968
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1958681418 998 ALASTE-KILQD--RVNKTSKERQQQVEAVELESKDLLKR 1034
Cdd:TIGR02169 969 ALEPVNmLAIQEyeEVLKRLDELKEKRAKLEEERKAILER 1008
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
884-1220 |
2.33e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 2.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 884 RFEELENVLKEKDNEIKRIEAILKDTKSDL------SKKAELLKEVQDENK---------LFKSQVEQLNHQNHQQASFP 948
Cdd:TIGR02168 173 RRKETERKLERTRENLDRLEDILNELERQLkslerqAEKAERYKELKAELRelelallvlRLEELREELEELQEELKEAE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 949 SQ-EELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLreknweamealasteKILQDRVNKTSKERQQQVEAVELE 1027
Cdd:TIGR02168 253 EElEELTAELQELEEKLEELRLEVSELEEEIEELQKELYAL---------------ANEISRLEQQKQILRERLANLERQ 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1028 SKDLLKRLfpavsvpshsnySEWLRSFEKKAkacmagpsdtEAVKVLEHRLKEANEMHTLLQLECEKYKSVLAETEGILQ 1107
Cdd:TIGR02168 318 LEELEAQL------------EELESKLDELA----------EELAELEEKLEELKEELESLEAELEELEAELEELESRLE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1108 KLQRSVEQEESKW---KVKAEESRRTIQQMQSSFTASEQELERLRHENKA---------MENLRREREHLEIELEKAEVE 1175
Cdd:TIGR02168 376 ELEEQLETLRSKVaqlELQIASLNNEIERLEARLERLEDRRERLQQEIEEllkkleeaeLKELQAELEELEEELEELQEE 455
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1958681418 1176 RSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNE 1220
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQEN 500
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
328-586 |
4.25e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.56 E-value: 4.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 328 ELSGLLHQLQEKERLLTATKEDAAATKERCKQLTQEMMTEKERSsvvmARMKERIGTLEKEHnifqnkmhvsyQETQQMQ 407
Cdd:COG1196 268 ELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR----RELEERLEELEEEL-----------AELEEEL 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 408 MKFEQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQdcgrlvselnektgkLQQEGVQKKNAEQAAAQ 487
Cdd:COG1196 333 EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE---------------LEELAEELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 488 LKVQLQEAERRWEEvqsyIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQEE 567
Cdd:COG1196 398 LAAQLEELEEAEEA----LLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA 473
|
250
....*....|....*....
gi 1958681418 568 SMQIQVQDILEQNEALKAQ 586
Cdd:COG1196 474 LLEAALAELLEELAEAAAR 492
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
612-1244 |
1.06e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.61 E-value: 1.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 612 AEKDKQLKQTEDSLASEQdhlASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHV-KDDKIRLLEEQ 690
Cdd:PTZ00121 1075 SYKDFDFDAKEDNRADEA---TEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDArKAEEARKAEDA 1151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 691 LQREVASRVEELKILNDQNKALqlEVQKLQAVVSEQPNKDVVEQMKKCIQEKDEKLRTVEELLETGLIQVATREEELNAI 770
Cdd:PTZ00121 1152 KRVEIARKAEDARKAEEARKAE--DAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAV 1229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 771 RTENSSLTKEVQELKAKQMDQVAYVLvpfvSLIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQLSVTSQVQELQ 850
Cdd:PTZ00121 1230 KKAEEAKKDAEEAKKAEEERNNEEIR----KFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKAD 1305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 851 NLLRGKEEQVDSMKAALEDLTGREKCTQvcstprfeelenvLKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQDENKLF 930
Cdd:PTZ00121 1306 EAKKKAEEAKKADEAKKKAEEAKKKADA-------------AKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKK 1372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 931 KSQVEQlnhqnhqqasfpSQEELQTVISEKEKEitdlcnelESLKNAVEHQRKKNNDLREKNWEAMEALASTEKILQDRV 1010
Cdd:PTZ00121 1373 KEEAKK------------KADAAKKKAEEKKKA--------DEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK 1432
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1011 NKTSKERQQQVEAVEleskDLLKRLFPAVSVPSHSNYSEWLRSFEKKAKACMAGPSDTEAVKVLEHRLKEANEmhtLLQL 1090
Cdd:PTZ00121 1433 ADEAKKKAEEAKKAD----EAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADE---AKKA 1505
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1091 ECEKYKSVLAETEGILQKLQRSVEQEESKwkvKAEESRRTIQQMQSSFTASEQELERlRHENKAMENLRREREHLEIELE 1170
Cdd:PTZ00121 1506 AEAKKKADEAKKAEEAKKADEAKKAEEAK---KADEAKKAEEKKKADELKKAEELKK-AEEKKKAEEAKKAEEDKNMALR 1581
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958681418 1171 KAEVERSTYVMEVRELKDLLTELQKklddSYSEAVRQNEELNLLKTQLNETHSKLQNEQTERKKVADDLHKAQQ 1244
Cdd:PTZ00121 1582 KAEEAKKAEEARIEEVMKLYEEEKK----MKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEE 1651
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
410-1231 |
1.78e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.76 E-value: 1.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 410 FEQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQDcgRLVSELNEKTGKLQQEgvQKKNAEQAAAQLK 489
Cdd:TIGR02169 168 FDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQ--ALLKEKREYEGYELLK--EKEALERQKEAIE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 490 VQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQskfvakenevqslhskltdtlvskqQLEQRLMQLMESEQKR------- 562
Cdd:TIGR02169 244 RQLASLEEELEKLTEEISELEKRLEEIEQLLE-------------------------ELNKKIKDLGEEEQLRvkekige 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 563 -ASQEESMQIQVQDILEQNEALKAQIQQFHSQIAAQTSAsvlAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKD 641
Cdd:TIGR02169 299 lEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAE---IEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 642 VQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRLLEEQLQREVASRVEELKILNDQNKALQLEVQKLQA 721
Cdd:TIGR02169 376 VDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 722 VVSEqpNKDVVEQMKKCIQEKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKEVQELKA---------KQMDQV 792
Cdd:TIGR02169 456 KLEQ--LAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKAsiqgvhgtvAQLGSV 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 793 --AYVLVPFVSLIEDLKKVIHEKDGQIKSVEELLEVELL---------KVANKEKTVQLSVTSQVQE-LQNLLRGKEEQV 860
Cdd:TIGR02169 534 geRYATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAgratflplnKMRDERRDLSILSEDGVIGfAVDLVEFDPKYE 613
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 861 DSMKAALEDL-------TGREKCTQVcstpRFEELENVLKEKDNEI----KRIEAILKDTKSDLSKKAELLKEVQDENKL 929
Cdd:TIGR02169 614 PAFKYVFGDTlvvedieAARRLMGKY----RMVTLEGELFEKSGAMtggsRAPRGGILFSRSEPAELQRLRERLEGLKRE 689
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 930 FKSQVEQLNHQnhQQASFpsqeELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLREKNWEAMEALASTEKILQDr 1009
Cdd:TIGR02169 690 LSSLQSELRRI--ENRLD----ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKE- 762
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1010 VNKTSKERQQQVEAVELESKDLLKRLfpavsvpshsnysewlrsfekkakacmagpsdteavkvLEHRLKEANEMHTLLQ 1089
Cdd:TIGR02169 763 LEARIEELEEDLHKLEEALNDLEARL--------------------------------------SHSRIPEIQAELSKLE 804
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1090 LECEKYKSVLAETEGILQKLQRSVEQeeskwkvkAEESRRTIQQMQSSFTASEQELErlrhenKAMENLRREREHLEIEL 1169
Cdd:TIGR02169 805 EEVSRIEARLREIEQKLNRLTLEKEY--------LEKEIQELQEQRIDLKEQIKSIE------KEIENLNGKKEELEEEL 870
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958681418 1170 EKAEVERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHSKLQNEQTE 1231
Cdd:TIGR02169 871 EELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEE 932
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
459-770 |
2.11e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 2.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 459 RLVS---ELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQsyirkrtAEHEAAQQDLQSKfvakENEVQSLH 535
Cdd:TIGR02169 640 RMVTlegELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLK-------RELSSLQSELRRI----ENRLDELS 708
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 536 SKLTDTLVSKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAAQTS---------ASVLAEE 606
Cdd:TIGR02169 709 QELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEdlhkleealNDLEARL 788
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 607 LHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQksvhvkdDKIRL 686
Cdd:TIGR02169 789 SHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI-------ENLNG 861
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 687 LEEQLQREVASRVEELKILNDQNKALQLEVQKLQAVVSEQPNKdvVEQMKKCIQEKDEKLRTVEELLETGLIQVATREEE 766
Cdd:TIGR02169 862 KKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERK--IEELEAQIEKKRKRLSELKAKLEALEEELSEIEDP 939
|
....
gi 1958681418 767 LNAI 770
Cdd:TIGR02169 940 KGED 943
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
351-783 |
3.22e-06 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 51.98 E-value: 3.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 351 AATKERCKQLTQEMmteKERSSVVMARMKERIGTLEKEHNiFQNKMHVSYQETQQMQmkfeQVREQMEAEIAHLKQENGI 430
Cdd:PRK10929 19 AATAPDEKQITQEL---EQAKAAKTPAQAEIVEALQSALN-WLEERKGSLERAKQYQ----QVIDNFPKLSAELRQQLNN 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 431 LRDAVSNttnqLESKQSAelNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRT 510
Cdd:PRK10929 91 ERDEPRS----VPPNMST--DALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 511 AEHEAAQQdlqSKFVAKENEVQSLHSKLtdtlvskQQLEqrLMQLmeSEQKRasQEES-MQIQVQDilEQNEALKAQIQQ 589
Cdd:PRK10929 165 TPNTPLAQ---AQLTALQAESAALKALV-------DELE--LAQL--SANNR--QELArLRSELAK--KRSQQLDAYLQA 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 590 FHSQIAAQ---------TSASVLAE---ELHKVIAE---KDKQLKQTEDSLASEQDHLASKE-QELKDVQNVNFLLKA-- 651
Cdd:PRK10929 227 LRNQLNSQrqreaeralESTELLAEqsgDLPKSIVAqfkINRELSQALNQQAQRMDLIASQQrQAASQTLQVRQALNTlr 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 652 -EVQKLQALAKEQAAAAHEVEK---MQKSvhvkddkirlleEQLQREVAS-RVEELK---ILNDQNKALQLEVQKLQAVV 723
Cdd:PRK10929 307 eQSQWLGVSNALGEALRAQVARlpeMPKP------------QQLDTEMAQlRVQRLRyedLLNKQPQLRQIRQADGQPLT 374
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958681418 724 SEQpnkdvveqmkKCIQekDEKLRTVEELLETGLIQVATREEELNAIRTENSSLT---KEVQE 783
Cdd:PRK10929 375 AEQ----------NRIL--DAQLRTQRELLNSLLSGGDTLILELTKLKVANSQLEdalKEVNE 425
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
914-1232 |
4.56e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.09 E-value: 4.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 914 SKKAELLKEVQDENKLFKSQVEQLNHQNHQQasfpSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKK----NNDLR 989
Cdd:COG1196 209 AEKAERYRELKEELKELEAELLLLKLRELEA----ELEELEAELEELEAELEELEAELAELEAELEELRLEleelELELE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 990 EKNWEAMEALASTEKILQDRVNKTSKERQQQVEAVELESKdllkrlfpavsvpshsnysewLRSFEKKAKAcmagpsDTE 1069
Cdd:COG1196 285 EAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEE---------------------LAELEEELEE------LEE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1070 AVKVLEHRLKEANEMHTLLQLECEKYKSVLAETEGILQKLQRSVE---QEESKWKVKAEESRRTIQQMQSSFTASEQELE 1146
Cdd:COG1196 338 ELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEelaEELLEALRAAAELAAQLEELEEAEEALLERLE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1147 RLRHENKAMENLRREREHLEIELEKAEVERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHSKLQ 1226
Cdd:COG1196 418 RLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLL 497
|
....*.
gi 1958681418 1227 NEQTER 1232
Cdd:COG1196 498 EAEADY 503
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
432-1025 |
5.08e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.19 E-value: 5.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 432 RDAVSNTTNQLESKQSAELNKLrqdCGRLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQsyirkrta 511
Cdd:PRK02224 186 RGSLDQLKAQIEEKEEKDLHER---LNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELE-------- 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 512 EHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQIQQFH 591
Cdd:PRK02224 255 TLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECR 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 592 SQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLASEqdhLASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVE 671
Cdd:PRK02224 335 VAAQAHNEEAESLREDADDLEERAEELREEAAELESE---LEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAE 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 672 KMQKSVHVKDDKIRLLEEQLQ---REVASRVEELKILNDQNKALQLEVQklqavVSEQPNKDVVEqmkkciqEKDEKLRT 748
Cdd:PRK02224 412 DFLEELREERDELREREAELEatlRTARERVEEAEALLEAGKCPECGQP-----VEGSPHVETIE-------EDRERVEE 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 749 VEELLETGLIQVATREEELNAIrTENSSLTKEVQELKAKQMDqvayvlvpFVSLIEDLKKVIHEKDGQIKSVEELLEVEL 828
Cdd:PRK02224 480 LEAELEDLEEEVEEVEERLERA-EDLVEAEDRIERLEERRED--------LEELIAERRETIEEKRERAEELRERAAELE 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 829 LKVANKEKTVQL------SVTSQVQELQNLLRGKEEQVDSMKAALEDLTGREKCTqvcstprfEELENvLKEKDNEIKRI 902
Cdd:PRK02224 551 AEAEEKREAAAEaeeeaeEAREEVAELNSKLAELKERIESLERIRTLLAAIADAE--------DEIER-LREKREALAEL 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 903 EAILKDTKSDLSKKAELLKEVQDENKLFKSQveqlnhQNHQQAsfpsqEELQTVISEKEKEITDLCNELESLKNAVEHQR 982
Cdd:PRK02224 622 NDERRERLAEKRERKRELEAEFDEARIEEAR------EDKERA-----EEYLEQVEEKLDELREERDDLQAEIGAVENEL 690
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 1958681418 983 KKNNDLREK------NWEAMEALASTEKILQDRVNKTSKE-RQQQVEAVE 1025
Cdd:PRK02224 691 EELEELRERrealenRVEALEALYDEAEELESMYGDLRAElRQRNVETLE 740
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1070-1246 |
6.08e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.71 E-value: 6.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1070 AVKVLEHRLKEANEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKVKAEESRRTIQQMQSSFTASEQELERLR 1149
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1150 HENKAMENLRREREHLEIELEKAEVERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHSKLQNEQ 1229
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170
....*....|....*..
gi 1958681418 1230 TERKKVADDLHKAQQSL 1246
Cdd:COG1196 393 RAAAELAAQLEELEEAE 409
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
733-1005 |
6.78e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 50.31 E-value: 6.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 733 EQMKKC--IQEKDEKLRTVEELLETGLIQVATREEELNAIRTENssLTKEVQELKAKqmdqvayvLVPFVSLIEDLKKVI 810
Cdd:PRK05771 4 VRMKKVliVTLKSYKDEVLEALHELGVVHIEDLKEELSNERLRK--LRSLLTKLSEA--------LDKLRSYLPKLNPLR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 811 HEKDGQIKSVEELLEVELLKVANK-EKTVqLSVTSQVQELQN---LLRGKEEQVDSMKA---ALEDLTGREKCTQVCSTP 883
Cdd:PRK05771 74 EEKKKVSVKSLEELIKDVEEELEKiEKEI-KELEEEISELENeikELEQEIERLEPWGNfdlDLSLLLGFKYVSVFVGTV 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 884 RFEELENVLKEKDNEIKRIEAILKDT--------KSDLSKKAELLKEVQDENKlfksqveqlnhqnhqqaSFPSQEELQT 955
Cdd:PRK05771 153 PEDKLEELKLESDVENVEYISTDKGYvyvvvvvlKELSDEVEEELKKLGFERL-----------------ELEEEGTPSE 215
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958681418 956 VISEKEKEITDLCNELESLKNAVEHQRKKNNDL-----------REKNwEAMEALASTEKI 1005
Cdd:PRK05771 216 LIREIKEELEEIEKERESLLEELKELAKKYLEEllalyeyleieLERA-EALSKFLKTDKT 275
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
603-1199 |
9.56e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 50.29 E-value: 9.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 603 LAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQ---ELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQ---KS 676
Cdd:PRK01156 188 LEEKLKSSNLELENIKKQIADDEKSHSITLKEIERlsiEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAEsdlSM 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 677 VHVKDDKIRLLEEQLQR-----EVASRVEELKILNDQNKALQLevqklqavvseqpnKDVVEQMKKCIQEKDEKLRTVEE 751
Cdd:PRK01156 268 ELEKNNYYKELEERHMKiindpVYKNRNYINDYFKYKNDIENK--------------KQILSNIDAEINKYHAIIKKLSV 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 752 LletgliqvATREEELNAIRTENSSLTKEVQELKAKQMDQVAYVlvpfvSLIEDLKKVIHEKDGQIKSVEELLEVEL--- 828
Cdd:PRK01156 334 L--------QKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYL-----KSIESLKKKIEEYSKNIERMSAFISEILkiq 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 829 -------LKVANKEKTVQLSVTSQVQELQNLLRGKEEQVDSMKAALEDLTGREKCTqVCSTPRFEE-LENVLKEKDNEIK 900
Cdd:PRK01156 401 eidpdaiKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCP-VCGTTLGEEkSNHIINHYNEKKS 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 901 RIEAILKDTKSDLSKKAELLKEVQD-ENKLFKSQVEQLNHQNHQQASFPSQeelQTVISEKEKEITDLCNELESLKNavE 979
Cdd:PRK01156 480 RLEEKIREIEIEVKDIDEKIVDLKKrKEYLESEEINKSINEYNKIESARAD---LEDIKIKINELKDKHDKYEEIKN--R 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 980 HQRKKNNDLREKNWEAMEALASTEKILQDRVNKTSKERQQQVEAVELESKDLLKRLFPAVSVPSHS--NYSEWLRSFEKK 1057
Cdd:PRK01156 555 YKSLKLEDLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSirEIENEANNLNNK 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1058 AKACMAGPSDTEAV-KVLEHRLKEANEMHTLLQLECEkYKSVLAETEGILQKLQRSVEQ---EESKWKVKAEESRRTIQQ 1133
Cdd:PRK01156 635 YNEIQENKILIEKLrGKIDNYKKQIAEIDSIIPDLKE-ITSRINDIEDNLKKSRKALDDakaNRARLESTIEILRTRINE 713
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958681418 1134 MQSSFTASEQELERLRHENKAMENLRREREHLEIELEKAEVERSTYVMEVRELKDLLTELQKKLDD 1199
Cdd:PRK01156 714 LSDRINDINETLESMKKIKKAIGDLKRLREAFDKSGVPAMIRKSASQAMTSLTRKYLFEFNLDFDD 779
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
670-979 |
1.05e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 49.93 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 670 VEKMQKS--VHVKDDKIRLLEEQLqREVASRVEELKilndqnKALQL--EVQKLQAVVSEQPNKDVVEQMKKCIQEKDEK 745
Cdd:PRK05771 22 LEALHELgvVHIEDLKEELSNERL-RKLRSLLTKLS------EALDKlrSYLPKLNPLREEKKKVSVKSLEELIKDVEEE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 746 LRTVEElletgliQVATREEELNAIRTENSSLTKEVQELKakqmdqvayvlvPFVSLIEDLK-----KVIHEKDGQIKSV 820
Cdd:PRK05771 95 LEKIEK-------EIKELEEEISELENEIKELEQEIERLE------------PWGNFDLDLSlllgfKYVSVFVGTVPED 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 821 EELLEVELLKVANKEKTVQLSVTSQVqelqnLLRGKEEQVDSMKAALEDLTGREKctqvcSTPRFEELENVLKEKDNEIK 900
Cdd:PRK05771 156 KLEELKLESDVENVEYISTDKGYVYV-----VVVVLKELSDEVEEELKKLGFERL-----ELEEEGTPSELIREIKEELE 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 901 RIEAILKDTKSDLSKKAELLKEvqdenklFKSQVEQLNHQNHQQASFPSqEELQT---------VISEKEKEITDLCNEL 971
Cdd:PRK05771 226 EIEKERESLLEELKELAKKYLE-------ELLALYEYLEIELERAEALS-KFLKTdktfaiegwVPEDRVKKLKELIDKA 297
|
....*...
gi 1958681418 972 ESLKNAVE 979
Cdd:PRK05771 298 TGGSAYVE 305
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
579-1220 |
1.48e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.55 E-value: 1.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 579 QNEALKAQIQQFHSQIAAQTSAsvlAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQa 658
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAE---LEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLE- 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 659 lakeqaaaahevekmQKSVHVKDDKIRLLEEQLQREVASRVEELKILNDQNKALQLEVQKLQAvvseqpnKDVVEQMKKC 738
Cdd:COG1196 302 ---------------QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEA-------EEELEEAEAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 739 IQEKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKEVQELKAKQMDQVayvlvpfvsliedlkkvihEKDGQIK 818
Cdd:COG1196 360 LAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALL-------------------ERLERLE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 819 SVEELLEVELLKVANKEKTVQLSVTSQVQELQNLLRGKEEQVDSMKAALEDLTGREKctqvcstprfeelenvlkekdne 898
Cdd:COG1196 421 EELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEA----------------------- 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 899 ikrIEAILKDTKSDLSKKAELLKEVQDENKLFKSQVEQLNHQNHQQASFPSQEELQTVISEKEKEITDLCNELESLKNAV 978
Cdd:COG1196 478 ---ALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVE 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 979 EHQRKKN--NDLREKNWEAMEALAStEKILQDRVNKTSKERQQQVEAVELESKDLLKRLFPAVSVPSHSNYSEWLRSFEK 1056
Cdd:COG1196 555 DDEVAAAaiEYLKAAKAGRATFLPL-DKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLE 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1057 KAKACMAGPSDTEAVKVLEHRLKEANEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKVKAEESRRTIQQMQS 1136
Cdd:COG1196 634 AALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAE 713
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1137 SFTASEQELERLRHENKAMENLRREREHLEIE--LEKAEVERSTYVMEVRELKDLLTELQKKLDD-------SYSEAVRQ 1207
Cdd:COG1196 714 EERLEEELEEEALEEQLEAEREELLEELLEEEelLEEEALEELPEPPDLEELERELERLEREIEAlgpvnllAIEEYEEL 793
|
650
....*....|...
gi 1958681418 1208 NEELNLLKTQLNE 1220
Cdd:COG1196 794 EERYDFLSEQRED 806
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
444-644 |
1.58e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 1.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 444 SKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDL--Q 521
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELeaQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 522 SKFVAKENEVQSLHSKLTDTLV-----SKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAA 596
Cdd:COG4942 103 KEELAELLRALYRLGRQPPLALllspeDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAE 182
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1958681418 597 QTSAsvlAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQN 644
Cdd:COG4942 183 LEEE---RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
413-643 |
1.68e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 49.24 E-value: 1.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 413 VREQMEAEIAHLKQENGILRDAVSNTTNQLESKQsAELNKLRQDCGrlVSELNEKTGKLQQegvQKKNAEQAAAQLKVQL 492
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAE-AALEEFRQKNG--LVDLSEEAKLLLQ---QLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 493 QEAERRWEEVQSYIRKRTAEHEAAQQDlqskfvakeNEVQSLHSKLtdtlvskQQLEQRLMQLMESEQKRASQeesmqiq 572
Cdd:COG3206 236 AEAEARLAALRAQLGSGPDALPELLQS---------PVIQQLRAQL-------AELEAELAELSARYTPNHPD------- 292
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958681418 573 VQDILEQNEALKAQIQQFHSQIAAQTSASVlaeelhKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQ 643
Cdd:COG3206 293 VIALRAQIAALRAQLQQEAQRILASLEAEL------EALQAREASLQAQLAQLEARLAELPELEAELRRLE 357
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
301-1043 |
5.34e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 5.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 301 DEALCVVDLLKEK---SGVIKEALKKSNKGELSGLLHQLQEKERLLTATKEDAAATKERCKQLTQEMMTEKER----SSV 373
Cdd:TIGR02169 208 EKAERYQALLKEKreyEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKikdlGEE 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 374 VMARMKERIGTLEKEHNIFQNKMHVSYQETQQMQ---MKFEQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQsAEL 450
Cdd:TIGR02169 288 EQLRVKEKIGELEAEIASLERSIAEKERELEDAEerlAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELK-EEL 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 451 NKLRQDcgrlVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENE 530
Cdd:TIGR02169 367 EDLRAE----LEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEE 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 531 VQSLHSKLtdtlvskQQLEQRLMQL---MESEQKRASQEESMQIQVQDILEQNE----ALKAQIQQFHSQIAAQTSASVL 603
Cdd:TIGR02169 443 KEDKALEI-------KKQEWKLEQLaadLSKYEQELYDLKEEYDRVEKELSKLQrelaEAEAQARASEERVRGGRAVEEV 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 604 AEELHKVIAEKDKQLKQTEDSLASEQDHLASK-------EQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKS 676
Cdd:TIGR02169 516 LKASIQGVHGTVAQLGSVGERYATAIEVAAGNrlnnvvvEDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSE 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 677 VHVKDDKIRLLEEQLQRE-----------VASRVEELKILNDQNKALQLE---VQKLQAVV----SEQPNKDVVEQMKKC 738
Cdd:TIGR02169 596 DGVIGFAVDLVEFDPKYEpafkyvfgdtlVVEDIEAARRLMGKYRMVTLEgelFEKSGAMTggsrAPRGGILFSRSEPAE 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 739 IQEKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKEVQELKAKqmdqvayvlvpfvslIEDLKKVIHEKDGQIK 818
Cdd:TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKE---------------IEQLEQEEEKLKERLE 740
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 819 SVEELLEVELLKVANKEktvqlsvtSQVQELQNLLRGKEEQVDSMKAALEDLTGREkctqvcSTPRFEELENVLKEKDNE 898
Cdd:TIGR02169 741 ELEEDLSSLEQEIENVK--------SELKELEARIEELEEDLHKLEEALNDLEARL------SHSRIPEIQAELSKLEEE 806
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 899 IKRIEAILKDTKSDLSKKAELLKEVQDENKLFKSQVEQLNHQ-----NHQQASFPSQEELQTVISEKEKEITDLCNELES 973
Cdd:TIGR02169 807 VSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQiksieKEIENLNGKKEELEEELEELEAALRDLESRLGD 886
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 974 LKNAVEHQRKKNNDLREKNWEAMEALastekilqDRVNKTSKERQQQVEAVELESKDLLKRLFPAVSVPS 1043
Cdd:TIGR02169 887 LKKERDELEAQLRELERKIEELEAQI--------EKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPE 948
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
482-992 |
9.41e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.98 E-value: 9.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 482 EQAAAQLKVQLQEAERRWEEVQSYIrKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLmeseQK 561
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFI-KRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEL----EE 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 562 RASQEESMQIQVQDILEQNEALKAQIQQFHSQIaaqtsasvlaEELHKVIAEKDKQLKQTEDSLASEQDHLASKEqELKD 641
Cdd:PRK03918 236 LKEEIEELEKELESLEGSKRKLEEKIRELEERI----------EELKKEIEELEEKVKELKELKEKAEEYIKLSE-FYEE 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 642 VQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVhvkdDKIRLLEEQLQREVAsRVEELKILNDQNKALQLEVQKLQA 721
Cdd:PRK03918 305 YLDELREIEKRLSRLEEEINGIEERIKELEEKEERL----EELKKKLKELEKRLE-ELEERHELYEEAKAKKEELERLKK 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 722 VVSEQPNKDVVEQMKKCIQEKDEKLRTVEELletgliqvatrEEELNAIRTENSSLTKEVQELKAKQM-----------D 790
Cdd:PRK03918 380 RLTGLTPEKLEKELEELEKAKEEIEEEISKI-----------TARIGELKKEIKELKKAIEELKKAKGkcpvcgrelteE 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 791 QVAYVLVPFVSLIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEK-TVQLSVTSQVQELQNLLRG--------KEEQVD 861
Cdd:PRK03918 449 HRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESElIKLKELAEQLKELEEKLKKynleelekKAEEYE 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 862 SMKAALEDLTGREKCTQVcSTPRFEELENVLKEKDNEIKRIEAILKDTKSDLSKKA-----ELLKEVQDENKLFKSQVEQ 936
Cdd:PRK03918 529 KLKEKLIKLKGEIKSLKK-ELEKLEELKKKLAELEKKLDELEEELAELLKELEELGfesveELEERLKELEPFYNEYLEL 607
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958681418 937 LNHQNHQQASFPSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLREKN 992
Cdd:PRK03918 608 KDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEE 663
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
479-639 |
1.10e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.87 E-value: 1.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 479 KNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSkfvakENEVQSLHSkltdtlvskqQLEQRLMQLmeS 558
Cdd:COG3096 508 QALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDA-----AEELEELLA----------ELEAQLEEL--E 570
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 559 EQKRASQEESMQIQvqdilEQNEALKAQIQQFHSQ----IAAQTSASVLAEELHKVIA-------------EKDKQLKQT 621
Cdd:COG3096 571 EQAAEAVEQRSELR-----QQLEQLRARIKELAARapawLAAQDALERLREQSGEALAdsqevtaamqqllEREREATVE 645
|
170
....*....|....*...
gi 1958681418 622 EDSLASEQDHLASKEQEL 639
Cdd:COG3096 646 RDELAARKQALESQIERL 663
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
418-1001 |
1.22e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.60 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 418 EAEIAHLKQENGILRDAVSNTTNQLESKQ---SAELNKLRqdcgRLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQE 494
Cdd:PRK03918 188 TENIEELIKEKEKELEEVLREINEISSELpelREELEKLE----KEVKELEELKEEIEELEKELESLEGSKRKLEEKIRE 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 495 AERRWEEVqsyiRKRTAEHEAAQQDLQS-KFVAKE-NEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQEESMQIQ 572
Cdd:PRK03918 264 LEERIEEL----KKEIEELEEKVKELKElKEKAEEyIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEER 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 573 VQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKViaeKDKQLKQTEDSLASEQDHLASKEQELKDVQNVnflLKAE 652
Cdd:PRK03918 340 LEELKKKLKELEKRLEELEERHELYEEAKAKKEELERL---KKRLTGLTPEKLEKELEELEKAKEEIEEEISK---ITAR 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 653 VQKLQALAKEQAAAAHEVEKMQKSVHV------KDDKIRLLEEQLqREVASRVEELKILNDQNKALQLEVQKLQAVVSEQ 726
Cdd:PRK03918 414 IGELKKEIKELKKAIEELKKAKGKCPVcgreltEEHRKELLEEYT-AELKRIEKELKEIEEKERKLRKELRELEKVLKKE 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 727 PNKDVVEQMKKCIQEKDEKLRTVE-ELLETGLIQVATREEELNAIRTENSSLTKEVQELKAkqmdqvayvlvpfvsLIED 805
Cdd:PRK03918 493 SELIKLKELAEQLKELEEKLKKYNlEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE---------------LKKK 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 806 LKKVIHEkdgqIKSVEELLEVELLKVANKEKTVQLSVTSQVQELQNLLRGKEEQVDSmKAALEDLTGREKCTQVCSTPRF 885
Cdd:PRK03918 558 LAELEKK----LDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDA-EKELEREEKELKKLEEELDKAF 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 886 EELENVLKEKDNEIKRIEAILKD-TKSDLSKKAELLKEVQDENKLFKSQVEQLNHQNHQ-QASFPSQEELQTVISEKEKE 963
Cdd:PRK03918 633 EELAETEKRLEELRKELEELEKKySEEEYEELREEYLELSRELAGLRAELEELEKRREEiKKTLEKLKEELEEREKAKKE 712
|
570 580 590
....*....|....*....|....*....|....*...
gi 1958681418 964 ITDLCNELESLKNAVEHQRKKNNDLREKNWEAMEALAS 1001
Cdd:PRK03918 713 LEKLEKALERVEELREKVKKYKALLKERALSKVGEIAS 750
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
718-1289 |
1.57e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.26 E-value: 1.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 718 KLQAVVSEQPNKdvVEQMKKCIQEKDEKLRTVEELLETGLIQVATR-EEELNAIRTENSSLTKEVQELKAKQMDQVAYVL 796
Cdd:pfam15921 246 QLEALKSESQNK--IELLLQQHQDRIEQLISEHEVEITGLTEKASSaRSQANSIQSQLEIIQEQARNQNSMYMRQLSDLE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 797 VPFVSLIEDLKKVIHEKDGQIKSVEELLEVELLKVAN-KEKTVQLSVTS-----QVQELQNLLRGKEEQVDSMKAALEDL 870
Cdd:pfam15921 324 STVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEaRTERDQFSQESgnlddQLQKLLADLHKREKELSLEKEQNKRL 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 871 TGREKCTQVCstprFEELENVLKEKDNEIKRIEAILKDTKSD------------------LSKKAELLKEVQDENKLFKS 932
Cdd:pfam15921 404 WDRDTGNSIT----IDHLRRELDDRNMEVQRLEALLKAMKSEcqgqmerqmaaiqgknesLEKVSSLTAQLESTKEMLRK 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 933 QVEQLNHQNHQ-QASFPSQEELQTVISEKEK-------EITDL-------CNELESLKNAVEHQRKKNNDLREKNWEAME 997
Cdd:pfam15921 480 VVEELTAKKMTlESSERTVSDLTASLQEKERaieatnaEITKLrsrvdlkLQELQHLKNEGDHLRNVQTECEALKLQMAE 559
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 998 ALASTEKILQDRVNKTSKERQQ-------QVEAVELESKDLLKRLFPAVSVPSHSNYSEWLRSFE--------KKAKACM 1062
Cdd:pfam15921 560 KDKVIEILRQQIENMTQLVGQHgrtagamQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEarvsdlelEKVKLVN 639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1063 AGPSDTEAVK-VLEHRLKEANEMHTllqlecekyksvlaeTEGILQKLQRSVEQEESKWKVKAEESRRTIQQMQSSFTAS 1141
Cdd:pfam15921 640 AGSERLRAVKdIKQERDQLLNEVKT---------------SRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSA 704
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1142 EQELERLRHENKAMENLRREREHLEIELEKaeverstyvmEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNET 1221
Cdd:pfam15921 705 QSELEQTRNTLKSMEGSDGHAMKVAMGMQK----------QITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKL 774
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958681418 1222 HSKLQNEQTERKKVADDLHKAQQSLNFIHSKIS-LKAAGDTVVIENNDISPEMGSPEKETMSVSLTQTV 1289
Cdd:pfam15921 775 SQELSTVATEKNKMAGELEVLRSQERRLKEKVAnMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTL 843
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
399-599 |
1.66e-04 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 45.13 E-value: 1.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 399 SYQETQQMQMKFEQVREQMEAEIAHLKQENGiLRDAVSNTTNQLESKQS--------AELNKLRQDCGRLVSELNEKTGK 470
Cdd:pfam09787 5 AKQELADYKQKAARILQSKEKLIASLKEGSG-VEGLDSSTALTLELEELrqerdllrEEIQKLRGQIQQLRTELQELEAQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 471 LQQEGVQkknAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDL-------QSKFVAKENEVQSLHSKLTD--- 540
Cdd:pfam09787 84 QQEEAES---SREQLQELEEQLATERSARREAEAELERLQEELRYLEEELrrskatlQSRIKDREAEIEKLRNQLTSksq 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958681418 541 TLVSKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAAQTS 599
Cdd:pfam09787 161 SSSSQSELENRLHQLTETLIQKQTMLEALSTEKNSLVLQLERMEQQIKELQGEGSNGTS 219
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
310-632 |
1.90e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.83 E-value: 1.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 310 LKEKSGVI---------KEALKKSNKGELSGLLHQLQEKERLLTATKEDAAATKERCKQLTQEMMTEKERSSVVMARMKE 380
Cdd:TIGR02169 648 LFEKSGAMtggsraprgGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQ 727
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 381 rigtLEKEHNIFQNKMHVSYQETQQMQMKFEQVR----------EQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAEL 450
Cdd:TIGR02169 728 ----LEQEEEKLKERLEELEEDLSSLEQEIENVKselkeleariEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKL 803
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 451 NKLRQDCGRLVSELNEKTGKLQQEG------------------VQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAE 512
Cdd:TIGR02169 804 EEEVSRIEARLREIEQKLNRLTLEKeylekeiqelqeqridlkEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESR 883
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 513 HEaaqqDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEA------LKAQ 586
Cdd:TIGR02169 884 LG----DLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEelsledVQAE 959
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1958681418 587 IQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLASEQDHL 632
Cdd:TIGR02169 960 LQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAI 1005
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
470-755 |
2.28e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 45.66 E-value: 2.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 470 KLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLhsKLTDTLVSKQQLE 549
Cdd:PLN02939 64 KLQSNTDENGQLENTSLRTVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDF--QLEDLVGMIQNAE 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 550 QRLMQLmesEQKRASQEEsmqiQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSL---- 625
Cdd:PLN02939 142 KNILLL---NQARLQALE----DLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELlirg 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 626 ASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRLLEEQLqreVASRVEELKIL 705
Cdd:PLN02939 215 ATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKF---IVAQEDVSKLS 291
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1958681418 706 NDQNKALQLEVQKLQAVVSEQPNKdvVEQMKKCIQEKDEKLRTVEELLET 755
Cdd:PLN02939 292 PLQYDCWWEKVENLQDLLDRATNQ--VEKAALVLDQNQDLRDKVDKLEAS 339
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
472-711 |
2.49e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.39 E-value: 2.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 472 QQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVakENEVQSLHSKLTDTLVSKQQLEQR 551
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLL--LQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 552 LMQLmesEQKRASQEESMQIQVQDILEQNeaLKAQIQQFHSQIAAQtsaSVLAEELHKVIAEKDKQLKQTEDSLASEqdh 631
Cdd:COG3206 242 LAAL---RAQLGSGPDALPELLQSPVIQQ--LRAQLAELEAELAEL---SARYTPNHPDVIALRAQIAALRAQLQQE--- 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 632 laskeqelkdVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRLLEEQLQ------REVASRVEELKIL 705
Cdd:COG3206 311 ----------AQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEvarelyESLLQRLEEARLA 380
|
....*.
gi 1958681418 706 NDQNKA 711
Cdd:COG3206 381 EALTVG 386
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
478-1039 |
2.88e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.52 E-value: 2.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 478 KKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSkltdtlvSKQQLEQRLMQLME 557
Cdd:PTZ00121 1236 KKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADE-------AKKAEEKKKADEAK 1308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 558 SEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQ 637
Cdd:PTZ00121 1309 KKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE 1388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 638 ELKdvqnvnfllKAEvqKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRLLEEQLQREVASRVEELKILNDQNKALQLEVQ 717
Cdd:PTZ00121 1389 EKK---------KAD--EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 718 KLQAVVSEQPNKDVVEQMKKCIQEK---DEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKEVQELKAKQMDQVAY 794
Cdd:PTZ00121 1458 KAEEAKKKAEEAKKADEAKKKAEEAkkaDEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKAD 1537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 795 VL--VPFVSLIEDLKKVIH-EKDGQIKSVEELLEVELLKVANKEKTVQLSVTSQVQELQNLLRGKEEQVDSMKAALEDLT 871
Cdd:PTZ00121 1538 EAkkAEEKKKADELKKAEElKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEE 1617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 872 GREKCTQVCSTPRFEELENVLKEKD-NEIKRIEAILKDTKSDLSKKAELLKEVQDENKLFKSQVEQLNHQNHQQASFPSQ 950
Cdd:PTZ00121 1618 AKIKAEELKKAEEEKKKVEQLKKKEaEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKE 1697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 951 EELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLREKNWEamealaSTEKILQDRVNKTSKERQQQVEAVELESKD 1030
Cdd:PTZ00121 1698 AEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE------DKKKAEEAKKDEEEKKKIAHLKKEEEKKAE 1771
|
....*....
gi 1958681418 1031 LLKRLFPAV 1039
Cdd:PTZ00121 1772 EIRKEKEAV 1780
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
845-1245 |
3.02e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 3.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 845 QVQELQNLLRGKEEQVDSMKAALEDLTGREKctqvcstpRFEELENVLKEKDNEIKRIEAILK--DTKSDLSKKAELLKE 922
Cdd:COG4717 72 ELKELEEELKEAEEKEEEYAELQEELEELEE--------ELEELEAELEELREELEKLEKLLQllPLYQELEALEAELAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 923 VQDENKLFKSQVEQLNHQNHQQasfpsqEELQTVISEKEKEITDLCNEL-ESLKNAVEHQRKKNNDLREKNWEAMEALAS 1001
Cdd:COG4717 144 LPERLEELEERLEELRELEEEL------EELEAELAELQEELEELLEQLsLATEEELQDLAEELEELQQRLAELEEELEE 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1002 TEKILQD---RVNKTSKERQQQVEAVELESKDLLKRLFPAVSVPSHSNYSEWLRSFEKKAKACMAGPSDTEAVKVLEHRL 1078
Cdd:COG4717 218 AQEELEEleeELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREK 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1079 KEANEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKVKAEESRRtIQQMQSSFTASEQELERLRHENKAMENL 1158
Cdd:COG4717 298 ASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEE-LQELLREAEELEEELQLEELEQEIAALL 376
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1159 RREREHLEIELEKAEVERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQN-----EELNLLKTQLNETHSKLQNEQTERK 1233
Cdd:COG4717 377 AEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDeeeleEELEELEEELEELEEELEELREELA 456
|
410
....*....|..
gi 1958681418 1234 KVADDLHKAQQS 1245
Cdd:COG4717 457 ELEAELEQLEED 468
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
802-1247 |
3.65e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.05 E-value: 3.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 802 LIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQlsvtsQVQELQNLLRGKEEQVDSMKAALEDLTGREKCTQvcs 881
Cdd:PRK03918 194 LIKEKEKELEEVLREINEISSELPELREELEKLEKEVK-----ELEELKEEIEELEKELESLEGSKRKLEEKIRELE--- 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 882 tPRFEELENVLKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQDENKLFKSQVEQLNHQNHQQASFPSQEELQTVISEKE 961
Cdd:PRK03918 266 -ERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELK 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 962 KEITDLCNELESLKNAVEhqrkKNNDLREKNwEAMEALASTEKILQ-DRVNKTSKERQQQVEAVELESKDLLKRLFPAVS 1040
Cdd:PRK03918 345 KKLKELEKRLEELEERHE----LYEEAKAKK-EELERLKKRLTGLTpEKLEKELEELEKAKEEIEEEISKITARIGELKK 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1041 VPSHSNYS-EWLRSFEKKAKACMAGPSD----------TEAVKVLEHRLKEANEMHTLLQLECEKYKSVLAETEGILQKL 1109
Cdd:PRK03918 420 EIKELKKAiEELKKAKGKCPVCGRELTEehrkelleeyTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLK 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1110 Q-----RSVEQEESKWKV-KAEESRRTIQQMQSSFTASEQELERLRHENKAMENLRREREHLEIELEKAEVERSTYVMEV 1183
Cdd:PRK03918 500 ElaeqlKELEEKLKKYNLeELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKEL 579
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958681418 1184 R--------ELKDLLTELQK------KLDDSYSEAVRQNEELNLLKTQLNETHSKLQNEQTERKKVADDLHKAQQSLN 1247
Cdd:PRK03918 580 EelgfesveELEERLKELEPfyneylELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYS 657
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
393-1130 |
3.91e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.11 E-value: 3.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 393 QNKMHVSYQetqQMQMKFEQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKlRQDCGRLVSELnektgklq 472
Cdd:pfam15921 255 QNKIELLLQ---QHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQ-NSMYMRQLSDL-------- 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 473 qegvqkknaEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRL 552
Cdd:pfam15921 323 ---------ESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKEL 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 553 MQLMESEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAAQTSasvlaeelhkviaEKDKQLKQTEDSLASEQDHL 632
Cdd:pfam15921 394 SLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKS-------------ECQGQMERQMAAIQGKNESL 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 633 ASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRLLEEQ---LQREVASRVEELKILNDQN 709
Cdd:pfam15921 461 EKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEitkLRSRVDLKLQELQHLKNEG 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 710 KALQLEVQKLQAVVSEQPNKD-VVEQMKKCIQEKDEKLRTVEELLETGLIQVATREEELNAIRTEnsslTKEVQELKAKQ 788
Cdd:pfam15921 541 DHLRNVQTECEALKLQMAEKDkVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLE----LQEFKILKDKK 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 789 MDQVAYVLVPFVSLIEDLKKVIHEKDGQIKSvEELLEVELLKVANKEKTVQLSVTSQVQELQNLLRGKEEQVDSMKAALE 868
Cdd:pfam15921 617 DAKIRELEARVSDLELEKVKLVNAGSERLRA-VKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTN 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 869 DLTGREKCTQvcstPRFEELENVLKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQDENKLFKSQVEQLNHQNH--QQAS 946
Cdd:pfam15921 696 KLKMQLKSAQ----SELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHflKEEK 771
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 947 FPSQEELQTVISEKEKeitdLCNELESLKNAVEHQRKKNNDLREKNWEAMEALASTEKILQDRVNKTSKER-QQQVEAVE 1025
Cdd:pfam15921 772 NKLSQELSTVATEKNK----MAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKlQHTLDVKE 847
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1026 LE------SKDLLKRLF-PAVSVPSHSNYsewlrsfekkakacmagPSDTEAVKVLEHRLKEANEMHtllqlecekyKSV 1098
Cdd:pfam15921 848 LQgpgytsNSSMKPRLLqPASFTRTHSNV-----------------PSSQSTASFLSHHSRKTNALK----------EDP 900
|
730 740 750
....*....|....*....|....*....|..
gi 1958681418 1099 LAETEGILQKLQRSVEQEESKWKVKAEESRRT 1130
Cdd:pfam15921 901 TRDLKQLLQELRSVINEEPTVQLSKAEDKGRA 932
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
951-1254 |
4.10e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 4.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 951 EELQTVISEKEKEITDLCNELESLKNAVEHQRKKNN---DLREKNWEAMEA--------LASTEKILQDRVNKTSkERQQ 1019
Cdd:TIGR02169 187 ERLDLIIDEKRQQLERLRREREKAERYQALLKEKREyegYELLKEKEALERqkeaierqLASLEEELEKLTEEIS-ELEK 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1020 QVEAVELESKDLLKRLFPAVSVPSHSNYSEwLRSFEKKAKACMAgpsdteAVKVLEHRLKEANEMHTLLQLECEKYKSVL 1099
Cdd:TIGR02169 266 RLEEIEQLLEELNKKIKDLGEEEQLRVKEK-IGELEAEIASLER------SIAEKERELEDAEERLAKLEAEIDKLLAEI 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1100 AETEGILQKLQRSVEQEESKWKVKAEESRRTIQQMQSSFTASEQELERLRHENKAMENLRREREHLEIELEKaeversty 1179
Cdd:TIGR02169 339 EELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDR-------- 410
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958681418 1180 vmevreLKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHSKLQNEQTERKKVADDLHKAQQSLNFIHSKIS 1254
Cdd:TIGR02169 411 ------LQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD 479
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1074-1246 |
5.24e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 5.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1074 LEHRLKEANE-MHTLLQLE--CEKYKSvLAETEGILQKLQRSV-----EQEESKWKVKAEESRRTIQQMQSSFTASEQEL 1145
Cdd:COG4913 240 AHEALEDAREqIELLEPIRelAERYAA-ARERLAELEYLRAALrlwfaQRRLELLEAELEELRAELARLEAELERLEARL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1146 ERLRHENKAMENLRRER-----EHLEIELEKAEVERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNE 1220
Cdd:COG4913 319 DALREELDELEAQIRGNggdrlEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEE 398
|
170 180
....*....|....*....|....*.
gi 1958681418 1221 THSKLQNEQTERKKVADDLHKAQQSL 1246
Cdd:COG4913 399 ELEALEEALAEAEAALRDLRRELREL 424
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
477-686 |
6.34e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 6.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 477 QKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQ---DLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLM 553
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERriaALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 554 QLME--SEQKRASQEESMQIQVQDILEQ----------------NEALKAQIQQFHSQIAA----QTSASVLAEELHKVI 611
Cdd:COG4942 101 AQKEelAELLRALYRLGRQPPLALLLSPedfldavrrlqylkylAPARREQAEELRADLAElaalRAELEAERAELEALL 180
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958681418 612 AEKDKQLKQTEDSLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRL 686
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGKL 255
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
437-726 |
7.48e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.96 E-value: 7.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 437 NTTNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQ---EAERRWEEVQSYIRKRtaEH 513
Cdd:pfam17380 285 SERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERmamERERELERIRQEERKR--EL 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 514 EAAQQDLQSKFVAKENEVQSLHskltdtlVSKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQiQQFHSQ 593
Cdd:pfam17380 363 ERIRQEEIAMEISRMRELERLQ-------MERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAE-QEEARQ 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 594 IAAQTSASVLAEELHKVIAEKDKQLKQTEDSLASEQDHLASK--------EQELKDVQNVNFL---LKAEVQKLQALAKE 662
Cdd:pfam17380 435 REVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKlelekekrDRKRAEEQRRKILekeLEERKQAMIEEERK 514
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958681418 663 QAAAAHEVEKMQKSVHvKDDKIRLLEEQLQREVasRVEELKILNDQNKALQLEVQKLQAVVSEQ 726
Cdd:pfam17380 515 RKLLEKEMEERQKAIY-EEERRREAEEERRKQQ--EMEERRRIQEQMRKATEERSRLEAMERER 575
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
414-655 |
8.17e-04 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 44.05 E-value: 8.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 414 REQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNK--------LRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAA 485
Cdd:NF012221 1564 KERAEADRQRLEQEKQQQLAAISGSQSQLESTDQNALETngqaqrdaILEESRAVTKELTTLAQGLDALDSQATYAGESG 1643
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 486 AQLKVQLqeAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKlTDTLVskQQLEQRLMQLMESEQKRASQ 565
Cdd:NF012221 1644 DQWRNPF--AGGLLDRVQEQLDDAKKISGKQLADAKQRHVDNQQKVKDAVAK-SEAGV--AQGEQNQANAEQDIDDAKAD 1718
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 566 EESMQIQVqdILEQNEALKAQIQQFHS----QIAAQTSASVLAEELHKVIAEKdKQLKQTEDSLASEQ----DHLASKEQ 637
Cdd:NF012221 1719 AEKRKDDA--LAKQNEAQQAESDANAAandaQSRGEQDASAAENKANQAQADA-KGAKQDESDKPNRQgaagSGLSGKAY 1795
|
250
....*....|....*...
gi 1958681418 638 ELKDVQNVNFLLKAEVQK 655
Cdd:NF012221 1796 SVEGVAEPGSHINPDSPA 1813
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1064-1247 |
8.34e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 8.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1064 GPSDTEAVKVLEHRLKEANEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKwkVKAEESRRTIQQMqssftasEQ 1143
Cdd:COG4913 605 GFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDE--IDVASAEREIAEL-------EA 675
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1144 ELERLRHENKAMENLRREREHLEIELEKAEVERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHS 1223
Cdd:COG4913 676 ELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERF 755
|
170 180
....*....|....*....|....
gi 1958681418 1224 KLQNEQTERKKVADDLHKAQQSLN 1247
Cdd:COG4913 756 AAALGDAVERELRENLEERIDALR 779
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
322-534 |
9.96e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 9.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 322 KKSNKGELSGLLHQLQEKERLLTATKEDAAATKERCKQLTQEMmtekerssvvmARMKERIGTLEKEHNIFQNKMHVSYQ 401
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRI-----------AALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 402 ETQQMQMKFEQVREQMEAEIAHLKQENGI-----------LRDAVSNTT--NQLESKQSAELNKLRQDcgrlVSELNEKT 468
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQpplalllspedFLDAVRRLQylKYLAPARREQAEELRAD----LAELAALR 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958681418 469 GKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSL 534
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
414-534 |
1.05e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 414 REQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQE-------GVQKKNAEQAAA 486
Cdd:COG4913 304 LARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLeallaalGLPLPASAEEFA 383
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1958681418 487 QLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSL 534
Cdd:COG4913 384 ALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASL 431
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
594-754 |
1.11e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 43.31 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 594 IAAQTSASVLAEELHKVIAEKDKQlkqTEDSLASEQDHLASKEQELKDvqnvnflLKAEVQKLQalakeqaaaaHEVEKM 673
Cdd:COG2433 373 IRGLSIEEALEELIEKELPEEEPE---AEREKEHEERELTEEEEEIRR-------LEEQVERLE----------AEVEEL 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 674 QKSVHVKDDKIRLLEEQLQRevASRVEELKILNDQnkalqlEVQKLQAvvseqpnkdVVEQMKKCIQEKDEKLRTVEELL 753
Cdd:COG2433 433 EAELEEKDERIERLERELSE--ARSEERREIRKDR------EISRLDR---------EIERLERELEEERERIEELKRKL 495
|
.
gi 1958681418 754 E 754
Cdd:COG2433 496 E 496
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1074-1258 |
1.16e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.39 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1074 LEHRLKEANEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKwKVKAEESRRTIQQMQSSFTASEQELERLRHEN- 1152
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEE-LEEAEEELEEAEAELAEAEEALLEAEAELAEAe 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1153 --------------KAMENLRREREHLEIELEKAEVERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQL 1218
Cdd:COG1196 379 eeleelaeellealRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1958681418 1219 NETHSKLQNEQTERKKVADDLHKAQQSLNFIHSKISLKAA 1258
Cdd:COG1196 459 EALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE 498
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
411-599 |
1.17e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 411 EQVREQM---EAEIAHLKQENGILrdAVSNTTNQLESKQS---AELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQA 484
Cdd:COG3206 185 PELRKELeeaEAALEEFRQKNGLV--DLSEEAKLLLQQLSeleSQLAEARAELAEAEARLAALRAQLGSGPDALPELLQS 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 485 AA--QLKVQLQEAERRWEE-----------VQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQR 551
Cdd:COG3206 263 PViqQLRAQLAELEAELAElsarytpnhpdVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEAR 342
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1958681418 552 LMQLMESEQKRASQEESMQIQvQDILEQneaLKAQIQQFHSQIAAQTS 599
Cdd:COG3206 343 LAELPELEAELRRLEREVEVA-RELYES---LLQRLEEARLAEALTVG 386
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1069-1246 |
1.28e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.39 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1069 EAVKVLEHRLKEANEMHTLLQLECEKYKSVLAETE-------GILQKLQRSVEQEESKWKVKAEESRRTIQQMQssftAS 1141
Cdd:COG1196 246 AELEELEAELEELEAELAELEAELEELRLELEELEleleeaqAEEYELLAELARLEQDIARLEERRRELEERLE----EL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1142 EQELERLRHE----NKAMENLRREREHLEIELEKAEVERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQ 1217
Cdd:COG1196 322 EEELAELEEEleelEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ 401
|
170 180
....*....|....*....|....*....
gi 1958681418 1218 LNETHSKLQNEQTERKKVADDLHKAQQSL 1246
Cdd:COG1196 402 LEELEEAEEALLERLERLEEELEELEEAL 430
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
462-643 |
1.28e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.89 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 462 SELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQskfvAKENEVQSLHSKLTDT 541
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIA----EAEAEIEERREELGER 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 542 LVSKQQ---LEQRLMQLMESEQ-----KRASQEESMQIQVQDILEQNEALKAQIQQFHSQI--------AAQTSASVLAE 605
Cdd:COG3883 92 ARALYRsggSVSYLDVLLGSESfsdflDRLSALSKIADADADLLEELKADKAELEAKKAELeaklaeleALKAELEAAKA 171
|
170 180 190
....*....|....*....|....*....|....*...
gi 1958681418 606 ELHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQ 643
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAE 209
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
386-1269 |
1.63e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.11 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 386 EKEHNIFQNKMHVSYQET-QQMQMKFEQVREQMEAEIAHLKQENGI---LRDAVSNTTNQLESKQ------SAELNKLRQ 455
Cdd:TIGR00606 173 QKFDEIFSATRYIKALETlRQVRQTQGQKVQEHQMELKYLKQYKEKaceIRDQITSKEAQLESSReivksyENELDPLKN 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 456 DCGRlVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQE--------AERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAK 527
Cdd:TIGR00606 253 RLKE-IEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELkmekvfqgTDEQLNDLYHNHQRTVREKERELVDCQRELEKL 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 528 ENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQEESMQIQVQ-DILEQNEALKAQIQQFHSQIAAQTS-----AS 601
Cdd:TIGR00606 332 NKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLElDGFERGPFSERQIKNFHTLVIERQEdeaktAA 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 602 VLAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHvKD 681
Cdd:TIGR00606 412 QLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELS-KA 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 682 DKIRLLEEQLQREVASRVEELKILndqnKALQLEVQKLQAVVSEQPNKDVVEQMKKCIQEKDEKLRTVEELLETGLIQva 761
Cdd:TIGR00606 491 EKNSLTETLKKEVKSLQNEKADLD----RKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTS-- 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 762 treeelnairtenssltkevqelkakqmdqvayvLVPFVSLIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEktvqls 841
Cdd:TIGR00606 565 ----------------------------------LLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLE------ 604
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 842 vtsqvqELQNLLRGKEEQVDSMKAALEDltgreKCTQVCSTPRFEELENVLKEKDNEIKRIEAILKDTKSDLSkkaELLK 921
Cdd:TIGR00606 605 ------QNKNHINNELESKEEQLSSYED-----KLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYS---QFIT 670
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 922 EVQDEN--------KLFKSQVE----QLNHQNHQQASFPSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLR 989
Cdd:TIGR00606 671 QLTDENqsccpvcqRVFQTEAElqefISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELR 750
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 990 EKN-------WEAMEALASTEKILQDRVNKTSKERQQQ-----VEAVELESKDLLKRLFPAVSVPSHSNYSEWLRSFEKK 1057
Cdd:TIGR00606 751 NKLqkvnrdiQRLKNDIEEQETLLGTIMPEEESAKVCLtdvtiMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQE 830
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1058 AKACMAG-PSDTEAVKVLEHRLKEANEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKvKAEESRRTIQQMQS 1136
Cdd:TIGR00606 831 KQEKQHElDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELST-EVQSLIREIKDAKE 909
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1137 SFTASEQELERLRHENKAMENLRRErehleiELEKAEVERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEelnllkT 1216
Cdd:TIGR00606 910 QDSPLETFLEKDQQEKEELISSKET------SNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKE------T 977
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|...
gi 1958681418 1217 QLNETHSKLQNEQTERKKVADDLHKAQQSLNFIHSKISLKAAGDTVVIENNDI 1269
Cdd:TIGR00606 978 ELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENEL 1030
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
885-1184 |
1.66e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.80 E-value: 1.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 885 FEELENVLKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQDENKLFKSQVEQLNHQNHQQASFPSQEELQTVISEKEKEI 964
Cdd:pfam17380 336 YAEQERMAMERERELERIRQEERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKI 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 965 TDLCNELESLKNAVEHQRKknndlreknwEAMEALASTEKILQDRVNKTSKERQQQVEAVELESKDLLKRLFpavsvpsh 1044
Cdd:pfam17380 416 QQQKVEMEQIRAEQEEARQ----------REVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKL-------- 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1045 snysEWLRSFEKKAKAcmagpsDTEAVKVLEHRLKEANEM-------HTLLQLECEKYKSVLAETEgilqklQRSVEQEE 1117
Cdd:pfam17380 478 ----ELEKEKRDRKRA------EEQRRKILEKELEERKQAmieeerkRKLLEKEMEERQKAIYEEE------RRREAEEE 541
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958681418 1118 SKWKVKAEESRRTIQQMQSSfTASEQELERLRHENKAMenlrreREHLEIELEKAEVERSTYVMEVR 1184
Cdd:pfam17380 542 RRKQQEMEERRRIQEQMRKA-TEERSRLEAMEREREMM------RQIVESEKARAEYEATTPITTIK 601
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
508-729 |
1.73e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 1.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 508 KRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQI 587
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 588 QQFHSQIAAQTSASVLAEELHKV--------IAEKDKQLKQTEDSLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQAL 659
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLalllspedFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 660 AKEQAAAAHEVEKMQKSVhvkddkiRLLEEQLQREVASRVEELKILNDQNKALQLEVQKLQAVVSEQPNK 729
Cdd:COG4942 180 LAELEEERAALEALKAER-------QKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
544-787 |
1.94e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 544 SKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAAQTSAsvlAEELHKVIAEKDKQLKQTED 623
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQE---LAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 624 SLASEQDHLAS---KEQELKDVQNVNFLLKAEvqklqalakeqaaaahEVEKMQKSVHVkddkIRLLEEQLQREVASRVE 700
Cdd:COG4942 98 ELEAQKEELAEllrALYRLGRQPPLALLLSPE----------------DFLDAVRRLQY----LKYLAPARREQAEELRA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 701 ELKILNDQNKALQLEVQKLQAVVSEQpnKDVVEQMKKCIQEKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKE 780
Cdd:COG4942 158 DLAELAALRAELEAERAELEALLAEL--EEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
....*..
gi 1958681418 781 VQELKAK 787
Cdd:COG4942 236 AAAAAER 242
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
613-974 |
2.09e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 2.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 613 EKDKQLKQTEDSLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAhEVEKMQKSVHVKDDKIRLLEEQLQ 692
Cdd:COG4717 78 EELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQ-ELEALEAELAELPERLEELEERLE 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 693 rEVASRVEELKILNDQNKALQLEVQKLQAVVSEQpNKDVVEQMKKCIQEKDEKLRTVEELLETGLIQVATREEELNAIRT 772
Cdd:COG4717 157 -ELRELEEELEELEAELAELQEELEELLEQLSLA-TEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLEN 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 773 ENSSLTKEVQELKAKQMDQVAYVLVPFVSLIEDLKKVIHEKDGQIKSVEELLEVELLkVANKEKTVQLSVTSQVQELQNL 852
Cdd:COG4717 235 ELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFL-LLAREKASLGKEAEELQALPAL 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 853 LRGKEEQVDSMKAALEDLTGREKCTQVCSTPRFEELENVLKEKDNEIKR---------IEAILK----DTKSDLSKKAEL 919
Cdd:COG4717 314 EELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEElqleeleqeIAALLAeagvEDEEELRAALEQ 393
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958681418 920 LKEVQD---ENKLFKSQVEQLNHQNHQQASFPSQEELQTVISEKEKEITDLCNELESL 974
Cdd:COG4717 394 AEEYQElkeELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEEL 451
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
477-596 |
2.65e-03 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 41.57 E-value: 2.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 477 QKKNAEQAAAQLKVQLQEAERRwEEVQSYIRKRTAEHEAAQQDLQskfvAKENEVQSLHSKLTDTLVSKQQLEQRLMQLM 556
Cdd:COG1566 84 ALAQAEAQLAAAEAQLARLEAE-LGAEAEIAAAEAQLAAAQAQLD----LAQRELERYQALYKKGAVSQQELDEARAALD 158
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1958681418 557 ESEQKRASQEESMQIQVQDILEQNE--ALKAQIQQFHSQIAA 596
Cdd:COG1566 159 AAQAQLEAAQAQLAQAQAGLREEEElaAAQAQVAQAEAALAQ 200
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1060-1246 |
2.67e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 2.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1060 ACMAGPSDTEAVKVLEHRLKEANEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKV---KAEESRRTIQQMQS 1136
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRAleqELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1137 SFTASEQELERLRHE-NKAMENLRREREHLEIEL-----EKAEVERSTYVME--VRELKDLLTEL---QKKLDDSYSEAV 1205
Cdd:COG4942 91 EIAELRAELEAQKEElAELLRALYRLGRQPPLALllspeDFLDAVRRLQYLKylAPARREQAEELradLAELAALRAELE 170
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1958681418 1206 RQNEELNLLKTQLNETHSKLQNEQTERKKVADDLHKAQQSL 1246
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAEL 211
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
610-1247 |
3.17e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.93 E-value: 3.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 610 VIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQNvNFLLKAEVQKlqalakEQAAAAHEVEKMQKSVHVKDDKIRLLEE 689
Cdd:TIGR04523 27 IANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDK-NLNKDEEKIN------NSNNKIKILEQQIKDLNDKLKKNKDKIN 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 690 QLQREVASRVEELKILNDQNKALQLEVQKLqavvseqpnkdvveqmKKCIQEKDEKLRTVeelletgLIQVATREEELNA 769
Cdd:TIGR04523 100 KLNSDLSKINSEIKNDKEQKNKLEVELNKL----------------EKQKKENKKNIDKF-------LTEIKKKEKELEK 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 770 IRTENSSLTKEVQELKAKQmdqvayvlvpfvsliEDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQL--SVTSQVQ 847
Cdd:TIGR04523 157 LNNKYNDLKKQKEELENEL---------------NLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKnkSLESQIS 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 848 ELQNLLRGKEEQVDSMKAALEDLTGREKCTQVCSTPRFEELENV---LKEKDNEIKRIEAILKDTKSDLSK-KAELL--- 920
Cdd:TIGR04523 222 ELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIkkqLSEKQKELEQNNKKIKELEKQLNQlKSEISdln 301
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 921 -KEVQDENKLFKSQVEQLNHQnhqqasfpsQEELQTVISEKEKEITDLCNELESLKNAVEHqrkKNNDLREKNWEAMEAL 999
Cdd:TIGR04523 302 nQKEQDWNKELKSELKNQEKK---------LEEIQNQISQNNKIISQLNEQISQLKKELTN---SESENSEKQRELEEKQ 369
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1000 ASTEKIlqdrvNKTSKERQQQVEAVELESKDLLKRLfpavsvpshSNYSEWLRSFEKKAKacmagpSDTEAVKVLEHRLK 1079
Cdd:TIGR04523 370 NEIEKL-----KKENQSYKQEIKNLESQINDLESKI---------QNQEKLNQQKDEQIK------KLQQEKELLEKEIE 429
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1080 EANEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKV---KAEESRRTIQQMQSSFTASEQELERLRHENKAME 1156
Cdd:TIGR04523 430 RLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVlsrSINKIKQNLEQKQKELKSKEKELKKLNEEKKELE 509
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1157 N----LRREREHLEIELEKAEVERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELNLlkTQLNETHSKLQNEQTER 1232
Cdd:TIGR04523 510 EkvkdLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEI--EELKQTQKSLKKKQEEK 587
|
650
....*....|....*
gi 1958681418 1233 KKVADDLHKAQQSLN 1247
Cdd:TIGR04523 588 QELIDQKEKEKKDLI 602
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
479-1237 |
3.64e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 3.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 479 KNAEQAAAQLKvQLQEAERRWEEVQSyIRKRTAEHEAAQQDLQSKFVAKEneVQSLHSKLTDTLVSKQQLEQRLMQLMES 558
Cdd:COG4913 242 EALEDAREQIE-LLEPIRELAERYAA-ARERLAELEYLRAALRLWFAQRR--LELLEAELEELRAELARLEAELERLEAR 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 559 EQKRASQEESMQIQVQDI-LEQNEALKAQIQQFHSQIAAQTSAsvlAEELHKVIAEKDKQLKQTEDSLASEQ----DHLA 633
Cdd:COG4913 318 LDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERR---RARLEALLAALGLPLPASAEEFAALRaeaaALLE 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 634 SKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRlleEQLQREVASRVEELKILNDqnkaLq 713
Cdd:COG4913 395 ALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALR---DALAEALGLDEAELPFVGE----L- 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 714 LEVQKLQA-----------------VVSEQPNKDVveqmkkciqekdekLRTVEELLETGLIQ---VATREEELNAIRTE 773
Cdd:COG4913 467 IEVRPEEErwrgaiervlggfaltlLVPPEHYAAA--------------LRWVNRLHLRGRLVyerVRTGLPDPERPRLD 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 774 NSSLTKEVQ--------ELKAKQMDQVAYVLVpfvSLIEDLKKviHEK----DGQIKSVEELLEVELLKVA--------- 832
Cdd:COG4913 533 PDSLAGKLDfkphpfraWLEAELGRRFDYVCV---DSPEELRR--HPRaitrAGQVKGNGTRHEKDDRRRIrsryvlgfd 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 833 NKEKTVQLsvTSQVQELQNLLRGKEEQVDSMKAALEDLTGREKCTQVCSTPRFEELEnvLKEKDNEIKRIEAILKDTKSD 912
Cdd:COG4913 608 NRAKLAAL--EAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEID--VASAEREIAELEAELERLDAS 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 913 LSKKAELLKEVQDENKLFKSQVEQLnhqnhqqasfpsqEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLREKN 992
Cdd:COG4913 684 SDDLAALEEQLEELEAELEELEEEL-------------DELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAL 750
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 993 WEAMEALASTEKILQDRVNKTSKERQQQVEAVELESKDLLKRLfpavsvpshsnySEWLRSFEKKAKACMAGPSDTEAVK 1072
Cdd:COG4913 751 LEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAM------------RAFNREWPAETADLDADLESLPEYL 818
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1073 VLEHRLKEANemhtLLQLEcEKYKSVLAETEGilqklqRSVEQEESkwkvKAEESRRTIQqmqssftaseqelERLRHEN 1152
Cdd:COG4913 819 ALLDRLEEDG----LPEYE-ERFKELLNENSI------EFVADLLS----KLRRAIREIK-------------ERIDPLN 870
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1153 KAMENLR-REREHLEIELEKAEVErstyvmEVRELKDLLTELQKKL---DDSYSEAvrQNEELNLLKTQLneTHSKLQNE 1228
Cdd:COG4913 871 DSLKRIPfGPGRYLRLEARPRPDP------EVREFRQELRAVTSGAslfDEELSEA--RFAALKRLIERL--RSEEEESD 940
|
....*....
gi 1958681418 1229 QTERKKVAD 1237
Cdd:COG4913 941 RRWRARVLD 949
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
332-1033 |
4.02e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.50 E-value: 4.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 332 LLHQLQEKERLLTATKEDAAATKERCKQLTQEMMTEKERSSVVMARMKERIGTLEKEhnifqnKMHVSYQETQQMQMKFE 411
Cdd:pfam02463 228 YLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQ------EEELKLLAKEEEELKSE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 412 QVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAAQLK-- 489
Cdd:pfam02463 302 LLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKkl 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 490 --VQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQEE 567
Cdd:pfam02463 382 esERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLL 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 568 SMqiQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQNVnf 647
Cdd:pfam02463 462 KD--ELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVA-- 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 648 LLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRLLEEQLQREVASRVEELKILNDQNKALQLEVQKLQAVVSEQP 727
Cdd:pfam02463 538 VENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADE 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 728 -NKDVVEQMKKCIQEKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKEVQELKAKQMDQVAyvlvpfvSLIEDL 806
Cdd:pfam02463 618 dDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEK-------AESELA 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 807 KKVIHEKDGQIKSVEELLEVELLKVANKEKTVQLSVTSQVQELQNLLRGKEEQVDSMKAALEDLTGREKCTQVCSTPRFE 886
Cdd:pfam02463 691 KEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELS 770
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 887 ELENVLKEKDNEIKR---IEAILKDTKSDLSKKAELLKEVQDENKLFKSQVEQLNHQNHQQASFPSQEELQTVISEKEKE 963
Cdd:pfam02463 771 LKEKELAEEREKTEKlkvEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEK 850
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 964 ITDLCNELESLKNAVEHQRKKNNDLREKNWEAMEALASTEKILQDRVNKTSKERQQQVEAVELESKDLLK 1033
Cdd:pfam02463 851 LAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIE 920
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
844-1034 |
4.27e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.29 E-value: 4.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 844 SQVQELQNLLRGKEEQVDSMKAALEDLTGRekctqvcstprFEELENVLKEKDNEIKRIEAILKDTKSDLSKKAELLKEV 923
Cdd:COG1579 17 SELDRLEHRLKELPAELAELEDELAALEAR-----------LEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 924 QDENklfksQVEQLNHQnhqqasfpsQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLREKNWEAMEALASTE 1003
Cdd:COG1579 86 RNNK-----EYEALQKE---------IESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEEL 151
|
170 180 190
....*....|....*....|....*....|.
gi 1958681418 1004 KILQDRVNKTSKERQQQVEAVElesKDLLKR 1034
Cdd:COG1579 152 AELEAELEELEAEREELAAKIP---PELLAL 179
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1098-1246 |
4.34e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.46 E-value: 4.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 1098 VLAETEGILQKLQRSVEQEESKWKVKAEESRRTIQQMQSSFTASEQELERLRHEnkaMENLRREREHLEIELEKAEVERS 1177
Cdd:COG1196 194 ILGELERQLEPLERQAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAE---LEELEAELEELEAELAELEAELE 270
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958681418 1178 TYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHSKLQNEQTERKKVADDLHKAQQSL 1246
Cdd:COG1196 271 ELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL 339
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
323-528 |
7.22e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.87 E-value: 7.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 323 KSNKGELSGLLHQLQEKERLLTATKEDAAATKERCKQLTQEMMTEKERssvVMARMKERIGTLEKEHNIFQNkMHVSYQE 402
Cdd:pfam15921 649 KDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNK---LKMQLKSAQSELEQTRNTLKS-MEGSDGH 724
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 403 TQQMQMKFEQVREQMEAEIAHLKQENGILRDAVSNTtNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAE 482
Cdd:pfam15921 725 AMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNA-NKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLK 803
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1958681418 483 QAAAQLKVQLQEAERRWEEVQSYIRKRtaEHEAAQQDLQSKFVAKE 528
Cdd:pfam15921 804 EKVANMEVALDKASLQFAECQDIIQRQ--EQESVRLKLQHTLDVKE 847
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
349-643 |
7.39e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.71 E-value: 7.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 349 DAAATKERCKQLTQEMMTEKERSSVVMAR----MKERIGTLEKEHNIFQ---NKMhvsyQETQQMQMKFEQVREQMEAEI 421
Cdd:COG3096 285 ERALELRRELFGARRQLAEEQYRLVEMAReleeLSARESDLEQDYQAASdhlNLV----QTALRQQEKIERYQEDLEELT 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 422 AHLKQENGILRDAVSNTTNQLESKQSAElnklrQDCGRLVSELNEKTGKL---QQEGVQKKNAEQAAAQLKVQLQEAERR 498
Cdd:COG3096 361 ERLEEQEEVVEEAAEQLAEAEARLEAAE-----EEVDSLKSQLADYQQALdvqQTRAIQYQQAVQALEKARALCGLPDLT 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 499 WEEVQSYIrkrtAEHEAAQQDLQSkfvakenEVQSLHSKLTDTLVSKQQLEQrLMQLME--------------------- 557
Cdd:COG3096 436 PENAEDYL----AAFRAKEQQATE-------EVLELEQKLSVADAARRQFEK-AYELVCkiageversqawqtarellrr 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681418 558 --SEQKRASQEESMQIQVQDI---LEQNEALKAQIQQFHSQIAAQTSAsvlAEELHKVIAEKDKQLKQTEDSLASEQDHL 632
Cdd:COG3096 504 yrSQQALAQRLQQLRAQLAELeqrLRQQQNAERLLEEFCQRIGQQLDA---AEELEELLAELEAQLEELEEQAAEAVEQR 580
|
330
....*....|.
gi 1958681418 633 ASKEQELKDVQ 643
Cdd:COG3096 581 SELRQQLEQLR 591
|
|
| |
