|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
460-1220 |
1.76e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 88.58 E-value: 1.76e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 460 LVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQ---QDLQSKFVAKENEVQSLHS 536
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQkelYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 537 KLTDTLVSKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDK 616
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 617 QLKQTEDSLASEQDHLASKEQELKDvqnvnfllkaEVQKLQALAKEQAAAAHEVEKmqKSVHVKDDKIRLLEEQLQREVA 696
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLED----------RRERLQQEIEELLKKLEEAEL--KELQAELEELEEELEELQEELE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 697 SRVEELKILNDQNKALQLEVQKLQAVVSE-QPNKDVVEQMKKCIQEKDEKLRTVEELLETG---------LIQV------ 760
Cdd:TIGR02168 458 RLEEALEELREELEEAEQALDAAERELAQlQARLDSLERLQENLEGFSEGVKALLKNQSGLsgilgvlseLISVdegyea 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 761 ---ATREEELNAIRTENSSLTKE-VQELKAKQMDQVPFVSLIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQLS 836
Cdd:TIGR02168 538 aieAALGGRLQAVVVENLNAAKKaIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKA 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 837 VTSQvqeLQNLLrgkeeQVDSMKAALED------------LTGREKCTQVCSTPRFEELENVLKEKDNEIKRIEAILKDT 904
Cdd:TIGR02168 618 LSYL---LGGVL-----VVDDLDNALELakklrpgyrivtLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEEL 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 905 KSDLSKKAELLKEVQDENKLFKSQVEQLNHQNHQQASFPSQEELQTVISEKEKE-ITDLCNELESLKNAVEHQRKKNNDL 983
Cdd:TIGR02168 690 EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEqLEERIAQLSKELTELEAEIEELEER 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 984 REKNWEAMEALASTEKILQDRVNKTSKERQQQVEAVELESKDL--LKRLFPAVsvpshsnysewlrsfekkakacmagps 1061
Cdd:TIGR02168 770 LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELtlLNEEAANL--------------------------- 822
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 1062 dTEAVKVLEHRLKEANEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKVKAEESRRTIQQMQSSFTASEQELE 1141
Cdd:TIGR02168 823 -RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSE 901
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 1142 RLRHENKAMENLRREREHLEIELEKAEVERSTYVMEVRELKTQLNETHS-KLQNEQTERKKVADDLHKAQQSLNFIHSKI 1220
Cdd:TIGR02168 902 ELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSlTLEEAEALENKIEDDEEEARRRLKRLENKI 981
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
448-974 |
2.22e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.89 E-value: 2.22e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 448 AELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAK 527
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 528 ENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEEL 607
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 608 HKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRLL 687
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 688 EEQLQREVASRVEELKILNDQNKALQLEVQKLQAVVSEQPNKDVVEQMKKCIQEKDEkLRTVEELLETgLIQVATREEEL 767
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAV-LIGVEAAYEA-ALEAALAAALQ 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 768 NAIRTENSSLTKEVQELKAKQMDQVPFVSLIEDLKKVIHEKDgqIKSVEELLEVELLKVANKEKTVQLSVTSQVQELQNL 847
Cdd:COG1196 550 NIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAA--LARGAIGAAVDLVASDLREADARYYVLGDTLLGRTL 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 848 LRGKEEQVDSMKAALEDLTGREKCTQVCSTPRFEELENVLKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQDENKLFKS 927
Cdd:COG1196 628 VAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEER 707
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 1958681438 928 QVEQLNHQNHQQASFPSQEELQTVISEKEKEITDLCNELESLKNAVE 974
Cdd:COG1196 708 ELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALE 754
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
606-1199 |
7.28e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 67.01 E-value: 7.28e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 606 ELHKVIAEKDKQLKQTED---SLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDD 682
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENieeLIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEG 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 683 KIRLLEEQLqREVASRVEELKilndqnkalqLEVQKLQAVVSE----QPNKDVVEQMKKCIQEKDEKLRTVEELLE--TG 756
Cdd:PRK03918 253 SKRKLEEKI-RELEERIEELK----------KEIEELEEKVKElkelKEKAEEYIKLSEFYEEYLDELREIEKRLSrlEE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 757 LIQVATRE-EELNAIRTENSSLTKEVQELKAKQMDQVPFVSLIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQL 835
Cdd:PRK03918 322 EINGIEERiKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKE 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 836 SVTSQVQELQNLLRGKEEQVDSMKAALEDLTGREKCTQVCSTPRFEE-LENVLKEKDNEIKRIEAILKDTKSDLSK---- 910
Cdd:PRK03918 402 EIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEhRKELLEEYTAELKRIEKELKEIEEKERKlrke 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 911 KAELLKEVQDENKLFK--SQVEQLNHQNHQQASFpSQEELQTVISEKEKeITDLCNELESLKNAVEHQRKKNNDLREKNW 988
Cdd:PRK03918 482 LRELEKVLKKESELIKlkELAEQLKELEEKLKKY-NLEELEKKAEEYEK-LKEKLIKLKGEIKSLKKELEKLEELKKKLA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 989 EAMEALASTEKILQDRVNKTSKERQQQVEAVELEskdlLKRLFPAvsvpshsnYSEWLRsfekkakacmagpsdteaVKV 1068
Cdd:PRK03918 560 ELEKKLDELEEELAELLKELEELGFESVEELEER----LKELEPF--------YNEYLE------------------LKD 609
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 1069 LEHRLKEANEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKVKAEESRRtiqqmqSSFTASEQELERLRHENK 1148
Cdd:PRK03918 610 AEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELR------EEYLELSRELAGLRAELE 683
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958681438 1149 AMENLRREREHLEIELEKAEVERSTYVMEVRELK------TQLNETHSKLQNEQTER 1199
Cdd:PRK03918 684 ELEKRREEIKKTLEKLKEELEEREKAKKELEKLEkalervEELREKVKKYKALLKER 740
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
444-1014 |
6.69e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 63.50 E-value: 6.69e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 444 SKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTaEHEAAQQDLQSK 523
Cdd:TIGR04523 148 KKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNK-SLESQISELKKQ 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 524 FVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAA--QTSAS 601
Cdd:TIGR04523 227 NNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDlnNQKEQ 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 602 VLAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDvqnvnflLKAEVQKLQAlakeqaaaahEVEKMQKSVHVKD 681
Cdd:TIGR04523 307 DWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQ-------LKKELTNSES----------ENSEKQRELEEKQ 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 682 DKIrlleEQLQREVASRVEELKILNDQNKALQLEVQKlqavvSEQPNKDVVEQMKKCIQEKDEKLRTVEELLETGLIQva 761
Cdd:TIGR04523 370 NEI----EKLKKENQSYKQEIKNLESQINDLESKIQN-----QEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKN-- 438
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 762 trEEELNAIRTENSSLTKEVQELKakqmdqvpfvSLIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVqLSVTSQV 841
Cdd:TIGR04523 439 --NSEIKDLTNQDSVKELIIKNLD----------NTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKEL-KKLNEEK 505
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 842 QELQNLLRGKEEQVDSMKAaledltgrekctqvcstpRFEELENVLKEKDNEIKRIEAILKDTKSDLsKKAELLKEVQDE 921
Cdd:TIGR04523 506 KELEEKVKDLTKKISSLKE------------------KIEKLESEKKEKESKISDLEDELNKDDFEL-KKENLEKEIDEK 566
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 922 NKlfksQVEQLNHQnhQQASFPSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLREKNweamEALASTEKIL 1001
Cdd:TIGR04523 567 NK----EIEELKQT--QKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKEN----EKLSSIIKNI 636
|
570
....*....|...
gi 1958681438 1002 QDRVNKTSKERQQ 1014
Cdd:TIGR04523 637 KSKKNKLKQEVKQ 649
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
319-1025 |
5.61e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.93 E-value: 5.61e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 319 EALKKSNKGELSGLLHQLQEKERLLTATKEDAAATKERCKQlTQEMMTEKERSSVVMARMKERIGTLEKEHNIFQNKMHV 398
Cdd:PTZ00121 1143 EEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARK-AEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAE 1221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 399 SYQETQQMQMKFEQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAelnkLRQDCGRLVSELNEKTGKLQQEGVQK 478
Cdd:PTZ00121 1222 DAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAA----IKAEEARKADELKKAEEKKKADEAKK 1297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 479 KNAEQAAAQLKVQLQEAeRRWEEVQSYIRKRTAEHEAAQQDLQSKfvAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMES 558
Cdd:PTZ00121 1298 AEEKKKADEAKKKAEEA-KKADEAKKKAEEAKKKADAAKKKAEEA--KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE 1374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 559 EQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDK--QLKQTEDSlASEQDHLASKE 636
Cdd:PTZ00121 1375 EAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKadEAKKKAEE-AKKADEAKKKA 1453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 637 QELKDVQNVNflLKAEVQKLQALAKEQAAAAHEVEKMQKSVhvKDDKIRLLEEQLQREVASRVEELKILNDQNKALqlEV 716
Cdd:PTZ00121 1454 EEAKKAEEAK--KKAEEAKKADEAKKKAEEAKKADEAKKKA--EEAKKKADEAKKAAEAKKKADEAKKAEEAKKAD--EA 1527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 717 QKLQAVVSEQPNKDVVEQMKKCIQEKDEKLRTVEELLEtglIQVATREEELNAIRTENSSLTKEVQELKAKQMDQVPFVS 796
Cdd:PTZ00121 1528 KKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKK---AEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEE 1604
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 797 LIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQLSVTSQVQELQnllrgKEEQVDSMKAALEDLTGREKCTQVcs 876
Cdd:PTZ00121 1605 KKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELK-----KAEEENKIKAAEEAKKAEEDKKKA-- 1677
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 877 tprfeelENVLKEKDNEIKRIEAILKdtKSDLSKKAELLKEVQDENKLFKSQVEQLNHQNHQQASFPSQEElqtvisEKE 956
Cdd:PTZ00121 1678 -------EEAKKAEEDEKKAAEALKK--EAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEA------EED 1742
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958681438 957 KEITDLCNELESLKNAVEHQRKknndlrEKNWEAMEALASTEKILQDRVNKTSKERQQQVEAVELESKD 1025
Cdd:PTZ00121 1743 KKKAEEAKKDEEEKKKIAHLKK------EEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFD 1805
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
319-1011 |
1.08e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.15 E-value: 1.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 319 EALKKSNKGELSGLLHQLQEKERLLTATKEDAAATK-ERCKQLTQEMMTEKERSSVVMARMKERIGTLEKEHNIFQNKMH 397
Cdd:PTZ00121 1281 DELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKaDEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAE 1360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 398 VSYQETQQMQMKFEQVREQMEAeiahLKQENGILRDAVSNTTNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQ 477
Cdd:PTZ00121 1361 AAEEKAEAAEKKKEEAKKKADA----AKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEA 1436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 478 KKNAEQA--AAQLKVQLQEAERRWEEVQSYIRKRTAEhEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQL 555
Cdd:PTZ00121 1437 KKKAEEAkkADEAKKKAEEAKKAEEAKKKAEEAKKAD-EAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEA 1515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 556 MESEQKRASQEESmqiQVQDILEQNEALKAQIQQfhsqiaaqtsasvLAEELHKViaekdKQLKQTEDSLASEQdhlASK 635
Cdd:PTZ00121 1516 KKAEEAKKADEAK---KAEEAKKADEAKKAEEKK-------------KADELKKA-----EELKKAEEKKKAEE---AKK 1571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 636 EQELKDVQnvnfLLKAEV-QKLQALAKEQAAAAHEVEKMQKSVHV-KDDKIRLLEEQLQR--EVASRVEELKILNDQNKA 711
Cdd:PTZ00121 1572 AEEDKNMA----LRKAEEaKKAEEARIEEVMKLYEEEKKMKAEEAkKAEEAKIKAEELKKaeEEKKKVEQLKKKEAEEKK 1647
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 712 LQLEVQKlqavvSEQPNKDVVEQMKKCIQE---KDEKLRTVEELLETGLIQVATREEElnairtensslTKEVQELKAKQ 788
Cdd:PTZ00121 1648 KAEELKK-----AEEENKIKAAEEAKKAEEdkkKAEEAKKAEEDEKKAAEALKKEAEE-----------AKKAEELKKKE 1711
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 789 MDQVpfvSLIEDLKKviHEKDGQIKSVEELLEVELLKVANKEKTVQLSVTSQVQELQNLLRGKEEQVDSMKAAL--EDLT 866
Cdd:PTZ00121 1712 AEEK---KKAEELKK--AEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVieEELD 1786
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 867 GREKCTQVCSTPRFEELEN---VLKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQ-DENKLFKSQVEQLNHQNHQQASF 942
Cdd:PTZ00121 1787 EEDEKRRMEVDKKIKDIFDnfaNIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQlEEADAFEKHKFNKNNENGEDGNK 1866
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958681438 943 PSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLREKNWEAMEALASTEKILQDRVNKTSKE 1011
Cdd:PTZ00121 1867 EADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREIPNNNMAGKNNDIIDDKLDKDEYIKRDAEETREE 1935
|
|
| Rib_recp_KP_reg |
pfam05104 |
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ... |
29-146 |
1.53e-08 |
|
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.
Pssm-ID: 461548 [Multi-domain] Cd Length: 140 Bit Score: 54.74 E-value: 1.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 29 MKETLYDDVLAKQKREQKLISTKADKKKAEKKKNKKK------EIQNGTLHESD----SEHVPQDFKLSDASPVEDEqfV 98
Cdd:pfam05104 1 MKETSYEEALAKQRRELKKTPTEKEKKKKEKKKEKKKkskkkeEKPNGKLPESEqadeSEEEPREFKTPDEAPSAAL--E 78
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1958681438 99 PAPLSVAETSSSVRERKKKEKKQKPSLEEHIIKESDASKIPGKKVEPV 146
Cdd:pfam05104 79 PEPVPTPVPAPVEPEPAPPSESPAPSPKEKKKKEKKSAKVEPAETPEA 126
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
411-657 |
3.45e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.14 E-value: 3.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 411 EQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQdcgrlVSELNEKTGKLQQEgvqKKNAEQAAAQLKV 490
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQ-----ISALRKDLARLEAE---VEQLEERIAQLSK 754
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 491 QLQEAERRWEEVQSYIRK---RTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQEE 567
Cdd:TIGR02168 755 ELTELEAEIEELEERLEEaeeELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA 834
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 568 SMQIQVQDILEQNEALKAQIQQFHSQIAaqtSASVLAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQNVNF 647
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAEIE---ELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRS 911
|
250
....*....|
gi 1958681438 648 LLKAEVQKLQ 657
Cdd:TIGR02168 912 ELRRELEELR 921
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
575-1211 |
3.71e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.23 E-value: 3.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 575 DILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDK--QLKQTEDSLASEQDHLASKEQELKDVQNVNFLLKAE 652
Cdd:PTZ00121 1082 DAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKaeDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAE 1161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 653 VQKlQALAKEQAAAAHEVEKMQKSVHV-KDDKIRLLEEQLQREVASRVEELKILNDQNKALqlEVQKLQAVVSEQPNKDV 731
Cdd:PTZ00121 1162 DAR-KAEEARKAEDAKKAEAARKAEEVrKAEELRKAEDARKAEAARKAEEERKAEEARKAE--DAKKAEAVKKAEEAKKD 1238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 732 VEQMKKCiqekdEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKEVQEL----KAKQMDQVPFVSLIEDLKKVIHE 807
Cdd:PTZ00121 1239 AEEAKKA-----EEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAeekkKADEAKKAEEKKKADEAKKKAEE 1313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 808 KDGQIKSVEELLEVELLKVANKEKTVQLSVTSQVQELQNLLRGKEEQVDSMKAALEDLTGRE----------KCTQVCST 877
Cdd:PTZ00121 1314 AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEakkkadaakkKAEEKKKA 1393
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 878 PRFEELENVLKEKDNEIKRIEAiLKDTKSDLSKKAELLKEVQDENKlfKSQVEQLNHQNHQQASFPSQEELQTVISEKEK 957
Cdd:PTZ00121 1394 DEAKKKAEEDKKKADELKKAAA-AKKKADEAKKKAEEKKKADEAKK--KAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK 1470
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 958 EITDLCNELESLKNAvEHQRKKNNDLREKNWEAMEALASTEKILQDRVNKTSKERQQQVEAVELESKDLLKRLfPAVSVP 1037
Cdd:PTZ00121 1471 KADEAKKKAEEAKKA-DEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKA-EEKKKA 1548
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 1038 SHSNYSEWLRSFEKKAKAcmagpsdTEAVKVLEHRLKEANEMHTLLQLECEKYKSVLAETEGILQ-KLQRSVEQEESKWK 1116
Cdd:PTZ00121 1549 DELKKAEELKKAEEKKKA-------EEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKmKAEEAKKAEEAKIK 1621
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 1117 V----KAEESRRTIQQMQSSFTASEQELERLRHEN------KAMENLRREREHLEIELEKAEVERSTYVMEVRELKTQLN 1186
Cdd:PTZ00121 1622 AeelkKAEEEKKKVEQLKKKEAEEKKKAEELKKAEeenkikAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEA 1701
|
650 660
....*....|....*....|....*
gi 1958681438 1187 ETHSKLQNEQTERKKVADDLHKAQQ 1211
Cdd:PTZ00121 1702 KKAEELKKKEAEEKKKAEELKKAEE 1726
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
680-1029 |
4.17e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.77 E-value: 4.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 680 KDDKIRLLEEQ--LQREVASRVEELKILNDQNKALQLEVQKLQAvvSEQPNKDVVEQMKKCIQEKDEKLRTVEELLETGL 757
Cdd:TIGR02169 687 KRELSSLQSELrrIENRLDELSQELSDASRKIGEIEKEIEQLEQ--EEEKLKERLEELEEDLSSLEQEIENVKSELKELE 764
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 758 IQVATREEELNAIRTENSSLTKEVQELKAKQMDQvpfvsLIEDLKKVIHEKDGQIKSVEELLevellkvaNKEKTVQLSV 837
Cdd:TIGR02169 765 ARIEELEEDLHKLEEALNDLEARLSHSRIPEIQA-----ELSKLEEEVSRIEARLREIEQKL--------NRLTLEKEYL 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 838 TSQVQELQNLLRGKEEQVDSMKAALEDLTGRekctqvcstprFEELENVLKEKDNEIKRIEAILKDTKSDLSKKAELLKE 917
Cdd:TIGR02169 832 EKEIQELQEQRIDLKEQIKSIEKEIENLNGK-----------KEELEEELEELEAALRDLESRLGDLKKERDELEAQLRE 900
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 918 VQDENKLFKSQVEQLNHQNHQQasfpsQEELQTViSEKEKEITDLCNELESLKNAVEHQRKKNNDLREKNwEAMEALAST 997
Cdd:TIGR02169 901 LERKIEELEAQIEKKRKRLSEL-----KAKLEAL-EEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVE-EEIRALEPV 973
|
330 340 350
....*....|....*....|....*....|....*
gi 1958681438 998 E-KILQD--RVNKTSKERQQQVEAVELESKDLLKR 1029
Cdd:TIGR02169 974 NmLAIQEyeEVLKRLDELKEKRAKLEEERKAILER 1008
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
310-1031 |
7.13e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 7.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 310 LKEKSGVIKEALKKSNKgELSGLLHQLQEKERLLTATKEDAAATKERCKQLTQEMMTEKER---SSVVMARMKERIGTLE 386
Cdd:TIGR02168 300 LEQQKQILRERLANLER-QLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEleeLEAELEELESRLEELE 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 387 KEHNIFQNKMHVSYQETQQMQMKfeqvREQMEAEIAHLKQENGILRdavSNTTNQLESKQSAELNKLRQDCGRLVSELNE 466
Cdd:TIGR02168 379 EQLETLRSKVAQLELQIASLNNE----IERLEARLERLEDRRERLQ---QEIEELLKKLEEAELKELQAELEELEEELEE 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 467 KTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSyirkRTAEHEAAQQDLQSKF--VAKENEVQSLHSKLTDTLVS 544
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAAERELAQLQA----RLDSLERLQENLEGFSegVKALLKNQSGLSGILGVLSE 527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 545 KQQLEQRLMQ-----LMESEQKRASQEESMQIQVQDILEQNEALKA-----------QIQQFHSQIAAQTSASVL----- 603
Cdd:TIGR02168 528 LISVDEGYEAaieaaLGGRLQAVVVENLNAAKKAIAFLKQNELGRVtflpldsikgtEIQGNDREILKNIEGFLGvakdl 607
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 604 ---AEELHKVI-------------AEKDKQLKQT--EDSLASEQDHLAS------------------KEQELKDvqnvnf 647
Cdd:TIGR02168 608 vkfDPKLRKALsyllggvlvvddlDNALELAKKLrpGYRIVTLDGDLVRpggvitggsaktnssileRRREIEE------ 681
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 648 lLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRLLEEQLQREVASRVEELKILNDQNKALQLEVQKLQAVVSEQP 727
Cdd:TIGR02168 682 -LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 728 NKDVVEQMKkcIQEKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKEVQELKAKQMDQVPFVSL----IEDLKK 803
Cdd:TIGR02168 761 AEIEELEER--LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESlerrIAATER 838
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 804 VIHEKDGQIKSVEELLEVELLKVANKEKTVQlSVTSQVQELQNLLRGKEEQVDSMKAALEDLTGREKCTQvcstPRFEEL 883
Cdd:TIGR02168 839 RLEDLEEQIEELSEDIESLAAEIEELEELIE-ELESELEALLNERASLEEALALLRSELEELSEELRELE----SKRSEL 913
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 884 ENVLKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQdenklfksQVEQLNHQNHQQASFPSQEELQTVISEKEKEITDLC 963
Cdd:TIGR02168 914 RRELEELREKLAQLELRLEGLEVRIDNLQERLSEEY--------SLTLEEAEALENKIEDDEEEARRRLKRLENKIKELG 985
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958681438 964 N-------ELESLKNAVEHQRKKNNDLReknweamEALASTEKILQDrVNKTSKER-QQQVEAVELESKDLLKRLF 1031
Cdd:TIGR02168 986 PvnlaaieEYEELKERYDFLTAQKEDLT-------EAKETLEEAIEE-IDREARERfKDTFDQVNENFQRVFPKLF 1053
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
688-1272 |
1.08e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.60 E-value: 1.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 688 EEQLQREVASRVEELKILNDQNKALQLEVQKLQAVVSEQPNK-DVVEQMKKCIQEKDEKLRTVEELLETGLIQVATR--- 763
Cdd:TIGR02168 255 LEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEiSRLEQQKQILRERLANLERQLEELEAQLEELESKlde 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 764 -EEELNAIRTENSSLTKEVQELKAK----QMDQVPFVSLIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQLSVT 838
Cdd:TIGR02168 335 lAEELAELEEKLEELKEELESLEAEleelEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLED 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 839 SQVQELQNLLRGKEEQVDSMKAALEDLTGREKCTQVCSTPRFEELENVLKEKDNEIKRIEAILKDTKSDLSK---KAELL 915
Cdd:TIGR02168 415 RRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQlqaRLDSL 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 916 KEVQDEN-KLFKSQVEQLNHQNHQQASFPSQEELQTVISEKEKEITD---------LCNELESLKNAVEHQrkKNNDLRE 985
Cdd:TIGR02168 495 ERLQENLeGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAalggrlqavVVENLNAAKKAIAFL--KQNELGR 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 986 KNWEAMEALASTEKILQDRVNKTSKERQQQVeAVELESKD---------LLKRLFPAVSVPSHSNYSEWLRSFEK----- 1051
Cdd:TIGR02168 573 VTFLPLDSIKGTEIQGNDREILKNIEGFLGV-AKDLVKFDpklrkalsyLLGGVLVVDDLDNALELAKKLRPGYRivtld 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 1052 ----KAKACMAGPSDTEAVKVLEHR--LKEANEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKVKAEESRRT 1125
Cdd:TIGR02168 652 gdlvRPGGVITGGSAKTNSSILERRreIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISAL 731
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 1126 IQQMQSSFTASEQELERLRHENKAMENLRREREHLEIELEKAEVERStyvmEVRELKTQLNETHSKLQNEQTERKKVADD 1205
Cdd:TIGR02168 732 RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELA----EAEAEIEELEAQIEQLKEELKALREALDE 807
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 1206 LHKAQQSLNFIHSKISLKAAGDTVVIENNDISPEMGSPEKETMS---VSLTQTVAHLQQLLQEVNQQLTK 1272
Cdd:TIGR02168 808 LRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSediESLAAEIEELEELIEELESELEA 877
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
328-900 |
1.64e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.10 E-value: 1.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 328 ELSGLLHQLQEKERLLTATKEDAAATKERCKQLTQEMMTEKERSsvvmARMKERIGTLEKEHnifqnkmhvsyQETQQMQ 407
Cdd:COG1196 268 ELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR----RELEERLEELEEEL-----------AELEEEL 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 408 MKFEQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQdcgrlvselnektgkLQQEGVQKKNAEQAAAQ 487
Cdd:COG1196 333 EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE---------------LEELAEELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 488 LKVQLQEAERRWEEvqsyIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQEE 567
Cdd:COG1196 398 LAAQLEELEEAEEA----LLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 568 SMQIQVQDILEQNEALKAQIQQFHSQIA--AQTSASVLAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQE-LKDVQN 644
Cdd:COG1196 474 LLEAALAELLEELAEAAARLLLLLEAEAdyEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAaLQNIVV 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 645 VNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRLLEEQLQREVASRVEELKIlndqnKALQLEVQKLQAVVS 724
Cdd:COG1196 554 EDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADA-----RYYVLGDTLLGRTLV 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 725 EQPNKDVVEQMKKCIQEKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKEVQELKAKQMDQvpfvsliEDLKKV 804
Cdd:COG1196 629 AARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELEL-------EEALLA 701
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 805 IHEKDGQIKSVEELLEVELLKVANKEKTVQLSVTSQVQELQNLLRGKEEQVDSMKAALEDLtgrekctqvcstprfEELE 884
Cdd:COG1196 702 EEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDL---------------EELE 766
|
570
....*....|....*.
gi 1958681438 885 NVLKEKDNEIKRIEAI 900
Cdd:COG1196 767 RELERLEREIEALGPV 782
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
603-1160 |
1.46e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 52.98 E-value: 1.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 603 LAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQ---ELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQ---KS 676
Cdd:PRK01156 188 LEEKLKSSNLELENIKKQIADDEKSHSITLKEIERlsiEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAEsdlSM 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 677 VHVKDDKIRLLEEQLQR-----EVASRVEELKILNDQNKALQLevqklqavvseqpnKDVVEQMKKCIQEKDEKLRTVEE 751
Cdd:PRK01156 268 ELEKNNYYKELEERHMKiindpVYKNRNYINDYFKYKNDIENK--------------KQILSNIDAEINKYHAIIKKLSV 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 752 LletgliqvATREEELNAIRTENSSLTKEVQELKAKQMDQVPFVSLIEDLKKVIHEKDGQIKSVEELLEVEL-------- 823
Cdd:PRK01156 334 L--------QKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILkiqeidpd 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 824 --LKVANKEKTVQLSVTSQVQELQNLLRGKEEQVDSMKAALEDLTGREKCTqVCSTPRFEE-LENVLKEKDNEIKRIEAI 900
Cdd:PRK01156 406 aiKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCP-VCGTTLGEEkSNHIINHYNEKKSRLEEK 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 901 LKDTKSDLSKKAELLKEVQD-ENKLFKSQVEQLNHQNHQQASFPSQeelQTVISEKEKEITDLCNELESLKNavEHQRKK 979
Cdd:PRK01156 485 IREIEIEVKDIDEKIVDLKKrKEYLESEEINKSINEYNKIESARAD---LEDIKIKINELKDKHDKYEEIKN--RYKSLK 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 980 NNDLREKNWEAMEALASTEKILQDRVNKTSKERQQQVEAVELESKDLLKRLFPAVSVPSHS--NYSEWLRSFEKKAKACM 1057
Cdd:PRK01156 560 LEDLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSirEIENEANNLNNKYNEIQ 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 1058 AGPSDTEAV-KVLEHRLKEANEMHTLLQLECEkYKSVLAETEGILQKLQRSVEQ---EESKWKVKAEESRRTIQQMQSSF 1133
Cdd:PRK01156 640 ENKILIEKLrGKIDNYKKQIAEIDSIIPDLKE-ITSRINDIEDNLKKSRKALDDakaNRARLESTIEILRTRINELSDRI 718
|
570 580
....*....|....*....|....*..
gi 1958681438 1134 TASEQELERLRHENKAMENLRREREHL 1160
Cdd:PRK01156 719 NDINETLESMKKIKKAIGDLKRLREAF 745
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
733-1000 |
1.88e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 52.24 E-value: 1.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 733 EQMKK--CIQEKDEKLRTVEELLETGLIQVATREEELNAIRTEN-SSLTKEVQELKAKQMDQVPFVSLIEDLKKVIhekd 809
Cdd:PRK05771 4 VRMKKvlIVTLKSYKDEVLEALHELGVVHIEDLKEELSNERLRKlRSLLTKLSEALDKLRSYLPKLNPLREEKKKV---- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 810 gQIKSVEELLEVELLKVANKEKTVqLSVTSQVQELQN---LLRGKEEQVDSMKA---ALEDLTGREKCTQVCSTPRFEEL 883
Cdd:PRK05771 80 -SVKSLEELIKDVEEELEKIEKEI-KELEEEISELENeikELEQEIERLEPWGNfdlDLSLLLGFKYVSVFVGTVPEDKL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 884 ENVLKEKDNEIKRIEAILKDT--------KSDLSKKAELLKEVQDENKlfksqveqlnhqnhqqaSFPSQEELQTVISEK 955
Cdd:PRK05771 158 EELKLESDVENVEYISTDKGYvyvvvvvlKELSDEVEEELKKLGFERL-----------------ELEEEGTPSELIREI 220
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958681438 956 EKEITDLCNELESLKNAVEHQRKKNNDL-----------REKNwEAMEALASTEKI 1000
Cdd:PRK05771 221 KEELEEIEKERESLLEELKELAKKYLEEllalyeyleieLERA-EALSKFLKTDKT 275
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
459-770 |
2.06e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 2.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 459 RLVS---ELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQsyirkrtAEHEAAQQDLQSKfvakENEVQSLH 535
Cdd:TIGR02169 640 RMVTlegELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLK-------RELSSLQSELRRI----ENRLDELS 708
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 536 SKLTDTLVSKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAAQTS---------ASVLAEE 606
Cdd:TIGR02169 709 QELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEdlhkleealNDLEARL 788
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 607 LHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQksvhvkdDKIRL 686
Cdd:TIGR02169 789 SHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI-------ENLNG 861
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 687 LEEQLQREVASRVEELKILNDQNKALQLEVQKLQAVVSEQPNKdvVEQMKKCIQEKDEKLRTVEELLETGLIQVATREEE 766
Cdd:TIGR02169 862 KKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERK--IEELEAQIEKKRKRLSELKAKLEALEEELSEIEDP 939
|
....
gi 1958681438 767 LNAI 770
Cdd:TIGR02169 940 KGED 943
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
670-974 |
2.21e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 51.85 E-value: 2.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 670 VEKMQKS--VHVKDDKIRLLEEQLqREVASRVEELKilndqnKALQL--EVQKLQAVVSEQPNKDVVEQMKKCIQEKDEK 745
Cdd:PRK05771 22 LEALHELgvVHIEDLKEELSNERL-RKLRSLLTKLS------EALDKlrSYLPKLNPLREEKKKVSVKSLEELIKDVEEE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 746 LRTVEElletgliQVATREEELNAIRTENSSLTKEVQELKakqmdqvPFVSLIEDLK-----KVIHEKDGQIKSVEELLE 820
Cdd:PRK05771 95 LEKIEK-------EIKELEEEISELENEIKELEQEIERLE-------PWGNFDLDLSlllgfKYVSVFVGTVPEDKLEEL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 821 VELLKVANKEKTVQLSVTSQVqelqnLLRGKEEQVDSMKAALEDLTGREKctqvcSTPRFEELENVLKEKDNEIKRIEAI 900
Cdd:PRK05771 161 KLESDVENVEYISTDKGYVYV-----VVVVLKELSDEVEEELKKLGFERL-----ELEEEGTPSELIREIKEELEEIEKE 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 901 LKDTKSDLSKKAELLKEvqdenklFKSQVEQLNHQNHQQASFPSqEELQT---------VISEKEKEITDLCNELESLKN 971
Cdd:PRK05771 231 RESLLEELKELAKKYLE-------ELLALYEYLEIELERAEALS-KFLKTdktfaiegwVPEDRVKKLKELIDKATGGSA 302
|
...
gi 1958681438 972 AVE 974
Cdd:PRK05771 303 YVE 305
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
351-805 |
2.80e-06 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 51.98 E-value: 2.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 351 AATKERCKQLTQEMmteKERSSVVMARMKERIGTLEKEHNiFQNKMHVSYQETQQMQmkfeQVREQMEAEIAHLKQENGI 430
Cdd:PRK10929 19 AATAPDEKQITQEL---EQAKAAKTPAQAEIVEALQSALN-WLEERKGSLERAKQYQ----QVIDNFPKLSAELRQQLNN 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 431 LRDAVSNttnqLESKQSAelNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRT 510
Cdd:PRK10929 91 ERDEPRS----VPPNMST--DALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 511 AEHEAAQQdlqSKFVAKENEVQSLHSKLtdtlvskQQLEqrLMQLmeSEQKRasQEES-MQIQVQDilEQNEALKAQIQQ 589
Cdd:PRK10929 165 TPNTPLAQ---AQLTALQAESAALKALV-------DELE--LAQL--SANNR--QELArLRSELAK--KRSQQLDAYLQA 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 590 FHSQIAAQ---------TSASVLAE---ELHKVIAE---KDKQLKQTEDSLASEQDHLASKE-QELKDVQNVNFLLKA-- 651
Cdd:PRK10929 227 LRNQLNSQrqreaeralESTELLAEqsgDLPKSIVAqfkINRELSQALNQQAQRMDLIASQQrQAASQTLQVRQALNTlr 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 652 -EVQKLQALAKEQAAAAHEVEK---MQKSvhvkddkirlleEQLQREVAS-RVEELK---ILNDQNKALQLEVQKLQAVV 723
Cdd:PRK10929 307 eQSQWLGVSNALGEALRAQVARlpeMPKP------------QQLDTEMAQlRVQRLRyedLLNKQPQLRQIRQADGQPLT 374
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 724 SEQpnkdvveqmkKCIQekDEKLRTVEELLETGLIQVATREEELNAIRTENSSLT---KEVQELKAKQMDQVPFVS---- 796
Cdd:PRK10929 375 AEQ----------NRIL--DAQLRTQRELLNSLLSGGDTLILELTKLKVANSQLEdalKEVNEATHRYLFWVADVSpisl 442
|
490
....*....|....
gi 1958681438 797 -----LIEDLKKVI 805
Cdd:PRK10929 443 sypleIAQDLRRLL 456
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
909-1213 |
3.26e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.86 E-value: 3.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 909 SKKAELLKEVQDENKLFKSQVEQLNHQNHQQasfpSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKK----NNDLR 984
Cdd:COG1196 209 AEKAERYRELKEELKELEAELLLLKLRELEA----ELEELEAELEELEAELEELEAELAELEAELEELRLEleelELELE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 985 EKNWEAMEALASTEKILQDRVNKTSKERQQQVEAVELESKdllkrlfpavsvpshsnysewLRSFEKKAKAcmagpsDTE 1064
Cdd:COG1196 285 EAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEE---------------------LAELEEELEE------LEE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 1065 AVKVLEHRLKEANEMHTLLQLECEKYKSVLAETEGILQKLQRSVE---QEESKWKVKAEESRRTIQQMQSSFTASEQELE 1141
Cdd:COG1196 338 ELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEelaEELLEALRAAAELAAQLEELEEAEEALLERLE 417
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958681438 1142 RLRHENKAMENLRREREHLEIELEKAEVERSTYVMEVRELKTQLNETHSKLQNEQTERKKVADDLHKAQQSL 1213
Cdd:COG1196 418 RLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA 489
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
301-1038 |
1.31e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 1.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 301 DEALCVVDLLKEK---SGVIKEALKKSNKGELSGLLHQLQEKERLLTATKEDAAATKERCKQLTQEMMTEKER----SSV 373
Cdd:TIGR02169 208 EKAERYQALLKEKreyEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKikdlGEE 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 374 VMARMKERIGTLEKEHNIFQNKMHVSYQETQQMQ---MKFEQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQsAEL 450
Cdd:TIGR02169 288 EQLRVKEKIGELEAEIASLERSIAEKERELEDAEerlAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELK-EEL 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 451 NKLRQDcgrlVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENE 530
Cdd:TIGR02169 367 EDLRAE----LEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEE 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 531 VQSLHSKLtdtlvskQQLEQRLMQL---MESEQKRASQEESMQIQVQDILEQNE----ALKAQIQQFHSQIAAQTSASVL 603
Cdd:TIGR02169 443 KEDKALEI-------KKQEWKLEQLaadLSKYEQELYDLKEEYDRVEKELSKLQrelaEAEAQARASEERVRGGRAVEEV 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 604 AEELHKVIAEKDKQLKQTEDSLASEQDHLASK-------EQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKS 676
Cdd:TIGR02169 516 LKASIQGVHGTVAQLGSVGERYATAIEVAAGNrlnnvvvEDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSE 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 677 VHVKDDKIRLLEEQLQRE-----------VASRVEELKILNDQNKALQLE---VQKLQAVV----SEQPNKDVVEQMKKC 738
Cdd:TIGR02169 596 DGVIGFAVDLVEFDPKYEpafkyvfgdtlVVEDIEAARRLMGKYRMVTLEgelFEKSGAMTggsrAPRGGILFSRSEPAE 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 739 IQEKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKEVQELKAKqmdqvpfvslIEDLKKVIHEKDGQIKSVEEL 818
Cdd:TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKE----------IEQLEQEEEKLKERLEELEED 745
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 819 LEVELLKVANKEktvqlsvtSQVQELQNLLRGKEEQVDSMKAALEDLTGREkctqvcSTPRFEELENVLKEKDNEIKRIE 898
Cdd:TIGR02169 746 LSSLEQEIENVK--------SELKELEARIEELEEDLHKLEEALNDLEARL------SHSRIPEIQAELSKLEEEVSRIE 811
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 899 AILKDTKSDLSKKAELLKEVQDENKLFKSQVEQLNHQ-----NHQQASFPSQEELQTVISEKEKEITDLCNELESLKNAV 973
Cdd:TIGR02169 812 ARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQiksieKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKER 891
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958681438 974 EHQRKKNNDLREKNWEAMEALastekilqDRVNKTSKERQQQVEAVELESKDLLKRLFPAVSVPS 1038
Cdd:TIGR02169 892 DELEAQLRELERKIEELEAQI--------EKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPE 948
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
444-644 |
1.51e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 1.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 444 SKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDL--Q 521
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELeaQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 522 SKFVAKENEVQSLHSKLTDTLV-----SKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAA 596
Cdd:COG4942 103 KEELAELLRALYRLGRQPPLALllspeDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAE 182
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1958681438 597 QTSAsvlAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQN 644
Cdd:COG4942 183 LEEE---RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
308-808 |
2.38e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.86 E-value: 2.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 308 DLLKEKSGVIKEALKKSNKgeLSGLLHQLQEKERLLTATKedaaATKERCKQLTQEMMTEKERSSVvmarMKERIGTLEK 387
Cdd:TIGR04523 170 ELENELNLLEKEKLNIQKN--IDKIKNKLLKLELLLSNLK----KKIQKNKSLESQISELKKQNNQ----LKDNIEKKQQ 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 388 EHNIFQNKMHVSYQETQQMQMKFEQVREQMEAEIAHLKQENGILRDaVSNTTNQLESKQSAELNKLRQDCGRLV-SELNE 466
Cdd:TIGR04523 240 EINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKE-LEKQLNQLKSEISDLNNQKEQDWNKELkSELKN 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 467 KTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKfvakENEVQSLHSKLTDTLVSKQ 546
Cdd:TIGR04523 319 QEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKL----KKENQSYKQEIKNLESQIN 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 547 QLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIA----AQTSASVLAEELHKVIAEKDKQLKQTE 622
Cdd:TIGR04523 395 DLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKdltnQDSVKELIIKNLDNTRESLETQLKVLS 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 623 DSLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKeqaaaahEVEKMQKSVHVKDDKIRLLEEQLQREVASRVEEL 702
Cdd:TIGR04523 475 RSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVK-------DLTKKISSLKEKIEKLESEKKEKESKISDLEDEL 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 703 KILNDQNKALQLE--VQKLQAVVSEQPN-----KDVVEQMKKCIQEKDEKLRTVEELLETGLIQVATREEELNAIRTENS 775
Cdd:TIGR04523 548 NKDDFELKKENLEkeIDEKNKEIEELKQtqkslKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENE 627
|
490 500 510
....*....|....*....|....*....|...
gi 1958681438 776 SLTKEVQELKAKQMDQVPFVSLIEDLKKVIHEK 808
Cdd:TIGR04523 628 KLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNK 660
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
418-996 |
2.96e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.52 E-value: 2.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 418 EAEIAHLKQENGILRDAVSNTTNQLESKQ---SAELNKLRqdcgRLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQE 494
Cdd:PRK03918 188 TENIEELIKEKEKELEEVLREINEISSELpelREELEKLE----KEVKELEELKEEIEELEKELESLEGSKRKLEEKIRE 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 495 AERRWEEVqsyiRKRTAEHEAAQQDLQS-KFVAKE-NEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQEESMQIQ 572
Cdd:PRK03918 264 LEERIEEL----KKEIEELEEKVKELKElKEKAEEyIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEER 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 573 VQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKViaeKDKQLKQTEDSLASEQDHLASKEQELKDVQNVnflLKAE 652
Cdd:PRK03918 340 LEELKKKLKELEKRLEELEERHELYEEAKAKKEELERL---KKRLTGLTPEKLEKELEELEKAKEEIEEEISK---ITAR 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 653 VQKLQALAKEQAAAAHEVEKMQKSVHV------KDDKIRLLEEQLqREVASRVEELKILNDQNKALQLEVQKLQAVVSEQ 726
Cdd:PRK03918 414 IGELKKEIKELKKAIEELKKAKGKCPVcgreltEEHRKELLEEYT-AELKRIEKELKEIEEKERKLRKELRELEKVLKKE 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 727 PNKDVVEQMKKCIQEKDEKLRTVE-ELLETGLIQVATREEELNAIRTENSSLTKEVQELKAkqmdqvpfvsLIEDLKKVI 805
Cdd:PRK03918 493 SELIKLKELAEQLKELEEKLKKYNlEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE----------LKKKLAELE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 806 HEkdgqIKSVEELLEVELLKVANKEKTVQLSVTSQVQELQNLLRGKEEQVDSmKAALEDLTGREKCTQVCSTPRFEELEN 885
Cdd:PRK03918 563 KK----LDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDA-EKELEREEKELKKLEEELDKAFEELAE 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 886 VLKEKDNEIKRIEAILKD-TKSDLSKKAELLKEVQDENKLFKSQVEQLNHQNHQ-QASFPSQEELQTVISEKEKEITDLC 963
Cdd:PRK03918 638 TEKRLEELRKELEELEKKySEEEYEELREEYLELSRELAGLRAELEELEKRREEiKKTLEKLKEELEEREKAKKELEKLE 717
|
570 580 590
....*....|....*....|....*....|...
gi 1958681438 964 NELESLKNAVEHQRKKNNDLREKNWEAMEALAS 996
Cdd:PRK03918 718 KALERVEELREKVKKYKALLKERALSKVGEIAS 750
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
584-1003 |
3.50e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.50 E-value: 3.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 584 KAQIQQFHSQIAAQT-SASVLAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKE 662
Cdd:TIGR00606 690 EAELQEFISDLQSKLrLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEE 769
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 663 QAAAAHEVEKMQKSVHVKDDKIRLLEeQLQREvasrveelkiLNDQNKALQLEVQKLQAVVSEQpnkdVVEQMKKCIQEK 742
Cdd:TIGR00606 770 QETLLGTIMPEEESAKVCLTDVTIME-RFQME----------LKDVERKIAQQAAKLQGSDLDR----TVQQVNQEKQEK 834
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 743 DEKLRTVEELLE------------------------TGLIQVATREEELNAIRTENSSLTKEVQELKAKQMDQVPFVSLI 798
Cdd:TIGR00606 835 QHELDTVVSKIElnrkliqdqqeqiqhlksktnelkSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPL 914
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 799 ED-LKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQ------LSVTSQVQE-LQNLLRGKEEQVDSMKAALEDLTGREK 870
Cdd:TIGR00606 915 ETfLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKnihgymKDIENKIQDgKDDYLKQKETELNTVNAQLEECEKHQE 994
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 871 ctqvcstpRFEELENVLKEKDNEIKRIEAILKDTKSdLSKKAELLKEVQDENKLFKSQVEQLNHQNHQQASFPSQEELQT 950
Cdd:TIGR00606 995 --------KINEDMRLMRQDIDTQKIQERWLQDNLT-LRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDL 1065
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 1958681438 951 VISEKEKEITDLCNELESLKNAVEHQRKKN-NDLREKNWEAMEALASTEKILQD 1003
Cdd:TIGR00606 1066 IKRNHVLALGRQKGYEKEIKHFKKELREPQfRDAEEKYREMMIVMRTTELVNKD 1119
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
473-1173 |
3.95e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.21 E-value: 3.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 473 QEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRL 552
Cdd:PTZ00121 1182 RKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEAR 1261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 553 MQLMESEQKRASQEESMQiqVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEElhkviAEKDKQLKQTEDSLASEQDHL 632
Cdd:PTZ00121 1262 MAHFARRQAAIKAEEARK--ADELKKAEEKKKADEAKKAEEKKKADEAKKKAEE-----AKKADEAKKKAEEAKKKADAA 1334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 633 ASKEQELKDvqnvnfllKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRLLEEQLQREVASRVEELKILNDQNKAL 712
Cdd:PTZ00121 1335 KKKAEEAKK--------AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKK 1406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 713 QLEVQKLQAvvseqpNKDVVEQMKKciqeKDEKLRTVEELLETGliQVATREEELNAIRTEnsslTKEVQELKAKQMDQv 792
Cdd:PTZ00121 1407 ADELKKAAA------AKKKADEAKK----KAEEKKKADEAKKKA--EEAKKADEAKKKAEE----AKKAEEAKKKAEEA- 1469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 793 pfvSLIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQLSVTSQVQELQNLLRGKEEQVDSMKAALEDLTGREKCT 872
Cdd:PTZ00121 1470 ---KKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKK 1546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 873 QVCSTPRFEELENVLKEKDNEIKRIEailKDTKSDLSKKAELLKEVqdENKLFKSQVEQLNHQNHQQASFPSQEELQTVI 952
Cdd:PTZ00121 1547 KADELKKAEELKKAEEKKKAEEAKKA---EEDKNMALRKAEEAKKA--EEARIEEVMKLYEEEKKMKAEEAKKAEEAKIK 1621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 953 SEKEKEITDLCNELESLKNAVEHQRKKNNDLREKNWEamealastEKILQDRVNKTSKERQQQVEAVELESKDllkrlfp 1032
Cdd:PTZ00121 1622 AEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEE--------NKIKAAEEAKKAEEDKKKAEEAKKAEED------- 1686
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 1033 avsvpshsnysewlrsfeKKAKACMAGPSDTEAVKVLEHRLKEANEMHtllqlECEKYKSVLAETEGILQKLQRSVEQEe 1112
Cdd:PTZ00121 1687 ------------------EKKAAEALKKEAEEAKKAEELKKKEAEEKK-----KAEELKKAEEENKIKAEEAKKEAEED- 1742
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958681438 1113 skwKVKAEESRRTIQQMQSSFTASEQELERLRHENKAMENLRREREHLEIELEKAEVERST 1173
Cdd:PTZ00121 1743 ---KKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKI 1800
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
605-959 |
8.83e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.98 E-value: 8.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 605 EELHKVIAEKDKQLK--QTEDSLASEQDHLASKEQELKDVQNVNFLLKAEVQKlQALAKEQAAAAHEVEKMQKSVHVKDD 682
Cdd:TIGR02169 187 ERLDLIIDEKRQQLErlRREREKAERYQALLKEKREYEGYELLKEKEALERQK-EAIERQLASLEEELEKLTEEISELEK 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 683 KIRLLEEQLqREVASRVEEL---KILNDQNKALQLEVQKLQAVVSEQPNKDVVEQMkkciqekDEKLRTVEELLETGLIQ 759
Cdd:TIGR02169 266 RLEEIEQLL-EELNKKIKDLgeeEQLRVKEKIGELEAEIASLERSIAEKERELEDA-------EERLAKLEAEIDKLLAE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 760 VATREEELNAIRTENSSLTKEVQELKAKQMDqvpFVSLIEDLkkvihEKDGQIKSVEELLEVELLKVANKEKTvqlSVTS 839
Cdd:TIGR02169 338 IEELEREIEEERKRRDKLTEEYAELKEELED---LRAELEEV-----DKEFAETRDELKDYREKLEKLKREIN---ELKR 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 840 QVQELQNLLRGKEEQVDSMKAALEDLTGREKctqvcstprfeELENVLKEKDNEIKRIEAILKDTKSDLSK-------KA 912
Cdd:TIGR02169 407 ELDRLQEELQRLSEELADLNAAIAGIEAKIN-----------ELEEEKEDKALEIKKQEWKLEQLAADLSKyeqelydLK 475
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 1958681438 913 ELLKEVQDENKLFKSQVEQLNHQnhQQASFPSQEELQTVISEKEKEI 959
Cdd:TIGR02169 476 EEYDRVEKELSKLQRELAEAEAQ--ARASEERVRGGRAVEEVLKASI 520
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
879-1193 |
1.01e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.97 E-value: 1.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 879 RFEELENVLKEKDNEIKRIEAILKDTKSDL------SKKAELLKEVQDENK---------LFKSQVEQLNHQNHQQASFP 943
Cdd:TIGR02168 173 RRKETERKLERTRENLDRLEDILNELERQLkslerqAEKAERYKELKAELRelelallvlRLEELREELEELQEELKEAE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 944 SQ-EELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLreknweamealasteKILQDRVNKTSKERQQQVEAVELE 1022
Cdd:TIGR02168 253 EElEELTAELQELEEKLEELRLEVSELEEEIEELQKELYAL---------------ANEISRLEQQKQILRERLANLERQ 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 1023 SKDLLKRLfpavsvpshsnySEWLRSFEKKAkacmagpsdtEAVKVLEHRLKEANEMHTLLQLECEKYKSVLAETEGILQ 1102
Cdd:TIGR02168 318 LEELEAQL------------EELESKLDELA----------EELAELEEKLEELKEELESLEAELEELEAELEELESRLE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 1103 KLQRSVEQEESKW---KVKAEESRRTIQQMQSSFTASEQELERLRHENKA---------MENLRREREHLEIELEKAEVE 1170
Cdd:TIGR02168 376 ELEEQLETLRSKVaqlELQIASLNNEIERLEARLERLEDRRERLQQEIEEllkkleeaeLKELQAELEELEEELEELQEE 455
|
330 340
....*....|....*....|...
gi 1958681438 1171 RSTYVMEVRELKTQLNETHSKLQ 1193
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQALD 478
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
479-639 |
1.02e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.87 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 479 KNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSkfvakENEVQSLHSkltdtlvskqQLEQRLMQLmeS 558
Cdd:COG3096 508 QALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDA-----AEELEELLA----------ELEAQLEEL--E 570
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 559 EQKRASQEESMQIQvqdilEQNEALKAQIQQFHSQ----IAAQTSASVLAEELHKVIA-------------EKDKQLKQT 621
Cdd:COG3096 571 EQAAEAVEQRSELR-----QQLEQLRARIKELAARapawLAAQDALERLREQSGEALAdsqevtaamqqllEREREATVE 645
|
170
....*....|....*...
gi 1958681438 622 EDSLASEQDHLASKEQEL 639
Cdd:COG3096 646 RDELAARKQALESQIERL 663
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
710-1020 |
1.35e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 1.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 710 KALQLEVQKLQAVVSEqpnkdVVEQMKKCIQEKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKEVQELKAKQM 789
Cdd:TIGR02169 180 EEVEENIERLDLIIDE-----KRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 790 DqvpFVSLIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQLSVTSQV--------------QELQNLLRGKEEQV 855
Cdd:TIGR02169 255 K---LTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIaslersiaekerelEDAEERLAKLEAEI 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 856 DSMKAALEDLTGREKCTQVCSTP---RFEELENVLKEKDNEIKRIE---AILKDTKSDLSKKAELLKEVQDENKLFKSQV 929
Cdd:TIGR02169 332 DKLLAEIEELEREIEEERKRRDKlteEYAELKEELEDLRAELEEVDkefAETRDELKDYREKLEKLKREINELKRELDRL 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 930 EQLNHQNHQQASFPSQE---------ELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLREKnweamealasteki 1000
Cdd:TIGR02169 412 QEELQRLSEELADLNAAiagieakinELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEE-------------- 477
|
330 340
....*....|....*....|
gi 1958681438 1001 lQDRVNKTSKERQQQVEAVE 1020
Cdd:TIGR02169 478 -YDRVEKELSKLQRELAEAE 496
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
399-602 |
1.65e-04 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 45.13 E-value: 1.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 399 SYQETQQMQMKFEQVREQMEAEIAHLKQENGiLRDAVSNTTNQLESKQS--------AELNKLRQDCGRLVSELNEKTGK 470
Cdd:pfam09787 5 AKQELADYKQKAARILQSKEKLIASLKEGSG-VEGLDSSTALTLELEELrqerdllrEEIQKLRGQIQQLRTELQELEAQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 471 LQQEGVQkknAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDL-------QSKFVAKENEVQSLHSKLTD--- 540
Cdd:pfam09787 84 QQEEAES---SREQLQELEEQLATERSARREAEAELERLQEELRYLEEELrrskatlQSRIKDREAEIEKLRNQLTSksq 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958681438 541 TLVSKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAAQTSASV 602
Cdd:pfam09787 161 SSSSQSELENRLHQLTETLIQKQTMLEALSTEKNSLVLQLERMEQQIKELQGEGSNGTSINM 222
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
410-1266 |
1.80e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.21 E-value: 1.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 410 FEQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQDcgRLVSELNEKTGKLQQEgvQKKNAEQAAAQLK 489
Cdd:TIGR02169 168 FDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQ--ALLKEKREYEGYELLK--EKEALERQKEAIE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 490 VQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQskfvakenevqslhskltdtlvskqQLEQRLMQLMESEQKR------- 562
Cdd:TIGR02169 244 RQLASLEEELEKLTEEISELEKRLEEIEQLLE-------------------------ELNKKIKDLGEEEQLRvkekige 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 563 -ASQEESMQIQVQDILEQNEALKAQIQQFHSQIAAQTSAsvlAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKD 641
Cdd:TIGR02169 299 lEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAE---IEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 642 VQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRLLEEQLQREVASRVEELKILNDQNKALQLEVQKLQA 721
Cdd:TIGR02169 376 VDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 722 VVSEqpNKDVVEQMKKCIQEKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKEVQELKA---------KQMDQV 792
Cdd:TIGR02169 456 KLEQ--LAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKAsiqgvhgtvAQLGSV 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 793 --PFVSLIE-----DLKKVIHEKDGQIKSVEELLEVELL---------KVANKEKTVQLSVTSQVQE-LQNLLRGKEEQV 855
Cdd:TIGR02169 534 geRYATAIEvaagnRLNNVVVEDDAVAKEAIELLKRRKAgratflplnKMRDERRDLSILSEDGVIGfAVDLVEFDPKYE 613
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 856 DSMKAALEDL-------TGREKCTQVcstpRFEELENVLKEKDNEI----KRIEAILKDTKSDLSKKAELLKEVQDENKL 924
Cdd:TIGR02169 614 PAFKYVFGDTlvvedieAARRLMGKY----RMVTLEGELFEKSGAMtggsRAPRGGILFSRSEPAELQRLRERLEGLKRE 689
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 925 FKSQVEQLNHQnhQQASFpsqeELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLREKNWEAMEALASTEKILQDr 1004
Cdd:TIGR02169 690 LSSLQSELRRI--ENRLD----ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKE- 762
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 1005 VNKTSKERQQQVEAVELESKDLLKRLfpavsvpshsnysewlrsfekkakacmagpsdteavkvLEHRLKEANEMHTLLQ 1084
Cdd:TIGR02169 763 LEARIEELEEDLHKLEEALNDLEARL--------------------------------------SHSRIPEIQAELSKLE 804
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 1085 LECEKYKSVLAETEGILQKLQRSVEQeeskwkvkAEESRRTIQQMQSSFTASEQELErlrhenKAMENLRREREHLEIEL 1164
Cdd:TIGR02169 805 EEVSRIEARLREIEQKLNRLTLEKEY--------LEKEIQELQEQRIDLKEQIKSIE------KEIENLNGKKEELEEEL 870
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 1165 EKAEVERSTYVMEVRELKTQLNETHSKLQNEQTERKKVADDLHKAQQSLNfihskiSLKAAGDTVVIENNDISPEMGSPE 1244
Cdd:TIGR02169 871 EELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLS------ELKAKLEALEEELSEIEDPKGEDE 944
|
890 900
....*....|....*....|...
gi 1958681438 1245 KETMSV-SLTQTVAHLQQLLQEV 1266
Cdd:TIGR02169 945 EIPEEElSLEDVQAELQRVEEEI 967
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
310-632 |
1.83e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.21 E-value: 1.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 310 LKEKSGVI---------KEALKKSNKGELSGLLHQLQEKERLLTATKEDAAATKERCKQLTQEMMTEKERSSVVMARMKE 380
Cdd:TIGR02169 648 LFEKSGAMtggsraprgGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQ 727
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 381 rigtLEKEHNIFQNKMHVSYQETQQMQMKFEQVR----------EQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAEL 450
Cdd:TIGR02169 728 ----LEQEEEKLKERLEELEEDLSSLEQEIENVKselkeleariEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKL 803
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 451 NKLRQDCGRLVSELNEKTGKLQQEG------------------VQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAE 512
Cdd:TIGR02169 804 EEEVSRIEARLREIEQKLNRLTLEKeylekeiqelqeqridlkEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESR 883
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 513 HEaaqqDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEA------LKAQ 586
Cdd:TIGR02169 884 LG----DLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEelsledVQAE 959
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1958681438 587 IQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLASEQDHL 632
Cdd:TIGR02169 960 LQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAI 1005
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
470-755 |
2.28e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 45.66 E-value: 2.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 470 KLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLhsKLTDTLVSKQQLE 549
Cdd:PLN02939 64 KLQSNTDENGQLENTSLRTVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDF--QLEDLVGMIQNAE 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 550 QRLMQLmesEQKRASQEEsmqiQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSL---- 625
Cdd:PLN02939 142 KNILLL---NQARLQALE----DLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELlirg 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 626 ASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRLLEEQLqreVASRVEELKIL 705
Cdd:PLN02939 215 ATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKF---IVAQEDVSKLS 291
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1958681438 706 NDQNKALQLEVQKLQAVVSEQPNKdvVEQMKKCIQEKDEKLRTVEELLET 755
Cdd:PLN02939 292 PLQYDCWWEKVENLQDLLDRATNQ--VEKAALVLDQNQDLRDKVDKLEAS 339
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
413-590 |
3.74e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.01 E-value: 3.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 413 VREQMEAEIAHLKQENGILRDAVSNTTNQLESKQsAELNKLRQDCGrlVSELNEKTGKLQQegvQKKNAEQAAAQLKVQL 492
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAE-AALEEFRQKNG--LVDLSEEAKLLLQ---QLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 493 QEAERRWEEVQSYI-------------------RKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLM 553
Cdd:COG3206 236 AEAEARLAALRAQLgsgpdalpellqspviqqlRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRIL 315
|
170 180 190
....*....|....*....|....*....|....*..
gi 1958681438 554 QLMESEQkrasqeESMQIQVQDILEQNEALKAQIQQF 590
Cdd:COG3206 316 ASLEAEL------EALQAREASLQAQLAQLEARLAEL 346
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
477-686 |
6.00e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 6.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 477 QKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQ---DLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLM 553
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERriaALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 554 QLME--SEQKRASQEESMQIQVQDILEQ----------------NEALKAQIQQFHSQIAA----QTSASVLAEELHKVI 611
Cdd:COG4942 101 AQKEelAELLRALYRLGRQPPLALLLSPedfldavrrlqylkylAPARREQAEELRADLAElaalRAELEAERAELEALL 180
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958681438 612 AEKDKQLKQTEDSLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRL 686
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGKL 255
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
332-1028 |
6.08e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.19 E-value: 6.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 332 LLHQLQEKERLLTATKEDAAATKERCKQLTQEMMTEKERSSVVMARMKERIGTLEKEhnifqnKMHVSYQETQQMQMKFE 411
Cdd:pfam02463 228 YLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQ------EEELKLLAKEEEELKSE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 412 QVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAAQLK-- 489
Cdd:pfam02463 302 LLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKkl 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 490 --VQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQEE 567
Cdd:pfam02463 382 esERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLL 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 568 SMqiQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQNVnf 647
Cdd:pfam02463 462 KD--ELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVA-- 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 648 LLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRLLEEQLQREVASRVEELKILNDQNKALQLEVQKLQAVVSEQP 727
Cdd:pfam02463 538 VENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADE 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 728 -NKDVVEQMKKCIQEKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKEVQELKAKQMDQVPFVSLIEDLKKVIH 806
Cdd:pfam02463 618 dDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRR 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 807 EKdgQIKSVEELLEVELLKVANKEKTVQLSVTSQVQELQNLLRGKEEQVDSMKAALEDLTGREKCTQVCSTPRFEELENV 886
Cdd:pfam02463 698 QL--EIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKE 775
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 887 LKEKDNEIKR---IEAILKDTKSDLSKKAELLKEVQDENKLFKSQVEQLNHQNHQQASFPSQEELQTVISEKEKEITDLC 963
Cdd:pfam02463 776 LAEEREKTEKlkvEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEE 855
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958681438 964 NELESLKNAVEHQRKKNNDLREKNWEAMEALASTEKILQDRVNKTSKERQQQVEAVELESKDLLK 1028
Cdd:pfam02463 856 LERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIE 920
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
393-1125 |
6.35e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.34 E-value: 6.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 393 QNKMHVSYQetqQMQMKFEQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKlRQDCGRLVSELnektgklq 472
Cdd:pfam15921 255 QNKIELLLQ---QHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQ-NSMYMRQLSDL-------- 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 473 qegvqkknaEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRL 552
Cdd:pfam15921 323 ---------ESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKEL 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 553 MQLMESEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAAQTSasvlaeelhkviaEKDKQLKQTEDSLASEQDHL 632
Cdd:pfam15921 394 SLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKS-------------ECQGQMERQMAAIQGKNESL 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 633 ASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRLLEEQ---LQREVASRVEELKILNDQN 709
Cdd:pfam15921 461 EKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEitkLRSRVDLKLQELQHLKNEG 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 710 KALQLEVQKLQAVVSEQPNKD-VVEQMKKCIQEKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKEVQELKAKQ 788
Cdd:pfam15921 541 DHLRNVQTECEALKLQMAEKDkVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKI 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 789 MDQVPFVSLIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQLSVTSQVQELQNLLRGKEEQVDSMKAALEDLTGR 868
Cdd:pfam15921 621 RELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQ 700
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 869 EKCTQvcstPRFEELENVLKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQDENKLFKSQVEQLNHQNH--QQASFPSQE 946
Cdd:pfam15921 701 LKSAQ----SELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHflKEEKNKLSQ 776
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 947 ELQTVISEKEKeitdLCNELESLKNAVEHQRKKNNDLREKNWEAMEALASTEKILQDRVNKTSKER-QQQVEAVELE--- 1022
Cdd:pfam15921 777 ELSTVATEKNK----MAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKlQHTLDVKELQgpg 852
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 1023 ---SKDLLKRLF-PAVSVPSHSNYsewlrsfekkakacmagPSDTEAVKVLEHRLKEANEMHtllqlecekyKSVLAETE 1098
Cdd:pfam15921 853 ytsNSSMKPRLLqPASFTRTHSNV-----------------PSSQSTASFLSHHSRKTNALK----------EDPTRDLK 905
|
730 740
....*....|....*....|....*..
gi 1958681438 1099 GILQKLQRSVEQEESKWKVKAEESRRT 1125
Cdd:pfam15921 906 QLLQELRSVINEEPTVQLSKAEDKGRA 932
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
840-1212 |
6.58e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 6.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 840 QVQELQNLLRGKEEQVDSMKAALEDLTGREKctqvcstpRFEELENVLKEKDNEIKRIEAILK--DTKSDLSKKAELLKE 917
Cdd:COG4717 72 ELKELEEELKEAEEKEEEYAELQEELEELEE--------ELEELEAELEELREELEKLEKLLQllPLYQELEALEAELAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 918 VQDENKLFKSQVEQLNHQNHQQasfpsqEELQTVISEKEKEITDLCNEL-ESLKNAVEHQRKKNNDLREKNWEAMEALAS 996
Cdd:COG4717 144 LPERLEELEERLEELRELEEEL------EELEAELAELQEELEELLEQLsLATEEELQDLAEELEELQQRLAELEEELEE 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 997 TEKILQDRVNKTSKERQQQVEAVELESKDLLKRLFPAVSV------PSHSNYSE----------------WLRSFEKKAK 1054
Cdd:COG4717 218 AQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAAllallgLGGSLLSLiltiagvlflvlgllaLLFLLLAREK 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 1055 ACMAGPSDTEAVKVLEHRLKEANEMHTLLQLECEKYKSV-----LAETEGILQKLQRSVEQEESKWKVKAEESRRTiQQM 1129
Cdd:COG4717 298 ASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPeelleLLDRIEELQELLREAEELEEELQLEELEQEIA-ALL 376
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 1130 QSSFTASEQELERLRHENKAMENLRREREHLEIELEKAEVERSTYVM---------EVRELKTQLNETHSKLQNEQTERK 1200
Cdd:COG4717 377 AEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEaldeeeleeELEELEEELEELEEELEELREELA 456
|
410
....*....|..
gi 1958681438 1201 KVADDLHKAQQS 1212
Cdd:COG4717 457 ELEAELEQLEED 468
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
386-1236 |
6.97e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 44.27 E-value: 6.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 386 EKEHNIFQNKMHVSYQET-QQMQMKFEQVREQMEAEIAHLKQENGI---LRDAVSNTTNQLESKQ------SAELNKLRQ 455
Cdd:TIGR00606 173 QKFDEIFSATRYIKALETlRQVRQTQGQKVQEHQMELKYLKQYKEKaceIRDQITSKEAQLESSReivksyENELDPLKN 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 456 DCGRlVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQE--------AERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAK 527
Cdd:TIGR00606 253 RLKE-IEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELkmekvfqgTDEQLNDLYHNHQRTVREKERELVDCQRELEKL 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 528 ENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQEESMQIQVQ-DILEQNEALKAQIQQFHSQIAAQTS-----AS 601
Cdd:TIGR00606 332 NKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLElDGFERGPFSERQIKNFHTLVIERQEdeaktAA 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 602 VLAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHvKD 681
Cdd:TIGR00606 412 QLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELS-KA 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 682 DKIRLLEEQLQREVASRVEELKILndqnKALQLEVQKLQAVVSEQPNKDVVEQMKKCIQEKDEKLRTVEELLETGLIQVA 761
Cdd:TIGR00606 491 EKNSLTETLKKEVKSLQNEKADLD----RKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLL 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 762 TREEELNAIRTENSSLTKEVQELKAKQMDQVPFVSLIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEktvqlSVTSQV 841
Cdd:TIGR00606 567 GYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQ-----DEESDL 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 842 QELQNLLRGKEEQVDSMKAA-------LEDLTGREK-CTQVCST--PRFEELENVLKEKDNEIKRIEAILKDTKSDLSKK 911
Cdd:TIGR00606 642 ERLKEEIEKSSKQRAMLAGAtavysqfITQLTDENQsCCPVCQRvfQTEAELQEFISDLQSKLRLAPDKLKSTESELKKK 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 912 aellkEVQDENKLFKSQVEQlnhqnhqqasfpsqeelqTVISEKEKEITDLCNELESLKNavEHQRKKNNdlREKNWEAM 991
Cdd:TIGR00606 722 -----EKRRDEMLGLAPGRQ------------------SIIDLKEKEIPELRNKLQKVNR--DIQRLKND--IEEQETLL 774
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 992 EALASTEKILQDRVNKTSKERQQQVEAVELESKdLLKRLFPAVSVPSHSNYSEWLRSFEKKAKACMAGPSDTEAVKVLeh 1071
Cdd:TIGR00606 775 GTIMPEEESAKVCLTDVTIMERFQMELKDVERK-IAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKL-- 851
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 1072 rLKEANEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKvKAEESRRTIQQMQSSFTASEQELERLRHENKAME 1151
Cdd:TIGR00606 852 -IQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELST-EVQSLIREIKDAKEQDSPLETFLEKDQQEKEELI 929
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 1152 NLRRERE---HLEIELEKAEVERSTYVME-------------VRELKTQLNETHSKLQNEQTERKKVADDLHKAQQSLNF 1215
Cdd:TIGR00606 930 SSKETSNkkaQDKVNDIKEKVKNIHGYMKdienkiqdgkddyLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDT 1009
|
890 900
....*....|....*....|.
gi 1958681438 1216 IHSKISLKAAGDTVVIENNDI 1236
Cdd:TIGR00606 1010 QKIQERWLQDNLTLRKRENEL 1030
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
414-655 |
7.94e-04 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 44.05 E-value: 7.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 414 REQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNK--------LRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAA 485
Cdd:NF012221 1564 KERAEADRQRLEQEKQQQLAAISGSQSQLESTDQNALETngqaqrdaILEESRAVTKELTTLAQGLDALDSQATYAGESG 1643
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 486 AQLKVQLqeAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKlTDTLVskQQLEQRLMQLMESEQKRASQ 565
Cdd:NF012221 1644 DQWRNPF--AGGLLDRVQEQLDDAKKISGKQLADAKQRHVDNQQKVKDAVAK-SEAGV--AQGEQNQANAEQDIDDAKAD 1718
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 566 EESMQIQVqdILEQNEALKAQIQQFHS----QIAAQTSASVLAEELHKVIAEKdKQLKQTEDSLASEQ----DHLASKEQ 637
Cdd:NF012221 1719 AEKRKDDA--LAKQNEAQQAESDANAAandaQSRGEQDASAAENKANQAQADA-KGAKQDESDKPNRQgaagSGLSGKAY 1795
|
250
....*....|....*...
gi 1958681438 638 ELKDVQNVNFLLKAEVQK 655
Cdd:NF012221 1796 SVEGVAEPGSHINPDSPA 1813
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
437-726 |
8.32e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.57 E-value: 8.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 437 NTTNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQ---EAERRWEEVQSYIRKRtaEH 513
Cdd:pfam17380 285 SERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERmamERERELERIRQEERKR--EL 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 514 EAAQQDLQSKFVAKENEVQSLHskltdtlVSKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQiQQFHSQ 593
Cdd:pfam17380 363 ERIRQEEIAMEISRMRELERLQ-------MERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAE-QEEARQ 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 594 IAAQTSASVLAEELHKVIAEKDKQLKQTEDSLASEQDHLASK--------EQELKDVQNVNFL---LKAEVQKLQALAKE 662
Cdd:pfam17380 435 REVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKlelekekrDRKRAEEQRRKILekeLEERKQAMIEEERK 514
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958681438 663 QAAAAHEVEKMQKSVHvKDDKIRLLEEQLQREVasRVEELKILNDQNKALQLEVQKLQAVVSEQ 726
Cdd:pfam17380 515 RKLLEKEMEERQKAIY-EEERRREAEEERRKQQ--EMEERRRIQEQMRKATEERSRLEAMERER 575
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
322-534 |
9.26e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 9.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 322 KKSNKGELSGLLHQLQEKERLLTATKEDAAATKERCKQLTQEMmtekerssvvmARMKERIGTLEKEHNIFQNKMHVSYQ 401
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRI-----------AALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 402 ETQQMQMKFEQVREQMEAEIAHLKQENGI-----------LRDAVSNTT--NQLESKQSAELNKLRQDcgrlVSELNEKT 468
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQpplalllspedFLDAVRRLQylKYLAPARREQAEELRAD----LAELAALR 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958681438 469 GKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSL 534
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
411-599 |
9.45e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 9.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 411 EQVREQM---EAEIAHLKQENGILrdAVSNTTNQLESKQS---AELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQA 484
Cdd:COG3206 185 PELRKELeeaEAALEEFRQKNGLV--DLSEEAKLLLQQLSeleSQLAEARAELAEAEARLAALRAQLGSGPDALPELLQS 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 485 AA--QLKVQLQEAERRWEE-----------VQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQR 551
Cdd:COG3206 263 PViqQLRAQLAELEAELAElsarytpnhpdVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEAR 342
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1958681438 552 LMQLMESEQKRASQEESMQIQvQDILEQneaLKAQIQQFHSQIAAQTS 599
Cdd:COG3206 343 LAELPELEAELRRLEREVEVA-RELYES---LLQRLEEARLAEALTVG 386
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
414-534 |
1.01e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 414 REQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQE-------GVQKKNAEQAAA 486
Cdd:COG4913 304 LARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLeallaalGLPLPASAEEFA 383
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1958681438 487 QLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSL 534
Cdd:COG4913 384 ALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASL 431
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
594-754 |
1.06e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 43.31 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 594 IAAQTSASVLAEELHKVIAEKDKQlkqTEDSLASEQDHLASKEQELKDvqnvnflLKAEVQKLQalakeqaaaaHEVEKM 673
Cdd:COG2433 373 IRGLSIEEALEELIEKELPEEEPE---AEREKEHEERELTEEEEEIRR-------LEEQVERLE----------AEVEEL 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 674 QKSVHVKDDKIRLLEEQLQRevASRVEELKILNDQnkalqlEVQKLQAvvseqpnkdVVEQMKKCIQEKDEKLRTVEELL 753
Cdd:COG2433 433 EAELEEKDERIERLERELSE--ARSEERREIRKDR------EISRLDR---------EIERLERELEEERERIEELKRKL 495
|
.
gi 1958681438 754 E 754
Cdd:COG2433 496 E 496
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
552-1195 |
1.07e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.49 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 552 LMQL--MESEQKRASqeeSMQIQVQDILEQNEA----LKAQIQQ-----FHSQIAA-QTSASVLAEELHKVIAEKDkQLK 619
Cdd:PRK02224 158 LLQLgkLEEYRERAS---DARLGVERVLSDQRGsldqLKAQIEEkeekdLHERLNGlESELAELDEEIERYEEQRE-QAR 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 620 QTEDSLASEQDHLASKEQELKDvqnvnflLKAEVQKLQALAKEQaaaahEVEKMQKSVHVKDDKIRLLEeqLQREVASRV 699
Cdd:PRK02224 234 ETRDEADEVLEEHEERREELET-------LEAEIEDLRETIAET-----EREREELAEEVRDLRERLEE--LEEERDDLL 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 700 EELKILNDQNKALQLEVQKLQAVVSEQpnKDVVEQMKKCIQEKDEklrTVEELLEtgliQVATREEELNAIRTENSSLTK 779
Cdd:PRK02224 300 AEAGLDDADAEAVEARREELEDRDEEL--RDRLEECRVAAQAHNE---EAESLRE----DADDLEERAEELREEAAELES 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 780 EVQELKAKqmdqvpfvslIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQL------SVTSQVQELQNLLRGKEE 853
Cdd:PRK02224 371 ELEEAREA----------VEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEElreerdELREREAELEATLRTARE 440
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 854 QVDSMKAALEDLTGREKCTQVCSTPRFEELEnvlkEKDNEIKRIEAILKDTKSDLSKKAELLKEVQDENKLfKSQVEQLn 933
Cdd:PRK02224 441 RVEEAEALLEAGKCPECGQPVEGSPHVETIE----EDRERVEELEAELEDLEEEVEEVEERLERAEDLVEA-EDRIERL- 514
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 934 hQNHQQASFPSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLREKNWEAMEALASTEKILQdrvnkTSKERQ 1013
Cdd:PRK02224 515 -EERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLA-----ELKERI 588
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 1014 QQVEAVEleskDLLKRLfpavsvpshSNYSEWLRSFEKKAKACmagpsdTEAVKVLEHRLKEANEMHTllQLECEKYKSV 1093
Cdd:PRK02224 589 ESLERIR----TLLAAI---------ADAEDEIERLREKREAL------AELNDERRERLAEKRERKR--ELEAEFDEAR 647
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 1094 LAETEGILQKLQRSVEQEESKWKVKAEEsRRTIQQMQSSFTASEQELERLRHENKAMENlrrEREHLEIELEKAEVERST 1173
Cdd:PRK02224 648 IEEAREDKERAEEYLEQVEEKLDELREE-RDDLQAEIGAVENELEELEELRERREALEN---RVEALEALYDEAEELESM 723
|
650 660
....*....|....*....|...
gi 1958681438 1174 YvMEVR-ELKTQLNETHSKLQNE 1195
Cdd:PRK02224 724 Y-GDLRaELRQRNVETLERMLNE 745
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
462-643 |
1.28e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.51 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 462 SELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQskfvAKENEVQSLHSKLTDT 541
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIA----EAEAEIEERREELGER 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 542 LVSKQQ---LEQRLMQLMESEQ-----KRASQEESMQIQVQDILEQNEALKAQIQQFHSQI--------AAQTSASVLAE 605
Cdd:COG3883 92 ARALYRsggSVSYLDVLLGSESfsdflDRLSALSKIADADADLLEELKADKAELEAKKAELeaklaeleALKAELEAAKA 171
|
170 180 190
....*....|....*....|....*....|....*...
gi 1958681438 606 ELHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQ 643
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAE 209
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
508-729 |
1.67e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 508 KRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQI 587
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 588 QQFHSQIAAQTSASVLAEELHKV--------IAEKDKQLKQTEDSLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQAL 659
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLalllspedFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 660 AKEQAAAAHEVEKMQKSVhvkddkiRLLEEQLQREVASRVEELKILNDQNKALQLEVQKLQAVVSEQPNK 729
Cdd:COG4942 180 LAELEEERAALEALKAER-------QKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
880-1179 |
2.03e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.42 E-value: 2.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 880 FEELENVLKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQDENKLFKSQVEQLNHQNHQQASFPSQEELQTVISEKEKEI 959
Cdd:pfam17380 336 YAEQERMAMERERELERIRQEERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKI 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 960 TDLCNELESLKNAVEHQRKknndlreknwEAMEALASTEKILQDRVNKTSKERQQQVEAVELESKDLLKRLFpavsvpsh 1039
Cdd:pfam17380 416 QQQKVEMEQIRAEQEEARQ----------REVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKL-------- 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 1040 snysEWLRSFEKKAKAcmagpsDTEAVKVLEHRLKEANEM-------HTLLQLECEKYKSVLAETEgilqklQRSVEQEE 1112
Cdd:pfam17380 478 ----ELEKEKRDRKRA------EEQRRKILEKELEERKQAmieeerkRKLLEKEMEERQKAIYEEE------RRREAEEE 541
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958681438 1113 SKWKVKAEESRRTIQQMQSSfTASEQELERLRHENKAMenlrreREHLEIELEKAEVERSTYVMEVR 1179
Cdd:pfam17380 542 RRKQQEMEERRRIQEQMRKA-TEERSRLEAMEREREMM------RQIVESEKARAEYEATTPITTIK 601
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
477-596 |
2.45e-03 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 41.57 E-value: 2.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 477 QKKNAEQAAAQLKVQLQEAERRwEEVQSYIRKRTAEHEAAQQDLQskfvAKENEVQSLHSKLTDTLVSKQQLEQRLMQLM 556
Cdd:COG1566 84 ALAQAEAQLAAAEAQLARLEAE-LGAEAEIAAAEAQLAAAQAQLD----LAQRELERYQALYKKGAVSQQELDEARAALD 158
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1958681438 557 ESEQKRASQEESMQIQVQDILEQNE--ALKAQIQQFHSQIAA 596
Cdd:COG1566 159 AAQAQLEAAQAQLAQAQAGLREEEElaAAQAQVAQAEAALAQ 200
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
432-1020 |
2.47e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.33 E-value: 2.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 432 RDAVSNTTNQLESKQSAELNKLrqdCGRLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQsyirkrta 511
Cdd:PRK02224 186 RGSLDQLKAQIEEKEEKDLHER---LNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELE-------- 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 512 EHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEAL-------K 584
Cdd:PRK02224 255 TLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELrdrleecR 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 585 AQIQQFHSQI-AAQTSASVL---AEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALA 660
Cdd:PRK02224 335 VAAQAHNEEAeSLREDADDLeerAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFL 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 661 KEQAAAAHEVEKMQKSVHVK----DDKIRLLEEQLQR----------EVASRVEELKILNDQNKALQLEVQKLQAVVSEQ 726
Cdd:PRK02224 415 EELREERDELREREAELEATlrtaRERVEEAEALLEAgkcpecgqpvEGSPHVETIEEDRERVEELEAELEDLEEEVEEV 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 727 PNK-----DVVEQMKKcIQEKDEKLRTVEELLEtgliqvaTREEELNAIRTENSSLTKEVQELKAKQMDQvpfvsliedl 801
Cdd:PRK02224 495 EERleraeDLVEAEDR-IERLEERREDLEELIA-------ERRETIEEKRERAEELRERAAELEAEAEEK---------- 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 802 kkvihekdgqiksveellevelLKVANKEKTVQLSVTSQVQELQNLLRGKEEQVDSMKAALEDLTGREKCTqvcstprfE 881
Cdd:PRK02224 557 ----------------------REAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAE--------D 606
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 882 ELENvLKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQDENKLFKSQveqlnhQNHQQAsfpsqEELQTVISEKEKEITD 961
Cdd:PRK02224 607 EIER-LREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAR------EDKERA-----EEYLEQVEEKLDELRE 674
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958681438 962 LCNELESLKNAVEHQRKKNNDLREK------NWEAMEALASTEKILQDRVNKTSKE-RQQQVEAVE 1020
Cdd:PRK02224 675 ERDDLQAEIGAVENELEELEELRERrealenRVEALEALYDEAEELESMYGDLRAElRQRNVETLE 740
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
386-935 |
3.03e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.02 E-value: 3.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 386 EKEHNIFQNKMHVSYQET--QQMQMKFEQVREQMEAEIAHLK---QENGILRDAVS--NTTNQLESKQSAELNKLRQDCG 458
Cdd:pfam05483 103 QKENKLQENRKIIEAQRKaiQELQFENEKVSLKLEEEIQENKdliKENNATRHLCNllKETCARSAEKTKKYEYEREETR 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 459 RLVSELNEKTGKLQQEGVQ-KKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSK 537
Cdd:pfam05483 183 QVYMDLNNNIEKMILAFEElRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFL 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 538 LTDTLVSKQQLEQR-------LMQLMESEQKRASQEESMQIQVQDILEQNEALKAQIqqfhsQIAAQTsasvlaeeLHKV 610
Cdd:pfam05483 263 LEESRDKANQLEEKtklqdenLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDL-----QIATKT--------ICQL 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 611 IAEKDKQLKQTEDSLASEQDHLASKEQELKDVQNvnfLLKAEVQKLQAlakeqaaaahevekmqksvhvKDDKIRLLEEQ 690
Cdd:pfam05483 330 TEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEE---LLRTEQQRLEK---------------------NEDQLKIITME 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 691 LQREVASRVEELKILNDQnkalQLEVQKLQAVVSE-QPNKDVVEQMKKCIQEKDEKLRTVEELLETGLIQVATREEELNA 769
Cdd:pfam05483 386 LQKKSSELEEMTKFKNNK----EVELEELKKILAEdEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTA 461
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 770 IRTENSSLTKEVQELKAK-QMDQVPFVSLIEDLKKVIHE--KDGQIKSVEELLEVELLKVANKEKTVQLSVTSQVQELQN 846
Cdd:pfam05483 462 IKTSEEHYLKEVEDLKTElEKEKLKNIELTAHCDKLLLEnkELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEE 541
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 847 LLRGKEEQVDSMKAALEDLTGREKCTQVCSTPRFEELENVLKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQDENKLFK 926
Cdd:pfam05483 542 KEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALK 621
|
....*....
gi 1958681438 927 SQVEQLNHQ 935
Cdd:pfam05483 622 KKGSAENKQ 630
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
839-1029 |
3.86e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.29 E-value: 3.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 839 SQVQELQNLLRGKEEQVDSMKAALEDLTGRekctqvcstprFEELENVLKEKDNEIKRIEAILKDTKSDLSKKAELLKEV 918
Cdd:COG1579 17 SELDRLEHRLKELPAELAELEDELAALEAR-----------LEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 919 QDENklfksQVEQLNHQnhqqasfpsQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLREKNWEAMEALASTE 998
Cdd:COG1579 86 RNNK-----EYEALQKE---------IESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEEL 151
|
170 180 190
....*....|....*....|....*....|.
gi 1958681438 999 KILQDRVNKTSKERQQQVEAVElesKDLLKR 1029
Cdd:COG1579 152 AELEAELEELEAEREELAAKIP---PELLAL 179
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
479-1030 |
4.47e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 4.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 479 KNAEQAAAQLKvQLQEAERRWEEVQSyIRKRTAEHEAAQQDLQSKFVAKEneVQSLHSKLTDTLVSKQQLEQRLMQLMES 558
Cdd:COG4913 242 EALEDAREQIE-LLEPIRELAERYAA-ARERLAELEYLRAALRLWFAQRR--LELLEAELEELRAELARLEAELERLEAR 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 559 EQKRASQEESMQIQVQDI-LEQNEALKAQIQQFHSQIAAQTSAsvlAEELHKVIAEKDKQLKQTEDSLASEQ----DHLA 633
Cdd:COG4913 318 LDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERR---RARLEALLAALGLPLPASAEEFAALRaeaaALLE 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 634 SKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRlleEQLQREVASRVEELKILNDqnkaLq 713
Cdd:COG4913 395 ALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALR---DALAEALGLDEAELPFVGE----L- 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 714 LEVQKLQA-----------------VVSEQPNKDVVEqmkkCIQEKDEKLRTVEELLETGLIQVATREEELNAI----RT 772
Cdd:COG4913 467 IEVRPEEErwrgaiervlggfaltlLVPPEHYAAALR----WVNRLHLRGRLVYERVRTGLPDPERPRLDPDSLagklDF 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 773 ENSSLTKEVQELKAKQMDqVPFVSLIEDLKKviHEK----DGQIKSVEELLEVELLKVA---------NKEKTVQLsvTS 839
Cdd:COG4913 543 KPHPFRAWLEAELGRRFD-YVCVDSPEELRR--HPRaitrAGQVKGNGTRHEKDDRRRIrsryvlgfdNRAKLAAL--EA 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 840 QVQELQNLLRGKEEQVDSMKAALEDLTGREKCTQVCSTPRFEELEnvLKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQ 919
Cdd:COG4913 618 ELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEID--VASAEREIAELEAELERLDASSDDLAALEEQLE 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 920 DENKLFKSQVEQLnhqnhqqasfpsqEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNDLREKNWEAMEALASTEK 999
Cdd:COG4913 696 ELEAELEELEEEL-------------DELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDA 762
|
570 580 590
....*....|....*....|....*....|.
gi 1958681438 1000 ILQDRVNKTSKERQQQVEAVELESKDLLKRL 1030
Cdd:COG4913 763 VERELRENLEERIDALRARLNRAEEELERAM 793
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
349-643 |
6.71e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.09 E-value: 6.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 349 DAAATKERCKQLTQEMMTEKERSSVVMAR----MKERIGTLEKEHNIFQ---NKMhvsyQETQQMQMKFEQVREQMEAEI 421
Cdd:COG3096 285 ERALELRRELFGARRQLAEEQYRLVEMAReleeLSARESDLEQDYQAASdhlNLV----QTALRQQEKIERYQEDLEELT 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 422 AHLKQENGILRDAVSNTTNQLESKQSAElnklrQDCGRLVSELNEKTGKL---QQEGVQKKNAEQAAAQLKVQLQEAERR 498
Cdd:COG3096 361 ERLEEQEEVVEEAAEQLAEAEARLEAAE-----EEVDSLKSQLADYQQALdvqQTRAIQYQQAVQALEKARALCGLPDLT 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 499 WEEVQSYIrkrtAEHEAAQQDLQSkfvakenEVQSLHSKLTDTLVSKQQLEQrLMQLME--------------------- 557
Cdd:COG3096 436 PENAEDYL----AAFRAKEQQATE-------EVLELEQKLSVADAARRQFEK-AYELVCkiageversqawqtarellrr 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 558 --SEQKRASQEESMQIQVQDI---LEQNEALKAQIQQFHSQIAAQTSAsvlAEELHKVIAEKDKQLKQTEDSLASEQDHL 632
Cdd:COG3096 504 yrSQQALAQRLQQLRAQLAELeqrLRQQQNAERLLEEFCQRIGQQLDA---AEELEELLAELEAQLEELEEQAAEAVEQR 580
|
330
....*....|.
gi 1958681438 633 ASKEQELKDVQ 643
Cdd:COG3096 581 SELRQQLEQLR 591
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
323-528 |
7.20e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.87 E-value: 7.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 323 KSNKGELSGLLHQLQEKERLLTATKEDAAATKERCKQLTQEMMTEKERssvVMARMKERIGTLEKEHNIFQNkMHVSYQE 402
Cdd:pfam15921 649 KDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNK---LKMQLKSAQSELEQTRNTLKS-MEGSDGH 724
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 403 TQQMQMKFEQVREQMEAEIAHLKQENGILRDAVSNTtNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAE 482
Cdd:pfam15921 725 AMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNA-NKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLK 803
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1958681438 483 QAAAQLKVQLQEAERRWEEVQSYIRKRtaEHEAAQQDLQSKFVAKE 528
Cdd:pfam15921 804 EKVANMEVALDKASLQFAECQDIIQRQ--EQESVRLKLQHTLDVKE 847
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
544-1211 |
9.50e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 40.34 E-value: 9.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 544 SKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEElhKVIAEKDKQLKQTED 623
Cdd:pfam02463 216 KEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEE--KEKKLQEEELKLLAK 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 624 SLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKD-----------DKIRLLEEQLQ 692
Cdd:pfam02463 294 EEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKReaeeeeeeeleKLQEKLEQLEE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 693 REVASRVEELKILNDQNKALQLEVQKLQAVVSEQPNKDVVEQMKKCIQ--EKDEKLRTVEELLETGLIQVATREEELNAI 770
Cdd:pfam02463 374 ELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLkeEKKEELEILEEEEESIELKQGKLTEEKEEL 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 771 RTENSSLTKEVQELKAKQMDQVPFVSLIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQLSVTSQVQELQNLLRG 850
Cdd:pfam02463 454 EKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGD 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 851 KEEQVDSMKAALEDLTGREKCTQVCSTPRFEELENVLKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQD----ENKLFK 926
Cdd:pfam02463 534 LGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILnlaqLDKATL 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 927 SQVEQLNHQNHQQASFPSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNND-----LREKNWEAMEALASTEKIL 1001
Cdd:pfam02463 614 EADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSeltkeLLEIQELQEKAESELAKEE 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 1002 QDRVNKTSKERQQQVEAVELESKDLLKRLFPAVSVPSHSNYSEWLRSFEKKAKACMAgpsdTEAVKVLEHRLKEANEMHT 1081
Cdd:pfam02463 694 ILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEE----EEEKSRLKKEEKEEEKSEL 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681438 1082 LLQLEcekyksvLAETEGILQKLQRSVEQEESKWKVKAEESRRTIQQMQSSFTASEQELERLRHENKAMENLRREREHLE 1161
Cdd:pfam02463 770 SLKEK-------ELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALEL 842
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|.
gi 1958681438 1162 IELEKAEVERSTYV-MEVRELKTQLNETHSKLQNEQTERKKVADDLHKAQQ 1211
Cdd:pfam02463 843 KEEQKLEKLAEEELeRLEEEITKEELLQELLLKEEELEEQKLKDELESKEE 893
|
|
| |
