|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
460-1242 |
3.73e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 84.34 E-value: 3.73e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 460 LVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQ---QDLQSKFVAKENEVQSLHS 536
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQkelYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 537 KLTDTLVSKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDK 616
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 617 QLKQTEDSLASEQDHLASKEQELKDvqnvnfllkaEVQKLQALAKEQAAAAHEVEKmqKSVHVKDDKIRLLEEQLQREVA 696
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLED----------RRERLQQEIEELLKKLEEAEL--KELQAELEELEEELEELQEELE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 697 SRVEELKILNDQNKALQLEVQKLQAVVSE-QPNKDVVEQMKKCIQEKDEKLRTVEELLETG---------LIQV------ 760
Cdd:TIGR02168 458 RLEEALEELREELEEAEQALDAAERELAQlQARLDSLERLQENLEGFSEGVKALLKNQSGLsgilgvlseLISVdegyea 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 761 ---ATREEELNAIRTENSSLTKE-VQELKAKQMDQVPFVSLIEDLKKVIHEKDGQIKsveellevellkvANKEKTVQAL 836
Cdd:TIGR02168 538 aieAALGGRLQAVVVENLNAAKKaIAFLKQNELGRVTFLPLDSIKGTEIQGNDREIL-------------KNIEGFLGVA 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 837 KQEIEILKEEIGNAQLEKAHQLSVTS--QVQELQNLLRGKEEQVDsmkaaledLTGREKCTQVCSTPRFEELENVLKEKD 914
Cdd:TIGR02168 605 KDLVKFDPKLRKALSYLLGGVLVVDDldNALELAKKLRPGYRIVT--------LDGDLVRPGGVITGGSAKTNSSILERR 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 915 NEIKRIEAILKDTKSDLSKKAELLKEVQDENKLFKSQVEQLnhqnhqqasfpsqeelQTVISEKEKEITDLCNELESLKN 994
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQL----------------RKELEELSRQISALRKDLARLEA 740
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 995 AVEHQRKKNNERQQQVEAVELESKDLLKRLfpavsvpsHSNYSEWLRSFEKKAKACMAGPSDTEAVKVLEHRLKEANEMH 1074
Cdd:TIGR02168 741 EVEQLEERIAQLSKELTELEAEIEELEERL--------EEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEL 812
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1075 TLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKVKAEESRRTIQQMQSSFTASEQELERLRHENKAMENLRREREHL 1154
Cdd:TIGR02168 813 TLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALL 892
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1155 EIELEKAEVERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHS-KLQNEQTERKKVADDLHKAQQ 1233
Cdd:TIGR02168 893 RSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSlTLEEAEALENKIEDDEEEARR 972
|
....*....
gi 1958681440 1234 SLNFIHSKI 1242
Cdd:TIGR02168 973 RLKRLENKI 981
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
400-1209 |
1.17e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 79.33 E-value: 1.17e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 400 YQETQQMQMKFEQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNklrqdcgrLVSELNEKTGKLQQEGVQKK 479
Cdd:TIGR02168 241 LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA--------LANEISRLEQQKQILRERLA 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 480 NAEQAAAQLKVQLQEAERRWEEVQsyirKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESE 559
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLDELA----EELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 560 QKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAE--ELHKVIAEKDKQLKQTEDSLASEQDHLASKEQ 637
Cdd:TIGR02168 389 AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAElkELQAELEELEEELEELQEELERLEEALEELRE 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 638 ELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVhvkddKIRLLEEQLQREVASRVEELkILNDQNKALQLEV- 716
Cdd:TIGR02168 469 ELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGV-----KALLKNQSGLSGILGVLSEL-ISVDEGYEAAIEAa 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 717 --QKLQAVVSEqpNKDVVEQMKKCIQEKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKEVQELKAKQMDQVPF 794
Cdd:TIGR02168 543 lgGRLQAVVVE--NLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSY 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 795 ----VSLIEDLKKVIHE------------KDGQIKSVEELLEVELLKVANKektVQALKQEIEILKEEIgNAQLEKAHQL 858
Cdd:TIGR02168 621 llggVLVVDDLDNALELakklrpgyrivtLDGDLVRPGGVITGGSAKTNSS---ILERRREIEELEEKI-EELEEKIAEL 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 859 SVtsQVQELQNLLRGKEEQVDSMKAALEDLTGREKCTQVCSTPRFEELENVLKEKDN---EIKRIEAILKDTKSDLSKKA 935
Cdd:TIGR02168 697 EK--ALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQlskELTELEAEIEELEERLEEAE 774
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 936 ELLKEVQDENKLFKSQVEQLNHQNHQQASfpSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNERQQQVEAVEL 1015
Cdd:TIGR02168 775 EELAEAEAEIEELEAQIEQLKEELKALRE--ALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSE 852
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1016 ESKDLlkrlfpavsvpshsnysewlrsfekkakacmagpsdTEAVKVLEHRLKEANEMHTLLQLECEKYKSVLAETEGIL 1095
Cdd:TIGR02168 853 DIESL------------------------------------AAEIEELEELIEELESELEALLNERASLEEALALLRSEL 896
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1096 QKLQRSVEQEESKwkvkAEESRRTIQQMQSSFTASEQELERLrhENKAMENLRREREHLEIELEKAEVERSTYVMEVREL 1175
Cdd:TIGR02168 897 EELSEELRELESK----RSELRRELEELREKLAQLELRLEGL--EVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEA 970
|
810 820 830 840
....*....|....*....|....*....|....*....|.
gi 1958681440 1176 KDLLTELQKKLD-------DSYSEAVRQNEELNLLKTQLNE 1209
Cdd:TIGR02168 971 RRRLKRLENKIKelgpvnlAAIEEYEELKERYDFLTAQKED 1011
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
448-997 |
8.09e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.51 E-value: 8.09e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 448 AELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAK 527
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 528 ENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEEL 607
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 608 HKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRLL 687
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 688 EEQLQREVASRVEELKILNDQNKALQLEVQKLQAVVSEQPNKDVVEQMKKCIQEKDEkLRTVEELLETgLIQVATREEEL 767
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAV-LIGVEAAYEA-ALEAALAAALQ 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 768 NAIRTENSSLTKEVQELKAKQMDQVPFVSLIEDLKKVIHEKD---GQIKSVEELLEVELLKVANKEKTVQALKQEIEILK 844
Cdd:COG1196 550 NIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAAlarGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVA 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 845 EEIGNAQ-LEKAHQLSVTSQVQELQNLLRGKEEQVDSMKAALEDLTGREKctqvcstpRFEELENVLKEKDNEIKRIEAI 923
Cdd:COG1196 630 ARLEAALrRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEA--------ELEELAERLAEEELELEEALLA 701
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958681440 924 LKDTKSDLSKKAELLKEVQDENKLFKSQVEQLNHQNHQQASFPSQEELQTVISEKEKE--ITDLCNELESLKNAVE 997
Cdd:COG1196 702 EEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPpdLEELERELERLEREIE 777
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
328-923 |
5.52e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.82 E-value: 5.52e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 328 ELSGLLHQLQEKERLLTATKEDAAATKERCKQLTQEMMTEKERssvvMARMKERIGTLEKEhnifqnkmhvsYQETQQMQ 407
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAE----LEELRLELEELELE-----------LEEAQAEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 408 MKFEQVREQMEAEIAHLKQEngilRDAVSNTTNQLEskqsAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAAQ 487
Cdd:COG1196 291 YELLAELARLEQDIARLEER----RRELEERLEELE----EELAELEEELEELEEELEELEEELEEAEEELEEAEAELAE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 488 LKVQLQEAERRWEEvqsyIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQEE 567
Cdd:COG1196 363 AEEALLEAEAELAE----AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEE 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 568 SMQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQNV-- 645
Cdd:COG1196 439 EEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLag 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 646 NFLLKAEVQKLQALAKEQAAAAHEVE--KMQKSVHVKDDKIRLLEEQLQREVASRVEELkILNDQNKALQLEVQKLQAVV 723
Cdd:COG1196 519 LRGLAGAVAVLIGVEAAYEAALEAALaaALQNIVVEDDEVAAAAIEYLKAAKAGRATFL-PLDKIRARAALAAALARGAI 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 724 SEQPNKDVVEQmkkciQEKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKEVQELKAKQMDQvpfvSLIEDLKK 803
Cdd:COG1196 598 GAAVDLVASDL-----READARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGG----SLTGGSRR 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 804 vihEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEILKEEIGNAQLEKAHQLSVTSQVQELQNLLRGKEEQVDSMKA 883
Cdd:COG1196 669 ---ELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEE 745
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 1958681440 884 ALEDLTGREKCTqvcSTPRFEELENVLKEKDNEIKRIEAI 923
Cdd:COG1196 746 ELLEEEALEELP---EPPDLEELERELERLEREIEALGPV 782
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
557-1242 |
1.60e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.40 E-value: 1.60e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 557 ESEQKRASQEESMQiQVQDILE---------QNEALKAQIQQFHSQIAAQTSASVLA---EELHKVIAEKDKQLKQTEDS 624
Cdd:TIGR02168 176 ETERKLERTRENLD-RLEDILNelerqlkslERQAEKAERYKELKAELRELELALLVlrlEELREELEELQEELKEAEEE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 625 LASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKM----QKSVHVKDDKIRLLEEQLQREVASRVE 700
Cdd:TIGR02168 255 LEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQkqilRERLANLERQLEELEAQLEELESKLDE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 701 ELKILNDQNKALQLEVQKLQAVVSEQPNK-DVVEQMKKCIQEKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTK 779
Cdd:TIGR02168 335 LAEELAELEEKLEELKEELESLEAELEELeAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLED 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 780 EVQELKAKQMDQvpfvsLIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEILKEEIGNAQLEKAHQLS 859
Cdd:TIGR02168 415 RRERLQQEIEEL-----LKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQA 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 860 VTSQVQELQNLLRGKEEQVDSMKAALEDLTG-----------REKCTQVCSTPRFEELENVLKEKDNEIKRIEAILKdtK 928
Cdd:TIGR02168 490 RLDSLERLQENLEGFSEGVKALLKNQSGLSGilgvlselisvDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLK--Q 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 929 SDLSKKAELLKEVQDENKLFKSQVEQLNHQNHQQASFpsqEELQTVISEKEKEITDLCNEL---ESLKNAVEHQRKknne 1005
Cdd:TIGR02168 568 NELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVA---KDLVKFDPKLRKALSYLLGGVlvvDDLDNALELAKK---- 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1006 rqqqveaveleskdlLKRLFPAVSVPSHSNYSEWLrsfekkakacMAGPSDTEAVKVLEHR--LKEANEMHTLLQLECEK 1083
Cdd:TIGR02168 641 ---------------LRPGYRIVTLDGDLVRPGGV----------ITGGSAKTNSSILERRreIEELEEKIEELEEKIAE 695
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1084 YKSVLAEtegiLQKLQRSVEQEESKWKVKAEESRRTIQQMQSSFTASEQELERLRHEnkaMENLRREREHLEIELEKAEV 1163
Cdd:TIGR02168 696 LEKALAE----LRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEER---IAQLSKELTELEAEIEELEE 768
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958681440 1164 ERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHSKLQNEQTERKKVADDLHKAQQSLNFIHSKI 1242
Cdd:TIGR02168 769 RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQI 847
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
606-1183 |
2.21e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 65.09 E-value: 2.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 606 ELHKVIAEKDKQLKQTED---SLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDD 682
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENieeLIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEG 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 683 KIRLLEEQLqREVASRVEELKilndqnkalqLEVQKLQAVVSEQPNkdvveqmkkcIQEKDEKLRTVEELLETGLIQVAT 762
Cdd:PRK03918 253 SKRKLEEKI-RELEERIEELK----------KEIEELEEKVKELKE----------LKEKAEEYIKLSEFYEEYLDELRE 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 763 REEELNAIRTENSSLTKEVQELKAKQMDqvpfVSLIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQALK-QEIE 841
Cdd:PRK03918 312 IEKRLSRLEEEINGIEERIKELEEKEER----LEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTgLTPE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 842 ILKEEIGNAQLEKahqLSVTSQVQELQNLLRGKEEQVDSMKAALEDLTGREKCTQVCSTPRFEE-LENVLKEKDNEIKRI 920
Cdd:PRK03918 388 KLEKELEELEKAK---EEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEhRKELLEEYTAELKRI 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 921 EAILKDTKSDLSK----KAELLKEVQDENKLF---------KSQVEQLNHQNHQQASFPSQ--EELQTVISEKEKEITDL 985
Cdd:PRK03918 465 EKELKEIEEKERKlrkeLRELEKVLKKESELIklkelaeqlKELEEKLKKYNLEELEKKAEeyEKLKEKLIKLKGEIKSL 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 986 CNELESLKNAvehqRKKNNERQQQVEAVELESKDLLKRLfPAVSVPSHSNYSEWLRSFEKKAKACMAgpsdteaVKVLEH 1065
Cdd:PRK03918 545 KKELEKLEEL----KKKLAELEKKLDELEEELAELLKEL-EELGFESVEELEERLKELEPFYNEYLE-------LKDAEK 612
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1066 RLKEANEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKVKAEESRRtiqqmqSSFTASEQELERLRHENKAME 1145
Cdd:PRK03918 613 ELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELR------EEYLELSRELAGLRAELEELE 686
|
570 580 590
....*....|....*....|....*....|....*...
gi 1958681440 1146 NLRREREHLEIELEKAEVERSTYVMEVRELKDLLTELQ 1183
Cdd:PRK03918 687 KRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVE 724
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
575-1238 |
4.13e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 64.78 E-value: 4.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 575 DILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDK--QLKQTEDSLASEQDHLASKEQELKDVQNVNFLLKAE 652
Cdd:PTZ00121 1082 DAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKaeDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAE 1161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 653 VQKlQALAKEQAAAAHEVEKMQKSVHV-KDDKIRLLEEQLQREVASRVEELKILNDQNKALqlEVQKLQAVVSEQPNKDV 731
Cdd:PTZ00121 1162 DAR-KAEEARKAEDAKKAEAARKAEEVrKAEELRKAEDARKAEAARKAEEERKAEEARKAE--DAKKAEAVKKAEEAKKD 1238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 732 VEQMKKCiqekdEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKEVQEL----KAKQMDQVPFVSLIEDLKKVIHE 807
Cdd:PTZ00121 1239 AEEAKKA-----EEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAeekkKADEAKKAEEKKKADEAKKKAEE 1313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 808 K------DGQIKSVEELLEVELLKVANKEKTVQALKQEIEILKEEIGNAQLEKAHQLSVTSQVQELQNLLRGKEEQV--- 878
Cdd:PTZ00121 1314 AkkadeaKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKkka 1393
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 879 -DSMKAALEDltgREKCTQVCSTPRFEELENVLKEKDNEIKRIEAILKdtKSDLSKKAELLKEVQDENK----LFKSQVE 953
Cdd:PTZ00121 1394 dEAKKKAEED---KKKADELKKAAAAKKKADEAKKKAEEKKKADEAKK--KAEEAKKADEAKKKAEEAKkaeeAKKKAEE 1468
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 954 QLNHQNHQQASFPSQ--EELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNERQQQVEAVELESKDLLKRLFPAVSVP 1031
Cdd:PTZ00121 1469 AKKADEAKKKAEEAKkaDEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKA 1548
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1032 SHSNYSEWLRSFEKKAKAcmagpsdTEAVKVLEHRLKEANEMHTLLQLECEKYKSVLAETEGILQ-KLQRSVEQEESKWK 1110
Cdd:PTZ00121 1549 DELKKAEELKKAEEKKKA-------EEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKmKAEEAKKAEEAKIK 1621
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1111 V----KAEESRRTIQQMQSSFTASEQELERLRHEN-----KAMENLRREREHLEI--ELEKAEVERSTYVMEVR---ELK 1176
Cdd:PTZ00121 1622 AeelkKAEEEKKKVEQLKKKEAEEKKKAEELKKAEeenkiKAAEEAKKAEEDKKKaeEAKKAEEDEKKAAEALKkeaEEA 1701
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958681440 1177 DLLTELQKKLDDSY--SEAVRQNEELNLLKTQlnethsKLQNEQTERKKVADDLHKAQQSLNFI 1238
Cdd:PTZ00121 1702 KKAEELKKKEAEEKkkAEELKKAEEENKIKAE------EAKKEAEEDKKKAEEAKKDEEEKKKI 1759
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
310-961 |
5.97e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.92 E-value: 5.97e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 310 LKEKSGVIKEALKKSNKgELSGLLHQLQEKERLLTATKEDAAATKERCKQLTQEMMTEKER---SSVVMARMKERIGTLE 386
Cdd:TIGR02168 300 LEQQKQILRERLANLER-QLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEleeLEAELEELESRLEELE 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 387 KEHNIFQNKMHVSYQETQQMQMKfeqvREQMEAEIAHLKQENGILRdavSNTTNQLESKQSAELNKLRQDCGRLVSELNE 466
Cdd:TIGR02168 379 EQLETLRSKVAQLELQIASLNNE----IERLEARLERLEDRRERLQ---QEIEELLKKLEEAELKELQAELEELEEELEE 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 467 KTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSyirkRTAEHEAAQQDLQSKFVAKENEVQSLhSKLTDTLvskq 546
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAAERELAQLQA----RLDSLERLQENLEGFSEGVKALLKNQ-SGLSGIL---- 522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 547 qleQRLMQLMESEQK-RASQEESMQIQVQDILEQNEALKAQIQQFHSQIAAQTSA-SVLAEELHKVIAEKDKQLKQTEDS 624
Cdd:TIGR02168 523 ---GVLSELISVDEGyEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTfLPLDSIKGTEIQGNDREILKNIEG 599
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 625 LASEQDHLASKEQELKDVqnVNFLL-----------KAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRLLEEQLQR 693
Cdd:TIGR02168 600 FLGVAKDLVKFDPKLRKA--LSYLLggvlvvddldnALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRR 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 694 EVASRVEELKILNDQNKALQLEVQKLQAVVSEQpnKDVVEQMKKCIQEKDEKLRTVEELLETGLIQVATREEELNAIRTE 773
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEEL--EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE 755
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 774 NSSLTKEVQELKAKqmdqvpfvslIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEILKEEIGNAQLE 853
Cdd:TIGR02168 756 LTELEAEIEELEER----------LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRER 825
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 854 KAHQL----SVTSQVQELQNLLRGKEEQVDSMKAALEDLTGREkctqvcstprfEELENVLKEKDNEIKRIEAILKDTKS 929
Cdd:TIGR02168 826 LESLErriaATERRLEDLEEQIEELSEDIESLAAEIEELEELI-----------EELESELEALLNERASLEEALALLRS 894
|
650 660 670
....*....|....*....|....*....|..
gi 1958681440 930 DLSKKAELLKEVQDENKLFKSQVEQLNHQNHQ 961
Cdd:TIGR02168 895 ELEELSEELRELESKRSELRRELEELREKLAQ 926
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
902-1209 |
6.18e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.92 E-value: 6.18e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 902 RFEELENVLKEKDNEIKRIEAILKDTKSDL------SKKAELLKEVQDENK---------LFKSQVEQLNHQNHQQASFP 966
Cdd:TIGR02168 173 RRKETERKLERTRENLDRLEDILNELERQLkslerqAEKAERYKELKAELRelelallvlRLEELREELEELQEELKEAE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 967 SQ-EELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNERQQQVEAVELESKDLLKRLfpAVSVPSHSNYSEWLRSFEK 1045
Cdd:TIGR02168 253 EElEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL--ANLERQLEELEAQLEELES 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1046 KAKAcmagpsDTEAVKVLEHRLKEANEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKW---KVKAEESRRTIQQ 1122
Cdd:TIGR02168 331 KLDE------LAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVaqlELQIASLNNEIER 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1123 MQSSFTASEQELERLRHENKA---------MENLRREREHLEIELEKAEVERSTYVMEVRELKDLLTELQKKLDDSYSEA 1193
Cdd:TIGR02168 405 LEARLERLEDRRERLQQEIEEllkkleeaeLKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAEREL 484
|
330
....*....|....*.
gi 1958681440 1194 VRQNEELNLLKTQLNE 1209
Cdd:TIGR02168 485 AQLQARLDSLERLQEN 500
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
410-1220 |
1.13e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.70 E-value: 1.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 410 FEQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQDcgRLVSELNEKTGKLQQEgvQKKNAEQAAAQLK 489
Cdd:TIGR02169 168 FDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQ--ALLKEKREYEGYELLK--EKEALERQKEAIE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 490 VQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQskfvakenevqslhskltdtlvskqQLEQRLMQLMESEQKR------- 562
Cdd:TIGR02169 244 RQLASLEEELEKLTEEISELEKRLEEIEQLLE-------------------------ELNKKIKDLGEEEQLRvkekige 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 563 -ASQEESMQIQVQDILEQNEALKAQIQQFHSQIAAQTSAsvlAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKD 641
Cdd:TIGR02169 299 lEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAE---IEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 642 VQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRLLEEQLQREVASRVEELKILNDQNKALQLEVQKLQA 721
Cdd:TIGR02169 376 VDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 722 VVSEqpNKDVVEQMKKCIQEKDEKLRTVEELLETGLIQVATREEELNAIRTENSSlTKEVQELKAKQMDQVpfVSLIEDL 801
Cdd:TIGR02169 456 KLEQ--LAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRG-GRAVEEVLKASIQGV--HGTVAQL 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 802 KKVIHEKDGQIKSVEELLEVELLkVANKEKTVQAlkqeIEILKEE-IGNAQ---LEKAHQLSVTSQ-------VQELQNL 870
Cdd:TIGR02169 531 GSVGERYATAIEVAAGNRLNNVV-VEDDAVAKEA----IELLKRRkAGRATflpLNKMRDERRDLSilsedgvIGFAVDL 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 871 LRGKEEQVDSMKAALEDL-------TGREKCTQVcstpRFEELENVLKEKDNEI----KRIEAILKDTKSDLSKKAELLK 939
Cdd:TIGR02169 606 VEFDPKYEPAFKYVFGDTlvvedieAARRLMGKY----RMVTLEGELFEKSGAMtggsRAPRGGILFSRSEPAELQRLRE 681
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 940 EVQDENKLFKSQVEQLNH-QNHQQASFPSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNERQQQVEAVELESK 1018
Cdd:TIGR02169 682 RLEGLKRELSSLQSELRRiENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELK 761
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1019 DLLKRLFPavsvpshsnysewlrsFEKKAKACMAGPSDTEAvKVLEHRLKEANEMHTLLQLECEKYKSVLAETEGILQKL 1098
Cdd:TIGR02169 762 ELEARIEE----------------LEEDLHKLEEALNDLEA-RLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRL 824
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1099 QRSVEQeeskwkvkAEESRRTIQQMQSSFTASEQELErlrhenKAMENLRREREHLEIELEKAEVERSTYVMEVRELKDL 1178
Cdd:TIGR02169 825 TLEKEY--------LEKEIQELQEQRIDLKEQIKSIE------KEIENLNGKKEELEEELEELEAALRDLESRLGDLKKE 890
|
810 820 830 840
....*....|....*....|....*....|....*....|..
gi 1958681440 1179 LTELQKKLDDSYSEAVRQNEELNLLKTQLNETHSKLQNEQTE 1220
Cdd:TIGR02169 891 RDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEE 932
|
|
| Rib_recp_KP_reg |
pfam05104 |
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ... |
29-146 |
1.23e-08 |
|
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.
Pssm-ID: 461548 [Multi-domain] Cd Length: 140 Bit Score: 55.13 E-value: 1.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 29 MKETLYDDVLAKQKREQKLISTKADKKKAEKKKNKKK------EIQNGTLHESD----SEHVPQDFKLSDASPVEDEqfV 98
Cdd:pfam05104 1 MKETSYEEALAKQRRELKKTPTEKEKKKKEKKKEKKKkskkkeEKPNGKLPESEqadeSEEEPREFKTPDEAPSAAL--E 78
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1958681440 99 PAPLSVAETSSSVRERKKKEKKQKPSLEEHIIKESDASKIPGKKVEPV 146
Cdd:pfam05104 79 PEPVPTPVPAPVEPEPAPPSESPAPSPKEKKKKEKKSAKVEPAETPEA 126
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
386-1258 |
1.47e-08 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 59.68 E-value: 1.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 386 EKEHNIFQNKMHVSYQET-QQMQMKFEQVREQMEAEIAHLKQENGI---LRDAVSNTTNQLESKQ------SAELNKLRQ 455
Cdd:TIGR00606 173 QKFDEIFSATRYIKALETlRQVRQTQGQKVQEHQMELKYLKQYKEKaceIRDQITSKEAQLESSReivksyENELDPLKN 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 456 DCGRlVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQE--------AERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAK 527
Cdd:TIGR00606 253 RLKE-IEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELkmekvfqgTDEQLNDLYHNHQRTVREKERELVDCQRELEKL 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 528 ENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQEESMQIQVQ-DILEQNEALKAQIQQFHSQIAAQTS-----AS 601
Cdd:TIGR00606 332 NKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLElDGFERGPFSERQIKNFHTLVIERQEdeaktAA 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 602 VLAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHvKD 681
Cdd:TIGR00606 412 QLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELS-KA 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 682 DKIRLLEEQLQREVASRVEELKILndqnKALQLEVQKLQAVVSEQPNKDVVEQMKKCIQEKDEKLRTVEELLETGLIQVA 761
Cdd:TIGR00606 491 EKNSLTETLKKEVKSLQNEKADLD----RKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLL 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 762 TREEELNAIRTENSSLTKEVQELKAKQMDQVPFVSLIEDLKkviHEKDGQIKSVEELLEVELLKVANKEKTvQALKQEIE 841
Cdd:TIGR00606 567 GYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNK---NHINNELESKEEQLSSYEDKLFDVCGS-QDEESDLE 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 842 ILKEEIGNAQLEKAHQLSVTSQVQELQNLLRGKE-------EQVDSMKAALEDLTGREKCTQVCSTPRFEELENVLKEKD 914
Cdd:TIGR00606 643 RLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENqsccpvcQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKE 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 915 NEIKRIEAILKDTKSDLSKKAELLKEVQDENKLFKSQVEQLnhqnhqQASFPSQEELQTVISEKEKEITDLCNELESLKN 994
Cdd:TIGR00606 723 KRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRL------KNDIEEQETLLGTIMPEEESAKVCLTDVTIMER 796
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 995 AVEhqRKKNNERQQQVEAVELESKDLLKrlfpavsvpshsNYSEWLRSFEKKAKACMAGPSDTEAVKVLehrLKEANEMH 1074
Cdd:TIGR00606 797 FQM--ELKDVERKIAQQAAKLQGSDLDR------------TVQQVNQEKQEKQHELDTVVSKIELNRKL---IQDQQEQI 859
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1075 TLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKvKAEESRRTIQQMQSSFTASEQELERLRHENKAMENLRRErehl 1154
Cdd:TIGR00606 860 QHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELST-EVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKET---- 934
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1155 eiELEKAEVERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEelnllkTQLNETHSKLQNEQTERKKVADDLHKAQQS 1234
Cdd:TIGR00606 935 --SNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKE------TELNTVNAQLEECEKHQEKINEDMRLMRQD 1006
|
890 900
....*....|....*....|....
gi 1958681440 1235 LNFIHSKISLKAAGDTVVIENNDI 1258
Cdd:TIGR00606 1007 IDTQKIQERWLQDNLTLRKRENEL 1030
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
636-1022 |
3.79e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 57.72 E-value: 3.79e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 636 EQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRLLEEQLQREVASRVEELKILNDQNKALQLE 715
Cdd:TIGR04523 217 ESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 716 VQKLQAVVSEQPNKDVVEQMK---KCIQEKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKEVQELKakqmdqv 792
Cdd:TIGR04523 297 ISDLNNQKEQDWNKELKSELKnqeKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQ------- 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 793 pfvSLIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEILKEEigNAQLEKAHQLsVTSQVQELQNLLR 872
Cdd:TIGR04523 370 ---NEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQE--KELLEKEIER-LKETIIKNNSEIK 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 873 GKEEQVDSMKAALEDLTGREkctqvcstprfEELENVLKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQDENKLFKSQV 952
Cdd:TIGR04523 444 DLTNQDSVKELIIKNLDNTR-----------ESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKV 512
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958681440 953 EQLNHQnhQQASFPSQEELQTVISEKEKEITDLCNELESLK--NAVEHQRKKNNERQQQVEAVELESKDLLK 1022
Cdd:TIGR04523 513 KDLTKK--ISSLKEKIEKLESEKKEKESKISDLEDELNKDDfeLKKENLEKEIDEKNKEIEELKQTQKSLKK 582
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
579-1187 |
3.87e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.02 E-value: 3.87e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 579 QNEALKAQIQQFHSQIAAQTSAsvlAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQa 658
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAE---LEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLE- 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 659 lakeqaaaahevekmQKSVHVKDDKIRLLEEQLQREVASRVEELKILNDQNKALQLEVQKLQAvvseqpnKDVVEQMKKC 738
Cdd:COG1196 302 ---------------QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEA-------EEELEEAEAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 739 IQEKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKEVQELKAKQmdqvpfvsliEDLKKVIHEKDGQIKSVEEL 818
Cdd:COG1196 360 LAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAE----------EALLERLERLEEELEELEEA 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 819 LEVELLKVANKEKTVQALKQEIEILKEEIGNAQLEKAHQLSVTSQVQELQNLLRGKEEQVDSMKAALEDLtgrekctqvc 898
Cdd:COG1196 430 LAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEA---------- 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 899 stprfeelenvlkEKDNEIKRIEAILKDTKSDLSKKAELLKEVQDENKLFKSQVEQLNHQNHQQASFPSQEELQTVISEK 978
Cdd:COG1196 500 -------------EADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYL 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 979 EKEITDLCNELESLKNAVEHQRKKNNERQQQVEAVELESKDLLKRLFPAVSVPSHSNYSEWLRSFEKKAKACMAGPSDTE 1058
Cdd:COG1196 567 KAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRL 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1059 AVKVLEHRLKEANEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKVKAEESRRTIQQMQSSFTASEQELERLR 1138
Cdd:COG1196 647 REVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEAL 726
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 1958681440 1139 HENKAMENLRREREHLEIE--LEKAEVERSTYVMEVRELKDLLTELQKKLD 1187
Cdd:COG1196 727 EEQLEAEREELLEELLEEEelLEEEALEELPEPPDLEELERELERLEREIE 777
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
902-1222 |
7.18e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.25 E-value: 7.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 902 RFEELENVLKEKDNEIKRIEaiLKDTKSDLSKKAELLKEVQDENKLFKSQVEQLNHQNHQQASfpSQEELQTVISEKEKE 981
Cdd:COG1196 214 RYRELKEELKELEAELLLLK--LRELEAELEELEAELEELEAELEELEAELAELEAELEELRL--ELEELELELEEAQAE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 982 ITDLCNELESLKNAVEHQRKKNNERQQQVEAVELESKDLLKRLfpavsvpshsnysewlrsfekkakacmagpsdteavK 1061
Cdd:COG1196 290 EYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEEL------------------------------------E 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1062 VLEHRLKEANEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKVKAEESRRTIQQMQSSFTASEQELERLRHEN 1141
Cdd:COG1196 334 ELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALL 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1142 KAMENLRREREHLEIELEKAEVERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHSKLQNEQTER 1221
Cdd:COG1196 414 ERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARL 493
|
.
gi 1958681440 1222 K 1222
Cdd:COG1196 494 L 494
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
327-814 |
2.65e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.33 E-value: 2.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 327 GELSGLLHQLQEKERLLTATKEDAAATKERCKQLTQEMMTEKERSSVVMARMKERIGTLEKEHNIFQNKMHVSYQETQQM 406
Cdd:COG1196 288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 407 QMKFEQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQDcgRLVSELNEKTGKLQQEGVQKKNAEQAAA 486
Cdd:COG1196 368 LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLE--RLEEELEELEEALAELEEEEEEEEEALE 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 487 QLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQE 566
Cdd:COG1196 446 EAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGA 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 567 ESMQIQVQDILEQ--NEALKAQIQQFH---SQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKD 641
Cdd:COG1196 526 VAVLIGVEAAYEAalEAALAAALQNIVvedDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVA 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 642 VQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRLLEEQLQREVASRVEELKILNDQNKALQLEVQKLQA 721
Cdd:COG1196 606 SDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELA 685
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 722 VVSEQPNKDVVEQMKKCIQEKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKEVQELKAKQMDQVPFVSLIEDL 801
Cdd:COG1196 686 ERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL 765
|
490
....*....|...
gi 1958681440 802 KKVIHEKDGQIKS 814
Cdd:COG1196 766 ERELERLEREIEA 778
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
482-1005 |
6.88e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.91 E-value: 6.88e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 482 EQAAAQLKVQLQEAERRWEEVQSYIrKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLmeseQK 561
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFI-KRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEL----EE 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 562 RASQEESMQIQVQDILEQNEALKAQIQQFHSQIaaqtsasvlaEELHKVIAEKDKQLKQTEDSLASEQDHLASKEqELKD 641
Cdd:PRK03918 236 LKEEIEELEKELESLEGSKRKLEEKIRELEERI----------EELKKEIEELEEKVKELKELKEKAEEYIKLSE-FYEE 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 642 VQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVhvkdDKIRLLEEQLQREVAsRVEELKILNDQNKALQLEVQKLQA 721
Cdd:PRK03918 305 YLDELREIEKRLSRLEEEINGIEERIKELEEKEERL----EELKKKLKELEKRLE-ELEERHELYEEAKAKKEELERLKK 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 722 VVSEQPNKDVVEQMKKCIQEKDEKLRTVEELletgliqvatrEEELNAIRTENSSLTKEVQELK-AKQMDQVPFVSLIED 800
Cdd:PRK03918 380 RLTGLTPEKLEKELEELEKAKEEIEEEISKI-----------TARIGELKKEIKELKKAIEELKkAKGKCPVCGRELTEE 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 801 LKKVIHEK--------------DGQIKSVEELLEVELLKVANKEKTVQALKQ---EIEILKEEIGNAQLEKAHQlsVTSQ 863
Cdd:PRK03918 449 HRKELLEEytaelkriekelkeIEEKERKLRKELRELEKVLKKESELIKLKElaeQLKELEEKLKKYNLEELEK--KAEE 526
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 864 VQELQNLLRGKEEQVDSMKAALEDLTGREKctqvcstpRFEELENVLKEKDNEIKRIEAILKdtKSDLSKKAELLKEVQD 943
Cdd:PRK03918 527 YEKLKEKLIKLKGEIKSLKKELEKLEELKK--------KLAELEKKLDELEEELAELLKELE--ELGFESVEELEERLKE 596
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958681440 944 ENKLFKSQVEQLNHQNHQQASFPSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNE 1005
Cdd:PRK03918 597 LEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSE 658
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
310-1032 |
7.54e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 7.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 310 LKEKSGVIKEALKKSNKGELSGLLHQLQEKERLLTATKEDAAATKERCKQLTQEMMTEKER----SSVVMARMKERIGTL 385
Cdd:TIGR02169 220 KREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKikdlGEEEQLRVKEKIGEL 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 386 EKEHNIFQNKMHVSYQETQQMQ---MKFEQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQsAELNKLRQDcgrlVS 462
Cdd:TIGR02169 300 EAEIASLERSIAEKERELEDAEerlAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELK-EELEDLRAE----LE 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 463 ELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLtdtl 542
Cdd:TIGR02169 375 EVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEI---- 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 543 vskQQLEQRLMQL---MESEQKRASQEESMQIQVQDILEQNE----ALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKD 615
Cdd:TIGR02169 451 ---KKQEWKLEQLaadLSKYEQELYDLKEEYDRVEKELSKLQrelaEAEAQARASEERVRGGRAVEEVLKASIQGVHGTV 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 616 KQLKQTEDSLASEQDHLASK-------EQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRLLE 688
Cdd:TIGR02169 528 AQLGSVGERYATAIEVAAGNrlnnvvvEDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVE 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 689 EQLQRE-----------VASRVEELKILNDQNKALQLE---VQKLQAVV----SEQPNKDVVEQMKKCIQEKDEKLRTVE 750
Cdd:TIGR02169 608 FDPKYEpafkyvfgdtlVVEDIEAARRLMGKYRMVTLEgelFEKSGAMTggsrAPRGGILFSRSEPAELQRLRERLEGLK 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 751 ELLETGLIQVATREEELNAIRTENSSLTKEVQELKAKqmdqvpfvslIEDLKKVIHEKDGQIKSVEELLEVELLKVANKE 830
Cdd:TIGR02169 688 RELSSLQSELRRIENRLDELSQELSDASRKIGEIEKE----------IEQLEQEEEKLKERLEELEEDLSSLEQEIENVK 757
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 831 KTVQALKQEIEILKEEIGN--AQLEKAHQLSVTSQVQELQNLLRGKEEQVDSMKAALEDLTGREKctqvcstpRFEELEN 908
Cdd:TIGR02169 758 SELKELEARIEELEEDLHKleEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLN--------RLTLEKE 829
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 909 VLKEKDNEIKRIEAILKDTKSDLSKKAELLK----EVQDENKLFKSQVEQLNHQnhqqasfpsQEELQTVISEKEKEITD 984
Cdd:TIGR02169 830 YLEKEIQELQEQRIDLKEQIKSIEKEIENLNgkkeELEEELEELEAALRDLESR---------LGDLKKERDELEAQLRE 900
|
730 740 750 760
....*....|....*....|....*....|....*....|....*...
gi 1958681440 985 LCNELESLKNAVEHQRKKNNERQQQVEAVELESKDLLKRLFPAVSVPS 1032
Cdd:TIGR02169 901 LERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPE 948
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
798-1236 |
8.02e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.53 E-value: 8.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 798 IEDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEILKEEIGNAQLEKahqLSVTSQVQELQNLLRGKEEQ 877
Cdd:PRK03918 191 IEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKEL---ESLEGSKRKLEEKIRELEER 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 878 VDSMKAALEDLTGREKCTQVC--STPRFEELENVLKEKDNEIKRIEAILKDTK----------SDLSKKAELLKEVQDEN 945
Cdd:PRK03918 268 IEELKKEIEELEEKVKELKELkeKAEEYIKLSEFYEEYLDELREIEKRLSRLEeeingieeriKELEEKEERLEELKKKL 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 946 KLFKSQVEQLN--HQNHQQASfPSQEELQTVISE-KEKEITDLCNELESLKNAVEHQRKKNNERQQQVEAVELESKDLLK 1022
Cdd:PRK03918 348 KELEKRLEELEerHELYEEAK-AKKEELERLKKRlTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKK 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1023 RLfpavsvpshsnysEWLRSFEKKAKACMAGPSD----------TEAVKVLEHRLKEANEMHTLLQLECEKYKSVLAETE 1092
Cdd:PRK03918 427 AI-------------EELKKAKGKCPVCGRELTEehrkelleeyTAELKRIEKELKEIEEKERKLRKELRELEKVLKKES 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1093 GILQKLQ-----RSVEQEESKWKV-KAEESRRTIQQMQSSFTASEQELERLRHENKAMENLRREREHLEIELEKAEVERS 1166
Cdd:PRK03918 494 ELIKLKElaeqlKELEEKLKKYNLeELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELA 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1167 TYVMEVR--------ELKDLLTELQK------KLDDSYSEAVRQNEELNLLKTQLNETHSKLQNEQTERKKVADDLHKAQ 1232
Cdd:PRK03918 574 ELLKELEelgfesveELEERLKELEPfyneylELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELE 653
|
....
gi 1958681440 1233 QSLN 1236
Cdd:PRK03918 654 KKYS 657
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
584-983 |
1.68e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 52.74 E-value: 1.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 584 KAQIQQFHSQIAAQT-SASVLAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKE 662
Cdd:TIGR00606 690 EAELQEFISDLQSKLrLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEE 769
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 663 QAAAAHEVEKMQKSVHVKDDKIRLLEeQLQREvasrveelkiLNDQNKALQLEVQKLQAVVSEQpnkdVVEQMKKCIQEK 742
Cdd:TIGR00606 770 QETLLGTIMPEEESAKVCLTDVTIME-RFQME----------LKDVERKIAQQAAKLQGSDLDR----TVQQVNQEKQEK 834
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 743 DEKLRTV-------EELLETGLIQVATREEELNAIRTENSSLTKEVQELKAKQMDQVPFVSLIEDLKKVIHEKDGQI--- 812
Cdd:TIGR00606 835 QHELDTVvskielnRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDspl 914
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 813 -KSVEELLEVELLKVANKEKTVQALKQEIEILKEEIGNAQlekAHQLSVTSQVQE-LQNLLRGKEEQVDSMKAALEDLTG 890
Cdd:TIGR00606 915 eTFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIH---GYMKDIENKIQDgKDDYLKQKETELNTVNAQLEECEK 991
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 891 REKctqvcstpRFEELENVLKEKDNEIKRIEAILKDTKSdLSKKAELLKEVQDENKLFKSQVEQLNHQNHQQASFPSQEE 970
Cdd:TIGR00606 992 HQE--------KINEDMRLMRQDIDTQKIQERWLQDNLT-LRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEEN 1062
|
410
....*....|...
gi 1958681440 971 LQTVISEKEKEIT 983
Cdd:TIGR00606 1063 IDLIKRNHVLALG 1075
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
545-1245 |
1.76e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.76 E-value: 1.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 545 KQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAaqtsasvlaeELHKVIAEKDKQLKQTEDS 624
Cdd:TIGR02169 197 RQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLA----------SLEEELEKLTEEISELEKR 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 625 LASEQDHLASKEQELKDVQNVNFL-LKAEVQKLQAlakeqaaaahEVEKMQKSVHVKDDKIRLLEEQLQREVASR---VE 700
Cdd:TIGR02169 267 LEEIEQLLEELNKKIKDLGEEEQLrVKEKIGELEA----------EIASLERSIAEKERELEDAEERLAKLEAEIdklLA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 701 ELKILNDQNKALQLEVQKLQAVVSEQpnKDVVEQMKKCIQEKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKE 780
Cdd:TIGR02169 337 EIEELEREIEEERKRRDKLTEEYAEL--KEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEE 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 781 VQELKAKQMDQVPFVSLIED----LKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEILKEEIGNAQLEKAh 856
Cdd:TIGR02169 415 LQRLSEELADLNAAIAGIEAkineLEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELA- 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 857 qlSVTSQVQELQNLLRGKEEQVDSMKAALEDLTG--------REKCTQVCSTPRFEELENVLKEKDNEIKRIEAILKDTK 928
Cdd:TIGR02169 494 --EAEAQARASEERVRGGRAVEEVLKASIQGVHGtvaqlgsvGERYATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRK 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 929 ----------------SDLSKKAE-----LLKEVQDENKLFKSQVEQ-----LNHQNHQQA------------------- 963
Cdd:TIGR02169 572 agratflplnkmrderRDLSILSEdgvigFAVDLVEFDPKYEPAFKYvfgdtLVVEDIEAArrlmgkyrmvtlegelfek 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 964 -------SFPSQEELQTVISEKEK------EITDLCNELESLKNAVEHQRKKNNERQQQVEAVELESKDLLKRLfpavsv 1030
Cdd:TIGR02169 652 sgamtggSRAPRGGILFSRSEPAElqrlreRLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEI------ 725
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1031 pshsnysEWLRSFEKKAKAcmagpsdteavkvlehRLKEANEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKW- 1109
Cdd:TIGR02169 726 -------EQLEQEEEKLKE----------------RLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALn 782
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1110 KVKAEESRRTIQQMQSSFTASEQELERLRhenKAMENLRREREHLEIELEKAEVERSTYVMEVRELKDLLTELQKKLDDS 1189
Cdd:TIGR02169 783 DLEARLSHSRIPEIQAELSKLEEEVSRIE---ARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENL 859
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958681440 1190 YSEAVRQNEELNLLKTQLNETHSKLQNEQTERKKVADDLHKAQQSLNFIHSKISLK 1245
Cdd:TIGR02169 860 NGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKK 915
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
351-805 |
2.57e-06 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 51.98 E-value: 2.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 351 AATKERCKQLTQEMmteKERSSVVMARMKERIGTLEKEHNiFQNKMHVSYQETQQMQmkfeQVREQMEAEIAHLKQENGI 430
Cdd:PRK10929 19 AATAPDEKQITQEL---EQAKAAKTPAQAEIVEALQSALN-WLEERKGSLERAKQYQ----QVIDNFPKLSAELRQQLNN 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 431 LRDAVSNttnqLESKQSAelNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRT 510
Cdd:PRK10929 91 ERDEPRS----VPPNMST--DALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 511 AEHEAAQQdlqSKFVAKENEVQSLHSKLtdtlvskQQLEqrLMQLmeSEQKRasQEES-MQIQVQDilEQNEALKAQIQQ 589
Cdd:PRK10929 165 TPNTPLAQ---AQLTALQAESAALKALV-------DELE--LAQL--SANNR--QELArLRSELAK--KRSQQLDAYLQA 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 590 FHSQIAAQ---------TSASVLAE---ELHKVIAE---KDKQLKQTEDSLASEQDHLASKE-QELKDVQNVNFLLKA-- 651
Cdd:PRK10929 227 LRNQLNSQrqreaeralESTELLAEqsgDLPKSIVAqfkINRELSQALNQQAQRMDLIASQQrQAASQTLQVRQALNTlr 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 652 -EVQKLQALAKEQAAAAHEVEK---MQKSvhvkddkirlleEQLQREVAS-RVEELK---ILNDQNKALQLEVQKLQAVV 723
Cdd:PRK10929 307 eQSQWLGVSNALGEALRAQVARlpeMPKP------------QQLDTEMAQlRVQRLRyedLLNKQPQLRQIRQADGQPLT 374
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 724 SEQpnkdvveqmkKCIQekDEKLRTVEELLETGLIQVATREEELNAIRTENSSLT---KEVQELKAKQMDQVPFVS---- 796
Cdd:PRK10929 375 AEQ----------NRIL--DAQLRTQRELLNSLLSGGDTLILELTKLKVANSQLEdalKEVNEATHRYLFWVADVSpisl 442
|
490
....*....|....
gi 1958681440 797 -----LIEDLKKVI 805
Cdd:PRK10929 443 sypleIAQDLRRLL 456
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
733-1024 |
3.00e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 51.47 E-value: 3.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 733 EQMKKC--IQEKDEKLRTVEELLETGLIQVATREEELNAIRTEN-SSLTKEVQELKAKQMDQVPFVSLIEDLKKVIHEKD 809
Cdd:PRK05771 4 VRMKKVliVTLKSYKDEVLEALHELGVVHIEDLKEELSNERLRKlRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 810 GQ--IKSVEELLEVELLKVANKEKTVQALKQEIEILKEEIgnAQLEKAHQLSVtsqvqELQNLLRGKEEQVdsmkaaled 887
Cdd:PRK05771 84 LEelIKDVEEELEKIEKEIKELEEEISELENEIKELEQEI--ERLEPWGNFDL-----DLSLLLGFKYVSV--------- 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 888 LTGREKCTQVCSTPRFEELENVLKEKDNEIKRIEAILKDtKSDLSKKAELLKEVQDENKlfksqveqlnhqnhqqaSFPS 967
Cdd:PRK05771 148 FVGTVPEDKLEELKLESDVENVEYISTDKGYVYVVVVVL-KELSDEVEEELKKLGFERL-----------------ELEE 209
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 968 QEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNERQQQVEAV---ELESKDLLKRL 1024
Cdd:PRK05771 210 EGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYleiELERAEALSKF 269
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
393-1023 |
3.40e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.66 E-value: 3.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 393 QNKMHVSYQetqQMQMKFEQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKlRQDCGRLVSELnektgklq 472
Cdd:pfam15921 255 QNKIELLLQ---QHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQ-NSMYMRQLSDL-------- 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 473 qegvqkknaEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRL 552
Cdd:pfam15921 323 ---------ESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKEL 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 553 MQLMESEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAAQTSasvlaeelhkviaEKDKQLKQTEDSLASEQDHL 632
Cdd:pfam15921 394 SLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKS-------------ECQGQMERQMAAIQGKNESL 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 633 ASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRLLEEQLQReVASRVeELKILNDQNkaL 712
Cdd:pfam15921 461 EKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITK-LRSRV-DLKLQELQH--L 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 713 QLEVQKLQAVVSEqpnkdvVEQMKKCIQEKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKEVQElkaKQMDQV 792
Cdd:pfam15921 537 KNEGDHLRNVQTE------CEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEIND---RRLELQ 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 793 PFVSLIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEILKEEIGNAQLEKAhqlSVTSQVQELQNLLR 872
Cdd:pfam15921 608 EFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELN---SLSEDYEVLKRNFR 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 873 GKEEQvdsmkaaLEDLTGREKCTQVCSTPRFEELENVLKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQDENKLFKSQV 952
Cdd:pfam15921 685 NKSEE-------METTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAM 757
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958681440 953 EQLNHQNH--QQASFPSQEELQTVISEKEKeitdLCNELESLKNAVEHQRKKNNERQQQVEAVEL---ESKDLLKR 1023
Cdd:pfam15921 758 TNANKEKHflKEEKNKLSQELSTVATEKNK----MAGELEVLRSQERRLKEKVANMEVALDKASLqfaECQDIIQR 829
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
455-1228 |
6.00e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.89 E-value: 6.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 455 QDCGRLVSELNEKTGKlqqegvQKKNAEQAAAQLKVQLQEAERRwEEVQSYIRKRTAEheaAQQDLQSKFVAKENEVQSL 534
Cdd:pfam15921 88 KDLQRRLNESNELHEK------QKFYLRQSVIDLQTKLQEMQME-RDAMADIRRRESQ---SQEDLRNQLQNTVHELEAA 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 535 HSKLTDTLVSKQQLEQRLMQLMESEQKRASQEESMQIQvqdiLEQNEALKAQIQQFHSQIAAQTSASVLAeelhKVIAEK 614
Cdd:pfam15921 158 KCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVD----FEEASGKKIYEHDSMSTMHFRSLGSAIS----KILREL 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 615 DKQLKQTEDSLASEQDHLASKEQELKDvqNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRLLEEQLQRE 694
Cdd:pfam15921 230 DTEISYLKGRIFPVEDQLEALKSESQN--KIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQ 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 695 VasrveelkilNDQNKALQLEVQKLQAVVSEQpnKDVVEQMKKCIQEKDEKLRTVEELLETGLIQVATREEELNairTEN 774
Cdd:pfam15921 308 A----------RNQNSMYMRQLSDLESTVSQL--RSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFS---QES 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 775 SSLTKEVQELKAKQMDQVPFVSLIEDLKKVIHEKDG----QIKSVEELLEVELLKVANKEKTVQALKQEIEILKE----- 845
Cdd:pfam15921 373 GNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTgnsiTIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMErqmaa 452
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 846 -EIGNAQLEKAHqlSVTSQVQELQNLLRGKEEQVDSMKAALEDltgrekctqvcSTPRFEELENVLKEKDNEIKRIEAIL 924
Cdd:pfam15921 453 iQGKNESLEKVS--SLTAQLESTKEMLRKVVEELTAKKMTLES-----------SERTVSDLTASLQEKERAIEATNAEI 519
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 925 KDTKSDLSKKAELLKEVQDENklfksqveqlNHQNHQQASFpsqEELQTVISEKEKEITDLCNELESLKNAV-EHQRKKN 1003
Cdd:pfam15921 520 TKLRSRVDLKLQELQHLKNEG----------DHLRNVQTEC---EALKLQMAEKDKVIEILRQQIENMTQLVgQHGRTAG 586
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1004 nerQQQVEAVELESKDLLKRLFPAVSVPSHSNYSEWLRSFE--------KKAKACMAGPSDTEAVK-VLEHRLKEANEMH 1074
Cdd:pfam15921 587 ---AMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEarvsdlelEKVKLVNAGSERLRAVKdIKQERDQLLNEVK 663
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1075 TllqlecekyksvlaeTEGILQKLQRSVEQEESKWKVKAEESRRTIQQMQSSFTASEQELERLRHENKAMENLRREREHL 1154
Cdd:pfam15921 664 T---------------SRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKV 728
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958681440 1155 EIELEKaeverstyvmEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHSKLQNEQTERKKVADDL 1228
Cdd:pfam15921 729 AMGMQK----------QITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGEL 792
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1059-1235 |
6.20e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.71 E-value: 6.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1059 AVKVLEHRLKEANEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKVKAEESRRTIQQMQSSFTASEQELERLR 1138
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1139 HENKAMENLRREREHLEIELEKAEVERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHSKLQNEQ 1218
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170
....*....|....*..
gi 1958681440 1219 TERKKVADDLHKAQQSL 1235
Cdd:COG1196 393 RAAAELAAQLEELEEAE 409
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
902-1243 |
6.80e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 6.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 902 RFEELENVLKEKDNEIKRieaiLKDTKSDLSKKAELLKEVQDenklfksqVEQLNHQNHQQASFPSQEELQTVISEKEKE 981
Cdd:TIGR02169 185 NIERLDLIIDEKRQQLER----LRREREKAERYQALLKEKRE--------YEGYELLKEKEALERQKEAIERQLASLEEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 982 ITDLCNELESLknavehqRKKNNERQQQVEAVELESKDLLKRLFPAVSvpshsnysEWLRSFEKKAKACMAgpsdteAVK 1061
Cdd:TIGR02169 253 LEKLTEEISEL-------EKRLEEIEQLLEELNKKIKDLGEEEQLRVK--------EKIGELEAEIASLER------SIA 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1062 VLEHRLKEANEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKVKAEESRRTIQQMQSSFTASEQELERLRHEN 1141
Cdd:TIGR02169 312 EKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1142 KAMENLRREREHLEIELEKaeverstyvmevreLKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHSKLQNEQTER 1221
Cdd:TIGR02169 392 EKLEKLKREINELKRELDR--------------LQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKL 457
|
330 340
....*....|....*....|..
gi 1958681440 1222 KKVADDLHKAQQSLNFIHSKIS 1243
Cdd:TIGR02169 458 EQLAADLSKYEQELYDLKEEYD 479
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
478-1072 |
1.20e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.14 E-value: 1.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 478 KKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSkltdtlvSKQQLEQRLMQLME 557
Cdd:PTZ00121 1236 KKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADE-------AKKAEEKKKADEAK 1308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 558 SEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQ 637
Cdd:PTZ00121 1309 KKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE 1388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 638 ELKdvqnvnfllKAEvqKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRLLEEQLQREVASRVEELKILNDQNKALQLEVQ 717
Cdd:PTZ00121 1389 EKK---------KAD--EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 718 KLQAVVSEQPNKDVVEQMKKCIQE--KDEKLRTVEELLETGLIQVATREEElnaiRTENSSLTKEVQELKAKQMDQVPFV 795
Cdd:PTZ00121 1458 KAEEAKKKAEEAKKADEAKKKAEEakKADEAKKKAEEAKKKADEAKKAAEA----KKKADEAKKAEEAKKADEAKKAEEA 1533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 796 SLIEDLKKVIHEKdgqiKSVEELLEVELLKVANKEKTVQALKQEieilkeEIGNAQLEKAHQLSVTSQVQELQNLLRGKE 875
Cdd:PTZ00121 1534 KKADEAKKAEEKK----KADELKKAEELKKAEEKKKAEEAKKAE------EDKNMALRKAEEAKKAEEARIEEVMKLYEE 1603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 876 EQVDSMKAALEDLTGREKCTQVCSTPRFEELENVLKEKD-NEIKRIEAILKDTKSDLSKKAELLKEVQDEnklfKSQVEQ 954
Cdd:PTZ00121 1604 EKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEaEEKKKAEELKKAEEENKIKAAEEAKKAEED----KKKAEE 1679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 955 LNHQNHQQAsfpSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNERQQQVEAVELESKDLLKRLFPAVSVPSHS 1034
Cdd:PTZ00121 1680 AKKAEEDEK---KAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEK 1756
|
570 580 590
....*....|....*....|....*....|....*...
gi 1958681440 1035 NYSEWLRSFEKKAkacmAGPSDTEAVKVLEHRLKEANE 1072
Cdd:PTZ00121 1757 KKIAHLKKEEEKK----AEEIRKEKEAVIEEELDEEDE 1790
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
444-644 |
1.52e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 1.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 444 SKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDL--Q 521
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELeaQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 522 SKFVAKENEVQSLHSKLTDTLV-----SKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAA 596
Cdd:COG4942 103 KEELAELLRALYRLGRQPPLALllspeDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAE 182
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1958681440 597 QTSAsvlAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQN 644
Cdd:COG4942 183 LEEE---RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
291-977 |
1.58e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 1.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 291 LSLKTMMFSEDEALCVVDLLKEKSGVIKEAlkksnKGELSGLLHQLQEKERLLTATKEDAAATKERCKQLTQEMMTEKER 370
Cdd:TIGR02169 277 LNKKIKDLGEEEQLRVKEKIGELEAEIASL-----ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKR 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 371 SSVVMARMKERIGTLEKEHNIFQN---KMHVSYQETQQMQMKFEQVREQME---AEIAHLKQENGILRDAVSNTTNQLES 444
Cdd:TIGR02169 352 RDKLTEEYAELKEELEDLRAELEEvdkEFAETRDELKDYREKLEKLKREINelkRELDRLQEELQRLSEELADLNAAIAG 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 445 KQsAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKF 524
Cdd:TIGR02169 432 IE-AKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGR 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 525 VAKE---NEVQSLHSKLT---------------------------DTLVSKQQLEQ--------------RLMQLMESEQ 560
Cdd:TIGR02169 511 AVEEvlkASIQGVHGTVAqlgsvgeryataievaagnrlnnvvveDDAVAKEAIELlkrrkagratflplNKMRDERRDL 590
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 561 KRASQEESMQIQV-----------------QD--ILEQNEALKAQIQQFH---------SQIAAQTSASVLAEELHKVIA 612
Cdd:TIGR02169 591 SILSEDGVIGFAVdlvefdpkyepafkyvfGDtlVVEDIEAARRLMGKYRmvtlegelfEKSGAMTGGSRAPRGGILFSR 670
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 613 EKDKQLKQTEDSLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRLLEEQLQ 692
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE 750
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 693 REVASRVEELKILNDQNKALQLEVQKLQAVVSEQPNKDVVEQmkkcIQEKDEKLRTVEELLETGLIQVATREEELNAIRT 772
Cdd:TIGR02169 751 QEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR----IPEIQAELSKLEEEVSRIEARLREIEQKLNRLTL 826
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 773 ENSSLTKEVQELKAKQMDqvpFVSLIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEILKEEIGNAQL 852
Cdd:TIGR02169 827 EKEYLEKEIQELQEQRID---LKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELER 903
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 853 EKAHQLSVTSQVQELQNLLRGKEEQVDSMKAALEDLTGREKCTQVCsTPRFEELENVLKEKDNEIKRIEAI--------- 923
Cdd:TIGR02169 904 KIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEE-ELSLEDVQAELQRVEEEIRALEPVnmlaiqeye 982
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*
gi 1958681440 924 -LKDTKSDLSKKAELLKEVQDENKLFKSQVEQLNHQNHQQASFPSQEELQTVISE 977
Cdd:TIGR02169 983 eVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFMEAFEAINENFNEIFAE 1037
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
932-1247 |
3.58e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.39 E-value: 3.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 932 SKKAELLKEVQDENKLFKSQVEQLNHQNHQQasfpSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNERQQQVE 1011
Cdd:COG1196 209 AEKAERYRELKEELKELEAELLLLKLRELEA----ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1012 AVELESKDLLKRLfpavsvpshsnysewlrsfekkakacmagpsdteavKVLEHRLKEANEMHTLLQLECEKYKSVLAET 1091
Cdd:COG1196 285 EAQAEEYELLAEL------------------------------------ARLEQDIARLEERRRELEERLEELEEELAEL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1092 EGILQKLQRSVEQEESKwKVKAEESRRTIQQMQSSFTASEQELERLRHEN---------------KAMENLRREREHLEI 1156
Cdd:COG1196 329 EEELEELEEELEELEEE-LEEAEEELEEAEAELAEAEEALLEAEAELAEAeeeleelaeellealRAAAELAAQLEELEE 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1157 ELEKAEVERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHSKLQNEQTERKKVADDLHKAQQSLN 1236
Cdd:COG1196 408 AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA 487
|
330
....*....|.
gi 1958681440 1237 FIHSKISLKAA 1247
Cdd:COG1196 488 EAAARLLLLLE 498
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
610-1236 |
4.78e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.71 E-value: 4.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 610 VIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQNvNFLLKAEVQKlqalakEQAAAAHEVEKMQKSVHVKDDKIRLLEE 689
Cdd:TIGR04523 27 IANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDK-NLNKDEEKIN------NSNNKIKILEQQIKDLNDKLKKNKDKIN 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 690 QLQREVASRVEELKILNDQNKALQLEVQKLqavvseqpnkdvveqmKKCIQEKDEKLRTVeelletgLIQVATREEELNA 769
Cdd:TIGR04523 100 KLNSDLSKINSEIKNDKEQKNKLEVELNKL----------------EKQKKENKKNIDKF-------LTEIKKKEKELEK 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 770 IRTENSSLTKEVQELKakqmdqvpfvsliEDLKKVIHEKDgqiksveellevellkvaNKEKTVQALKQEIEILKEEIGN 849
Cdd:TIGR04523 157 LNNKYNDLKKQKEELE-------------NELNLLEKEKL------------------NIQKNIDKIKNKLLKLELLLSN 205
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 850 AQLEKAHQLSVTSQVQELQNLLRGKEEQVDSMKAALEDLTGREKCTQVCSTPRFEELENV---LKEKDNEIKRIEAILKD 926
Cdd:TIGR04523 206 LKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIkkqLSEKQKELEQNNKKIKE 285
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 927 TKSDLSK-KAELL----KEVQDENKLFKSQVEQLNHQnhqqasfpsQEELQTVISEKEKEITDLCNELESLKNAVEHQRK 1001
Cdd:TIGR04523 286 LEKQLNQlKSEISdlnnQKEQDWNKELKSELKNQEKK---------LEEIQNQISQNNKIISQLNEQISQLKKELTNSES 356
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1002 KNNERQQQVEAVELESKDLLKRlfpavsvpsHSNYSEWLRSFEKKAKACMAGPSDTEAV-KVLEHRLKEANEMHTLLQLE 1080
Cdd:TIGR04523 357 ENSEKQRELEEKQNEIEKLKKE---------NQSYKQEIKNLESQINDLESKIQNQEKLnQQKDEQIKKLQQEKELLEKE 427
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1081 CEKYKSVL--------------AETEGILQKLQRSVEQEESKWKV---KAEESRRTIQQMQSSFTASEQELERLRHENKA 1143
Cdd:TIGR04523 428 IERLKETIiknnseikdltnqdSVKELIIKNLDNTRESLETQLKVlsrSINKIKQNLEQKQKELKSKEKELKKLNEEKKE 507
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1144 MEN----LRREREHLEIELEKAEVERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELNLlkTQLNETHSKLQNEQT 1219
Cdd:TIGR04523 508 LEEkvkdLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEI--EELKQTQKSLKKKQE 585
|
650
....*....|....*..
gi 1958681440 1220 ERKKVADDLHKAQQSLN 1236
Cdd:TIGR04523 586 EKQELIDQKEKEKKDLI 602
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
418-956 |
5.97e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.37 E-value: 5.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 418 EAEIAHLKQENGILRDAVSNTTNQLESKQ---SAELNKLRqdcgRLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQE 494
Cdd:PRK03918 188 TENIEELIKEKEKELEEVLREINEISSELpelREELEKLE----KEVKELEELKEEIEELEKELESLEGSKRKLEEKIRE 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 495 AERRWEEVqsyiRKRTAEHEAAQQDLQS-KFVAKE-NEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQEESMQIQ 572
Cdd:PRK03918 264 LEERIEEL----KKEIEELEEKVKELKElKEKAEEyIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEER 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 573 VQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKViaeKDKQLKQTEDSLASEQDHLASKEQELKDVQNVnflLKAE 652
Cdd:PRK03918 340 LEELKKKLKELEKRLEELEERHELYEEAKAKKEELERL---KKRLTGLTPEKLEKELEELEKAKEEIEEEISK---ITAR 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 653 VQKLQALAKEQAAAAHEVEKMQKSVHV------KDDKIRLLEEQLqREVASRVEELKILNDQNKALQLEVQKLQAVVSEQ 726
Cdd:PRK03918 414 IGELKKEIKELKKAIEELKKAKGKCPVcgreltEEHRKELLEEYT-AELKRIEKELKEIEEKERKLRKELRELEKVLKKE 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 727 PNKDVVEQMKKCIQEKDEKLRTVE-ELLETGLIQVATREEELNAIRTENSSLTKEVQELKAkqmdqvpfvsLIEDLKKVI 805
Cdd:PRK03918 493 SELIKLKELAEQLKELEEKLKKYNlEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE----------LKKKLAELE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 806 HEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEILKEEIGNAQLEKAHQLSVTSQVQELQNLLRGKEEQVDSMKAAL 885
Cdd:PRK03918 563 KKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRL 642
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958681440 886 EDLTGR-EKCTQVCSTPRFEELENVLKEKDNEIKRIEAILKDTKS---DLSKKAELLKEVQDENKLFKSQVEQLN 956
Cdd:PRK03918 643 EELRKElEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKrreEIKKTLEKLKEELEEREKAKKELEKLE 717
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
479-639 |
1.07e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.87 E-value: 1.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 479 KNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSkfvakENEVQSLHSkltdtlvskqQLEQRLMQLmeS 558
Cdd:COG3096 508 QALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDA-----AEELEELLA----------ELEAQLEEL--E 570
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 559 EQKRASQEESMQIQvqdilEQNEALKAQIQQFHSQ----IAAQTSASVLAEELHKVIA-------------EKDKQLKQT 621
Cdd:COG3096 571 EQAAEAVEQRSELR-----QQLEQLRARIKELAARapawLAAQDALERLREQSGEALAdsqevtaamqqllEREREATVE 645
|
170
....*....|....*...
gi 1958681440 622 EDSLASEQDHLASKEQEL 639
Cdd:COG3096 646 RDELAARKQALESQIERL 663
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
483-1170 |
1.12e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.89 E-value: 1.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 483 QAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQ--QDLQSKFVAKENEVQSLHSKLTDTlvSKQQLEQRLMQLMESEQ 560
Cdd:TIGR00618 222 QVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLkkQQLLKQLRARIEELRAQEAVLEET--QERINRARKAAPLAAHI 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 561 KRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQELK 640
Cdd:TIGR00618 300 KAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQ 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 641 DVQNVNFLLKAEVQKLQALAKEQAAAAHEvekmQKSVHVKDDKIRLLEEQLQREVASRVEELKILNDQNKALQLEVQKLQ 720
Cdd:TIGR00618 380 HIHTLQQQKTTLTQKLQSLCKELDILQRE----QATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEK 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 721 AVVSEQpnkdvvEQMKKCIQEKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKEVQELKAKQMD------QVPF 794
Cdd:TIGR00618 456 LEKIHL------QESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDidnpgpLTRR 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 795 VSLIED----LKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEILKEEIGNAQLEKAHQLSVT--------S 862
Cdd:TIGR00618 530 MQRGEQtyaqLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTeklseaedM 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 863 QVQELQNLLRGKEEQVDSMKAALEDlTGREKCTQVCSTPRFEELENVLKEKDNEIKRieAILKDTKSDLSKKAELLKEVQ 942
Cdd:TIGR00618 610 LACEQHALLRKLQPEQDLQDVRLHL-QQCSQELALKLTALHALQLTLTQERVREHAL--SIRVLPKELLASRQLALQKMQ 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 943 DENKLFKSQVEQLNHQNHqqasfpSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNERQQQVEAvelESKDLLK 1022
Cdd:TIGR00618 687 SEKEQLTYWKEMLAQCQT------LLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMH---QARTVLK 757
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1023 RLfpavsvpshsnYSEWLRSFEKKAKACMAGPSDTEAVKVLEHRLKEANEMHTLLQLECEKYKSVLAETEGILQKLQRSV 1102
Cdd:TIGR00618 758 AR-----------TEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETL 826
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958681440 1103 EQEESKWKVKAEESRRTIQQMqssftasEQELERLRHENKAMENLRREREHLEIELEKAEVERSTYVM 1170
Cdd:TIGR00618 827 VQEEEQFLSRLEEKSATLGEI-------THQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGINQIKIQ 887
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
603-1188 |
1.36e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 46.43 E-value: 1.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 603 LAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQ---ELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQ---KS 676
Cdd:PRK01156 188 LEEKLKSSNLELENIKKQIADDEKSHSITLKEIERlsiEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAEsdlSM 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 677 VHVKDDKIRLLEEQLQR-----EVASRVEELKILNDQNKALQLevqklqavvseqpnKDVVEQMKKCIQEKDEKLRTVEE 751
Cdd:PRK01156 268 ELEKNNYYKELEERHMKiindpVYKNRNYINDYFKYKNDIENK--------------KQILSNIDAEINKYHAIIKKLSV 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 752 LletgliqvATREEELNAIRTENSSLTKEVQELKAKQMDQVPFVSLIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEK 831
Cdd:PRK01156 334 L--------QKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPD 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 832 TVQALKQEIEILKEEIgnaqlekahqlsvTSQVQELQNLLRGKEEQVDSMKAALEDLTGREKCTQVCSTPRFEELENVLK 911
Cdd:PRK01156 406 AIKKELNEINVKLQDI-------------SSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSNHIIN 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 912 EKDNEIKRIEAILKDTKSDLSKKAELLKEVQD-ENKLFKSQVEQLNHQNHQQASFPSQ----EELQTVISEKEKEITDLC 986
Cdd:PRK01156 473 HYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKrKEYLESEEINKSINEYNKIESARADlediKIKINELKDKHDKYEEIK 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 987 NELESLKnaVEHQRKKNNE---------------RQQQVEAVELESKDLLKRLFP-AVSVPSHSNYSE-WLRSFEKKAKA 1049
Cdd:PRK01156 553 NRYKSLK--LEDLDSKRTSwlnalavislidietNRSRSNEIKKQLNDLESRLQEiEIGFPDDKSYIDkSIREIENEANN 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1050 CMAGPSDTEAVKVL--------EHRLKEANEMHTLLQLECEkYKSVLAETEGILQKLQRSVEQ---EESKWKVKAEESRR 1118
Cdd:PRK01156 631 LNNKYNEIQENKILieklrgkiDNYKKQIAEIDSIIPDLKE-ITSRINDIEDNLKKSRKALDDakaNRARLESTIEILRT 709
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1119 TIQQMQSSFTASEQELERLRHENKAMENLRREREHLEIELEKAEVERSTYVMEVRELKDLLTELQKKLDD 1188
Cdd:PRK01156 710 RINELSDRINDINETLESMKKIKKAIGDLKRLREAFDKSGVPAMIRKSASQAMTSLTRKYLFEFNLDFDD 779
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
399-599 |
1.55e-04 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 45.13 E-value: 1.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 399 SYQETQQMQMKFEQVREQMEAEIAHLKQENGiLRDAVSNTTNQLESKQS--------AELNKLRQDCGRLVSELNEKTGK 470
Cdd:pfam09787 5 AKQELADYKQKAARILQSKEKLIASLKEGSG-VEGLDSSTALTLELEELrqerdllrEEIQKLRGQIQQLRTELQELEAQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 471 LQQEGVQkknAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDL-------QSKFVAKENEVQSLHSKLTD--- 540
Cdd:pfam09787 84 QQEEAES---SREQLQELEEQLATERSARREAEAELERLQEELRYLEEELrrskatlQSRIKDREAEIEKLRNQLTSksq 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958681440 541 TLVSKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAAQTS 599
Cdd:pfam09787 161 SSSSQSELENRLHQLTETLIQKQTMLEALSTEKNSLVLQLERMEQQIKELQGEGSNGTS 219
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
470-755 |
2.37e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 45.66 E-value: 2.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 470 KLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLhsKLTDTLVSKQQLE 549
Cdd:PLN02939 64 KLQSNTDENGQLENTSLRTVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDF--QLEDLVGMIQNAE 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 550 QRLMQLmesEQKRASQEEsmqiQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSL---- 625
Cdd:PLN02939 142 KNILLL---NQARLQALE----DLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELlirg 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 626 ASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRLLEEQLqreVASRVEELKIL 705
Cdd:PLN02939 215 ATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKF---IVAQEDVSKLS 291
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1958681440 706 NDQNKALQLEVQKLQAVVSEQPNKdvVEQMKKCIQEKDEKLRTVEELLET 755
Cdd:PLN02939 292 PLQYDCWWEKVENLQDLLDRATNQ--VEKAALVLDQNQDLRDKVDKLEAS 339
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
544-1264 |
3.60e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.96 E-value: 3.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 544 SKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEElhKVIAEKDKQLKQTED 623
Cdd:pfam02463 216 KEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEE--KEKKLQEEELKLLAK 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 624 SLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVK---DDKIRLLEEQLQREVASRVE 700
Cdd:pfam02463 294 EEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKreaEEEEEEELEKLQEKLEQLEE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 701 ELKILNDQNKALQLEVQKLQAVVSEQPNKDVVEQmKKCIQEKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKE 780
Cdd:pfam02463 374 ELLAKKKLESERLSSAAKLKEEELELKSEEEKEA-QLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEE 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 781 VQELKAKQMDQVPFVSLIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEILKEEIGNAQLEKAHQLSV 860
Cdd:pfam02463 453 LEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLG 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 861 TSQVQ-ELQNLLRGKEEQVDSMKAALEDLTGREKCTQVCSTPRFEELENVLKEKDNEIKRieailkdtkSDLSKKAELLK 939
Cdd:pfam02463 533 DLGVAvENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLK---------SIAVLEIDPIL 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 940 EVQDENKLFKSQVEQLNHQNHQQASFPSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNERQQQVEAVELESKD 1019
Cdd:pfam02463 604 NLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQE 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1020 LLKRLFPAVSVPSHSNYSEWLRSFEKKAKACMAGPSDTEAVKVLEHRLKEANEMHTLLQLECEKYKSVLAETEGILQKLQ 1099
Cdd:pfam02463 684 KAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKE 763
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1100 RSVEQEESKWKVKAEESRRTIQQMQSSF-TASEQELERLRHENKAMENLRREREHLEIELEKAEVERSTyvmEVRELKDL 1178
Cdd:pfam02463 764 EEKSELSLKEKELAEEREKTEKLKVEEEkEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKE---EELEELAL 840
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1179 LTELQKKLDDSYSEAVRQNEELNLLKTQLNETHSKLQnEQTERKKVADDLHKAQQSLNFIHSKISLKAAGDTVVIENNDI 1258
Cdd:pfam02463 841 ELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEE-ELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEI 919
|
....*.
gi 1958681440 1259 SPEMSE 1264
Cdd:pfam02463 920 EERIKE 925
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
669-1196 |
4.56e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 4.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 669 EVEKMQKSVHVKDDKIRLLEEQLQREVASRVEELKILNDQNKALQLEVQKLQAVVseqpnkdvvEQMKKCIQEKDEKLRT 748
Cdd:COG4717 50 RLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEEL---------EELEAELEELREELEK 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 749 VEELletglIQVATREEELNAIRTENSSLTKEVQELKAKQMDQVPFVSLIEDLKKVIHEKDGQIKSVEELLEVEllkvan 828
Cdd:COG4717 121 LEKL-----LQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLA------ 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 829 KEKTVQALKQEIEILKEEIGNAQlekahqlsvtSQVQELQNLLRGKEEQVDSMKAALEDLTGREKCTQVCSTPR-FEELE 907
Cdd:COG4717 190 TEEELQDLAEELEELQQRLAELE----------EELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLiAAALL 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 908 NVLKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQDENKLFKSQVEQLNHQNHQQASfpSQEELQTVISEKEKEITDLCN 987
Cdd:COG4717 260 ALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEEL--EEEELEELLAALGLPPDLSPE 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 988 ELESLKNAVEHQRKKNNERQQQVEAVELES-KDLLKRLFPAVSVPSHSNYSEWLRSFEKKAKAcmagpsdTEAVKVLEHR 1066
Cdd:COG4717 338 ELLELLDRIEELQELLREAEELEEELQLEElEQEIAALLAEAGVEDEEELRAALEQAEEYQEL-------KEELEELEEQ 410
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1067 LKEANEmhtllqlecekyksvlaetegilQKLQRSVEQEESKWKVKAEESRRTIQQMQSSFTASEQELERLRHENKAMEN 1146
Cdd:COG4717 411 LEELLG-----------------------ELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEE 467
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958681440 1147 ------LRREREHLEIELEKAEVERSTYVMevreLKDLLTELQKKLDDSYSEAVRQ 1196
Cdd:COG4717 468 dgelaeLLQELEELKAELRELAEEWAALKL----ALELLEEAREEYREERLPPVLE 519
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
413-590 |
4.58e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.62 E-value: 4.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 413 VREQMEAEIAHLKQENGILRDAVSNTTNQLESKQsAELNKLRQDCGrlVSELNEKTGKLQQegvQKKNAEQAAAQLKVQL 492
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAE-AALEEFRQKNG--LVDLSEEAKLLLQ---QLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 493 QEAERRWEEVQSYI-------------------RKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLM 553
Cdd:COG3206 236 AEAEARLAALRAQLgsgpdalpellqspviqqlRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRIL 315
|
170 180 190
....*....|....*....|....*....|....*..
gi 1958681440 554 QLMESEQkrasqeESMQIQVQDILEQNEALKAQIQQF 590
Cdd:COG3206 316 ASLEAEL------EALQAREASLQAQLAQLEARLAEL 346
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
831-1234 |
4.64e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 4.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 831 KTVQALKQEIEILKEEIGNAQLEKAHQLSVTSQVQELQNLLRGKEEQVDSMKAALEDLTGREKCTQVCStpRFEELENVL 910
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQ--ELEALEAEL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 911 KEKDNEIKRIEAILKDTKSDLSKKAELLKEVQDENKLFKSQVEQLNHQNHQQASFPSQ--EELQTVISEKEKEITDLCNE 988
Cdd:COG4717 142 AELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEelEELQQRLAELEEELEEAQEE 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 989 LESLKNAVEhqrKKNNERQQQVEAVELESKDLLKRLFPAVSVPSHSNYSEWLRSFEKKAKACMAGPSDTEAVKVLEHRLK 1068
Cdd:COG4717 222 LEELEEELE---QLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKA 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1069 EANEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKVKAEESRRtIQQMQSSFTASEQELERLRHENKAMENLR 1148
Cdd:COG4717 299 SLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEE-LQELLREAEELEEELQLEELEQEIAALLA 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1149 REREHLEIELEKAEVERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQN-----EELNLLKTQLNETHSKLQNEQTERKK 1223
Cdd:COG4717 378 EAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDeeeleEELEELEEELEELEEELEELREELAE 457
|
410
....*....|.
gi 1958681440 1224 VADDLHKAQQS 1234
Cdd:COG4717 458 LEAELEQLEED 468
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1063-1235 |
5.39e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 5.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1063 LEHRLKEANE-MHTLLQLE--CEKYKSvLAETEGILQKLQRSV-----EQEESKWKVKAEESRRTIQQMQSSFTASEQEL 1134
Cdd:COG4913 240 AHEALEDAREqIELLEPIRelAERYAA-ARERLAELEYLRAALrlwfaQRRLELLEAELEELRAELARLEAELERLEARL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1135 ERLRHENKAMENLRRER-----EHLEIELEKAEVERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNE 1209
Cdd:COG4913 319 DALREELDELEAQIRGNggdrlEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEE 398
|
170 180
....*....|....*....|....*.
gi 1958681440 1210 THSKLQNEQTERKKVADDLHKAQQSL 1235
Cdd:COG4913 399 ELEALEEALAEAEAALRDLRRELREL 424
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
477-686 |
6.27e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 6.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 477 QKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQ---DLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLM 553
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERriaALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 554 QLME--SEQKRASQEESMQIQVQDILEQ----------------NEALKAQIQQFHSQIAA----QTSASVLAEELHKVI 611
Cdd:COG4942 101 AQKEelAELLRALYRLGRQPPLALLLSPedfldavrrlqylkylAPARREQAEELRADLAElaalRAELEAERAELEALL 180
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958681440 612 AEKDKQLKQTEDSLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRL 686
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGKL 255
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
437-726 |
6.33e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.96 E-value: 6.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 437 NTTNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQ---EAERRWEEVQSYIRKRtaEH 513
Cdd:pfam17380 285 SERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERmamERERELERIRQEERKR--EL 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 514 EAAQQDLQSKFVAKENEVQSLHskltdtlVSKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQiQQFHSQ 593
Cdd:pfam17380 363 ERIRQEEIAMEISRMRELERLQ-------MERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAE-QEEARQ 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 594 IAAQTSASVLAEELHKVIAEKDKQLKQTEDSLASEQDHLASK--------EQELKDVQNVNFL---LKAEVQKLQALAKE 662
Cdd:pfam17380 435 REVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKlelekekrDRKRAEEQRRKILekeLEERKQAMIEEERK 514
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958681440 663 QAAAAHEVEKMQKSVHvKDDKIRLLEEQLQREVasRVEELKILNDQNKALQLEVQKLQAVVSEQ 726
Cdd:pfam17380 515 RKLLEKEMEERQKAIY-EEERRREAEEERRKQQ--EMEERRRIQEQMRKATEERSRLEAMERER 575
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
798-1002 |
6.77e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 6.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 798 IEDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEILKEEIGNAQLEKAH-QLSVTSQVQELQNLLRG--K 874
Cdd:COG4942 36 IAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAElRAELEAQKEELAELLRAlyR 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 875 EEQVDSMKAAL--EDLTGREKCTQVcstprFEELENVLKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQDENKLFKSQV 952
Cdd:COG4942 116 LGRQPPLALLLspEDFLDAVRRLQY-----LKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAAL 190
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1958681440 953 EQL-NHQNHQQASFPSQE-ELQTVISEKEKEITDLCNELESLKNAVEHQRKK 1002
Cdd:COG4942 191 EALkAERQKLLARLEKELaELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
414-655 |
7.93e-04 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 44.05 E-value: 7.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 414 REQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNK--------LRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAA 485
Cdd:NF012221 1564 KERAEADRQRLEQEKQQQLAAISGSQSQLESTDQNALETngqaqrdaILEESRAVTKELTTLAQGLDALDSQATYAGESG 1643
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 486 AQLKVQLqeAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKlTDTLVskQQLEQRLMQLMESEQKRASQ 565
Cdd:NF012221 1644 DQWRNPF--AGGLLDRVQEQLDDAKKISGKQLADAKQRHVDNQQKVKDAVAK-SEAGV--AQGEQNQANAEQDIDDAKAD 1718
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 566 EESMQIQVqdILEQNEALKAQIQQFHS----QIAAQTSASVLAEELHKVIAEKdKQLKQTEDSLASEQ----DHLASKEQ 637
Cdd:NF012221 1719 AEKRKDDA--LAKQNEAQQAESDANAAandaQSRGEQDASAAENKANQAQADA-KGAKQDESDKPNRQgaagSGLSGKAY 1795
|
250
....*....|....*...
gi 1958681440 638 ELKDVQNVNFLLKAEVQK 655
Cdd:NF012221 1796 SVEGVAEPGSHINPDSPA 1813
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1053-1236 |
8.23e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 8.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1053 GPSDTEAVKVLEHRLKEANEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKwkVKAEESRRTIQQMqssftasEQ 1132
Cdd:COG4913 605 GFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDE--IDVASAEREIAEL-------EA 675
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1133 ELERLRHENKAMENLRREREHLEIELEKAEVERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHS 1212
Cdd:COG4913 676 ELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERF 755
|
170 180
....*....|....*....|....
gi 1958681440 1213 KLQNEQTERKKVADDLHKAQQSLN 1236
Cdd:COG4913 756 AAALGDAVERELRENLEERIDALR 779
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
414-534 |
1.00e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 1.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 414 REQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQDCGRLVSELNEKTGK-------LQQEGVQKKNAEQAAA 486
Cdd:COG4913 304 LARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRrarlealLAALGLPLPASAEEFA 383
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1958681440 487 QLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSL 534
Cdd:COG4913 384 ALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASL 431
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
322-534 |
1.00e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 1.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 322 KKSNKGELSGLLHQLQEKERLLTATKEDAAATKERCKQLTQEMmtekerssvvmARMKERIGTLEKEHNIFQNKMHVSYQ 401
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRI-----------AALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 402 ETQQMQMKFEQVREQMEAEIAHLKQENGI-----------LRDAVSNTT--NQLESKQSAELNKLRQDcgrlVSELNEKT 468
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQpplalllspedFLDAVRRLQylKYLAPARREQAEELRAD----LAELAALR 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958681440 469 GKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSL 534
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
411-599 |
1.05e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 411 EQVREQM---EAEIAHLKQENGILrdAVSNTTNQLESKQS---AELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQA 484
Cdd:COG3206 185 PELRKELeeaEAALEEFRQKNGLV--DLSEEAKLLLQQLSeleSQLAEARAELAEAEARLAALRAQLGSGPDALPELLQS 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 485 AA--QLKVQLQEAERRWEE-----------VQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQR 551
Cdd:COG3206 263 PViqQLRAQLAELEAELAElsarytpnhpdVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEAR 342
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1958681440 552 LMQLMESEQKRASQEESMQIQvQDILEQneaLKAQIQQFHSQIAAQTS 599
Cdd:COG3206 343 LAELPELEAELRRLEREVEVA-RELYES---LLQRLEEARLAEALTVG 386
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
426-855 |
1.09e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 43.13 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 426 QENGILRDAVSNTTNQLEskqsaELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERrweevqsy 505
Cdd:pfam19220 3 QRNELLRVRLGEMADRLE-----DLRSLKADFSQLIEPIEAILRELPQAKSRLLELEALLAQERAAYGKLRR-------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 506 irkrtaeheaaqqdlqskfvakenEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKA 585
Cdd:pfam19220 70 ------------------------ELAGLTRRLSAAEGELEELVARLAKLEAALREAEAAKEELRIELRDKTAQAEALER 125
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 586 QIQQFHSQIAAqtsasvLAEELhkviAEKDKQLKQTEDSLASeqdhlasKEQELKDVQNVNFLLKAEVQKLQALAKEQAA 665
Cdd:pfam19220 126 QLAAETEQNRA------LEEEN----KALREEAQAAEKALQR-------AEGELATARERLALLEQENRRLQALSEEQAA 188
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 666 AAHEVEK----MQKSVHVKDDKIRLLEEQLQREVASRVEELKILNDQNKALQLEV----QKLQAVVSEQPNKDVV-EQMK 736
Cdd:pfam19220 189 ELAELTRrlaeLETQLDATRARLRALEGQLAAEQAERERAEAQLEEAVEAHRAERaslrMKLEALTARAAATEQLlAEAR 268
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 737 KCIQEKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKEVQELKAKQMDqvpFVSLIEDLKKVIHEKDGQIKSVE 816
Cdd:pfam19220 269 NQLRDRDEAIRAAERRLKEASIERDTLERRLAGLEADLERRTQQFQEMQRARAE---LEERAEMLTKALAAKDAALERAE 345
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 1958681440 817 ELLEVELLKVANKEKTV----QALKQEIEILKEEIGNAQLEKA 855
Cdd:pfam19220 346 ERIASLSDRIAELTKRFeverAALEQANRRLKEELQRERAERA 388
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
462-643 |
1.16e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.89 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 462 SELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQskfvAKENEVQSLHSKLTDT 541
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIA----EAEAEIEERREELGER 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 542 LVSKQQ---LEQRLMQLMESEQ-----KRASQEESMQIQVQDILEQNEALKAQIQQFHSQI--------AAQTSASVLAE 605
Cdd:COG3883 92 ARALYRsggSVSYLDVLLGSESfsdflDRLSALSKIADADADLLEELKADKAELEAKKAELeaklaeleALKAELEAAKA 171
|
170 180 190
....*....|....*....|....*....|....*...
gi 1958681440 606 ELHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQ 643
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAE 209
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
594-754 |
1.41e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.92 E-value: 1.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 594 IAAQTSASVLAEELHKVIAEKDKQlkqTEDSLASEQDHLASKEQELKDvqnvnflLKAEVQKLQalakeqaaaaHEVEKM 673
Cdd:COG2433 373 IRGLSIEEALEELIEKELPEEEPE---AEREKEHEERELTEEEEEIRR-------LEEQVERLE----------AEVEEL 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 674 QKSVHVKDDKIRLLEEQLQRevASRVEELKILNDQnkalqlEVQKLQAvvseqpnkdVVEQMKKCIQEKDEKLRTVEELL 753
Cdd:COG2433 433 EAELEEKDERIERLERELSE--ARSEERREIRKDR------EISRLDR---------EIERLERELEEERERIEELKRKL 495
|
.
gi 1958681440 754 E 754
Cdd:COG2433 496 E 496
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
508-729 |
1.71e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 508 KRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQEESMQIQVQDILEQNEALKAQI 587
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 588 QQFHSQIAAQTSASVLAEELHKV--------IAEKDKQLKQTEDSLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQAL 659
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLalllspedFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 660 AKEQAAAAHEVEKMQKSVhvkddkiRLLEEQLQREVASRVEELKILNDQNKALQLEVQKLQAVVSEQPNK 729
Cdd:COG4942 180 LAELEEERAALEALKAER-------QKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
739-940 |
2.18e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 2.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 739 IQEKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKEVQELKAKQMDQvpfVSLIEDLKKVIHEKDGQIKSveel 818
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRL---ELEIEEVEARIKKYEEQLGN---- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 819 levellkvANKEKTVQALKQEIEILKEEIgnAQLEKaHQLSVTSQVQELQNLLRGKEEQVDSMKAALEDLTgrekctqvc 898
Cdd:COG1579 85 --------VRNNKEYEALQKEIESLKRRI--SDLED-EILELMERIEELEEELAELEAELAELEAELEEKK--------- 144
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1958681440 899 stprfEELENVLKEKDNEIKRIEAILKDTKSDLSkkAELLKE 940
Cdd:COG1579 145 -----AELDEELAELEAELEELEAEREELAAKIP--PELLAL 179
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
477-596 |
2.40e-03 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 41.57 E-value: 2.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 477 QKKNAEQAAAQLKVQLQEAERRwEEVQSYIRKRTAEHEAAQQDLQskfvAKENEVQSLHSKLTDTLVSKQQLEQRLMQLM 556
Cdd:COG1566 84 ALAQAEAQLAAAEAQLARLEAE-LGAEAEIAAAEAQLAAAQAQLD----LAQRELERYQALYKKGAVSQQELDEARAALD 158
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1958681440 557 ESEQKRASQEESMQIQVQDILEQNE--ALKAQIQQFHSQIAA 596
Cdd:COG1566 159 AAQAQLEAAQAQLAQAQAGLREEEElaAAQAQVAQAEAALAQ 200
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1049-1235 |
2.60e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 2.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1049 ACMAGPSDTEAVKVLEHRLKEANEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKV---KAEESRRTIQQMQS 1125
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRAleqELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1126 SFTASEQELERLRHE-NKAMENLRREREHLEIEL-----EKAEVERSTYVME--VRELKDLLTEL---QKKLDDSYSEAV 1194
Cdd:COG4942 91 EIAELRAELEAQKEElAELLRALYRLGRQPPLALllspeDFLDAVRRLQYLKylAPARREQAEELradLAELAALRAELE 170
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1958681440 1195 RQNEELNLLKTQLNETHSKLQNEQTERKKVADDLHKAQQSL 1235
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAEL 211
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
332-1024 |
2.71e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.27 E-value: 2.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 332 LLHQLQEKERLLTATKEDAAATKERCKQLTQEMMTEKERSSVVMARMKERIGTLEKEhnifqnKMHVSYQETQQMQMKFE 411
Cdd:pfam02463 228 YLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQ------EEELKLLAKEEEELKSE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 412 QVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQ 491
Cdd:pfam02463 302 LLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 492 LQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQEESMQI 571
Cdd:pfam02463 382 ESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLL 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 572 QVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQELKDVQNVNFLLKA 651
Cdd:pfam02463 462 KDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENY 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 652 EVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIRLLEEQLQREVASRVEELKILNDQNKALQLEVQKLQAVVSEQP-NKD 730
Cdd:pfam02463 542 KVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEdDKR 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 731 VVEQMKKCIQEKDEKLRTVEELLETGLIQVATREEELNAIRTENSSLTKEVQELKAKQMDQVPFVSLIEDLKKVIHEKDG 810
Cdd:pfam02463 622 AKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEI 701
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 811 QIKSVEELLEVELLKVAnKEKTVQALKQEIEILKEEIGNAQLEKAHQLSvtsqvQELQNLLRGKEEQVDSMKAALEDLTG 890
Cdd:pfam02463 702 KKKEQREKEELKKLKLE-AEELLADRVQEAQDKINEELKLLKQKIDEEE-----EEEEKSRLKKEEKEEEKSELSLKEKE 775
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 891 REKCTqvcstpRFEELENVLKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQDENKLFKSQVEQLNHQNHQ--QASFPSQ 968
Cdd:pfam02463 776 LAEER------EKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALelKEEQKLE 849
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958681440 969 EELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNERQQQVEAVELESKDLLKRL 1024
Cdd:pfam02463 850 KLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEE 905
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
825-1251 |
2.72e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.26 E-value: 2.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 825 KVANKEKTVQALKQEIEILKEEIGNAQLEKAHQLSVTSQVQELQNLLRgKEEQVDSMKAALEDLtgREKCTQVCSTPRFE 904
Cdd:TIGR00618 220 RKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRA-RIEELRAQEAVLEET--QERINRARKAAPLA 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 905 ELENVLKEKDNEIKRIEAILKDTKSDLSK-----------KAELLKEVQDENKLFkSQVEQLNHQNHQQASFPSQEELQT 973
Cdd:TIGR00618 297 AHIKAVTQIEQQAQRIHTELQSKMRSRAKllmkraahvkqQSSIEEQRRLLQTLH-SQEIHIRDAHEVATSIREISCQQH 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 974 VISEKEKEITDLCNELESLKNAVEHQRKKNNERQQQVEAVELESKDLLKRLFPA-VSVPSHSNYSEWLRSFEKKAKAC-- 1050
Cdd:TIGR00618 376 TLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAkKQQELQQRYAELCAAAITCTAQCek 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1051 MAGPSDTEAVKVLEHRLKEANEMHTLLQLECEKYKSVLAETEgILQKLQRSVEQEESKWKVKAEES------RRTIQQMQ 1124
Cdd:TIGR00618 456 LEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLL-ELQEEPCPLCGSCIHPNPARQDIdnpgplTRRMQRGE 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1125 SSFTASEQELERLRH----ENKAMENLRREREHLEIELEKAEVERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEEL 1200
Cdd:TIGR00618 535 QTYAQLETSEEDVYHqltsERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQ 614
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 1958681440 1201 NLLKTQLNETHSKLQNEQTERKKVADD----LHKAQQSLNFIHSKISLKAAGDTV 1251
Cdd:TIGR00618 615 HALLRKLQPEQDLQDVRLHLQQCSQELalklTALHALQLTLTQERVREHALSIRV 669
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
613-1024 |
3.87e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.68 E-value: 3.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 613 EKDKQLKQTEDSLASEQDHLASKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAhEVEKMQKSVHVKDDKIRLLEEQLQ 692
Cdd:COG4717 78 EELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQ-ELEALEAELAELPERLEELEERLE 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 693 rEVASRVEELKILNDQNKALQLEVQKLQAVVSEQpNKDVVEQMKKCIQEKDEKLRTVEELLETGLIQVATREEELNAIRT 772
Cdd:COG4717 157 -ELRELEEELEELEAELAELQEELEELLEQLSLA-TEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLEN 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 773 ENSSLtKEVQELKAKQMDQVPFVSLIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEILKEEIGNAQL 852
Cdd:COG4717 235 ELEAA-ALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPAL 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 853 EKAHQLSVTSQVQELQNLLRGKEEQVDSMKAALEDLtgREKCTQVCSTPRFEELENVLKEKDNEIKRIEAILKDTKSDLS 932
Cdd:COG4717 314 EELEEEELEELLAALGLPPDLSPEELLELLDRIEEL--QELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAAL 391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 933 KKAELLKEVQDENKLFKSQVEQLNHQNHQQASFPSQEELQTVISEKEKEITDLCNELESLKNAVE--HQRKKNNERQQQV 1010
Cdd:COG4717 392 EQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAelEAELEQLEEDGEL 471
|
410
....*....|....
gi 1958681440 1011 EAVELESKDLLKRL 1024
Cdd:COG4717 472 AELLQELEELKAEL 485
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
830-1009 |
5.52e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 5.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 830 EKTVQALKQEIEILKEEIGNAQlekahqlsvtSQVQELQNLLRGKEEQVDSMKAALEDLTGREKctqvcstprfEELENV 909
Cdd:COG4913 287 QRRLELLEAELEELRAELARLE----------AELERLEARLDALREELDELEAQIRGNGGDRL----------EQLERE 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 910 LKEKDNEIKRIEAILKDTKSDLSK-------KAELLKEVQDENKLFKSQVEQLNHQNHQQASfpsqeELQTVISEKEKEI 982
Cdd:COG4913 347 IERLERELEERERRRARLEALLAAlglplpaSAEEFAALRAEAAALLEALEEELEALEEALA-----EAEAALRDLRREL 421
|
170 180
....*....|....*....|....*..
gi 1958681440 983 TDLCNELESLKnavehQRKKNNERQQQ 1009
Cdd:COG4913 422 RELEAEIASLE-----RRKSNIPARLL 443
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
945-1204 |
5.77e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 40.77 E-value: 5.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 945 NKLFKSQVEQLNHQ--------NHQQASFPSQEELQTVISEKEKE-ITDLCNELESLKNAVEHQRKKNNERQQQVEAVEL 1015
Cdd:PHA02562 169 DKLNKDKIRELNQQiqtldmkiDHIQQQIKTYNKNIEEQRKKNGEnIARKQNKYDELVEEAKTIKAEIEELTDELLNLVM 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1016 ESKDLlkrlfpavsvpshSNYSEWLRSFEKKAKACMagpsdtEAVKVLEHRLKEANEMHTLLQ-LE-----CEKYKSVLA 1089
Cdd:PHA02562 249 DIEDP-------------SAALNKLNTAAAKIKSKI------EQFQKVIKMYEKGGVCPTCTQqISegpdrITKIKDKLK 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1090 ETEGILQKLQRSVEQEESKwKVKAEESRRTIQQMQSSFTASEQELERLRHENKAmenlrrerehLEIELEKAEVERSTYV 1169
Cdd:PHA02562 310 ELQHSLEKLDTAIDELEEI-MDEFNEQSKKLLELKNKISTNKQSLITLVDKAKK----------VKAAIEELQAEFVDNA 378
|
250 260 270
....*....|....*....|....*....|....*
gi 1958681440 1170 MEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLK 1204
Cdd:PHA02562 379 EELAKLQDELDKIVKTKSELVKEKYHRGIVTDLLK 413
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
442-887 |
6.45e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 6.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 442 LESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAAQLKVQLQEAERRWEEVQSYI-----RKRTAEHEAA 516
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELeelreELEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 517 QQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASQEESMQIQVQDI-LEQNEALKAQIQQFHSQIA 595
Cdd:COG4717 127 LLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLsLATEEELQDLAEELEELQQ 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 596 AQTSASVLAEELHKVIAEKDKQLKQTEDSLASEQDhlaskEQELKDVQNVNFLLkAEVQKLQALAKEQAAAAHEVEKMQK 675
Cdd:COG4717 207 RLAELEEELEEAQEELEELEEELEQLENELEAAAL-----EERLKEARLLLLIA-AALLALLGLGGSLLSLILTIAGVLF 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 676 SVHVKDDKIRLLEEQLQREVASRVEELKILNDQNKALQLEVQKLQAV--VSEQPNKDVVEQMKKCIQEKDEKLRTVEELL 753
Cdd:COG4717 281 LVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAAlgLPPDLSPEELLELLDRIEELQELLREAEELE 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 754 ETglIQVATREEELNAIRTENSSLTKEVQELKAKQMDQvpFVSLIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEktV 833
Cdd:COG4717 361 EE--LQLEELEQEIAALLAEAGVEDEEELRAALEQAEE--YQELKEELEELEEQLEELLGELEELLEALDEEELEEE--L 434
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958681440 834 QALKQEIEILKEEIGNAQLEKA---HQLSVTSQVQELQNLLRGKEEQVDSMKAALED 887
Cdd:COG4717 435 EELEEELEELEEELEELREELAeleAELEQLEEDGELAELLQELEELKAELRELAEE 491
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
479-1011 |
6.71e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 6.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 479 KNAEQAAAQLKvQLQEAERRWEEVQSyIRKRTAEHEAAQQDLQSKFVAKEneVQSLHSKLTDTLVSKQQLEQRLMQLMES 558
Cdd:COG4913 242 EALEDAREQIE-LLEPIRELAERYAA-ARERLAELEYLRAALRLWFAQRR--LELLEAELEELRAELARLEAELERLEAR 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 559 EQKRASQEESMQIQVQDI-LEQNEALKAQIQQFHSQIAAQTSAsvlAEELHKVIAEKDKQLKQTEDSLASEQ----DHLA 633
Cdd:COG4913 318 LDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERR---RARLEALLAALGLPLPASAEEFAALRaeaaALLE 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 634 SKEQELKDVQNVNFLLKAEVQKLQALAKEQAAAAHEVEKMQKSVHVKDDKIR-LLEEQLQR------------EVASR-- 698
Cdd:COG4913 395 ALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRdALAEALGLdeaelpfvgeliEVRPEee 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 699 ------------------VEE------LKILNDQNKALQLEVQKLQAVVSEQPNKDVVEQ-MKKCIQEKDEKLRT-VEEL 752
Cdd:COG4913 475 rwrgaiervlggfaltllVPPehyaaaLRWVNRLHLRGRLVYERVRTGLPDPERPRLDPDsLAGKLDFKPHPFRAwLEAE 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 753 L--ETGLIQVATrEEELnaiRTENSSLTKEVQelkAKQmdqvpfvsliedlKKVIHEKDGQ--IKSVEELLEVELLKVAN 828
Cdd:COG4913 555 LgrRFDYVCVDS-PEEL---RRHPRAITRAGQ---VKG-------------NGTRHEKDDRrrIRSRYVLGFDNRAKLAA 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 829 KEKTVQALKQEIEILKEEIGNAQLE------KAHQLSVTSQVQELQNLLRGKEEQVDSMKAALEDLTGrekctqvcSTPR 902
Cdd:COG4913 615 LEAELAELEEELAEAEERLEALEAEldalqeRREALQRLAEYSWDEIDVASAEREIAELEAELERLDA--------SSDD 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 903 FEELENVLKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQDENKLFKSQVEQLNHQNHQQASFPSQEELQTVISEK-EKE 981
Cdd:COG4913 687 LAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAvERE 766
|
570 580 590
....*....|....*....|....*....|
gi 1958681440 982 ItdlcneLESLKNAVEHQRKKNNERQQQVE 1011
Cdd:COG4913 767 L------RENLEERIDALRARLNRAEEELE 790
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
681-1173 |
6.71e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.79 E-value: 6.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 681 DDKIRLLEEQLQREVASRVEELKILNDQNKALQ------LEVQKLQAVVSEQPNKDvvEQMKKCIQEKDEKLRTVEELLE 754
Cdd:PRK02224 219 DEEIERYEEQREQARETRDEADEVLEEHEERREeletleAEIEDLRETIAETERER--EELAEEVRDLRERLEELEEERD 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 755 TGLIQVATREEELNAIRTENSSLTKEVQELKAKQMDQVPFVSL-----------IEDLKKVIHEKDGQIKSVEELLEVEL 823
Cdd:PRK02224 297 DLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAhneeaeslredADDLEERAEELREEAAELESELEEAR 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 824 LKVANKEKTVQALKQEIEILKEEIGNA--QLEKAHQLS---------VTSQVQELQNLLRGKEEQVDSMKAALEDLTGRE 892
Cdd:PRK02224 377 EAVEDRREEIEELEEEIEELRERFGDApvDLGNAEDFLeelreerdeLREREAELEATLRTARERVEEAEALLEAGKCPE 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 893 KCTQVCSTPRFEELEnvlkEKDNEIKRIEAILKDTKSDLSKKAELLKEVQDENKLfKSQVEQLnhQNHQQASFPSQEELQ 972
Cdd:PRK02224 457 CGQPVEGSPHVETIE----EDRERVEELEAELEDLEEEVEEVEERLERAEDLVEA-EDRIERL--EERREDLEELIAERR 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 973 TVISEKEKEITDLCNELESLKNAVEHQRKKNNERQQQVEAVELESKDLLKRLfpavsvpshSNYSEWLRSFEKKAKACMA 1052
Cdd:PRK02224 530 ETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKL---------AELKERIESLERIRTLLAA 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1053 GPSDTEAVKVLEHRLKEANEMHTLL------------QLECEKYKSVLAETEGILQKLQRSVEQEESKWKVKAEEsRRTI 1120
Cdd:PRK02224 601 IADAEDEIERLREKREALAELNDERrerlaekrerkrELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREE-RDDL 679
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 1958681440 1121 QQMQSSFTASEQELERLRHENKAMENlrrEREHLEIELEKAEVERSTYvMEVR 1173
Cdd:PRK02224 680 QAEIGAVENELEELEELRERREALEN---RVEALEALYDEAEELESMY-GDLR 728
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
323-528 |
6.78e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.87 E-value: 6.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 323 KSNKGELSGLLHQLQEKERLLTATKEDAAATKERCKQLTQEMMTEKERssvVMARMKERIGTLEKEHNIFQNkMHVSYQE 402
Cdd:pfam15921 649 KDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNK---LKMQLKSAQSELEQTRNTLKS-MEGSDGH 724
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 403 TQQMQMKFEQVREQMEAEIAHLKQENGILRDAVSNTtNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAE 482
Cdd:pfam15921 725 AMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNA-NKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLK 803
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1958681440 483 QAAAQLKVQLQEAERRWEEVQSYIRKRtaEHEAAQQDLQSKFVAKE 528
Cdd:pfam15921 804 EKVANMEVALDKASLQFAECQDIIQRQ--EQESVRLKLQHTLDVKE 847
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
480-693 |
7.12e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 7.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 480 NAEQAAAQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQ-----SKFVAKENEVQSLHSKLtdtlvskQQLEQRLMQ 554
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREalqrlAEYSWDEIDVASAEREI-------AELEAELER 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 555 LmeseqkRASQEESMQIQvqdilEQNEALKAQIQQFHSQIaaqtsasvlaEELHKVIAEKDKQLKQTEDSLASEQDHLAS 634
Cdd:COG4913 680 L------DASSDDLAALE-----EQLEELEAELEELEEEL----------DELKGEIGRLEKELEQAEEELDELQDRLEA 738
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958681440 635 KEQElkDVQNVNFLLKAEVQKLQALAKEQAAaaheVEKMQKSVHVKDDKIRLLEEQLQR 693
Cdd:COG4913 739 AEDL--ARLELRALLEERFAAALGDAVEREL----RENLEERIDALRARLNRAEEELER 791
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
349-643 |
7.17e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.71 E-value: 7.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 349 DAAATKERCKQLTQEMMTEKERSSVVMAR----MKERIGTLEKEHNIFQ---NKMhvsyQETQQMQMKFEQVREQMEAEI 421
Cdd:COG3096 285 ERALELRRELFGARRQLAEEQYRLVEMAReleeLSARESDLEQDYQAASdhlNLV----QTALRQQEKIERYQEDLEELT 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 422 AHLKQENGILRDAVSNTTNQLESKQSAElnklrQDCGRLVSELNEKTGKL---QQEGVQKKNAEQAAAQLKVQLQEAERR 498
Cdd:COG3096 361 ERLEEQEEVVEEAAEQLAEAEARLEAAE-----EEVDSLKSQLADYQQALdvqQTRAIQYQQAVQALEKARALCGLPDLT 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 499 WEEVQSYIrkrtAEHEAAQQDLQSkfvakenEVQSLHSKLTDTLVSKQQLEQrLMQLME--------------------- 557
Cdd:COG3096 436 PENAEDYL----AAFRAKEQQATE-------EVLELEQKLSVADAARRQFEK-AYELVCkiageversqawqtarellrr 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 558 --SEQKRASQEESMQIQVQDI---LEQNEALKAQIQQFHSQIAAQTSAsvlAEELHKVIAEKDKQLKQTEDSLASEQDHL 632
Cdd:COG3096 504 yrSQQALAQRLQQLRAQLAELeqrLRQQQNAERLLEEFCQRIGQQLDA---AEELEELLAELEAQLEELEEQAAEAVEQR 580
|
330
....*....|.
gi 1958681440 633 ASKEQELKDVQ 643
Cdd:COG3096 581 SELRQQLEQLR 591
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
903-1181 |
7.95e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 7.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 903 FEELENVLKEKDnEIKRIEAILKDTKsdlsKKAELLKEVQDENKLFKSQVEQLNHQNHQQASFPSQEElQTVISEKEKEI 982
Cdd:COG4913 224 FEAADALVEHFD-DLERAHEALEDAR----EQIELLEPIRELAERYAAARERLAELEYLRAALRLWFA-QRRLELLEAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 983 TDLCNELESLKNAVEHQRKKNNERQQQVEAVELEskdllkrlfpavsvpshsnysewLRSfekkakacmagpSDTEAVKV 1062
Cdd:COG4913 298 EELRAELARLEAELERLEARLDALREELDELEAQ-----------------------IRG------------NGGDRLEQ 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1063 LEHRLKEANEmhtllqlECEKYKSVLAETEGILQKLQRSVEQEESKWkvkaEESRRTIQQMQSSFTASEQELERLRHENK 1142
Cdd:COG4913 343 LEREIERLER-------ELEERERRRARLEALLAALGLPLPASAEEF----AALRAEAAALLEALEEELEALEEALAEAE 411
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1958681440 1143 -AMENLRREREHLEIELEKAEVERSTYVMEVRELKDLLTE 1181
Cdd:COG4913 412 aALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAE 451
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
558-1182 |
9.08e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.42 E-value: 9.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 558 SEQKRASQEESMQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLASEQDHLASKEQ 637
Cdd:TIGR00606 166 SEGKALKQKFDEIFSATRYIKALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYEN 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 638 ELKDVQNVN----------FLLKAEVQKLQALAKEQAAAAHEVE-KMQKSVHVKDDKIRLLEEQLQREVASRVEELKILN 706
Cdd:TIGR00606 246 ELDPLKNRLkeiehnlskiMKLDNEIKALKSRKKQMEKDNSELElKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQ 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 707 DQNKALQLEVQKLQAVVSEQPNKDVVEQMK-KCIQEKDEKLRTVEELLETGLIQVATREEELNAIRTENS-SLTKEVQEL 784
Cdd:TIGR00606 326 RELEKLNKERRLLNQEKTELLVEQGRLQLQaDRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFhTLVIERQED 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 785 KAKQMDQvpfvsLIEDLKKVIHEKDGQIKSVEELLEVELLKVANKEktvQALKQEIEILKEEIGNAQLEKAHQLSVTSQV 864
Cdd:TIGR00606 406 EAKTAAQ-----LCADLQSKERLKQEQADEIRDEKKGLGRTIELKK---EILEKKQEELKFVIKELQQLEGSSDRILELD 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 865 QELQNLLRgkEEQVDSMKAALEDLTGREKCTQvcstprfEELENVLKEKDNEIKRIEAILKDTKSDLSKKAELLKEVQDE 944
Cdd:TIGR00606 478 QELRKAER--ELSKAEKNSLTETLKKEVKSLQ-------NEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKD 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 945 NKLFKSQVEQLNHQNHQQASFPSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNERQQQVEAVELESKDLLKRL 1024
Cdd:TIGR00606 549 EQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKL 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1025 FPAVSVPSHSNYSEWLRSFEKKAKACMAGPSDTEAvkVLEHRLKEANEMHTLLQLECEKYKSVLAETEGILQKLQRSV-- 1102
Cdd:TIGR00606 629 FDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATA--VYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLrl 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958681440 1103 ---EQEESKWKVKAEESRRTI-----QQMQSSFTASEQELERLRHENKameNLRREREHLEIELEKAEVERSTYVMEVRE 1174
Cdd:TIGR00606 707 apdKLKSTESELKKKEKRRDEmlglaPGRQSIIDLKEKEIPELRNKLQ---KVNRDIQRLKNDIEEQETLLGTIMPEEES 783
|
....*...
gi 1958681440 1175 LKDLLTEL 1182
Cdd:TIGR00606 784 AKVCLTDV 791
|
|
| |
