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Conserved domains on  [gi|1958683478|ref|XP_038950346|]
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transmembrane protein 255B isoform X5 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FAM70 super family cl25933
FAM70 protein; This family of proteins is found in eukaryotes. Proteins in this family are ...
 101-244 1.48e-109

FAM70 protein; This family of proteins is found in eukaryotes. Proteins in this family are typically between 241 and 349 amino acids in length. The function of this family is unknown.


The actual alignment was detected with superfamily member pfam14967:

Pssm-ID: 464411  Cd Length: 324  Bit Score: 318.25  E-value: 1.48e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958683478 101 GFARRKKISLWFVGSLLLVSTLILTIGLAATTRTENVTVGGYYPGIILGFGSFLGIIGIHLVENRRQMLVAAIVFLSFGV 180
Cdd:pfam14967  15 SFARRKRTSLWVTVSLLVVSLLILTVGLAATTRTENVTVGGYYPGIILGFGSFLGIIGIHLVENRRQMLVASIVFISFGV 94

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958683478 181 VAAFCCAIVDGVFAARHIEPRPLSAGRCQFYSSGAGYLYDVYQTEVTCYSLSGRCQLKRRALAC 244
Cdd:pfam14967  95 VAAFCCAIVDGVFAARHIDLRPLYAGRCQFYSSGSGYAYDVYQTEVTCQSLSGSCKLKVRSNTC 158
SF-CC1 super family cl36939
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors ...
 12-108 4.52e-04

splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed.


The actual alignment was detected with superfamily member TIGR01622:

Pssm-ID: 273721 [Multi-domain]  Cd Length: 494  Bit Score: 41.06  E-value: 4.52e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958683478  12 RERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAelRERSTAELRERSTAELRERSTAELRERSTAEL 91
Cdd:TIGR01622   3 RDRERERLRDSSSAGDRDRRRDKGRERSRDRSRDRERSRSRRRDRH--RDRDYYRGRERRSRSRRPNRRYRPREKRRRRG 80

                          90
                  ....*....|....*..
gi 1958683478  92 RERSTAELQGFARRKKI 108
Cdd:TIGR01622  81 DSYRRRRDDRRSRREKP 97
 
Name Accession Description Interval E-value
FAM70 pfam14967
FAM70 protein; This family of proteins is found in eukaryotes. Proteins in this family are ...
 101-244 1.48e-109

FAM70 protein; This family of proteins is found in eukaryotes. Proteins in this family are typically between 241 and 349 amino acids in length. The function of this family is unknown.


Pssm-ID: 464411  Cd Length: 324  Bit Score: 318.25  E-value: 1.48e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958683478 101 GFARRKKISLWFVGSLLLVSTLILTIGLAATTRTENVTVGGYYPGIILGFGSFLGIIGIHLVENRRQMLVAAIVFLSFGV 180
Cdd:pfam14967  15 SFARRKRTSLWVTVSLLVVSLLILTVGLAATTRTENVTVGGYYPGIILGFGSFLGIIGIHLVENRRQMLVASIVFISFGV 94

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958683478 181 VAAFCCAIVDGVFAARHIEPRPLSAGRCQFYSSGAGYLYDVYQTEVTCYSLSGRCQLKRRALAC 244
Cdd:pfam14967  95 VAAFCCAIVDGVFAARHIDLRPLYAGRCQFYSSGSGYAYDVYQTEVTCQSLSGSCKLKVRSNTC 158
SF-CC1 TIGR01622
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors ...
 12-108 4.52e-04

splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed.


Pssm-ID: 273721 [Multi-domain]  Cd Length: 494  Bit Score: 41.06  E-value: 4.52e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958683478  12 RERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAelRERSTAELRERSTAELRERSTAELRERSTAEL 91
Cdd:TIGR01622   3 RDRERERLRDSSSAGDRDRRRDKGRERSRDRSRDRERSRSRRRDRH--RDRDYYRGRERRSRSRRPNRRYRPREKRRRRG 80

                          90
                  ....*....|....*..
gi 1958683478  92 RERSTAELQGFARRKKI 108
Cdd:TIGR01622  81 DSYRRRRDDRRSRREKP 97
Fibrinogen_BP pfam08017
Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family ...
 6-94 1.54e-03

Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family includes the fibrinogen receptor, FbsA, which mediates platelet aggregation.


Pssm-ID: 311808 [Multi-domain]  Cd Length: 393  Bit Score: 39.08  E-value: 1.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958683478   6 RSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRE 85
Cdd:pfam08017 201 RSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENKSQGNVLERRQRDAENRSQGNVLERRQRDAEN 280


                  ....*....
gi 1958683478  86 RSTAELRER 94
Cdd:pfam08017 281 RSQGNVLER 289
 
Name Accession Description Interval E-value
FAM70 pfam14967
FAM70 protein; This family of proteins is found in eukaryotes. Proteins in this family are ...
 101-244 1.48e-109

FAM70 protein; This family of proteins is found in eukaryotes. Proteins in this family are typically between 241 and 349 amino acids in length. The function of this family is unknown.


Pssm-ID: 464411  Cd Length: 324  Bit Score: 318.25  E-value: 1.48e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958683478 101 GFARRKKISLWFVGSLLLVSTLILTIGLAATTRTENVTVGGYYPGIILGFGSFLGIIGIHLVENRRQMLVAAIVFLSFGV 180
Cdd:pfam14967  15 SFARRKRTSLWVTVSLLVVSLLILTVGLAATTRTENVTVGGYYPGIILGFGSFLGIIGIHLVENRRQMLVASIVFISFGV 94

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958683478 181 VAAFCCAIVDGVFAARHIEPRPLSAGRCQFYSSGAGYLYDVYQTEVTCYSLSGRCQLKRRALAC 244
Cdd:pfam14967  95 VAAFCCAIVDGVFAARHIDLRPLYAGRCQFYSSGSGYAYDVYQTEVTCQSLSGSCKLKVRSNTC 158
SF-CC1 TIGR01622
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors ...
 12-108 4.52e-04

splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed.


Pssm-ID: 273721 [Multi-domain]  Cd Length: 494  Bit Score: 41.06  E-value: 4.52e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958683478  12 RERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAelRERSTAELRERSTAELRERSTAELRERSTAEL 91
Cdd:TIGR01622   3 RDRERERLRDSSSAGDRDRRRDKGRERSRDRSRDRERSRSRRRDRH--RDRDYYRGRERRSRSRRPNRRYRPREKRRRRG 80

                          90
                  ....*....|....*..
gi 1958683478  92 RERSTAELQGFARRKKI 108
Cdd:TIGR01622  81 DSYRRRRDDRRSRREKP 97
Fibrinogen_BP pfam08017
Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family ...
 6-94 1.54e-03

Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family includes the fibrinogen receptor, FbsA, which mediates platelet aggregation.


Pssm-ID: 311808 [Multi-domain]  Cd Length: 393  Bit Score: 39.08  E-value: 1.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958683478   6 RSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRE 85
Cdd:pfam08017 201 RSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENKSQGNVLERRQRDAENRSQGNVLERRQRDAEN 280


                  ....*....
gi 1958683478  86 RSTAELRER 94
Cdd:pfam08017 281 RSQGNVLER 289
Fibrinogen_BP pfam08017
Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family ...
 6-94 2.14e-03

Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family includes the fibrinogen receptor, FbsA, which mediates platelet aggregation.


Pssm-ID: 311808 [Multi-domain]  Cd Length: 393  Bit Score: 38.69  E-value: 2.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958683478   6 RSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRE 85
Cdd:pfam08017  89 RSQGNVLERRQRDAENRSQGNVLERRQRDAENKSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAEN 168


                  ....*....
gi 1958683478  86 RSTAELRER 94
Cdd:pfam08017 169 RSQGNVLER 177
SF-CC1 TIGR01622
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors ...
 6-94 2.71e-03

splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed.


Pssm-ID: 273721 [Multi-domain]  Cd Length: 494  Bit Score: 38.75  E-value: 2.71e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958683478   6 RSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAelRERSTAELRERSTAELRERStaelRERSTAELRE 85
Cdd:TIGR01622   5 RERERLRDSSSAGDRDRRRDKGRERSRDRSRDRERSRSRRRDRH--RDRDYYRGRERRSRSRRPNR----RYRPREKRRR 78


                  ....*....
gi 1958683478  86 RSTAELRER 94
Cdd:TIGR01622  79 RGDSYRRRR 87
Fibrinogen_BP pfam08017
Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family ...
 6-100 2.83e-03

Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family includes the fibrinogen receptor, FbsA, which mediates platelet aggregation.


Pssm-ID: 311808 [Multi-domain]  Cd Length: 393  Bit Score: 38.31  E-value: 2.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958683478   6 RSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRE 85
Cdd:pfam08017  73 RSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENKSQGNVLERRQRDAENRSQGNVLERRQRDAEN 152

                          90
                  ....*....|....*
gi 1958683478  86 RSTAELRERSTAELQ 100
Cdd:pfam08017 153 RSQGNVLERRQRDAE 167
U2AF_lg TIGR01642
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ...
 10-111 3.95e-03

U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi.


Pssm-ID: 273727 [Multi-domain]  Cd Length: 509  Bit Score: 37.95  E-value: 3.95e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958683478  10 ELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTA 89
Cdd:TIGR01642   3 EEPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSRSPRSLRYSSVRRSRDRPRRRS 82

                          90       100
                  ....*....|....*....|..
gi 1958683478  90 ELRERSTAELQGFARRKKISLW 111
Cdd:TIGR01642  83 RSVRSIEQHRRRLRDRSPSNQW 104
Fibrinogen_BP pfam08017
Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family ...
 6-94 4.12e-03

Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family includes the fibrinogen receptor, FbsA, which mediates platelet aggregation.


Pssm-ID: 311808 [Multi-domain]  Cd Length: 393  Bit Score: 37.92  E-value: 4.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958683478   6 RSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRE 85
Cdd:pfam08017 185 KSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENKSQGNVLERRQRDAEN 264


                  ....*....
gi 1958683478  86 RSTAELRER 94
Cdd:pfam08017 265 RSQGNVLER 273
U2AF_lg TIGR01642
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ...
 5-106 4.69e-03

U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi.


Pssm-ID: 273727 [Multi-domain]  Cd Length: 509  Bit Score: 37.95  E-value: 4.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958683478   5 KRSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAEL----RERSTAELRERS- 79
Cdd:TIGR01642   6 DREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSRSPRSLRYssvrRSRDRPRRRSRSv 85

                          90       100
                  ....*....|....*....|....*..
gi 1958683478  80 TAELRERSTAELRERSTAELQGFARRK 106
Cdd:TIGR01642  86 RSIEQHRRRLRDRSPSNQWRKDDKKRS 112
Fibrinogen_BP pfam08017
Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family ...
 5-107 5.26e-03

Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family includes the fibrinogen receptor, FbsA, which mediates platelet aggregation.


Pssm-ID: 311808 [Multi-domain]  Cd Length: 393  Bit Score: 37.54  E-value: 5.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958683478   5 KRSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELR 84
Cdd:pfam08017 192 ERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENKSQGNVLERRQRDAENRSQGNVL 271

                          90       100
                  ....*....|....*....|...
gi 1958683478  85 ERSTAELRERSTAELqgFARRKK 107
Cdd:pfam08017 272 ERRQRDAENRSQGNV--LERRQR 292
Fibrinogen_BP pfam08017
Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family ...
 6-94 5.70e-03

Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family includes the fibrinogen receptor, FbsA, which mediates platelet aggregation.


Pssm-ID: 311808 [Multi-domain]  Cd Length: 393  Bit Score: 37.54  E-value: 5.70e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958683478   6 RSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRE 85
Cdd:pfam08017  41 RSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAEN 120


                  ....*....
gi 1958683478  86 RSTAELRER 94
Cdd:pfam08017 121 KSQGNVLER 129
Fibrinogen_BP pfam08017
Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family ...
 6-94 5.70e-03

Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family includes the fibrinogen receptor, FbsA, which mediates platelet aggregation.


Pssm-ID: 311808 [Multi-domain]  Cd Length: 393  Bit Score: 37.54  E-value: 5.70e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958683478   6 RSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRE 85
Cdd:pfam08017 105 RSQGNVLERRQRDAENKSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAEN 184


                  ....*....
gi 1958683478  86 RSTAELRER 94
Cdd:pfam08017 185 KSQGNVLER 193
Fibrinogen_BP pfam08017
Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family ...
 6-94 5.70e-03

Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family includes the fibrinogen receptor, FbsA, which mediates platelet aggregation.


Pssm-ID: 311808 [Multi-domain]  Cd Length: 393  Bit Score: 37.54  E-value: 5.70e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958683478   6 RSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRE 85
Cdd:pfam08017 121 KSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENKSQGNVLERRQRDAEN 200


                  ....*....
gi 1958683478  86 RSTAELRER 94
Cdd:pfam08017 201 RSQGNVLER 209
Fibrinogen_BP pfam08017
Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family ...
 6-94 5.70e-03

Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family includes the fibrinogen receptor, FbsA, which mediates platelet aggregation.


Pssm-ID: 311808 [Multi-domain]  Cd Length: 393  Bit Score: 37.54  E-value: 5.70e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958683478   6 RSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRE 85
Cdd:pfam08017 137 RSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENKSQGNVLERRQRDAENRSQGNVLERRQRDAEN 216


                  ....*....
gi 1958683478  86 RSTAELRER 94
Cdd:pfam08017 217 RSQGNVLER 225
Fibrinogen_BP pfam08017
Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family ...
 6-94 5.70e-03

Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family includes the fibrinogen receptor, FbsA, which mediates platelet aggregation.


Pssm-ID: 311808 [Multi-domain]  Cd Length: 393  Bit Score: 37.54  E-value: 5.70e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958683478   6 RSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRE 85
Cdd:pfam08017 153 RSQGNVLERRQRDAENRSQGNVLERRQRDAENKSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAEN 232


                  ....*....
gi 1958683478  86 RSTAELRER 94
Cdd:pfam08017 233 RSQGNVLER 241
Fibrinogen_BP pfam08017
Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family ...
 5-107 7.27e-03

Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family includes the fibrinogen receptor, FbsA, which mediates platelet aggregation.


Pssm-ID: 311808 [Multi-domain]  Cd Length: 393  Bit Score: 37.15  E-value: 7.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958683478   5 KRSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELRERSTAELR 84
Cdd:pfam08017  80 ERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENKSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVL 159

                          90       100
                  ....*....|....*....|...
gi 1958683478  85 ERSTAELRERSTAELqgFARRKK 107
Cdd:pfam08017 160 ERRQRDAENRSQGNV--LERRQR 180
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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