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Conserved domains on  [gi|1958743375|ref|XP_038952889|]
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prefoldin subunit 1 isoform X1 [Rattus norvegicus]

Protein Classification

prefoldin domain-containing protein( domain architecture ID 2200)

prefoldin domain-containing protein may function as a molecular chaperone that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Prefoldin super family cl09111
prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and ...
15-66 2.28e-20

prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits; the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes, there are two or more paralogous genes encoding each subunit, adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.


The actual alignment was detected with superfamily member cd23164:

Pssm-ID: 471851  Cd Length: 99  Bit Score: 77.63  E-value: 2.28e-20
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 1958743375 15 ELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGR 66
Cdd:cd23164    1 ELQAKMIETQQQLKLADAQIEQLEREKRRAQLTAKELSSLPEDTRTYEGVGR 52
 
Name Accession Description Interval E-value
Prefoldin_1 cd23164
prefoldin subunit 1; Prefoldin subunit 1 is one of the beta subunits of the eukaryotic ...
15-66 2.28e-20

prefoldin subunit 1; Prefoldin subunit 1 is one of the beta subunits of the eukaryotic prefoldin complex. Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.


Pssm-ID: 467480  Cd Length: 99  Bit Score: 77.63  E-value: 2.28e-20
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 1958743375 15 ELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGR 66
Cdd:cd23164    1 ELQAKMIETQQQLKLADAQIEQLEREKRRAQLTAKELSSLPEDTRTYEGVGR 52
Prefoldin_2 pfam01920
Prefoldin subunit; This family includes prefoldin subunits that are not detected by pfam02996.
17-67 3.96e-04

Prefoldin subunit; This family includes prefoldin subunits that are not detected by pfam02996.


Pssm-ID: 396482 [Multi-domain]  Cd Length: 102  Bit Score: 36.05  E-value: 3.96e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1958743375  17 QAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRI 67
Cdd:pfam01920   1 INKFQQLQQQLQLLAQQIKQLETQLKELELALEELELLDEDTKVYKLIGDV 51
 
Name Accession Description Interval E-value
Prefoldin_1 cd23164
prefoldin subunit 1; Prefoldin subunit 1 is one of the beta subunits of the eukaryotic ...
15-66 2.28e-20

prefoldin subunit 1; Prefoldin subunit 1 is one of the beta subunits of the eukaryotic prefoldin complex. Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.


Pssm-ID: 467480  Cd Length: 99  Bit Score: 77.63  E-value: 2.28e-20
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 1958743375 15 ELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGR 66
Cdd:cd23164    1 ELQAKMIETQQQLKLADAQIEQLEREKRRAQLTAKELSSLPEDTRTYEGVGR 52
Prefoldin_beta cd00632
Prefoldin beta subunit; Beta subunits of prefoldin, a hexameric molecular chaperone complex, ...
26-67 4.25e-06

Prefoldin beta subunit; Beta subunits of prefoldin, a hexameric molecular chaperone complex, found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.


Pssm-ID: 467469  Cd Length: 78  Bit Score: 40.40  E-value: 4.25e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 1958743375 26 KVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRI 67
Cdd:cd00632    1 EVLALKSQKEELERKINEQKVVLDELSNLKKNRKVYRQQGNI 42
Prefoldin_2 pfam01920
Prefoldin subunit; This family includes prefoldin subunits that are not detected by pfam02996.
17-67 3.96e-04

Prefoldin subunit; This family includes prefoldin subunits that are not detected by pfam02996.


Pssm-ID: 396482 [Multi-domain]  Cd Length: 102  Bit Score: 36.05  E-value: 3.96e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1958743375  17 QAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRI 67
Cdd:pfam01920   1 INKFQQLQQQLQLLAQQIKQLETQLKELELALEELELLDEDTKVYKLIGDV 51
Prefoldin cd00890
prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and ...
26-67 4.92e-04

prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits; the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes, there are two or more paralogous genes encoding each subunit, adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.


Pssm-ID: 467470  Cd Length: 79  Bit Score: 35.39  E-value: 4.92e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 1958743375 26 KVKLADIQIEQLNRTKKHAHLTDTEIMTLV-DETNMYEGVGRI 67
Cdd:cd00890    1 QVQALSQQIEQLNRQINELEEALDELSNLDkDTEEVYRSVGGV 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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