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Conserved domains on  [gi|1958747163|ref|XP_038953862|]
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transmembrane protein 170A isoform X1 [Rattus norvegicus]

Protein Classification

Tmemb_170 domain-containing protein( domain architecture ID 10562846)

Tmemb_170 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Tmemb_170 pfam10190
Putative transmembrane protein 170; Tmem170 is a family of putative transmembrane proteins ...
 39-121 7.31e-26

Putative transmembrane protein 170; Tmem170 is a family of putative transmembrane proteins conserved from fungi to nematodes to humans. The protein is only of approximately 130 amino acids in length. The function is unknown.


:

Pssm-ID: 462988  Cd Length: 106  Bit Score: 93.07  E-value: 7.31e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958747163  39 SLCSFPEMWYGVFLWALMSSVFFHVPAGLLALFTLRHHKYG-----------------------AAIAGVYRAAGKEMIP 95
Cdd:pfam10190   1 TLYDFGEMWYAIFLWALFSSIFVHLVAALIAFFTLRKHKFGrfipilillmgilipltggaitsAAIAFVYRASSFSMSP 80

                          90       100
                  ....*....|....*....|....*.
gi 1958747163  96 FEALTLGTGQTFCVVVVSFLRVLATL 121
Cdd:pfam10190  81 LYAMIWGVGQTILLVIISFTRILATL 106
 
Name Accession Description Interval E-value
Tmemb_170 pfam10190
Putative transmembrane protein 170; Tmem170 is a family of putative transmembrane proteins ...
 39-121 7.31e-26

Putative transmembrane protein 170; Tmem170 is a family of putative transmembrane proteins conserved from fungi to nematodes to humans. The protein is only of approximately 130 amino acids in length. The function is unknown.


Pssm-ID: 462988  Cd Length: 106  Bit Score: 93.07  E-value: 7.31e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958747163  39 SLCSFPEMWYGVFLWALMSSVFFHVPAGLLALFTLRHHKYG-----------------------AAIAGVYRAAGKEMIP 95
Cdd:pfam10190   1 TLYDFGEMWYAIFLWALFSSIFVHLVAALIAFFTLRKHKFGrfipilillmgilipltggaitsAAIAFVYRASSFSMSP 80

                          90       100
                  ....*....|....*....|....*.
gi 1958747163  96 FEALTLGTGQTFCVVVVSFLRVLATL 121
Cdd:pfam10190  81 LYAMIWGVGQTILLVIISFTRILATL 106
 
Name Accession Description Interval E-value
Tmemb_170 pfam10190
Putative transmembrane protein 170; Tmem170 is a family of putative transmembrane proteins ...
 39-121 7.31e-26

Putative transmembrane protein 170; Tmem170 is a family of putative transmembrane proteins conserved from fungi to nematodes to humans. The protein is only of approximately 130 amino acids in length. The function is unknown.


Pssm-ID: 462988  Cd Length: 106  Bit Score: 93.07  E-value: 7.31e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958747163  39 SLCSFPEMWYGVFLWALMSSVFFHVPAGLLALFTLRHHKYG-----------------------AAIAGVYRAAGKEMIP 95
Cdd:pfam10190   1 TLYDFGEMWYAIFLWALFSSIFVHLVAALIAFFTLRKHKFGrfipilillmgilipltggaitsAAIAFVYRASSFSMSP 80

                          90       100
                  ....*....|....*....|....*.
gi 1958747163  96 FEALTLGTGQTFCVVVVSFLRVLATL 121
Cdd:pfam10190  81 LYAMIWGVGQTILLVIISFTRILATL 106
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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