|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
464-1202 |
8.17e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 86.65 E-value: 8.17e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 464 ENLQHEKQEVVLNYESLREMMEILQTELGESAGKISqEFETMKQQQASDVHELQQKLRTAFNEKDALLETINRLQGENEK 543
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEKLE-ELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 544 LLSQElvSELESTMKNLKADNSMYLASLGQKDTLLQELEAKISSLAEEKDDFISKIKTSREEIDDLHQKWEREQKLSVEL 623
Cdd:TIGR02168 314 LERQL--EELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQL 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 624 REAAEQAAQHNSELRQRVSELTGKLDEILREKSQNDQNIM-VQMKTMTEDQEALSSKIKSLYEENNRLHSEKVQLSRDLE 702
Cdd:TIGR02168 392 ELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEeAELKELQAELEELEEELEELQEELERLEEALEELREELE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 703 ALQSQ-QDFAYKEHVAEFEKK-LQLMVEERDDLN---KLLENEQLQKSFVKTQLYEFLKqmrpsiLEDNEEEDVVTVLKA 777
Cdd:TIGR02168 472 EAEQAlDAAERELAQLQARLDsLERLQENLEGFSegvKALLKNQSGLSGILGVLSELIS------VDEGYEAAIEAALGG 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 778 VGESLVTVKEEKHNLVFEYDARVlELERRIKClqEESVVQCEELRALVRDSEQEKILLRKELDEVTSTKEALQCDILEMK 857
Cdd:TIGR02168 546 RLQAVVVENLNAAKKAIAFLKQN-ELGRVTFL--PLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLL 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 858 NtnekTSLENQTLSTRVEELSRSLHSKNEVHNEKDLVI-------EHENLRLSLEQRESELQDVRAELMLLKDSLEksps 930
Cdd:TIGR02168 623 G----GVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRpggvitgGSAKTNSSILERRREIEELEEKIEELEEKIA---- 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 931 vkndqlslvkELEEKIESLEKESKDKDEKISKIKLVAVRAKKELDSNRKEAQTLRDELESVQSEKDRLSASMKEFIQGAE 1010
Cdd:TIGR02168 695 ----------ELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIE 764
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1011 SyknLLLEYDKQSEQLDVEKERANNFEHHIEDLTKQLRDSTCQYEKLTSDNEDLLARIETLQANARLLEAQILEVQRAKG 1090
Cdd:TIGR02168 765 E---LEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1091 VVEKELEAEKLQKEQKIKEHVSTTNELEELQLQFQKEKKQLQKTMQELELVKKDAQQttlMNMEIADYERLMKELNQKLT 1170
Cdd:TIGR02168 842 DLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEE---LSEELRELESKRSELRRELE 918
|
730 740 750
....*....|....*....|....*....|..
gi 1958757302 1171 NKNSKIEDLEQEMKIQKQKQETLQEEMTSLQS 1202
Cdd:TIGR02168 919 ELREKLAQLELRLEGLEVRIDNLQERLSEEYS 950
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
333-1209 |
4.14e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 80.87 E-value: 4.14e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 333 QLEDSLKELESQhsilkdevtyMNNLKLKLEmdaqhiKDEFFHEREDLEFKINELLLAKEeqsyvVEKLKYEREDLNRQL 412
Cdd:TIGR02168 190 RLEDILNELERQ----------LKSLERQAE------KAERYKELKAELRELELALLVLR-----LEELREELEELQEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 413 cctveqhnKEIQRLQEHHQKEISELSETFmSGSEKEKLALMFEIQGLKEQCENLQHEKQEVVLNYESLREMMEILQTELg 492
Cdd:TIGR02168 249 --------KEAEEELEELTAELQELEEKL-EELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQL- 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 493 ESAGKISQEFETMKQQQASDVHELQQKLRTAFNEKDALLETINRLQGENEKLLSQelVSELESTMKNLKADNSMYLASLG 572
Cdd:TIGR02168 319 EELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESR--LEELEEQLETLRSKVAQLELQIA 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 573 QKDTLLQELEAKISSLAEEKDDFISKI-----KTSREEIDDLHQKWEREQKLSVELREAAEQAAQHNSELRQRVSELTGK 647
Cdd:TIGR02168 397 SLNNEIERLEARLERLEDRRERLQQEIeellkKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQA 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 648 LDEILREKSQNDQNIMVqMKTMTEDQEALSSKIKSLYEENNRLHSEKVQLSrdlEALQSQQDFAyKEHVAEFEKKLQLMV 727
Cdd:TIGR02168 477 LDAAERELAQLQARLDS-LERLQENLEGFSEGVKALLKNQSGLSGILGVLS---ELISVDEGYE-AAIEAALGGRLQAVV 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 728 EERDDLNKLLENEQLQKSFVKTQLYEfLKQMRPSILEDNEEEDVVTVLKAVGESLVTVK-EEKHNLVFEY---------- 796
Cdd:TIGR02168 552 VENLNAAKKAIAFLKQNELGRVTFLP-LDSIKGTEIQGNDREILKNIEGFLGVAKDLVKfDPKLRKALSYllggvlvvdd 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 797 ------DARVLELERRIKCLQEESVVQCEELRALVRDSEQEKILLRKELDEVTSTKEALQCDILEMKNTNEKTSLENQTL 870
Cdd:TIGR02168 631 ldnaleLAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEEL 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 871 STRVEELSRSLHSKNevhnekdlvIEHENLRLSLEQRESELQDVRAELMLLKDSLEKSPSVKNDQLSLVKELEEKIESLE 950
Cdd:TIGR02168 711 EEELEQLRKELEELS---------RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE 781
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 951 KESKDKDEKISKIKLVAVRAKKELDSNRKEAQTLRDELESVQSEKDRLSASMKEfiqgaesyknllleydkQSEQLDVEK 1030
Cdd:TIGR02168 782 AEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAA-----------------TERRLEDLE 844
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1031 ERANNFEHHIEDLTKQLRDSTCQYEKLTSDNEDLLARIETLQANARLLEAQILEVQRAKGVVEKELEAEKLQKEQKIKEH 1110
Cdd:TIGR02168 845 EQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKL 924
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1111 VSTTNELEELQLQFQKEKKQL-QKTMQELELVKKDAQQTTlmnMEIADYERLMKELNQKLTNKNSKIEDLEQEMKIQKQK 1189
Cdd:TIGR02168 925 AQLELRLEGLEVRIDNLQERLsEEYSLTLEEAEALENKIE---DDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKER 1001
|
890 900
....*....|....*....|
gi 1958757302 1190 QETLQEEMTSLQSSVQHYEE 1209
Cdd:TIGR02168 1002 YDFLTAQKEDLTEAKETLEE 1021
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
370-1214 |
5.85e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 73.95 E-value: 5.85e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 370 KDEFFHEREDLEFKINELLLAKEEQSYVVEKLKYEREDLnrqlcctvEQHNKEIQRLQEHHQKEISELSETfmsgSEKEK 449
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKA--------ERYQALLKEKREYEGYELLKEKEA----LERQK 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 450 LALMFEIQGLKEQCENLQHEKQEVVLNYESLREMME---------------ILQTELGESAGKISQEFETMKQQQaSDVH 514
Cdd:TIGR02169 240 EAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEelnkkikdlgeeeqlRVKEKIGELEAEIASLERSIAEKE-RELE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 515 ELQQKLRTAFNEKDALLETINRLQGENEKLlsQELVSELESTMKNLKADNSMYLASLGQKDTLLQELEAKISSLAEEKDD 594
Cdd:TIGR02169 319 DAEERLAKLEAEIDKLLAEIEELEREIEEE--RKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEK 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 595 FISKIKTSREEIDDLHqkwEREQKLSVELREAAEQAAqhnsELRQRVSELTGKLDEILREKSQNDQNImvqmKTMTEDQE 674
Cdd:TIGR02169 397 LKREINELKRELDRLQ---EELQRLSEELADLNAAIA----GIEAKINELEEEKEDKALEIKKQEWKL----EQLAADLS 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 675 ALSSKIKSLYEENNRLHSEKVQLSRDLEALQSQQDFA------YKEHVAEFEKKLQLMVEERDDLNKLLENEQ------- 741
Cdd:TIGR02169 466 KYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASeervrgGRAVEEVLKASIQGVHGTVAQLGSVGERYAtaievaa 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 742 ---LQKSFVKT-----QLYEFLKQM---RPSILEDNEEEDVvtvlkavgESLVTVKEEKHNLVFEYDarVLELERRIkcl 810
Cdd:TIGR02169 546 gnrLNNVVVEDdavakEAIELLKRRkagRATFLPLNKMRDE--------RRDLSILSEDGVIGFAVD--LVEFDPKY--- 612
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 811 qEESVVQCEELRALVRDSEQEKILLRK--------ELDEVTS--TKEALQCDILEMKNTNEKTSLenQTLSTRVEELSRS 880
Cdd:TIGR02169 613 -EPAFKYVFGDTLVVEDIEAARRLMGKyrmvtlegELFEKSGamTGGSRAPRGGILFSRSEPAEL--QRLRERLEGLKRE 689
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 881 LHS-KNEVHNEKDLVIEhenLRLSLEQRESELQDVRAELMLLKDSLEKSPSVKNDQLSLVKELEEKIESLEKESKDKDEK 959
Cdd:TIGR02169 690 LSSlQSELRRIENRLDE---LSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEAR 766
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 960 ISKIKLVAVRAKKELDS-----NRKEAQTLRDELESVQSEKDRLSASMKEFIQ--GAESYKNLLLEYDKQSEQLDVE--K 1030
Cdd:TIGR02169 767 IEELEEDLHKLEEALNDlearlSHSRIPEIQAELSKLEEEVSRIEARLREIEQklNRLTLEKEYLEKEIQELQEQRIdlK 846
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1031 ERANNFEHHIEDLTKQLRDSTCQYEKLTSDNEDLLARIETLQANARLLEAQILEVQRAKGvvekELEAEKLQKEQKIKEH 1110
Cdd:TIGR02169 847 EQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIE----ELEAQIEKKRKRLSEL 922
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1111 VSTTNELEELQLQFQKEKKQLQKTMQELELVKKDAQQTTLMNMEIADYERLmkelnqkltnKNSKIEDLEQEMKIQ---K 1187
Cdd:TIGR02169 923 KAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPV----------NMLAIQEYEEVLKRLdelK 992
|
890 900
....*....|....*....|....*..
gi 1958757302 1188 QKQETLQEEMTSLQSSVQHYEEKNAQI 1214
Cdd:TIGR02169 993 EKRAKLEEERKAILERIEEYEKKKREV 1019
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
327-1120 |
6.84e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.55 E-value: 6.84e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 327 VYDKVRQLEDSLKELESQHSI------LKDEVTYMNNLKLKLEMDAQHIK-DEFFHEREDLEFKINEL---LLAKEEQSY 396
Cdd:TIGR02168 191 LEDILNELERQLKSLERQAEKaerykeLKAELRELELALLVLRLEELREElEELQEELKEAEEELEELtaeLQELEEKLE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 397 VVEKLKYEREDLNRQLCCTVEQHNKEIQRLQ---EHHQKEISELsetfmsgsEKEKLALMFEIQGLKEQCENLQHEKQEV 473
Cdd:TIGR02168 271 ELRLEVSELEEEIEELQKELYALANEISRLEqqkQILRERLANL--------ERQLEELEAQLEELESKLDELAEELAEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 474 VLNYESLREMMEILQTELgesagkisQEFETMKQQQASDVHELQQKLRTAFNEKDALLETINRLQGENEKLLSQelVSEL 553
Cdd:TIGR02168 343 EEKLEELKEELESLEAEL--------EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEAR--LERL 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 554 ESTMKNLKADNSMYLASLGQKDtlLQELEAKISSLAEEkddfiskIKTSREEIDDLHQKWEREQKLSVELREAAEQAAQH 633
Cdd:TIGR02168 413 EDRRERLQQEIEELLKKLEEAE--LKELQAELEELEEE-------LEELQEELERLEEALEELREELEEAEQALDAAERE 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 634 NSELRQRVsELTGKLDEILREKSQNDQNIMVQMKTMTEDQEALSSKIKSlyEENNRLHSEKVqLSRDLEALQSQQDFAYK 713
Cdd:TIGR02168 484 LAQLQARL-DSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISV--DEGYEAAIEAA-LGGRLQAVVVENLNAAK 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 714 EHVAEFEKKLQLMV--------EERDDLNKLLENEQLQKSFVKT--QLYEFLKQMRPS---------ILEDNEEEDVVTV 774
Cdd:TIGR02168 560 KAIAFLKQNELGRVtflpldsiKGTEIQGNDREILKNIEGFLGVakDLVKFDPKLRKAlsyllggvlVVDDLDNALELAK 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 775 LKAVGESLVTVK--------------EEKHNLVFEYDARVLELERRIKCLQEesvvQCEELRALVRDSEQEKILLRKELD 840
Cdd:TIGR02168 640 KLRPGYRIVTLDgdlvrpggvitggsAKTNSSILERRREIEELEEKIEELEE----KIAELEKALAELRKELEELEEELE 715
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 841 EVTSTKEALQCDILEMKNTNEKTSLENQTLSTRVEELSRSLhsknevhneKDLVIEHENLRLSLEQRESELQDVRAELML 920
Cdd:TIGR02168 716 QLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL---------TELEAEIEELEERLEEAEEELAEAEAEIEE 786
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 921 LKDSLEKSPSVKNDQLSLVKELEEKIESLEKESKDKDEKISKIKLVAVRAKKELDSNRKEAQTLRDELESVQSEKDRLSA 1000
Cdd:TIGR02168 787 LEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEE 866
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1001 SMKEFIQGAESyknLLLEYDKQSEQLDVEKERANNFEHHIEDLTKQLRDSTCQYEKLTSDNEDLLARIETLQANARLLEA 1080
Cdd:TIGR02168 867 LIEELESELEA---LLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
810 820 830 840
....*....|....*....|....*....|....*....|.
gi 1958757302 1081 QILEVQRAKGVVEKELEAEKLQKEQKIKEHV-STTNELEEL 1120
Cdd:TIGR02168 944 RLSEEYSLTLEEAEALENKIEDDEEEARRRLkRLENKIKEL 984
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1015-1268 |
3.10e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.51 E-value: 3.10e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1015 LLLEYDKQSEQLDVEKERANNFEHHIEDLTKQLRDSTCQYEKLTSDNEDLLARIETLQANARLLEAQILEVQRAKGVVEK 1094
Cdd:COG1196 230 LLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1095 ----------ELEAEKLQKEQKIKEHVSTTNELEELQLQFQKEKKQLQKTMQELELVKKDAQQTTLMNME-IADYERLMK 1163
Cdd:COG1196 310 rrreleerleELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEeLEELAEELL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1164 ELNQKLTNKNSKIEDLEQEMKIQKQKQETLQEEMTSLQSSVQHYEEKNAQIKQLLVKTKKELADAKQAETDHLLLQASLK 1243
Cdd:COG1196 390 EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELL 469
|
250 260
....*....|....*....|....*
gi 1958757302 1244 GELEASQQQVEVYKIQLAEMTSEKH 1268
Cdd:COG1196 470 EEAALLEAALAELLEELAEAAARLL 494
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
596-1303 |
8.32e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.09 E-value: 8.32e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 596 ISKIKTSREE--------------IDDLHQKWEREQKLSVELREAAEQAAQHNSELRQ-RVSELTGKLDEILREKSQNDQ 660
Cdd:TIGR02168 167 ISKYKERRKEterklertrenldrLEDILNELERQLKSLERQAEKAERYKELKAELRElELALLVLRLEELREELEELQE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 661 nimvQMKTMTEDQEALSSKIKSLYEENNRLHSEKVQLSRDLEALQSQQdFAYKEHVAEFEKKLQLMVEERDDLNKLLE-- 738
Cdd:TIGR02168 247 ----ELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL-YALANEISRLEQQKQILRERLANLERQLEel 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 739 NEQLQKSFVKTQLYEFLKqmrpsiledNEEEDVVTVLKAVGESLVTVKEEKHNLVFEYDARVLELERRIkclqeesvvqc 818
Cdd:TIGR02168 322 EAQLEELESKLDELAEEL---------AELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL----------- 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 819 EELRALVRDSEQEKILLRKELDEVTSTKEALQCDIleMKNTNEKTSLENQTLSTRVEELSRSLHSKNEVHNEK-----DL 893
Cdd:TIGR02168 382 ETLRSKVAQLELQIASLNNEIERLEARLERLEDRR--ERLQQEIEELLKKLEEAELKELQAELEELEEELEELqeeleRL 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 894 VIEHENLRLSLEQRESELQDVRAELMLLKDSLEkspSVKNDQLSLVKELEEKIESLEKESKDKDEKISKIKLVAVRAKKE 973
Cdd:TIGR02168 460 EEALEELREELEEAEQALDAAERELAQLQARLD---SLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYE 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 974 ------------------LDSNRKEAQTLRDE-------LESVQSEKDRLSASMKEFIQGAESYKNLLLEYDKQSEQLDV 1028
Cdd:TIGR02168 537 aaieaalggrlqavvvenLNAAKKAIAFLKQNelgrvtfLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRK 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1029 EKERANNFEHHIEDLTKQLRD--STCQYEKLTSDNEDLLARIETLQANARLLEAQILEVQRAKGVVEKELEAEKLQKEQK 1106
Cdd:TIGR02168 617 ALSYLLGGVLVVDDLDNALELakKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAEL 696
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1107 IKEHVSTTNELEELQLQFQKEKKQLQKTMQELELVKKDAQQTT----LMNMEIADYERLMKELNQKLTNKNSKIEDLEQE 1182
Cdd:TIGR02168 697 EKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEaeveQLEERIAQLSKELTELEAEIEELEERLEEAEEE 776
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1183 MKIQKQKQETLQEEMTSLQSSVQHYEEKNAQIKQLLVKTKKELADAKQAETDHLLLQASLKGELEASQQQVEVYKIQLAE 1262
Cdd:TIGR02168 777 LAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIES 856
|
730 740 750 760
....*....|....*....|....*....|....*....|.
gi 1958757302 1263 MTSEkhkiHEHLKTSAEQHQRTLSAYQQRVVALQEESRTAK 1303
Cdd:TIGR02168 857 LAAE----IEELEELIEELESELEALLNERASLEEALALLR 893
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1064-1304 |
2.79e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.42 E-value: 2.79e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1064 LLARIETLQANARLLEAQILEVQRAKGVVEKELEAEKLQKEQKIKEHVSTTNELEELQLQFQKEKKQLQKTMQELELVKK 1143
Cdd:COG1196 230 LLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1144 DAQQTTL----MNMEIADYERLMKELNQKLTNKNSKIEDLEQEMKIQKQKQETLQEEMTSLQSSVQHYEEKNAQIKQLLV 1219
Cdd:COG1196 310 RRRELEErleeLEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1220 KTKKELADAKQAETDHLLLQASLKGELEASQQQVEVYKIQLAEMTSEKHKIHEHLKTSAEQHQRTLSAYQQRVVALQEES 1299
Cdd:COG1196 390 EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELL 469
|
....*
gi 1958757302 1300 RTAKG 1304
Cdd:COG1196 470 EEAAL 474
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
104-856 |
1.34e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.23 E-value: 1.34e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 104 KQEVEDSVTKLEETQKEFEQSHRNYVREMESVK---NELIAVHSEHSKEKAALQRDLEGAVHRQAELLEQLKSQSDSEDN 180
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEeklEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 181 VKKLQEEIQNITAAFEEQTSCLQKQLEATSDEKQ--QEIIHLQKVIEDNAQHYQKDINTFQEEIVQLRATHKEEVNELMS 258
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEelKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLEL 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 259 QMETLAKEHEAAVNKLKENRVTLCETSETIPENYQCESESLNEDTSDASQENQKCSVALQED----PFAEHTVYDKVRQL 334
Cdd:TIGR02168 394 QIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEElerlEEALEELREELEEA 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 335 EDSLKELESQHSILKDEVTYMNNLKLKLEMDAQHIKdEFFHEREDLEFKINELL-LAKEEQSYVVEKLKYEREDLNRQLC 413
Cdd:TIGR02168 474 EQALDAAERELAQLQARLDSLERLQENLEGFSEGVK-ALLKNQSGLSGILGVLSeLISVDEGYEAAIEAALGGRLQAVVV 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 414 CTVEQHNKEIQRLQEHHQK-----EISELSETFMSGSEKEKLALMFEIQGLKEQCENLQhEKQEVVLNY--------ESL 480
Cdd:TIGR02168 553 ENLNAAKKAIAFLKQNELGrvtflPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFD-PKLRKALSYllggvlvvDDL 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 481 REMMEI------------LQTEL--------GESAGKISQEFETMK---------QQQASDVHELQQKLRTAFNEKDALL 531
Cdd:TIGR02168 632 DNALELakklrpgyrivtLDGDLvrpggvitGGSAKTNSSILERRReieeleekiEELEEKIAELEKALAELRKELEELE 711
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 532 ETINRLQGENEKLLSQelVSELESTMKNLKADNSMYLASLGQKDTLLQELEAKISSLAEEKDDFISKIKTSREEIDDLHQ 611
Cdd:TIGR02168 712 EELEQLRKELEELSRQ--ISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA 789
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 612 KWEREQKLSVELREAAEQAAQHNSELRQRVSELTGKLDEILREKSQNDQNIMV---QMKTMTEDQEALSSKIKSLYEENN 688
Cdd:TIGR02168 790 QIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDleeQIEELSEDIESLAAEIEELEELIE 869
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 689 RLHSEKVQLSRDLEALQSQQDFAyKEHVAEFEKKLQLMVEERDDLNKLLENEQLQKSFVKTQLyEFLKQMRPSILEDNEE 768
Cdd:TIGR02168 870 ELESELEALLNERASLEEALALL-RSELEELSEELRELESKRSELRRELEELREKLAQLELRL-EGLEVRIDNLQERLSE 947
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 769 EDVVTVLKAVGESLVTVKEEKhnlvfEYDARVLELERRIKCLQEESVVQCEELRALvrdsEQEKILLRKELDEVTSTKEA 848
Cdd:TIGR02168 948 EYSLTLEEAEALENKIEDDEE-----EARRRLKRLENKIKELGPVNLAAIEEYEEL----KERYDFLTAQKEDLTEAKET 1018
|
....*...
gi 1958757302 849 LQCDILEM 856
Cdd:TIGR02168 1019 LEEAIEEI 1026
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
330-1145 |
1.66e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.86 E-value: 1.66e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 330 KVRQLEDSLKELESQHSILKDEVTymnnlklKLEMDAQHIKDEFfHEREDLEFKINELLLAKEEQSYV-----VEKLKYE 404
Cdd:TIGR02169 231 EKEALERQKEAIERQLASLEEELE-------KLTEEISELEKRL-EEIEQLLEELNKKIKDLGEEEQLrvkekIGELEAE 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 405 REDLNRQlcctVEQHNKEIQRLQEHHQKEISELSETfmsgsekeklalMFEIQGLKEQCENLQHEKQEVVLNYESLREMM 484
Cdd:TIGR02169 303 IASLERS----IAEKERELEDAEERLAKLEAEIDKL------------LAEIEELEREIEEERKRRDKLTEEYAELKEEL 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 485 EILQTELGEsagkISQEFETMKQQQASdvheLQQKLRTAFNEKDALLETINRLQGENEKLLSQelVSELESTMKNLKADN 564
Cdd:TIGR02169 367 EDLRAELEE----VDKEFAETRDELKD----YREKLEKLKREINELKRELDRLQEELQRLSEE--LADLNAAIAGIEAKI 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 565 SMYLASLGQKDTLLQELEAKISSLAEEKDDFISKIKTSREEIDDLhQKWEREQKLSVELREAAEQAAQHNSELRQRVSEL 644
Cdd:TIGR02169 437 NELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRV-EKELSKLQRELAEAEAQARASEERVRGGRAVEEV 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 645 T--------GKLDEILREKSQNDQNIMVQM-----KTMTEDQEALSSKIKSLYEEN---------NRLHSEKVQLSRDLE 702
Cdd:TIGR02169 516 LkasiqgvhGTVAQLGSVGERYATAIEVAAgnrlnNVVVEDDAVAKEAIELLKRRKagratflplNKMRDERRDLSILSE 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 703 AlqSQQDFAYkeHVAEFEKKLQ----------LMVEERDDLNKL--------LENEQLQKSFVKT-------QLYEFLKQ 757
Cdd:TIGR02169 596 D--GVIGFAV--DLVEFDPKYEpafkyvfgdtLVVEDIEAARRLmgkyrmvtLEGELFEKSGAMTggsraprGGILFSRS 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 758 MRPSILEDNEEEDVvtvLKAVGESLVTVKEEKHNLVFEYDARVLELERRIKCLQEEsvvqceeLRALVRDSEQEKILLRK 837
Cdd:TIGR02169 672 EPAELQRLRERLEG---LKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKE-------IEQLEQEEEKLKERLEE 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 838 ELDEVTSTKEALQCDILEMKntnektslenqTLSTRVEELSRSLHSKNEVHNEkdlviehenlrLSLEQRESELQDVRAE 917
Cdd:TIGR02169 742 LEEDLSSLEQEIENVKSELK-----------ELEARIEELEEDLHKLEEALND-----------LEARLSHSRIPEIQAE 799
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 918 LMLLKDSLEKSPSVKNDQLSLVKELEEKIESLEKESKDKDEKISKIKLvavrakkELDSNRKEAQTLRDELESVQSEKDR 997
Cdd:TIGR02169 800 LSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKE-------QIKSIEKEIENLNGKKEELEEELEE 872
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 998 LSASMKEFIqgaESYKNLLLEYDKQSEQLDVEKERANNFEHHIEDLTKQLRDSTCQYEKLTSDN---EDLLARIETLQAN 1074
Cdd:TIGR02169 873 LEAALRDLE---SRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELseiEDPKGEDEEIPEE 949
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958757302 1075 ARLLEaQILEVQRAKGVVEKELEAEKLQKEQKIKEHVSTTNELEELQLQFQKEKKQLQKTMQELELVKKDA 1145
Cdd:TIGR02169 950 ELSLE-DVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREV 1019
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
103-1118 |
2.02e-10 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 65.84 E-value: 2.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 103 MKQEVEDSVTKLEETQKEFEQSHrnyVREMESVKNELIA--------VHSEHSKEkaaLQRDLEGAVHRQAELLEQLKSQ 174
Cdd:TIGR01612 701 LKSKIDKEYDKIQNMETATVELH---LSNIENKKNELLDiiveikkhIHGEINKD---LNKILEDFKNKEKELSNKINDY 774
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 175 SDSEDNVKKLQEEIQNITAAFEEQTSCLQ-KQLEATSD-EKQQEIIHLQKVIEDNAQHYQKDINTFQEEI-------VQL 245
Cdd:TIGR01612 775 AKEKDELNKYKSKISEIKNHYNDQINIDNiKDEDAKQNyDKSKEYIKTISIKEDEIFKIINEMKFMKDDFlnkvdkfINF 854
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 246 RATHKEEVNELMSQMETLAKEHEAAV---------NKLKENRVTLCETSETIPENYQ--------------CES--ESL- 299
Cdd:TIGR01612 855 ENNCKEKIDSEHEQFAELTNKIKAEIsddklndyeKKFNDSKSLINEINKSIEEEYQnintlkkvdeyikiCENtkESIe 934
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 300 ---NEDTSDASQENQKCSVALQEDPFA-------EHTVYDKVRQLEDSLKE--LESQHSILKDEVTYMNNLKLKLEMDAQ 367
Cdd:TIGR01612 935 kfhNKQNILKEILNKNIDTIKESNLIEksykdkfDNTLIDKINELDKAFKDasLNDYEAKNNELIKYFNDLKANLGKNKE 1014
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 368 HIkdeFFHEREDLEFKINELLLAKEEQSYVVEKLKYEredLNRQLCCTVEQHNKEIQRLQEHHQKEISELSETFMSGSEK 447
Cdd:TIGR01612 1015 NM---LYHQFDEKEKATNDIEQKIEDANKNIPNIEIA---IHTSIYNIIDEIEKEIGKNIELLNKEILEEAEINITNFNE 1088
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 448 EKlalmfeiqglkeqcENLQHEKQEVVLNYESLREMMEIlqtelgesaGKISQEFETMKQQQASDVHELQQKLRTAFNEK 527
Cdd:TIGR01612 1089 IK--------------EKLKHYNFDDFGKEENIKYADEI---------NKIKDDIKNLDQKIDHHIKALEEIKKKSENYI 1145
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 528 DALLETINRLQGENEKLLSQELVSELESTMKNLkadnsmyLASLGQKDTLLQELEAKISSLAEekddfISKIKTSREEID 607
Cdd:TIGR01612 1146 DEIKAQINDLEDVADKAISNDDPEEIEKKIENI-------VTKIDKKKNIYDEIKKLLNEIAE-----IEKDKTSLEEVK 1213
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 608 DLHQKWEreQKLSVELREAAEQAAQHNSELRQRVSELTGKLDEIlREKSQNDQNIMVQMKTMTEDQEALS---SKIKSLY 684
Cdd:TIGR01612 1214 GINLSYG--KNLGKLFLEKIDEEKKKSEHMIKAMEAYIEDLDEI-KEKSPEIENEMGIEMDIKAEMETFNishDDDKDHH 1290
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 685 EENNRlHSEKVQLSRDlEALQSQQDFAYKEHVAEFEKKLQLMVEERDDLNKLLeNEQLQKSfvkTQLYEFLKQmrpsile 764
Cdd:TIGR01612 1291 IISKK-HDENISDIRE-KSLKIIEDFSEESDINDIKKELQKNLLDAQKHNSDI-NLYLNEI---ANIYNILKL------- 1357
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 765 dneeEDVVTVLKAVGESLVTVKEEKHNLVFEYDARvlelERRIKCLQE-----------ESVVQCEELRALVRD-SEQEK 832
Cdd:TIGR01612 1358 ----NKIKKIIDEVKEYTKEIEENNKNIKDELDKS----EKLIKKIKDdinleeckskiESTLDDKDIDECIKKiKELKN 1429
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 833 ILLRKELDEVTSTKEA--------LQCDILEMKNTNEKTSLENQ----------TLSTRVEELSRSLHSKNEVHNEKDLV 894
Cdd:TIGR01612 1430 HILSEESNIDTYFKNAdennenvlLLFKNIEMADNKSQHILKIKkdnatndhdfNINELKEHIDKSKGCKDEADKNAKAI 1509
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 895 IEHENLRLSLEQRESELQDVRAELMLlKDSLEKSpsvKNDQLSLVKELEEKIESLEKESKDKDEKISKIKLVAVRAKKEL 974
Cdd:TIGR01612 1510 EKNKELFEQYKKDVTELLNKYSALAI-KNKFAKT---KKDSEIIIKEIKDAHKKFILEAEKSEQKIKEIKKEKFRIEDDA 1585
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 975 DSNRKEAQTLRDELESVQSEKDRL------SASMKEFIQGAESYKNLL--LEYDKQSEQLDVEKERANNFEHHIEDLTKQ 1046
Cdd:TIGR01612 1586 AKNDKSNKAAIDIQLSLENFENKFlkisdiKKKINDCLKETESIEKKIssFSIDSQDTELKENGDNLNSLQEFLESLKDQ 1665
|
1050 1060 1070 1080 1090 1100 1110
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958757302 1047 LRDSTCQYEKLTSDNEDLLARIETLQANARLLEAQILEVQRAKGVVEK-ELEAEKLQKEQKIKEHVST--TNELE 1118
Cdd:TIGR01612 1666 KKNIEDKKKELDELDSEIEKIEIDVDQHKKNYEIGIIEKIKEIAIANKeEIESIKELIEPTIENLISSfnTNDLE 1740
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
861-1139 |
6.67e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.80 E-value: 6.67e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 861 EKTSLENQTLSTRVEELSRSLHSKNEVHNEKDLviEHENLRLSLEQRESELQDVRAELMLLKDSLEkspsvknDQLSLVK 940
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEA--ELEELEAELAELEAELEELRLELEELELELE-------EAQAEEY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 941 ELEEKIESLEKESKDKDEKISKIKLVAVRAKKELDSNRKEAQTLRDELESVQSEKDRLSAsmkEFIQGAESYKNLLLEYD 1020
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEE---ELEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1021 KQSEQLDVEKERANNFEHHIEDLTKQLRDSTCQYEKLTSDNEDLLARIETLQANARLLEAQILEVQRAKGVVEKELEAEK 1100
Cdd:COG1196 369 EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448
|
250 260 270
....*....|....*....|....*....|....*....
gi 1958757302 1101 LQKEQKIKEHVSTTNELEELQLQFQKEKKQLQKTMQELE 1139
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA 487
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
903-1149 |
2.81e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 60.55 E-value: 2.81e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 903 SLEQRESELQDVRAELMLLKDSLEKSPSVKNDQLSLVKELEEKIESLEKESKDKDEKISKIklvavraKKELDSNRKEAQ 982
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAAL-------EAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 983 TLRDELESVQSE-KDRLSASMKefiQGAESYKNLLLeydKQSEQLDVEKeRANNFEHHIEDLTKQLrdstcqyEKLTSDN 1061
Cdd:COG4942 94 ELRAELEAQKEElAELLRALYR---LGRQPPLALLL---SPEDFLDAVR-RLQYLKYLAPARREQA-------EELRADL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1062 EDLLARIETLQANARLLEAQILEVQRAKgvveKELEAEKLQKEQKIKEHVSTTNELEELQLQFQKEKKQLQKTMQELELV 1141
Cdd:COG4942 160 AELAALRAELEAERAELEALLAELEEER----AALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
....*...
gi 1958757302 1142 KKDAQQTT 1149
Cdd:COG4942 236 AAAAAERT 243
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
78-759 |
7.08e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 7.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 78 RLDALLLEKAETEQQCLCLKKENIKMKQEVEDSVTKLEETQKEFEQsHRNYVREMESVKNELIAVHSEHSKEKAALQRDL 157
Cdd:TIGR02168 226 ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEE-LRLEVSELEEEIEELQKELYALANEISRLEQQK 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 158 EGAVHRQAELLEQLKSQSDSEDNVKKLQEEIQNITAAFEEQTSCLQKQLEATSdEKQQEIIHLQKVIEDNAQHYQKDINT 237
Cdd:TIGR02168 305 QILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLE-AELEELEAELEELESRLEELEEQLET 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 238 FQEEIVQLRathkEEVNELMSQMETLAKEHEAAVNKLKENRVTLCETSETIPENYQCESESLNEDTSDASQENQKCSVAL 317
Cdd:TIGR02168 384 LRSKVAQLE----LQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERL 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 318 QEdpfAEHTVYDKVRQLEDSLKELESQHSILKDEVTYMNNLKLKLEMDAQHIKdEFFHEREDLEFKINELL-LAKEEQSY 396
Cdd:TIGR02168 460 EE---ALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVK-ALLKNQSGLSGILGVLSeLISVDEGY 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 397 VVEKLKYEREDLNRQLCCTVEQHNKEIQRLQEHHQK-----EISELSETFMSGSEKEKLALMFEIQGLKEQCENLQhEKQ 471
Cdd:TIGR02168 536 EAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGrvtflPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFD-PKL 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 472 EVVLNY--------ESLREMMEILQtELGESAGKISQEFETMKQQQASdvhelqqklrtAFNEKDALLETINRlqgenek 543
Cdd:TIGR02168 615 RKALSYllggvlvvDDLDNALELAK-KLRPGYRIVTLDGDLVRPGGVI-----------TGGSAKTNSSILER------- 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 544 llSQELvSELESTMKNLKADNSMYLASLGQKDTLLQELEAKISSLAEEKDDFISKIKTSREEIDDLHQKWEREQKLSVEL 623
Cdd:TIGR02168 676 --RREI-EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL 752
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 624 REAAEQAAQHNSELRQRVSELTGKLDEILREKSQNDQnimvQMKTMTEDQEALSSKIKSLYEENNRLHSEKVQLSRDLEA 703
Cdd:TIGR02168 753 SKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA----QIEQLKEELKALREALDELRAELTLLNEEAANLRERLES 828
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958757302 704 LQSQQDfAYKEHVAEFEKKLQLMVEERDDLNKLLENEQLQKSFVKTQLYEFLKQMR 759
Cdd:TIGR02168 829 LERRIA-ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERA 883
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
446-951 |
1.66e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.18 E-value: 1.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 446 EKEKLALMFEIQGLKEQCENLQHEKQEVVLNYESLREMMEILQTELGESAGKISQEFETMKQQQA------SDVHELQQK 519
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAeeyellAELARLEQD 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 520 LRTAFNEKDALLETINRLQGENEKLLSQ-----ELVSELESTMKNLKADNSMYLASLGQKDTLLQELEAKISSLAEEKDD 594
Cdd:COG1196 304 IARLEERRRELEERLEELEEELAELEEEleeleEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEE 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 595 F-------ISKIKTSREEIDDLHQKWEREQKLSVELREAAEQAAQHNSELRQRVSELTGKLDEILREKSQNDQNIMVQMK 667
Cdd:COG1196 384 LaeelleaLRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLE 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 668 TMTEDQEALSSKIKSLYEENNRLHSEKVQLSRDLEALQSQQDFAY----KEHVAEFEKKLQLMVEERDD----------- 732
Cdd:COG1196 464 LLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEgvkaALLLAGLRGLAGAVAVLIGVeaayeaaleaa 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 733 LNKLLENEQLQKSFVKTQLYEFLKQ-------------MRPSILEDNEEEDVVTVLKAVGESLVTVKEEKHNLVFE---- 795
Cdd:COG1196 544 LAAALQNIVVEDDEVAAAAIEYLKAakagratflpldkIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGdtll 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 796 ---YDARVLELERRIKCLQEESVVQCEELRALVRDSEQEKILLRKELDEVTSTKEALQCDILEMKNTNEKTSLENQTLST 872
Cdd:COG1196 624 grtLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEE 703
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958757302 873 RVEELSRSLHSKNEVHNEKDLVIEHENLRLSLEQRESELQDVRAELMLLKDSLEKSPSVKnDQLSLVKELEEKIESLEK 951
Cdd:COG1196 704 EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE-ELERELERLEREIEALGP 781
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
587-1229 |
2.86e-08 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 58.55 E-value: 2.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 587 SLAEEKDDFISKIKTSREEIDDLHQKWEREQKLSVELREAAE---QAAQHNSELRQRVSELtgKLDEILREKSQNDQNIM 663
Cdd:COG5022 804 SLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEvliQKFGRSLKAKKRFSLL--KKETIYLQSAQRVELAE 881
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 664 VQMKTMTEDqealSSKIKSLYEENNRLHSEKVQLSRDLEALQSQQDFAYKEHVAEFEKKLQLMVEERDDLNKLLENEQLQ 743
Cdd:COG5022 882 RQLQELKID----VKSISSLKLVNLELESEIIELKKSLSSDLIENLEFKTELIARLKKLLNNIDLEEGPSIEYVKLPELN 957
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 744 KsfvktqLYEFLKQMRPSILE-----DNEEEDVVTVLKAVGESLVTVKE----EKHNLVFEYDARVLELERR-------- 806
Cdd:COG5022 958 K------LHEVESKLKETSEEyedllKKSTILVREGNKANSELKNFKKElaelSKQYGALQESTKQLKELPVevaelqsa 1031
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 807 --IKCLQEESVVQCEELRALVRDSEQEKILLRKELDEVTSTKEALQCDILEMKNTNEKTSLENQTLSTRVEELSRSLHSK 884
Cdd:COG5022 1032 skIISSESTELSILKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKP 1111
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 885 nevhNEKDLVIEHENLRLSLEQRESELqdVRAELMLLKDS------LEKSPSVKNDQLSLVKELEEKIESLEKESKDKDE 958
Cdd:COG5022 1112 ----ANVLQFIVAQMIKLNLLQEISKF--LSQLVNTLEPVfqklsvLQLELDGLFWEANLEALPSPPPFAALSEKRLYQS 1185
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 959 KISKIKLvavrakKELDSnrkEAQTLRDELESVQSeKDRLSASMKEFIQGAESYKNLLLEYDKQ-SEQLDVEKERANNFE 1037
Cdd:COG5022 1186 ALYDEKS------KLSSS---EVNDLKNELIALFS-KIFSGWPRGDKLKKLISEGWVPTEYSTSlKGFNNLNKKFDTPAS 1255
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1038 HHIEDL---TKQLRDSTC----QYEKLTSDNEDLLARIETLQANARLLEAQILEVQRAKGVVEKELEAEKLQKEQKIKEH 1110
Cdd:COG5022 1256 MSNEKLlslLNSIDNLLSsyklEEEVLPATINSLLQYINVGLFNALRTKASSLRWKSATEVNYNSEELDDWCREFEISDV 1335
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1111 VSTTNELEELQLQFQKEKKQLQKTMQELELVK--KDAQQTTLMNM-EIADYE-----RLMKELNQKLTNKNSKIEDLE-Q 1181
Cdd:COG5022 1336 DEELEELIQAVKVLQLLKDDLNKLDELLDACYslNPAEIQNLKSRyDPADKEnnlpkEILKKIEALLIKQELQLSLEGkD 1415
|
650 660 670 680
....*....|....*....|....*....|....*....|....*...
gi 1958757302 1182 EMKIQKQKQETLQEEMTSLQSSVQHYEEKNAQIKQLLVKTKKELADAK 1229
Cdd:COG5022 1416 ETEVHLSEIFSEEKSLISLDRNSIYKEEVLSSLSALLTKEKIALLDRK 1463
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
375-749 |
4.82e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.77 E-value: 4.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 375 HEREDLEFKINELLLAKEEQSYVVEKLKYEREDLNRQLcctvEQHNKEIQRLQEHHQKEISELSEtfmsgsekeklaLMF 454
Cdd:TIGR02169 681 ERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKI----GEIEKEIEQLEQEEEKLKERLEE------------LEE 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 455 EIQGLKEQCENLQHEKQEVVLNYESLREMMEILQTELGESAGKISQEFETMKQQQASDVHELQQKLRTAFNEKDALLeti 534
Cdd:TIGR02169 745 DLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKL--- 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 535 NRLQGENEKLlsQELVSELESTMKNLKADNSMYLASLGQKDTLLQELEAKISSLAEEKDDFISKIKTSREEIDDLHQKWE 614
Cdd:TIGR02169 822 NRLTLEKEYL--EKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLR 899
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 615 REQKLSVELREAAEQAAQHNSELRQRVSELTGKLDEILREKSQndqniMVQMKTMTEDQEALSSKIKSLYEENNRLHSEK 694
Cdd:TIGR02169 900 ELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGE-----DEEIPEEELSLEDVQAELQRVEEEIRALEPVN 974
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958757302 695 VQLSRDLEALQSQQDfaykehvaEFEKKLQLMVEERDDLNKLLE--NEQLQKSFVKT 749
Cdd:TIGR02169 975 MLAIQEYEEVLKRLD--------ELKEKRAKLEEERKAILERIEeyEKKKREVFMEA 1023
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
518-1082 |
6.66e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.25 E-value: 6.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 518 QKLRTAFNEKDALLETINRLQGENEKLLSQELVSELESTMKNLKADNSMYLASLGQKDTLLQELEAKISSLAEEKDDFIS 597
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 598 KIKTSREEIDDLHQKWEREQKLSVELREAAEQAAQHNSELRQRVSELTGKLDEILREKSQNDQNIMVQMKTMTEDQEALS 677
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 678 SKIKSLYEENNRLH---SEKVQLSRDLEALQSQQDFAYKEHVAEFEKKLQLMVEERDDLNKLLENEQLQKSFVKT--QLY 752
Cdd:COG1196 376 EAEEELEELAEELLealRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEeaELE 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 753 EFLKQMRPSILEDNEEEDVVTVLKAVGESLVTVKEEKHNLVFEYDARVLELERRIKCLQEesvvqcEELRALVRDSEQEK 832
Cdd:COG1196 456 EEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL------LAGLRGLAGAVAVL 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 833 ILLRKELDEVTSTKEALQCDILEMKNTNEKTSLENQTLSTRVEELSRSLHSKNEVHNEKDLVIEHENLRLSLEQRESELQ 912
Cdd:COG1196 530 IGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLR 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 913 DVRAELMLLKDSLEKSPSVKNDQLSLVKELEEKIESLEKESKDKDEKISKIKLVAVRAKKELDSNRKEAQTLRDELESVQ 992
Cdd:COG1196 610 EADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLA 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 993 SEKDRLSASMKEFIQGAESYKNLLLEYDKQSEQLDVEKERANNFEHHIEDLTKQLRDSTcqyEKLTSDNEDLLARIETLQ 1072
Cdd:COG1196 690 EEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL---EEEALEELPEPPDLEELE 766
|
570
....*....|
gi 1958757302 1073 ANARLLEAQI 1082
Cdd:COG1196 767 RELERLEREI 776
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
571-1222 |
9.44e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 56.57 E-value: 9.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 571 LGQKDTLLQELEAKISSLAEEKDDFISKIKTSREEIDDLHQKWEREQ----KLSVELREAAEQAAQHNSELRQRVSELTg 646
Cdd:TIGR04523 49 LKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKdkinKLNSDLSKINSEIKNDKEQKNKLEVELN- 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 647 KLDEILREKSQNDQNIMVQMKTMTEDQEALSSKIKSLYEENNRLHSEKVQLSRDLEALQSQQDFAYKEHVAEfeKKLQLM 726
Cdd:TIGR04523 128 KLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKL--ELLLSN 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 727 VEERDDLNKLLENEQLQKSFVKTQLYEFLKQmrpsilEDNEEEDVVTVLKAVGESLVTVKEEKHNLVFEYDARVLELERR 806
Cdd:TIGR04523 206 LKKKIQKNKSLESQISELKKQNNQLKDNIEK------KQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQN 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 807 IKCLQE-ESVVQCEELRALVRDSEQEKILLRKELDEVTSTKEALQCDILEMKNTNEKTSLENQTLSTRVEELSRSLHSKN 885
Cdd:TIGR04523 280 NKKIKElEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENS 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 886 EVHNEkdlviehenlrlsLEQRESELQDVRAELMLLKDSLEKSPSVKNDqlslvkeLEEKIESLEKESKDKDEKISKIKl 965
Cdd:TIGR04523 360 EKQRE-------------LEEKQNEIEKLKKENQSYKQEIKNLESQIND-------LESKIQNQEKLNQQKDEQIKKLQ- 418
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 966 vavrakKELDSNRKEAQTLRDELESVQSEKDRLSasmKEFIQGAESYKNLLLEYDKQSEQLDVEKERANNFEHHIEDLTK 1045
Cdd:TIGR04523 419 ------QEKELLEKEIERLKETIIKNNSEIKDLT---NQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQK 489
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1046 QLRDSTCQYEKLTSDNEDLLARIETLQANARLLEAQILEVQRAKgvVEKELEAEKLQKEQKIKEHVSTTNELEELQLQFQ 1125
Cdd:TIGR04523 490 ELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEK--KEKESKISDLEDELNKDDFELKKENLEKEIDEKN 567
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1126 KEKKQLQKTMQELELVKKDAQQttlmnmEIADYERLMKELNQKLTNKNSKIEDLEQEMKIQKQKQETLQEEMTSLQSSVQ 1205
Cdd:TIGR04523 568 KEIEELKQTQKSLKKKQEEKQE------LIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKN 641
|
650
....*....|....*..
gi 1958757302 1206 HYEEKNAQIKQLLVKTK 1222
Cdd:TIGR04523 642 KLKQEVKQIKETIKEIR 658
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
614-1184 |
1.14e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.48 E-value: 1.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 614 EREQKLSVELREA-AEQAAQHNSELRQRVSELTGKLDEILREKSQndqnIMVQMKTMTEDQEALSSKIKSLYEENNRLHS 692
Cdd:COG1196 213 ERYRELKEELKELeAELLLLKLRELEAELEELEAELEELEAELEE----LEAELAELEAELEELRLELEELELELEEAQA 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 693 EKVQLSRDLEALQSQQDFAyKEHVAEFEKKLQLMVEERDDLNKLLENEQLQKSFVKTQLYEFLKQMRPSILEDNEEEDVV 772
Cdd:COG1196 289 EEYELLAELARLEQDIARL-EERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 773 TVLKAVGESLVTVKEEKHNLVFEYDARVLELERRIKCLQEesvvQCEELRALVRDSEQEKILLRKELDEVTSTKEALQCD 852
Cdd:COG1196 368 LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEE----AEEALLERLERLEEELEELEEALAELEEEEEEEEEA 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 853 ILEMKNTNEKTSLENQTLSTRVEELSRSLHSKNEVHNEKDLVIEHENLRLSLEQRESELQDVRAE---LMLLKDSLEKSP 929
Cdd:COG1196 444 LEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEgvkAALLLAGLRGLA 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 930 SVKNDQLSLVKELEEKIESLEKESKDkdEKISKIKLVAVRAKKELDSNRKEAQTLRdELESVQSEKDRLSASMKEFIQGA 1009
Cdd:COG1196 524 GAVAVLIGVEAAYEAALEAALAAALQ--NIVVEDDEVAAAAIEYLKAAKAGRATFL-PLDKIRARAALAAALARGAIGAA 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1010 ESYKNLLLEYDKQSEQLDVEKERANNFEHHIEDLTKQLRDSTCQYEKLTSDNEDLLARIETLQANARLLEAQILEVQRAK 1089
Cdd:COG1196 601 VDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAE 680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1090 GVVEKELEAEKLQKEQKIKEHVSTTNELEELQLQFQKEKKQLQKTMQELELVKKDAQQTTLMNMEIADYERLMKELNQKL 1169
Cdd:COG1196 681 LEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPP 760
|
570
....*....|....*
gi 1958757302 1170 tnknsKIEDLEQEMK 1184
Cdd:COG1196 761 -----DLEELERELE 770
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
965-1236 |
1.64e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.23 E-value: 1.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 965 LVAVRAKKELDSNRKEAQTLRDELESVQSEKDRLSASMKEFIQGAESYKNLLLEYDKQSEQLDVEKERANnfeHHIEDLT 1044
Cdd:TIGR02169 667 LFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLK---ERLEELE 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1045 KQLRDSTCQYEKLTSDNEDLLARIETLQANARLLEAQILEVQRA---KGVVEKELEAEKLQKEQK-----IKEHVSTTNE 1116
Cdd:TIGR02169 744 EDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARlshSRIPEIQAELSKLEEEVSriearLREIEQKLNR 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1117 LEELQLQFQKEKKQLQKTMQELELVKKDAQQttlmnmEIADYERLMKELNQKLTNKNSKIEDLEQEMKIQKQKQETLQEE 1196
Cdd:TIGR02169 824 LTLEKEYLEKEIQELQEQRIDLKEQIKSIEK------EIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQ 897
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1958757302 1197 MTSLQSSVQHYEEKnAQIKQLLVKTKKELADAKQAETDHL 1236
Cdd:TIGR02169 898 LRELERKIEELEAQ-IEKKRKRLSELKAKLEALEEELSEI 936
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
934-1300 |
7.80e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 7.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 934 DQLSLVKELEEKIESLEKESKDKDEKISKIKLVAVRAKKELDSNRKEaqtlRDELESVQSEKDRlsasmKEFIQGAESYK 1013
Cdd:TIGR02169 160 DEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRE----REKAERYQALLKE-----KREYEGYELLK 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1014 NLLlEYDKQSEQLDVEKERAnnfEHHIEDLTKQLRDSTCQYEKLTSDNEDLLARIE--------TLQANARLLEAQILEV 1085
Cdd:TIGR02169 231 EKE-ALERQKEAIERQLASL---EEELEKLTEEISELEKRLEEIEQLLEELNKKIKdlgeeeqlRVKEKIGELEAEIASL 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1086 QRAkgVVEKELEAEKLQKEQK--IKEHVSTTNELEELQLQFQKEKKQLQKTMQElelVKKDAQQTTLMNMEIADYERLMK 1163
Cdd:TIGR02169 307 ERS--IAEKERELEDAEERLAklEAEIDKLLAEIEELEREIEEERKRRDKLTEE---YAELKEELEDLRAELEEVDKEFA 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1164 ELNQKLTNKNSKIEDLEQEMkiqkqkqETLQEEMTSLQSSVQHYEEKNAQIKQLLVKTKKELADAKQAETDHLLLQASLK 1243
Cdd:TIGR02169 382 ETRDELKDYREKLEKLKREI-------NELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQE 454
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958757302 1244 GELEASQQQVEVYKIQLAEMTSEKHKIHEHLKTSaeqhQRTLSAYQQRVVALQEESR 1300
Cdd:TIGR02169 455 WKLEQLAADLSKYEQELYDLKEEYDRVEKELSKL----QRELAEAEAQARASEERVR 507
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
77-832 |
8.85e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 8.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 77 ERLDALLLEKAETEQQCLCLKKE-NIKMKQEVEDSVTKLEETQKEFEQSHRNYVREMESVKNELIAVHSEHSK----EKA 151
Cdd:TIGR02169 211 ERYQALLKEKREYEGYELLKEKEaLERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDlgeeEQL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 152 ALQRDLeGAVHRQAELLEqlKSQSDSEDNVKKLQEEIQnitaafeeqtsclqkQLEATSDEKQQEIIHLQKVIEDnaqhY 231
Cdd:TIGR02169 291 RVKEKI-GELEAEIASLE--RSIAEKERELEDAEERLA---------------KLEAEIDKLLAEIEELEREIEE----E 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 232 QKDINTFQEEIVQLrathKEEVNELMSQMETLAKEHEAAVNKLKENRVTLCETSETIPE---NYQCESESLNEDTSDASQ 308
Cdd:TIGR02169 349 RKRRDKLTEEYAEL----KEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINElkrELDRLQEELQRLSEELAD 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 309 ENQKCSVALQEDPFAEHTVYDKVRQLEDSLKELESQHSILKDEVTYMNNLKLKLemdaQHIKDEFFHEREDLEFKINELL 388
Cdd:TIGR02169 425 LNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEY----DRVEKELSKLQRELAEAEAQAR 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 389 LAKEEQSY---VVEKLKYERE---DLNRQLCCTVEQH-----------------------NKEIQRLQEHHQKEISELSE 439
Cdd:TIGR02169 501 ASEERVRGgraVEEVLKASIQgvhGTVAQLGSVGERYataievaagnrlnnvvveddavaKEAIELLKRRKAGRATFLPL 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 440 TFMSGSEKEKLALMFEiqGLKEQCENLQHEKQE-------------VVLNYESLREMMEI-----LQTELGESAGKI--- 498
Cdd:TIGR02169 581 NKMRDERRDLSILSED--GVIGFAVDLVEFDPKyepafkyvfgdtlVVEDIEAARRLMGKyrmvtLEGELFEKSGAMtgg 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 499 ---SQEFETMKQQQASDVHELQQKLRTAFNEKDALLETINRLQGENEKLLSqeLVSELESTMKNLKADNSMYLASLGQKD 575
Cdd:TIGR02169 659 sraPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQ--ELSDASRKIGEIEKEIEQLEQEEEKLK 736
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 576 TLLQELEAKISSLAEEKDDFISKIKTSREEIDDLHQKWEREQKLSVEL-----REAAEQAAQHNSELRQRVSELTGKLDE 650
Cdd:TIGR02169 737 ERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLearlsHSRIPEIQAELSKLEEEVSRIEARLRE 816
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 651 I-------------LREKSQNDQNIMV----QMKTMTEDQEALSSKIKSLYEENNRLHSEKVQLSRDLEALQSQQDFAyK 713
Cdd:TIGR02169 817 IeqklnrltlekeyLEKEIQELQEQRIdlkeQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDEL-E 895
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 714 EHVAEFEKKLQLMVEERDDLNKLLENEQLQKSFVKTQLYEF---LKQMRPSILEDNEEEDVVTVLKAVGESLVTVKEEKH 790
Cdd:TIGR02169 896 AQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIedpKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNM 975
|
810 820 830 840
....*....|....*....|....*....|....*....|....*
gi 1958757302 791 NLVFEYD---ARVLELERRIKCLQEESvvqcEELRALVRDSEQEK 832
Cdd:TIGR02169 976 LAIQEYEevlKRLDELKEKRAKLEEER----KAILERIEEYEKKK 1016
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
416-998 |
1.10e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 53.20 E-value: 1.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 416 VEQHNKEIQRLQEHHQKEISELSETfMSGSEKEKLALMFEIQGLKEQCENlqhEKQEVVLNYESLREMMEILQTELGESA 495
Cdd:pfam15921 262 LQQHQDRIEQLISEHEVEITGLTEK-ASSARSQANSIQSQLEIIQEQARN---QNSMYMRQLSDLESTVSQLRSELREAK 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 496 GKISQEFETMKQQQASDVHELQQklrtAFNEKDALLETINRLQGENEKLLSQELVSELESTMKNlKADNSMYLASLGQKD 575
Cdd:pfam15921 338 RMYEDKIEELEKQLVLANSELTE----ARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEK-EQNKRLWDRDTGNSI 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 576 TllqeleakisslaeekddfiskIKTSREEIDDLHQKWEREQKLSVELR-------EAAEQAAQHNSELRQRVSELTGKL 648
Cdd:pfam15921 413 T----------------------IDHLRRELDDRNMEVQRLEALLKAMKsecqgqmERQMAAIQGKNESLEKVSSLTAQL 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 649 DEILREKSQNDQNIMVQMKTMTEDQEALSSKIKSLYEENNRLHSEKVQLSRdleaLQSQQDFAYKEhvaefekkLQLMVE 728
Cdd:pfam15921 471 ESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITK----LRSRVDLKLQE--------LQHLKN 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 729 ERDDL-NKLLENEQLQKSFV-KTQLYEFLKQmrpsilednEEEDVVTVLKAVGESLVTVKEEKHNLVFEYDARVLELERr 806
Cdd:pfam15921 539 EGDHLrNVQTECEALKLQMAeKDKVIEILRQ---------QIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQE- 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 807 IKCLQEESVVQCEELRALVRDSEQEKILLRKELDEVTSTKEALQCDILEMKNTNEKTSLENQTLSTRVEELSRSLHSKNE 886
Cdd:pfam15921 609 FKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSE 688
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 887 vhnekDLVIEHENLRLSLEQRESELQDVRAELMLLKDS----------LEKSPSVKNDQlslVKELEEKIESLEKESKDK 956
Cdd:pfam15921 689 -----EMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSdghamkvamgMQKQITAKRGQ---IDALQSKIQFLEEAMTNA 760
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 1958757302 957 DEKISKIKLVAVRAKKELDSNRKEAQTLRDELESVQSEKDRL 998
Cdd:pfam15921 761 NKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRL 802
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1040-1253 |
1.40e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.07 E-value: 1.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1040 IEDLTKQLRDSTCQYEKLTSDNEDLLARIETLQANARLLEAQILEVQRAKGVVEKELEAEKLQKEQKIKEHVSTTNELEE 1119
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1120 LQLQFQKEKKQLQKTMQ----ELELVKKDAQQTTLMNMEIADY----ERLMKELNQKLTNKNSKIEDLEQEMKIQKQKQE 1191
Cdd:COG4942 102 QKEELAELLRALYRLGRqpplALLLSPEDFLDAVRRLQYLKYLaparREQAEELRADLAELAALRAELEAERAELEALLA 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1958757302 1192 TLQEEMTSLQSSVQHYEEKNAQIKQLLVKTKKELADAKQAETDHLLLQASLKGELEASQQQV 1253
Cdd:COG4942 182 ELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
869-1129 |
1.55e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 52.62 E-value: 1.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 869 TLSTRVEELSRSLHSKNEVHNEkDLVIEHENLRLSLEqrESELQDVRAELMLLKDSLEK--------SPSVKNDQLSLVK 940
Cdd:PRK05771 13 TLKSYKDEVLEALHELGVVHIE-DLKEELSNERLRKL--RSLLTKLSEALDKLRSYLPKlnplreekKKVSVKSLEELIK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 941 ELEEKIESLEKESKDKDEKISKIKlvavRAKKELDSNRKEAQTLRD---------ELESVQSEKDRLSASMKEFIQGAES 1011
Cdd:PRK05771 90 DVEEELEKIEKEIKELEEEISELE----NEIKELEQEIERLEPWGNfdldlslllGFKYVSVFVGTVPEDKLEELKLESD 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1012 YKNllLEYDKQSEQLD-----VEKErannfehHIEDLTKQLRDstCQYEKL-TSDNEDLLARIETlqanarlLEAQILEV 1085
Cdd:PRK05771 166 VEN--VEYISTDKGYVyvvvvVLKE-------LSDEVEEELKK--LGFERLeLEEEGTPSELIRE-------IKEELEEI 227
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1958757302 1086 QRAKGVVEKELE--AEKLQKEQK-IKEHVSTTNELEELQLQFQKEKK 1129
Cdd:PRK05771 228 EKERESLLEELKelAKKYLEELLaLYEYLEIELERAEALSKFLKTDK 274
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
497-1260 |
2.92e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.90 E-value: 2.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 497 KISQEFETMKQQQASDVHELQQKLRTAFNEKDALletinrlqgENEKLLSQELVSELESTMKNLKADNSMYLASLGQKdt 576
Cdd:pfam02463 177 KLIEETENLAELIIDLEELKLQELKLKEQAKKAL---------EYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQEL-- 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 577 lLQELEAKISSLAEEKDDFISKIKTSREEIDDLHQKWEREQKLSVELREAAEQAAQHNSELRQRVSELTGKLDEILREKS 656
Cdd:pfam02463 246 -LRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKK 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 657 QNDQNIMVQMKTMTEDQEALSSKIKSLYEENNRLhSEKVQLSRDLEALQSQQDFAYKEHVAEFEKKLQLMVEERDDLNKL 736
Cdd:pfam02463 325 KAEKELKKEKEEIEELEKELKELEIKREAEEEEE-EELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 737 LENEQLQKSFVKTQLYEFLKQMRPSILEDNEEEDVVTVLKAVgESLVTVKEEKHNLVFEYDARVLELERRIKCLQEESVV 816
Cdd:pfam02463 404 EKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGK-LTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 817 QCEELRALVRDSEQEKILLRKELDEVTSTKEALQCDILEMKNTNEKTSLENQTLSTRVEELSRSLHSKNEVHNEKDLVIE 896
Cdd:pfam02463 483 QEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 897 HENLRLSLEQRESELQDVRAELMLLKDSLEKSPSVKNDQLSLVKELEEKIESLEKESKDK--DEKISKIKLVAVRAKKEL 974
Cdd:pfam02463 563 RQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAkvVEGILKDTELTKLKESAK 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 975 DSNRKEAQTLRDELESVQSEKDRLSASMKEFIQGAESYKNLLLEYDKQ-SEQLDVEKERANNFEHHIEDLTKQLRDSTCQ 1053
Cdd:pfam02463 643 AKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAkEEILRRQLEIKKKEQREKEELKKLKLEAEEL 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1054 YEKLTSDNEDLLARIETLQANARLLEAQILEVQRAKGVVEKELEAEKLQKEQKIKEHVSTTNELEELQLQFQKEKKQLQK 1133
Cdd:pfam02463 723 LADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEE 802
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1134 TMQELELVKKDAQQTTLMNMEIadyeRLMKELNQKLTNKNSKIEDLEQEMKIQKQKQETLQEEMTSLQSSVQHYEEKNAQ 1213
Cdd:pfam02463 803 LRALEEELKEEAELLEEEQLLI----EQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEE 878
|
730 740 750 760
....*....|....*....|....*....|....*....|....*..
gi 1958757302 1214 IKQLLVKTKKELADAKQAETDHLLLQASLKGELEASQQQVEVYKIQL 1260
Cdd:pfam02463 879 LEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKE 925
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
603-1013 |
3.34e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 3.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 603 REEIDDLHQKWEREQKLSVELREAaEQAAQHNSELRQRVSELTGKLDEILREKSQNDQNIMVQMKTMTEDQEALSSKIKS 682
Cdd:TIGR02169 156 RKIIDEIAGVAEFDRKKEKALEEL-EEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEA 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 683 LYEENNRLHSEKVQLSRDLEALQSQQDfaykEHVAEFEKKLQLMVEERDDLNKLLENEQLQksfVKTQLYEFLKQMrpSI 762
Cdd:TIGR02169 235 LERQKEAIERQLASLEEELEKLTEEIS----ELEKRLEEIEQLLEELNKKIKDLGEEEQLR---VKEKIGELEAEI--AS 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 763 LEDNEEEdvvtvlkavgeslvtvkeekhnlvfeYDARVLELERRIKCLQEESVVQCEELRALVRDSEQEKILLRKELDEV 842
Cdd:TIGR02169 306 LERSIAE--------------------------KERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEY 359
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 843 TSTKEALQCDILEMKNTNEKTSLENQTLSTRVEELSRSLHSKNEVHNEKDLVIEhenlrlSLEQRESELQDVRAELMLLK 922
Cdd:TIGR02169 360 AELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQE------ELQRLSEELADLNAAIAGIE 433
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 923 DSLEKSPSVKNDQLSLVKELEEKIESLEKESKDKDEKISKIKlvavrakkeldsnrKEAQTLRDELESVQSEKDRLSASM 1002
Cdd:TIGR02169 434 AKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLK--------------EEYDRVEKELSKLQRELAEAEAQA 499
|
410
....*....|.
gi 1958757302 1003 KEFIQGAESYK 1013
Cdd:TIGR02169 500 RASEERVRGGR 510
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
704-1276 |
5.19e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.27 E-value: 5.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 704 LQSQQDFAYKEHVAEFEKKLQLMVEERDDLNKLLENEQLQKSFVKTQL------YEFLKQMRPSILEDNEEE-------- 769
Cdd:pfam15921 100 LHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLqntvheLEAAKCLKEDMLEDSNTQieqlrkmm 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 770 -DVVTVLKAVGESLVTVKEEKHNLVFEYDAR---------------VLELERRIKCLQEESVVQCEELRALVRDSEQE-K 832
Cdd:pfam15921 180 lSHEGVLQEIRSILVDFEEASGKKIYEHDSMstmhfrslgsaiskiLRELDTEISYLKGRIFPVEDQLEALKSESQNKiE 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 833 ILLRKELDEVTSTKEALQCDILEMKNTNEKTSLENQTLSTRVEELSRSLHSKNEVHnekdlVIEHENLRLSLEQRESELQ 912
Cdd:pfam15921 260 LLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMY-----MRQLSDLESTVSQLRSELR 334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 913 DVRAELMLLKDSLEKSPSVKNDQLSlvkELEEKIESLEKESKDKDEKISKIKLVAVRAKKELDSNRKEAQT--------- 983
Cdd:pfam15921 335 EAKRMYEDKIEELEKQLVLANSELT---EARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRlwdrdtgns 411
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 984 -----LRDELESVQSEKDRLSA---SMKEFIQGaeSYKNLLLEYDKQSEQLDVEKERANNFEHHIEDLTKQLRDSTCQYE 1055
Cdd:pfam15921 412 itidhLRRELDDRNMEVQRLEAllkAMKSECQG--QMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKM 489
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1056 KLTSDNEDLLARIETLQANARLLEAQILEVQRAKGVVEKEL-EAEKLQKEQKIKEHVSTtnELEELQLQFQKEKKQLQKT 1134
Cdd:pfam15921 490 TLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLqELQHLKNEGDHLRNVQT--ECEALKLQMAEKDKVIEIL 567
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1135 MQELE----LVKKDAQQTTLMNMEIADYER-------LMKELNQKLTNKNSKIEDLEQEMKIQKQKQETLQEEMTSLQSS 1203
Cdd:pfam15921 568 RQQIEnmtqLVGQHGRTAGAMQVEKAQLEKeindrrlELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRA 647
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958757302 1204 VQHYEEKNaqiKQLLVKTKKELADAKQAETDHLLLQASLKGELEASQQQVEVYKIQLAEMTSEKHKIHEHLKT 1276
Cdd:pfam15921 648 VKDIKQER---DQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKS 717
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
790-1102 |
8.28e-06 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 50.29 E-value: 8.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 790 HNLVFEYDARVLELERRIKCLQEESVVQCEELRALVRDSEQEKILLRK-------ELDEVTSTKEALQ--CDILEMK--N 858
Cdd:PLN02939 102 MQRDEAIAAIDNEQQTNSKDGEQLSDFQLEDLVGMIQNAEKNILLLNQarlqaleDLEKILTEKEALQgkINILEMRlsE 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 859 TNEKTSLENQTlSTRVEELSRSLhskneVHNEKDLVIEHENLRLSLEQRESELQDVRAELMLLKDSLEkspsVKNDQLSL 938
Cdd:PLN02939 182 TDARIKLAAQE-KIHVEILEEQL-----EKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQ----FLKAELIE 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 939 VKELEEKIESLEKESKDKDEKISKIKLVAVRAKKE-LDSNRKEAQTLRDELESVQSEKDRLSASMKEFIQGAESYKNLLL 1017
Cdd:PLN02939 252 VAETEERVFKLEKERSLLDASLRELESKFIVAQEDvSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRD 331
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1018 EYDKQSEQLdvEKERANNFEHHIEDLTKQlrdstcqyeKLTSDNEDLLARIETLQANARLLEAQILEVQRAKGVVEKELE 1097
Cdd:PLN02939 332 KVDKLEASL--KEANVSKFSSYKVELLQQ---------KLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESK 400
|
....*
gi 1958757302 1098 AEKLQ 1102
Cdd:PLN02939 401 KRSLE 405
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
820-1216 |
9.31e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.04 E-value: 9.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 820 ELRALVRDSEQEKILLRKELDEVTSTKEALQCDILEMKNTNEKTSLENQTLSTRVEELSRSLHSKNEVHNEKD-LVIEHE 898
Cdd:PRK02224 203 DLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREeLAEEVR 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 899 NLRLSLEQRESELQDVRAELMLlkDSLEkspsvkndqlslVKELEEKIESLEKESKDKDEKISKIKLVAVRAKKELDSNR 978
Cdd:PRK02224 283 DLRERLEELEEERDDLLAEAGL--DDAD------------AEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLR 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 979 KEAQTLRDELESVQSEKDRLSAsmkefiqgaesyknlllEYDKQSEQLDVEKERANNFEHHIEDLTKQLRDSTCQYEKLT 1058
Cdd:PRK02224 349 EDADDLEERAEELREEAAELES-----------------ELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAE 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1059 SDNEDLLARIETLQANARLLEAQILEVQRAKGVVEKELEAEKLQK-EQKIKE--HVSTTNELEELQLQFQKEKKQLQKTM 1135
Cdd:PRK02224 412 DFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPEcGQPVEGspHVETIEEDRERVEELEAELEDLEEEV 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1136 QELE--------LVKKDAQQTTLMNME------IADYERLMKELNQKLTNKNSKIEDLEQEMKIQKQKQETLQEEMTSLQ 1201
Cdd:PRK02224 492 EEVEerleraedLVEAEDRIERLEERRedleelIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAR 571
|
410
....*....|....*
gi 1958757302 1202 SSVQHYEEKNAQIKQ 1216
Cdd:PRK02224 572 EEVAELNSKLAELKE 586
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
204-963 |
1.42e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 1.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 204 KQLEATSDEKQQEIIHLQKVIEDNAQHYQKDINTFQEEIVQLRATHKEEVNELMSQMETLAKEHEAAVNKLKENRVTLCE 283
Cdd:TIGR02169 240 EAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELED 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 284 TSETIP--------------------ENYQCESESLNEDTSDASQENQKCSVALQEDPFAEHTVYDKVRQLEDSLKELES 343
Cdd:TIGR02169 320 AEERLAkleaeidkllaeieelereiEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKR 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 344 QHSILKDEVTYMNNLKLKLEMDAQHIKDEFfherEDLEFKINELLLAKEEQSYVVEKLKYEREDLNRQLcCTVEQHNKEI 423
Cdd:TIGR02169 400 EINELKRELDRLQEELQRLSEELADLNAAI----AGIEAKINELEEEKEDKALEIKKQEWKLEQLAADL-SKYEQELYDL 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 424 QRLQEHHQKEISELSETfMSGSEKEKLALMFEIQGLKEQCENLQHEKQEVVLNYESLREMMEILQTELGESAGK------ 497
Cdd:TIGR02169 475 KEEYDRVEKELSKLQRE-LAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEVAAGNrlnnvv 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 498 ------ISQEFETMKQQQAS-----DVHELQQKLR--TAFNEKDALLETINRLQGENE------KLLSQELVSELESTMK 558
Cdd:TIGR02169 554 veddavAKEAIELLKRRKAGratflPLNKMRDERRdlSILSEDGVIGFAVDLVEFDPKyepafkYVFGDTLVVEDIEAAR 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 559 NLKADNSMYlaslgqkdTLLQELEAKISSLAEEKDDFISKIKTSREEIDDLHQKWEREQKLSVE---LREAAEQAAQHNS 635
Cdd:TIGR02169 634 RLMGKYRMV--------TLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRElssLQSELRRIENRLD 705
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 636 ELRQRVSELTGKLDEILREKSQNDQnimvQMKTMTEDQEALSSKIKSLYEENNRLHSEKVQLSRDLEALQsqqdfaykEH 715
Cdd:TIGR02169 706 ELSQELSDASRKIGEIEKEIEQLEQ----EEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELE--------ED 773
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 716 VAEFEKKLQLMveERDDLNKLLENEQLQKSFVKTQLYEFLKQMRpsilEDNEEEDVVTVLKAVGESLvtvKEEKHNLVFE 795
Cdd:TIGR02169 774 LHKLEEALNDL--EARLSHSRIPEIQAELSKLEEEVSRIEARLR----EIEQKLNRLTLEKEYLEKE---IQELQEQRID 844
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 796 YDARVLELERRIKCLQ---EESVVQCEELRALVRDSEQEKILLRKELDEVTSTKEALQCDILEMKNTNEKTSLENQTLST 872
Cdd:TIGR02169 845 LKEQIKSIEKEIENLNgkkEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKA 924
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 873 RVEELSRSLhskNEVHNEKDLVIEHENLRLSLEQRESELQDVRAELMLLKDSLEKSPSVKNDQLSLVKELEEKIESLEKE 952
Cdd:TIGR02169 925 KLEALEEEL---SEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEE 1001
|
810
....*....|.
gi 1958757302 953 SKDKDEKISKI 963
Cdd:TIGR02169 1002 RKAILERIEEY 1012
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
588-1160 |
1.95e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 49.13 E-value: 1.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 588 LAEEKDDFISKIKTSREEIDDLHQKWEREQKLSVELREAAEQAAQHNSELRQRVSELTGKLDEI--LREKSQNDQNIMVQ 665
Cdd:PRK01156 122 LGISKDVFLNSIFVGQGEMDSLISGDPAQRKKILDEILEINSLERNYDKLKDVIDMLRAEISNIdyLEEKLKSSNLELEN 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 666 MKTMTEDQEALSS----KIKSLYEENNRLHSEKVQLSRDLEALQSQQDFA--YKEHVAEFEKKLQLMVEErddLNKLLEN 739
Cdd:PRK01156 202 IKKQIADDEKSHSitlkEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKnrYESEIKTAESDLSMELEK---NNYYKEL 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 740 EQLQKSFVKTQLYEFLKQMRPSILEDNEEEDVVTVLKAVgeslvtvkeekhnlvfeyDARVLELERRIKCLqeeSVVQCE 819
Cdd:PRK01156 279 EERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNI------------------DAEINKYHAIIKKL---SVLQKD 337
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 820 ELRALVRDSEQEKilLRKELDEVTSTKEALQCDILEMKNTNEKTSLENQTLSTRVEELSRSLhsKNEVHNEKDLVIEHEN 899
Cdd:PRK01156 338 YNDYIKKKSRYDD--LNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEIL--KIQEIDPDAIKKELNE 413
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 900 LRLSLEQRESELQDVRAELMLLKDSL-------------------------EKSPSVKNDQLSLVKELEEKIESLEKESK 954
Cdd:PRK01156 414 INVKLQDISSKVSSLNQRIRALRENLdelsrnmemlngqsvcpvcgttlgeEKSNHIINHYNEKKSRLEEKIREIEIEVK 493
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 955 DKDEKISKIKLVAVRAKK----ELDSNRKEAQTLRDELESVQSEKDRLSASMKEFIQGAESYKNLLLE-----------Y 1019
Cdd:PRK01156 494 DIDEKIVDLKKRKEYLESeeinKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLEdldskrtswlnA 573
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1020 DKQSEQLDVE--KERANNFEHHIEDLTKQLRDSTCQYEKLTSDNEDLLARIETlqaNARLLEAQILEVQRAKGVVEK--- 1094
Cdd:PRK01156 574 LAVISLIDIEtnRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIEN---EANNLNNKYNEIQENKILIEKlrg 650
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958757302 1095 ---ELEAEKLQKEQKIKEHVSTTNELEELQLQFQKEKKQLQKTMQEL----ELVKKDAQQTTLMNMEIADYER 1160
Cdd:PRK01156 651 kidNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRarleSTIEILRTRINELSDRINDINE 723
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1058-1280 |
2.15e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 2.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1058 TSDNEDLLARIETLQANARLLEAQILEVQRAKGVVEKELEAEKLQKEQKIKEHVSTTNELEELQLQFQKEKKQLQKTMQE 1137
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1138 LELVKKDAQQTTLMNMEIADYERLMKELNQK-LTNKNSKIEDLEQEMKIQKQKQETLQEEMTSLQSSVQHYEEKNAQIKQ 1216
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEdFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958757302 1217 LLVKTKKELADAKQAETDHLLLQASLKGELEASQQQVEVYKIQLAEMTSEKHKIHEHLKTSAEQ 1280
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
130-733 |
2.39e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.88 E-value: 2.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 130 REMESVKNELIAVHSE-HSKEKAALQRDLEGAVHRQAELLEQLKSQSDSEDNVKKLQEEIQNITAAFEeqtsclqkqlea 208
Cdd:PRK02224 180 RVLSDQRGSLDQLKAQiEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHE------------ 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 209 tsdEKQQEIIHLQKVIEDnaqhYQKDIntfqEEIVQLRATHKEEVNELMSQMETLAKEHEAAVNKlkenrvtlCETSETI 288
Cdd:PRK02224 248 ---ERREELETLEAEIED----LRETI----AETEREREELAEEVRDLRERLEELEEERDDLLAE--------AGLDDAD 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 289 PENYQCESESLNEDTSDASQENQKCSVALQEDPFAEHTVYDKVRQLEDSLKELESQHSILKDEVTymnNLKLKLEmDAQH 368
Cdd:PRK02224 309 AEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELE---EAREAVE-DRRE 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 369 IKDEFFHEREDLEFKINELLLAKEEQSYVVEKLKYEREDLNRQLCCTVEQHNKEIQRLQEhhQKEISELSETFMSGSEKE 448
Cdd:PRK02224 385 EIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEE--AEALLEAGKCPECGQPVE 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 449 KLALMFEIQGLKEQCENLQHEKQEVVLNYESLREMMEILqtelgESAGKISQEFETMKqQQASDVHELQQKLRTAFNEKD 528
Cdd:PRK02224 463 GSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERA-----EDLVEAEDRIERLE-ERREDLEELIAERRETIEEKR 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 529 allETINRLQGENEKLLSQELVSELESTMKNLKADNSmyLASLGQKDTLLQELEAKISSLAeekddfisKIKTSREEIDD 608
Cdd:PRK02224 537 ---ERAEELRERAAELEAEAEEKREAAAEAEEEAEEA--REEVAELNSKLAELKERIESLE--------RIRTLLAAIAD 603
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 609 LHQKWEREQKLSVELREAAEQAAQHNSELRQRVSELTGKLDEILREKSQNDQnimvqmKTMTEDQEALSSKIKSLYEENN 688
Cdd:PRK02224 604 AEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDK------ERAEEYLEQVEEKLDELREERD 677
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 1958757302 689 RLHSEKVQLSRDLEALQSQQDfaYKEHVAEFEKKLQLMVEERDDL 733
Cdd:PRK02224 678 DLQAEIGAVENELEELEELRE--RREALENRVEALEALYDEAEEL 720
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
72-651 |
3.10e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.39 E-value: 3.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 72 IKVLTERLDALLLEKAETEQQCLCLKKENIKMKQEVEDSVTKLEETQKEFEQSHRNYvremesvkNELIAVHSEHSKEKA 151
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE--------YELLAELARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 152 ALQRDLEGAVHRQAELLEQLKSQSDSEDNVKKLQEEIQNITAAFEEQTSCLQKQLEATSDEKQQEIIHLQKVIEDNAQHY 231
Cdd:COG1196 306 RLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELA 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 232 QKDINTFQEEIVQlrATHKEEVNELMSQMETLAKEHEAAVNKLKENRVTLCETSETIPENYQCESESLNEDTSDASQENQ 311
Cdd:COG1196 386 EELLEALRAAAEL--AAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLE 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 312 KCSVALQEDPFAEHTVYDKVRQLEDSLKELESQHSILKDEVTYMNNLKLKLEMDAQHIKDEFFHEREDLEFKINELLLAk 391
Cdd:COG1196 464 LLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEA- 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 392 eeqsyvveklkYEREDLNRQLCCTVEQHNKEIQRLQEHHQKEISELSETFMSGSEKEKLALMFEIQGLK---EQCENLQH 468
Cdd:COG1196 543 -----------ALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAvdlVASDLREA 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 469 EKQEVVLNYESLREMMEILQTELGESAGKISQEFETMKQQQASDVHELQQKLRTAFNEKDALLETINRLQGENEKLLSQE 548
Cdd:COG1196 612 DARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 549 LVSELEstmknlkadnsmylaSLGQKDTLLQELEAKISSLAEEKDDFISKIKTSREEIDDLHQKWEREQKLSVELREAAE 628
Cdd:COG1196 692 ELELEE---------------ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEEL 756
|
570 580
....*....|....*....|...
gi 1958757302 629 QAAQHNSELRQRVSELTGKLDEI 651
Cdd:COG1196 757 PEPPDLEELERELERLEREIEAL 779
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1115-1298 |
3.88e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 3.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1115 NELEELQLQFQKEKKQLQKTMQELELVKKDAQQTtlmNMEIADYERLMKELNQKLTNKNSKIEDLEQEMKIQKQKQETLQ 1194
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAAL---ERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1195 EEMTSL----------------------------QSSVQHYEEKNAQIKQLLVKTKKELADAKQAetdhlllQASLKGEL 1246
Cdd:COG4942 104 EELAELlralyrlgrqpplalllspedfldavrrLQYLKYLAPARREQAEELRADLAELAALRAE-------LEAERAEL 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1958757302 1247 EASQQQVEVYKIQLAEMTSEKHKIHEHLKTSAEQHQRTLSAYQQRVVALQEE 1298
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
650-1262 |
5.39e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.75 E-value: 5.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 650 EILREKSQNDQNIMVQMKTMTEDQEALSSKIKSLYEENNRLHSEKVQLSRDLEALQsqqdfAYKEHVAEFEKKLQLMVEE 729
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELE-----ELKEEIEELEKELESLEGS 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 730 RDDLNKLLENEQLQKSFVKTQLYEfLKQMRPSILEDNEEEDVVTVLKAVGESLVTVKEEKHNLVFEYDARVLELERRIKC 809
Cdd:PRK03918 254 KRKLEEKIRELEERIEELKKEIEE-LEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 810 LqeesvvqcEELRALVRDSEQEKILLRKELDEVTSTKEALQCDILEMKNTNE-KTSLENQTLSTRVEELSRSLHSKNEVH 888
Cdd:PRK03918 333 L--------EEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERlKKRLTGLTPEKLEKELEELEKAKEEIE 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 889 NEKDLVIEHENlrlSLEQRESELQDVRAELMLLKDS--LEKSPSVKNDQLSLVKELEEKIESLEKESKDKDEKISKIKLV 966
Cdd:PRK03918 405 EEISKITARIG---ELKKEIKELKKAIEELKKAKGKcpVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 967 AVRAKKELdSNRKEAQTLRDELESVQSEKDRLSASMKEfiqgaesyknlllEYDKQSEQLDVEKERANNFEHHIEDLTKQ 1046
Cdd:PRK03918 482 LRELEKVL-KKESELIKLKELAEQLKELEEKLKKYNLE-------------ELEKKAEEYEKLKEKLIKLKGEIKSLKKE 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1047 LRdstcqyekltsdnedllaRIETLQANARLLEAQILEVQRAKGVVEKELEAEKLQKEQKIKEHVSTTNELEELQLQFQK 1126
Cdd:PRK03918 548 LE------------------KLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKD 609
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1127 EKKQLQKTMQELELVKKDAQQTTLMNMEI-ADYERLMKELNQKLTNKNskiedlEQEMKIQKQKQETLQEEMTSLQSSVQ 1205
Cdd:PRK03918 610 AEKELEREEKELKKLEEELDKAFEELAETeKRLEELRKELEELEKKYS------EEEYEELREEYLELSRELAGLRAELE 683
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958757302 1206 HYEEKNAQIKQLLVKTKKELADAKQAETDHLLLQASLKgELEASQQQVEVYKIQLAE 1262
Cdd:PRK03918 684 ELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALE-RVEELREKVKKYKALLKE 739
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
1096-1291 |
5.40e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 47.74 E-value: 5.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1096 LEAEKLQKEQKIKEHVSTTNELEELQlqfqkekkQLQKTMQELELVKKDAQQTTLMNMEIADYERLMKELNQKLTNKNSK 1175
Cdd:PRK10929 23 PDEKQITQELEQAKAAKTPAQAEIVE--------ALQSALNWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1176 IEDLEQEMKIQKQKQETLQEEMTSLQSSVQHYEEKN---------AQIKQLLVKTKKELADAKQ------------AETD 1234
Cdd:PRK10929 95 PRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDrareisdslSQLPQQQTEARRQLNEIERrlqtlgtpntplAQAQ 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958757302 1235 HLLLQA------SLKGELEASQQQVEvYKIQLAEMTSEKH-KIHEHLKTSAEQHQRTLSAYQQR 1291
Cdd:PRK10929 175 LTALQAesaalkALVDELELAQLSAN-NRQELARLRSELAkKRSQQLDAYLQALRNQLNSQRQR 237
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
857-1232 |
6.21e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.32 E-value: 6.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 857 KNTNEKTSLENQTLSTRVEELSRSLHSKNEVHNEKDLVIEHENLRLS--LEQRESELQDVRAELMLLKDSLEKSPSVKND 934
Cdd:TIGR04523 133 KKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEkeKLNIQKNIDKIKNKLLKLELLLSNLKKKIQK 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 935 QLSLVK---ELEEKIESLEKESKDKDEKISKIKLVAVRAKKELDSNRKEAQTLRDELESVQSEKDRLSASMKEFIQGAES 1011
Cdd:TIGR04523 213 NKSLESqisELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQ 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1012 YKNLLLEYDKQSEQ--LDVEKERANNFEHHIEDLTKQLRDSTCQYEKLTSDNEDLLARIETLQANARLLEAQILEVQRAK 1089
Cdd:TIGR04523 293 LKSEISDLNNQKEQdwNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEI 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1090 GVVEKE----------LEAEKLQKEQKIKEHVSTTNELEELQLQFQKEKKQLQKTMQEL-ELVKKDAQQTTLMNMEIADY 1158
Cdd:TIGR04523 373 EKLKKEnqsykqeiknLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLkETIIKNNSEIKDLTNQDSVK 452
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958757302 1159 ERLMKELNQKLTNKNSKIEDLEQEMKIQKQKQETLQEEMTSLQSSVQHYEEKNAQIKQLLVKTKKELADAKQAE 1232
Cdd:TIGR04523 453 ELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKI 526
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
939-1149 |
7.36e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.75 E-value: 7.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 939 VKELEEKIESLEKESKDKDEKISKIKLVAVRAKKELDSNRKEAQTLRDELESVQSEKDRLSASMKEFIQ------GAESY 1012
Cdd:COG3883 25 LSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARalyrsgGSVSY 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1013 KNLLLEydkqseqldvekerANNFEHHIEDLTkqlrdstcQYEKLTSDNEDLLARIETLQANARLLEAQILEVQRAKGVV 1092
Cdd:COG3883 105 LDVLLG--------------SESFSDFLDRLS--------ALSKIADADADLLEELKADKAELEAKKAELEAKLAELEAL 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958757302 1093 EKELEAEKLQKEQKIKEHVSTTNELEELQLQFQKEKKQLQKTMQELELVKKDAQQTT 1149
Cdd:COG3883 163 KAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAA 219
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
72-410 |
1.05e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.97 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 72 IKVLTERLDALLLEKAETEQQCLCLKKENIKMKQEVEDSVTKLEETQKEFEQSHRNYVREMESVKNELIAVHSEhSKEKA 151
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL-SKELT 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 152 ALQRDLEGAVHRQAELLEQLKSQSDSEDNVKKLQEEIQNITAAFEEQTSCLQKQLEATSDEKQQEIIHLQKvIEDNAQHY 231
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES-LERRIAAT 836
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 232 QKDINTFQEEIVQLRAtHKEEVNELMSQMETLAKEHEAAVNKLKENRVTLCETSETIPENYQCESESLNEdtsdasqenq 311
Cdd:TIGR02168 837 ERRLEDLEEQIEELSE-DIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRE---------- 905
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 312 kcsvalqedpfaehtvydkvrqLEDSLKELESQHSILKDEVTYMNNLKLKLEMDAQHIKDEFFHERED-LEFKINELLLA 390
Cdd:TIGR02168 906 ----------------------LESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLtLEEAEALENKI 963
|
330 340
....*....|....*....|
gi 1958757302 391 KEEQSYVVEKLKYEREDLNR 410
Cdd:TIGR02168 964 EDDEEEARRRLKRLENKIKE 983
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
829-1300 |
1.10e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 1.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 829 EQEKILLRKELDEVTSTKEALQCDILEMKNTNEKTSLENQTLSTRVEELSRSLHSKNEVHNEKDlviehENLRLSLEQRE 908
Cdd:PTZ00121 1358 EAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKAD-----EAKKKAEEKKK 1432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 909 SELQDVRAELMLLKDSLEKSPSVKNDQLSLVKELEEKIESLE-KESKDKDEKISKIKLVAVRAKKELDSNRKEAQTLRDE 987
Cdd:PTZ00121 1433 ADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEaKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKA 1512
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 988 LESVQSEKDRLSASMKEfiqgAEsyknlllEYDKQSEQLDVEKERANNFEHHIEDLTKQLRDSTCQYEKLTSDNEDLLAR 1067
Cdd:PTZ00121 1513 DEAKKAEEAKKADEAKK----AE-------EAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALR 1581
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1068 IETLqanARLLEAQILEVQRAKGVVEKELEAEKLQKEQKIKEHVSTTNELEELQLQFQKEKKQLQKTMQELELVKKDAQQ 1147
Cdd:PTZ00121 1582 KAEE---AKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEE 1658
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1148 TTLMNmeiadyerlmKELNQKLTNKNSKIEDLEQEMKIQKQKQETLQEEmtslqssvQHYEEKNAQIKQLLVKTKKELAD 1227
Cdd:PTZ00121 1659 NKIKA----------AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKE--------AEEAKKAEELKKKEAEEKKKAEE 1720
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958757302 1228 AKQAETDHLLLQASLKGELEASQQQVEVYKIQLAEMTSEKHKIHEHLKTSAEQHQRTLSAYQQRVVALQEESR 1300
Cdd:PTZ00121 1721 LKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRR 1793
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
980-1282 |
1.14e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 46.59 E-value: 1.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 980 EAQTLRDELESVQSEKDRLSASMKEFIQGAESYknllLEYDKQSEqldvekERANNFEHHIED---LTKQLRDstcqyEK 1056
Cdd:PRK10929 24 DEKQITQELEQAKAAKTPAQAEIVEALQSALNW----LEERKGSL------ERAKQYQQVIDNfpkLSAELRQ-----QL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1057 LTSDNEDLLARI---------ETLQANARLLE----AQiLEVQRAKGVVE-------KELEAEKL--QKEQKIKEHVSTT 1114
Cdd:PRK10929 89 NNERDEPRSVPPnmstdaleqEILQVSSQLLEksrqAQ-QEQDRAREISDslsqlpqQQTEARRQlnEIERRLQTLGTPN 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1115 NELEELQL-QFQKEKKQLQKTMQELELvkkdAQQTTLMNMEIAdyeRLMKELNQKLTNK-NSKIEDLEQEMKIQKQKQET 1192
Cdd:PRK10929 168 TPLAQAQLtALQAESAALKALVDELEL----AQLSANNRQELA---RLRSELAKKRSQQlDAYLQALRNQLNSQRQREAE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1193 LQEEMTSLqssvqhYEEKNAQIKQLLV---KTKKELADAkqaetdhlLLQASLKGELEASQQQvevykiqlaEMTSEKHK 1269
Cdd:PRK10929 241 RALESTEL------LAEQSGDLPKSIVaqfKINRELSQA--------LNQQAQRMDLIASQQR---------QAASQTLQ 297
|
330
....*....|...
gi 1958757302 1270 IHEHLKTSAEQHQ 1282
Cdd:PRK10929 298 VRQALNTLREQSQ 310
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
826-1302 |
1.18e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.50 E-value: 1.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 826 RDSEQEKILLRKELDEVTSTKEALQCDILEMKNTNEKTSLENQTLSTrVEELSRSLHSKNEVHNEKDLVIEHENLRLSLE 905
Cdd:TIGR00618 249 REAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPL-AAHIKAVTQIEQQAQRIHTELQSKMRSRAKLL 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 906 QRESELQDVRAELMLLKDSLEKSPS------VKNDQLSLVKELEEKIESLEKESKDKDEKISKIKLVAVRAKKELDSNRK 979
Cdd:TIGR00618 328 MKRAAHVKQQSSIEEQRRLLQTLHSqeihirDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQR 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 980 EAQTLRDELESVQSEKDRLSASMKEFIQGAESYKNLLLEYDKQSEQLDVEKERANNFEHHIEDLTKQLRDSTCQYEKLTS 1059
Cdd:TIGR00618 408 EQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETR 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1060 DNEDLLARIETLQANARLLEAQILEVQrAKGVVEKELEAEKLQKEQKIKEHVSTTNELEELQLQFQKEKKQLQKTMQELE 1139
Cdd:TIGR00618 488 KKAVVLARLLELQEEPCPLCGSCIHPN-PARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQ 566
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1140 LVKKDAQQTTLMN---MEIADYERLMKELNQKLTNKNSKIEDleQEMKIQKQKQETLQEEMTSLQSSVQHYEEKNAQIKQ 1216
Cdd:TIGR00618 567 EIQQSFSILTQCDnrsKEDIPNLQNITVRLQDLTEKLSEAED--MLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALK 644
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1217 LLVKTKKELADAKQAETDHLLLQASLKGELEASQQ-----------QVEVYKIQLAEMTSEKHKIHEHLKTSAEQHQRTL 1285
Cdd:TIGR00618 645 LTALHALQLTLTQERVREHALSIRVLPKELLASRQlalqkmqsekeQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIE 724
|
490
....*....|....*..
gi 1958757302 1286 SAYQQRVVALQEESRTA 1302
Cdd:TIGR00618 725 NASSSLGSDLAAREDAL 741
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
944-1175 |
1.21e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 1.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 944 EKIESLEKESKDKDEKISKiklvavrAKKELDSNRKEAQTLRDELESVQSEKDRLSASMKEFIQGAESYKNLLLEYDKQS 1023
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAE-------LEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1024 EQLDVE-KERANNFEHHIEDLTKQLRDSTCQYEKLTSDNEDLLARIETLQANARLLEAQILEVQRAKgvveKELEAEKLQ 1102
Cdd:COG4942 93 AELRAElEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADL----AELAALRAE 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958757302 1103 KEQKIKEHVSTTNELEELQLQFQKEKKQLQKTMQELEL-VKKDAQQTTLMNMEIADYERLMKELNQKLTNKNSK 1175
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAERQKLLARLEKeLAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
390-1194 |
1.65e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.26 E-value: 1.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 390 AKEEQSYVVEKLKYEREDLNRQLCCTVEQHNKEIQRLQEHHQKEISELSETFMsgsekEKLALMFEIQGLKEQCENLQHE 469
Cdd:pfam15921 72 GKEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQM-----ERDAMADIRRRESQSQEDLRNQ 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 470 KQEVVLNYESLREMMEILqteLGESAGKISQEFETMKQQQA--SDVHELQQKLRTAFNEKDALLETINRLQGENEKLLSQ 547
Cdd:pfam15921 147 LQNTVHELEAAKCLKEDM---LEDSNTQIEQLRKMMLSHEGvlQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAIS 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 548 ELVSELESTMKNLKAdnsMYLASLGQKDTLLQELEAKISSLAEEKDDFISKIKTSRE-EIDDLHQKWE--REQKLSV--E 622
Cdd:pfam15921 224 KILRELDTEISYLKG---RIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEvEITGLTEKASsaRSQANSIqsQ 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 623 LREAAEQAAQHNSELRQRVSELTGKLDEILREksqndqniMVQMKTMTEDQ-EALSSKIKSLYEENNRLHSEKVQLSRDL 701
Cdd:pfam15921 301 LEIIQEQARNQNSMYMRQLSDLESTVSQLRSE--------LREAKRMYEDKiEELEKQLVLANSELTEARTERDQFSQES 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 702 EALQSQqdfaYKEHVAEFEKKLQLMVEERDDlNKLLENEQLQKSFVktqlyefLKQMRPSILEDNEEedvVTVLKAVges 781
Cdd:pfam15921 373 GNLDDQ----LQKLLADLHKREKELSLEKEQ-NKRLWDRDTGNSIT-------IDHLRRELDDRNME---VQRLEAL--- 434
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 782 LVTVKEEKHNlvfeydarvlELERRIKCLQEESvVQCEELRALVRDSEQEKILLRKELDEVTSTKEALQ----------C 851
Cdd:pfam15921 435 LKAMKSECQG----------QMERQMAAIQGKN-ESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLEssertvsdltA 503
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 852 DILEMKNTNEKTSLENQTLSTRVE-ELSRSLHSKNEVHNEKDLVIEHENLRLSLEQRESELQDVRAEL----MLLKDSLE 926
Cdd:pfam15921 504 SLQEKERAIEATNAEITKLRSRVDlKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIenmtQLVGQHGR 583
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 927 KSPSVKNDQLSLVKELEEKIESLEKESKDKDEKISKIklvavrakKELDSNRKEAQTLRDELESVQSEKDRLSASMK-EF 1005
Cdd:pfam15921 584 TAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKI--------RELEARVSDLELEKVKLVNAGSERLRAVKDIKqER 655
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1006 IQGAESYKNLLLEYDKQSEQLDVEKERANNFEHHIEDLTKQLRdstCQYEKLTSDNEDLLARIETLQANARllEAQILEV 1085
Cdd:pfam15921 656 DQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLK---MQLKSAQSELEQTRNTLKSMEGSDG--HAMKVAM 730
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1086 QRAKGVVEKELEAEKLQKEQKIKEHVSTTNELEElqlQFQKEKKqlQKTMQELELVKKDAQQTTLMNMEIADYERLMKE- 1164
Cdd:pfam15921 731 GMQKQITAKRGQIDALQSKIQFLEEAMTNANKEK---HFLKEEK--NKLSQELSTVATEKNKMAGELEVLRSQERRLKEk 805
|
810 820 830
....*....|....*....|....*....|.
gi 1958757302 1165 -LNQKLTNKNSKIEDLEQEMKIQKQKQETLQ 1194
Cdd:pfam15921 806 vANMEVALDKASLQFAECQDIIQRQEQESVR 836
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
855-1281 |
1.80e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.78 E-value: 1.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 855 EMKNTNEKTSLENQTLSTRVEELSRS-LHSKNEVHNEKDLVIEHENLRLSLEQRESELQDVRAELMLLKDSLEKSPSVKN 933
Cdd:TIGR04523 83 QIKDLNDKLKKNKDKINKLNSDLSKInSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYN 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 934 DQLSLVKELEEKIESLEKESKDKDEKISKIKLVAVRAKKEL---DSNRKEAQTLRDELESVQSEKDRLSASMKEFIQGAE 1010
Cdd:TIGR04523 163 DLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLsnlKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEIN 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1011 SYKNLLLEYDKQSEQLDVEKERANNfehhiedltkQLRDSTCQYEKLTSDNEDLLARIETLQANARLLEAQilevqrAKG 1090
Cdd:TIGR04523 243 EKTTEISNTQTQLNQLKDEQNKIKK----------QLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQ------KEQ 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1091 VVEKELEAEKLQKEQKIKEHVSTTNELEELQLQFQKEKKQLQKTMQELELVKKDAQ-QTTLMNMEIADYERLMKELNQKL 1169
Cdd:TIGR04523 307 DWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQrELEEKQNEIEKLKKENQSYKQEI 386
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1170 TNKNSKIEDLEQEMKIQKQKQETLQEEMTSLQSSVQHYEEKNAQIKQLLVKTKKELADAKQAETDHLLLQASLKGELEAS 1249
Cdd:TIGR04523 387 KNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESL 466
|
410 420 430
....*....|....*....|....*....|..
gi 1958757302 1250 QQQVEVYKIQLAEMTSEKHKIHEHLKTSAEQH 1281
Cdd:TIGR04523 467 ETQLKVLSRSINKIKQNLEQKQKELKSKEKEL 498
|
|
| CC149 |
pfam09789 |
Coiled-coil domain-containing protein 149-A; Members of this family have been annotated as ... |
971-1207 |
2.03e-04 |
|
Coiled-coil domain-containing protein 149-A; Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Pssm-ID: 462902 [Multi-domain] Cd Length: 314 Bit Score: 45.01 E-value: 2.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 971 KKELDSNRKEAQTLRDELESVQSEKDRLSASmkefiqgAESYKNLLLEYDKQSEQLDVEKERANNFEHHIEDLTKQLRDS 1050
Cdd:pfam09789 1 KRKLQSKVEALLILSKELEKCRQERDQYKLM-------AEQLQERYQGLKKQLRELKAGNNDFKPDDREQVNLIQLLRDS 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1051 TCQYEKLTSDNEDLLARIETLQANARLLEAQIlEVQRAKGVVEKELEAEKLQKEQKikehVSTTNELEELQLQFQKEKKQ 1130
Cdd:pfam09789 74 REQNKCLRLEVEELRQKLNEAQGDIKLLREQI-ARQRLGGPDEGSISTRHFPLHER----EELVKQLEKLRKKCQQLERD 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1131 LQKTMQELE--LVKKDAQQTTlmnmeiadYERLMKELNQKLTNKNSKIEDLEQ---EMKIQKQKQETLQEEMTSLQSSVQ 1205
Cdd:pfam09789 149 LQSVLDEKEelETERDAYKCK--------AHRLNHELNYILGGDESRIVDIDAlimENRYLQERLKQLEEEKELAKQTLS 220
|
..
gi 1958757302 1206 HY 1207
Cdd:pfam09789 221 KY 222
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
969-1231 |
2.43e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 2.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 969 RAKKELDSNRKEAQTLRDELESVQSEKDRLSASMKEFiqgaesyknllleydkqseqldvekerannfEHHIEDLTKQLR 1048
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL-------------------------------ERRIAALARRIR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1049 DSTCQYEKLTSDNEDLLARIETLQANARLLEAQILEVQRAKGVVEKELEAEKLQKEQKIKEHVSTTNELEELQLQFQKEK 1128
Cdd:COG4942 73 ALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1129 KQLQKTMQELELVKKDAQQTTlmnmeiadyerlmKELNQKLTNKNSKIEDLEQEMKIQKQKQETLQEEMTSLQSSVQHYE 1208
Cdd:COG4942 153 EELRADLAELAALRAELEAER-------------AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQ 219
|
250 260
....*....|....*....|...
gi 1958757302 1209 EKNAQIKQLLVKTKKELADAKQA 1231
Cdd:COG4942 220 QEAEELEALIARLEAEAAAAAER 242
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
829-1277 |
2.44e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.40 E-value: 2.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 829 EQEKILLRKELDEVTSTKEALQCDILEMKNTNEKTSLENQTLSTRVEELSRSLHSKNEVHNEKDLVIEHENLRLSleQRE 908
Cdd:TIGR04523 210 IQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIK--ELE 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 909 SELQDVRAELMLLKDslEKSPSVKNDQLSLVKELEEKIESLEKESKDKDEKISKIKLVAVRAKKELDSNRKEAQTLR--- 985
Cdd:TIGR04523 288 KQLNQLKSEISDLNN--QKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQrel 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 986 ----DELESVQSEKDRLSASMKEFIQGAESYKNLLLEYDKQSEQLDVE----KERANNFEHHIEDLTKQLRDSTCQYEKL 1057
Cdd:TIGR04523 366 eekqNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQikklQQEKELLEKEIERLKETIIKNNSEIKDL 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1058 TSDNEDLLARIETLQANARLLEAQILEVQRAKGVVEKELEAEKLQKEQKIKEHVSTTNE---LEELQLQFQKEKKQLQKT 1134
Cdd:TIGR04523 446 TNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEkkeLEEKVKDLTKKISSLKEK 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1135 MQELELVK--KDAQQTTLMNMEIADYERLMKELNQK-LTNKNSKIEDLEQEMKIQKQKQETLQEEMTSLQSSVQHYEEKN 1211
Cdd:TIGR04523 526 IEKLESEKkeKESKISDLEDELNKDDFELKKENLEKeIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEI 605
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958757302 1212 AQIKQLLVKTKKELADAKQAETDHLLLQASLKGELEASQQQVEVYKIQLAEMTSEKHKIHEHLKTS 1277
Cdd:TIGR04523 606 EEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKES 671
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
573-1127 |
2.74e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 2.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 573 QKDTL--LQELEAKISSLAEEKDDFiskiktsrEEIDDLHQKWEREQKLS------VELREAAEQAAQHNSELRQRVSEL 644
Cdd:COG4913 250 QIELLepIRELAERYAAARERLAEL--------EYLRAALRLWFAQRRLElleaelEELRAELARLEAELERLEARLDAL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 645 TGKLDEILREKSQND----QNIMVQMKTMTEDQEALSSKIKSLYEENNRLHSEKVQLSRDLEALQSQ----------QDF 710
Cdd:COG4913 322 REELDELEAQIRGNGgdrlEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEaaallealeeELE 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 711 AYKEHVAEFEKKLQLMVEERDDLNKLLENEQLQKSFVKTQLYEFLKQMRPSILEDNEEedvvtvLKAVGEsLVTVKEEK- 789
Cdd:COG4913 402 ALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEALGLDEAE------LPFVGE-LIEVRPEEe 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 790 ----------HNLVF------EYDARVLE------LERRIKCLQEESVVQCEELRALVRDSEQEKIL-----LRKELDEV 842
Cdd:COG4913 475 rwrgaiervlGGFALtllvppEHYAAALRwvnrlhLRGRLVYERVRTGLPDPERPRLDPDSLAGKLDfkphpFRAWLEAE 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 843 TSTKEALQC--DILEMKNTNEKTSLENQTLStrveelSRSLHSKN-EVHNEKDLVIEHENLRLsLEQRESELQDVRAELm 919
Cdd:COG4913 555 LGRRFDYVCvdSPEELRRHPRAITRAGQVKG------NGTRHEKDdRRRIRSRYVLGFDNRAK-LAALEAELAELEEEL- 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 920 llkdslekspsvkndqlslvKELEEKIESLEKESKDKDEKISKIKLVAvrakkELDSNRKEAQTLRDELESVQSEKDRLS 999
Cdd:COG4913 627 --------------------AEAEERLEALEAELDALQERREALQRLA-----EYSWDEIDVASAEREIAELEAELERLD 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1000 ASMKEFIQGAESYKNLLLEYDKQSEQLDVEKERANNFEHHIEDLTKQLRdstcQYEKLTSDNEDLLARIETLQANARLLE 1079
Cdd:COG4913 682 ASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELD----ELQDRLEAAEDLARLELRALLEERFAA 757
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 1958757302 1080 AQILEVQRAkgvVEKELEAEKLQKEQKIKEHvstTNELEELQLQFQKE 1127
Cdd:COG4913 758 ALGDAVERE---LRENLEERIDALRARLNRA---EEELERAMRAFNRE 799
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
941-1110 |
2.92e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.76 E-value: 2.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 941 ELEEKIESLEKESKDKDEKISKIKLVAVRAKKELDSNRKEAQTLRDELESVQSEKDRLSASMKEfIQGAESYKNLLLEYD 1020
Cdd:COG1579 21 RLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGN-VRNNKEYEALQKEIE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1021 KQSEQLDVEKERANNFEHHIEDLTKQLRDSTCQYEKLTSDNEDLLARIETLQANarlLEAQILEVQRAKGVVEKELEAEK 1100
Cdd:COG1579 100 SLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAE---LEAELEELEAEREELAAKIPPEL 176
|
170
....*....|
gi 1958757302 1101 LQKEQKIKEH 1110
Cdd:COG1579 177 LALYERIRKR 186
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1001-1228 |
4.08e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 4.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1001 SMKEFIQGAESYKNLLLEYDKQSEQLDVEKERANNFEHHIEDLTK-QLRDSTCQYEKLTSDNEDLLARIETLQANARLLE 1079
Cdd:COG4913 229 ALVEHFDDLERAHEALEDAREQIELLEPIRELAERYAAARERLAElEYLRAALRLWFAQRRLELLEAELEELRAELARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1080 AQILEVQRAKGVVEKELEAEKLQKEQkikehvSTTNELEELQLQFQKEKKQLQKTMQELELVKKDAQQTTL-MNMEIADY 1158
Cdd:COG4913 309 AELERLEARLDALREELDELEAQIRG------NGGDRLEQLEREIERLERELEERERRRARLEALLAALGLpLPASAEEF 382
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1159 ERLMKELNQKLTNKNSKIEDLEQEMKIQKQKQETLQEEMTSLQSSVQHYEEKNAQIKQLLVKTKKELADA 1228
Cdd:COG4913 383 AALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEA 452
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
966-1147 |
4.47e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.05 E-value: 4.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 966 VAVRAKKELDSNRKEAQTLRDELESVQSEKDRLSASMKEFIQGAESYKNLLLEYDKQSEQLDVEKERAN-NFEHHIEDLT 1044
Cdd:COG3883 10 TPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEaEIEERREELG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1045 KQLRDstcQYEK----------LTSDN-EDLLARIETLQANARLLEAQILEVQRAKgvveKELEAEKLQKEQKIKEHVST 1113
Cdd:COG3883 90 ERARA---LYRSggsvsyldvlLGSESfSDFLDRLSALSKIADADADLLEELKADK----AELEAKKAELEAKLAELEAL 162
|
170 180 190
....*....|....*....|....*....|....
gi 1958757302 1114 TNELEELQLQFQKEKKQLQKTMQELELVKKDAQQ 1147
Cdd:COG3883 163 KAELEAAKAELEAQQAEQEALLAQLSAEEAAAEA 196
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
97-743 |
5.22e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.72 E-value: 5.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 97 KKENIKMKQEVEDSVTKLEETQKEFEQS---HRNYVREMESVKNELiaVHSEHSKEKA-ALQRDLEGAVHRQaelLEQLK 172
Cdd:pfam15921 102 EKQKFYLRQSVIDLQTKLQEMQMERDAMadiRRRESQSQEDLRNQL--QNTVHELEAAkCLKEDMLEDSNTQ---IEQLR 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 173 SQSDSEDNVkklQEEIQNITAAFEEQTSCLQKQLEATSD----EKQQEIIHLQKVIEDNAQHYQKDINTFQEEIVQLRAT 248
Cdd:pfam15921 177 KMMLSHEGV---LQEIRSILVDFEEASGKKIYEHDSMSTmhfrSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSE 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 249 HKEEVNELMSQ----METLAKEHEAAVNKLKENRVTLCETSETIPENYQC-ESESLNEDTSDASQENQKCSVALQedpfA 323
Cdd:pfam15921 254 SQNKIELLLQQhqdrIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIiQEQARNQNSMYMRQLSDLESTVSQ----L 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 324 EHTVYDKVRQLEDSLKELESQHSILKDEVTYMNNLKLKLEMDAQHIKDEFFHEREDLEFKINELLLAKEE---------- 393
Cdd:pfam15921 330 RSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQnkrlwdrdtg 409
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 394 QSYVVEKLKYEREDLN---RQLCCTVEQHNKEIQRLQEHHQKEISELSETFMSGSekeklALMFEIQGLKEQCENLQHEK 470
Cdd:pfam15921 410 NSITIDHLRRELDDRNmevQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVS-----SLTAQLESTKEMLRKVVEEL 484
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 471 QEVVLNYESLREMMEILQTELGESAGKI---SQEFETMKQQQASDVHELQ------QKLRTAFNEKDAL----------- 530
Cdd:pfam15921 485 TAKKMTLESSERTVSDLTASLQEKERAIeatNAEITKLRSRVDLKLQELQhlknegDHLRNVQTECEALklqmaekdkvi 564
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 531 ------LETINRLQGENEKLLSQELV--SELESTMKNLKADNSMYLASLGQKDTLLQELEAKISSL-------------- 588
Cdd:pfam15921 565 eilrqqIENMTQLVGQHGRTAGAMQVekAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLelekvklvnagser 644
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 589 -------AEEKDDFISKIKTSREEIDDLHQKWE---------------REQKLSVELREAAEQAAQHNSELR-------Q 639
Cdd:pfam15921 645 lravkdiKQERDQLLNEVKTSRNELNSLSEDYEvlkrnfrnkseemetTTNKLKMQLKSAQSELEQTRNTLKsmegsdgH 724
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 640 RVSELTGKLDEILREKSQND------QNIMVQMKTMTEDQEALSSKIKSLYEENNRLHSEKVQLSRDLEALQSQQDfAYK 713
Cdd:pfam15921 725 AMKVAMGMQKQITAKRGQIDalqskiQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQER-RLK 803
|
730 740 750
....*....|....*....|....*....|...
gi 1958757302 714 EHVAEFE---KKLQLMVEERDDLNKLLENEQLQ 743
Cdd:pfam15921 804 EKVANMEvalDKASLQFAECQDIIQRQEQESVR 836
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
925-1223 |
5.50e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.28 E-value: 5.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 925 LEKSPSVKNDQLSLVKELEEKIESLEKESKDKDEKISKIKlvavRAKKELDSNRKEAQTLRDELESVQSEKDRLSASMKE 1004
Cdd:PRK03918 157 LDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIK----EKEKELEEVLREINEISSELPELREELEKLEKEVKE 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1005 FIQGAESYKNLLLEYDKQSEQLDVEKERANNFEHHIEDLTKQLRDStcqyekltsdnEDLLARIETLQANARLLEAqILE 1084
Cdd:PRK03918 233 LEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEEL-----------EEKVKELKELKEKAEEYIK-LSE 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1085 VQRAKGVVEKELEAEKLQKEQKIKEHVSTTNELEELQLQFQKEKKQLQKTMQELELVKKDAQQTTLMNMEIADYERLMKE 1164
Cdd:PRK03918 301 FYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKR 380
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1958757302 1165 LnqkltnKNSKIEDLEQEMKIQKQKQETLQEEMTSLQSSVQHYEEKNAQIKQLLVKTKK 1223
Cdd:PRK03918 381 L------TGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKK 433
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1057-1195 |
7.27e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 44.05 E-value: 7.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1057 LTSDNEDLLARIETLQANARLLEAQILEVQrakgvvEKELEAEKLQKEQKikehvsttNELEELQLQFQKEKKQLQKTMQ 1136
Cdd:PRK00409 511 IGEDKEKLNELIASLEELERELEQKAEEAE------ALLKEAEKLKEELE--------EKKEKLQEEEDKLLEEAEKEAQ 576
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958757302 1137 E-LELVKKDAQQT--TLMNMEIADYERL-MKELNQKLTNKNSKIEDLEQEMKIQKQKQETLQE 1195
Cdd:PRK00409 577 QaIKEAKKEADEIikELRQLQKGGYASVkAHELIEARKRLNKANEKKEKKKKKQKEKQEELKV 639
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
42-275 |
8.01e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.77 E-value: 8.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 42 LQKAKARCTELDKEVEELKSKpvdggtddmIKVLTERLDALLLEKAETEQQCLCLKKENIKMKQEVEDSVTKLEETQKEF 121
Cdd:COG1196 283 LEEAQAEEYELLAELARLEQD---------IARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEEL 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 122 EQShrnyvremESVKNELIAVHSEHSKEKAALQRDLEGAVHRQAELLEQLKSQSDSEDNVKKLQEEIQNITAAFEEQTSC 201
Cdd:COG1196 354 EEA--------EAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEE 425
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958757302 202 LQKQLEATSDEKQQEIIHLQKVIEDNAQHYQKdintfQEEIVQLRATHKEEVNELMSQMETLAKEHEAAVNKLK 275
Cdd:COG1196 426 LEEALAELEEEEEEEEEALEEAAEEEAELEEE-----EEALLELLAELLEEAALLEAALAELLEELAEAAARLL 494
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
113-964 |
1.14e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.42 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 113 KLEETQKEFEQSHRNYVREMESVKNELIAVHSEHSKEKAALQRDLEGAVHRQAELLEQLKSQSDSEDNVKKLQEEIQNIT 192
Cdd:pfam02463 170 KKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDE 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 193 AAFEEQTSCLQKQLEATSDEKQQEIIHLQKVIEDnaQHYQKDINTFQEEIVQLRATHKEEVNELMSQMETLAKEHEAAVN 272
Cdd:pfam02463 250 QEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKL--QEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 273 KLKENRVTLCETSETIPENYQCESESLNEDTSDASQENQKCSVALQEDPFAEHTVYDKVRQLEDSLKELESQHSILKDEV 352
Cdd:pfam02463 328 KELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEA 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 353 TYMNNLKLKLEMDAQHIKDEFFHEREDLEFKINELLLAKEEQSYVVEKLKYEREDLNRQLcctveqHNKEIQRLQEHHQK 432
Cdd:pfam02463 408 QLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELEL------KKSEDLLKETQLVK 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 433 EISELSETFMSGSEKEKLALMFEIQGLKEQCENLQHEKQEVVLNYESLREMMEILQTELGESAGKISQEFETMKqqqASD 512
Cdd:pfam02463 482 LQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSA---TAD 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 513 VHELQQKLRTAFNEKDALLETINRLQGENEKLLSQELVSELESTMKNLKADNSMYLASLGQKDTLLQELEAKISSLAEEK 592
Cdd:pfam02463 559 EVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLK 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 593 DDFISKIKTSREEIDDLHQKWEREQKLSVELREAAEQAAQHNSELRQRVSELTGKLDEILREKSQNDQNIMVQMKTMTED 672
Cdd:pfam02463 639 ESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLE 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 673 QEALSSKIKSLYEENNRLHSEKVQLSRD---LEALQSQQDFAYKEHVAEFEKKLQLMVEERDDLNKLLENEQLQKSFVKT 749
Cdd:pfam02463 719 AEELLADRVQEAQDKINEELKLLKQKIDeeeEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKA 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 750 QLYEFLKQMRPSILEDNEEEDVVTVLKAVGESLVTVKEEKHNLVFEYDARVLELERRIKCLQEESVVQCEELRALVRDSE 829
Cdd:pfam02463 799 QEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEE 878
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 830 QEKILLR-----KELDEVTSTKEALQCDILEMKNTNEKTSLENQTLSTRVEELSRSLHSKNEVHNEKDLVIEHENLRLSL 904
Cdd:pfam02463 879 LEEQKLKdelesKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEE 958
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 905 EQRESELQDVRAELMLLKDSLEKSPSVKNDQlslVKELEEKIESLEKESKDKDEKISKIK 964
Cdd:pfam02463 959 EERNKRLLLAKEELGKVNLMAIEEFEEKEER---YNKDELEKERLEEEKKKLIRAIIEET 1015
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
507-740 |
1.26e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 507 QQQASDVHELQQKLRTAFNEKDALLETINRLQGENEKLLS----QELVSELESTMKNLKADNSMylaslgqkdtlLQELE 582
Cdd:COG4913 623 EEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDvasaEREIAELEAELERLDASSDD-----------LAALE 691
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 583 AKISSLAEEKDDFISKIKTSREEIDDLHQKWEREQKLSVELREAAEQAAQHNSElrQRVSELTGKLDEILREKSQNDqni 662
Cdd:COG4913 692 EQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARL--ELRALLEERFAAALGDAVERE--- 766
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 663 mvQMKTMTEDQEALSSKIKSLYEE--------NNRLHSEKVQLSRDLEA-------LQSQQDFAYKEHVAEFEKKL-QLM 726
Cdd:COG4913 767 --LRENLEERIDALRARLNRAEEEleramrafNREWPAETADLDADLESlpeylalLDRLEEDGLPEYEERFKELLnENS 844
|
250
....*....|....
gi 1958757302 727 VEERDDLNKLLENE 740
Cdd:COG4913 845 IEFVADLLSKLRRA 858
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
915-1283 |
1.56e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 915 RAELMLLKDSLEKSPSVKN-DQLSLVKELEEKIESLEKESKDKDEKISKIKLVAVRAKKELDSNRKEAQTLRDELESVQS 993
Cdd:PTZ00121 1285 KAEEKKKADEAKKAEEKKKaDEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE 1364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 994 EKDRLSASMKEFIQGAESYKNLLLEYDKQSEQldveKERANNFEHHIEDLTKQLRDSTCQYEKLTSDNE----DLLARIE 1069
Cdd:PTZ00121 1365 KAEAAEKKKEEAKKKADAAKKKAEEKKKADEA----KKKAEEDKKKADELKKAAAAKKKADEAKKKAEEkkkaDEAKKKA 1440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1070 TLQANARLLEAQILEVQRAKGVVEKELEAEKLQKEQKIKEHVSTTNELEELQLQFQKEKKQLQKTMQElelvKKDAQQTT 1149
Cdd:PTZ00121 1441 EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEA----KKKADEAK 1516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1150 LMNmEIADYERLMKELNQKLTNKNSKIEDLEQEMKIQKQKQETLQEEMTSLQSSVQHYEEKNAQIKQllVKTKKELADAK 1229
Cdd:PTZ00121 1517 KAE-EAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRK--AEEAKKAEEAR 1593
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 1958757302 1230 QAETDHLLLQASLKGELEASQQQVEVYKIQLAEMTSEKHKIHEHLKTSAEQHQR 1283
Cdd:PTZ00121 1594 IEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKK 1647
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
330-736 |
1.61e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.74 E-value: 1.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 330 KVRQLEDSLKELESQHSILKDEVTYMNNLKLKLEMDAQHIKDEFFHEREDLEFKINELLLAKEEQSYVVEKLKYEREDLN 409
Cdd:PRK03918 339 RLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELK 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 410 RQlcctVEQHNKEIQRLQ--------------EHHQKEISELSETFMSGSEKEKLALMFEIQGLKEQCENLQHE--KQEV 473
Cdd:PRK03918 419 KE----IKELKKAIEELKkakgkcpvcgreltEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVlkKESE 494
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 474 VLNYESLREMMEILQTELG----ESAGKISQEFEtmkqqqasdvhELQQKLRTAFNEKDALLETINRLQG-ENEKLLSQE 548
Cdd:PRK03918 495 LIKLKELAEQLKELEEKLKkynlEELEKKAEEYE-----------KLKEKLIKLKGEIKSLKKELEKLEElKKKLAELEK 563
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 549 LVSELESTMKNLKADnsmyLASLGQKDtlLQELEAKISSLAEEKDDFISkIKTSREEIddlhqkwEREQKLSVELREAAE 628
Cdd:PRK03918 564 KLDELEEELAELLKE----LEELGFES--VEELEERLKELEPFYNEYLE-LKDAEKEL-------EREEKELKKLEEELD 629
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 629 QAAQHNSELRQRVSELTGKLDEILREKSQNDQnimvqmKTMTEDQEALSSKIKSLYEENNRLHSEKVQLSRDLEALQSQQ 708
Cdd:PRK03918 630 KAFEELAETEKRLEELRKELEELEKKYSEEEY------EELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEEL 703
|
410 420 430
....*....|....*....|....*....|
gi 1958757302 709 DF--AYKEHVAEFEKKLQLMVEERDDLNKL 736
Cdd:PRK03918 704 EEreKAKKELEKLEKALERVEELREKVKKY 733
|
|
| Nup88 |
pfam10168 |
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal ... |
789-964 |
1.62e-03 |
|
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein has no obvious structural motifs but is the region for binding to Nup98, one of the components of the nuclear pore. the C-terminal end is a predicted coiled-coil domain. Nup88 is overexpressed in tumour cells.
Pssm-ID: 462975 [Multi-domain] Cd Length: 713 Bit Score: 42.72 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 789 KHNLVFEydarvlELERRIKCLQEESVVQCEELRalvrdseqekiLLRKELDEVTSTKEALQCDILEMKNTNEKtslenq 868
Cdd:pfam10168 551 KHDLARE------EIQKRVKLLKLQKEQQLQELQ-----------SLEEERKSLSERAEKLAEKYEEIKDKQEK------ 607
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 869 tLSTRVEELSRSLHSK--NEVHNEKDLVIEHENLRLSLEQRESELQDVRAELMLLKDSLEKSPS-VKNDQLSLVKELEEK 945
Cdd:pfam10168 608 -LMRRCKKVLQRLNSQlpVLSDAEREMKKELETINEQLKHLANAIKQAKKKMNYQRYQIAKSQSiRKKSSLSLSEKQRKT 686
|
170 180
....*....|....*....|
gi 1958757302 946 I-ESLEKESKDKDEKISKIK 964
Cdd:pfam10168 687 IkEILKQLGSEIDELIKQVK 706
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
590-1168 |
1.63e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.72 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 590 EEKDDFISKIKTSREEIDDLHQKWEREQKLSVELREAAEQAAQHNSELRQRVSELTGKLDEILREKSQNDQnimvqmktm 669
Cdd:PRK02224 237 DEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDA--------- 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 670 teDQEALSSKIKSLYEENNRLHSEKVQLSRDLEALQSQQDfAYKEHVAEFEKKLQLMVEERDDLNKLLENEQLQKSFVKT 749
Cdd:PRK02224 308 --DAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAE-SLREDADDLEERAEELREEAAELESELEEAREAVEDRRE 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 750 QLYEFLKQMrpsilEDNEE--EDVVTVLKAVGESLVTVKEEKHNLVfeydARVLELERRIKCLqEESVVQCEELRALVRD 827
Cdd:PRK02224 385 EIEELEEEI-----EELRErfGDAPVDLGNAEDFLEELREERDELR----EREAELEATLRTA-RERVEEAEALLEAGKC 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 828 SEQEKILLRKELDEVTSTKEAlqcdilemkntnektslenqtlstRVEELSRSLHSKNEVHNEKDLVIEhenlrlsleqR 907
Cdd:PRK02224 455 PECGQPVEGSPHVETIEEDRE------------------------RVEELEAELEDLEEEVEEVEERLE----------R 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 908 ESELQDVRAELMLLKDSLEKSPSVKNDQLSLVKELEEKIESLEKESKDKDEKISKIKLVAVRAKKELDSNRKEAQTLRDE 987
Cdd:PRK02224 501 AEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSK 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 988 LESVQSEKDRLsasmkefiqgaESYKNLLLEYDKQSEQLDVEKERANNFEHHIEDLTKQLRDSTCQYEKLTSDNEDllAR 1067
Cdd:PRK02224 581 LAELKERIESL-----------ERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDE--AR 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1068 IETLQANARLLEAQILEvqrakgvVEKELEAEKLQKEQKIKEHVSTTNELEELQlQFQKEKKQLQKTMQELELVKKDAqq 1147
Cdd:PRK02224 648 IEEAREDKERAEEYLEQ-------VEEKLDELREERDDLQAEIGAVENELEELE-ELRERREALENRVEALEALYDEA-- 717
|
570 580
....*....|....*....|.
gi 1958757302 1148 TTLMNMeiadYERLMKELNQK 1168
Cdd:PRK02224 718 EELESM----YGDLRAELRQR 734
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
487-1224 |
1.66e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.80 E-value: 1.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 487 LQTELGESagkiSQEFETMKQQQASDVHELQQKLRTAFNEKDALLETINRLQGENEKLLSQelvseLESTMKNLKADNSM 566
Cdd:pfam15921 90 LQRRLNES----NELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQ-----LQNTVHELEAAKCL 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 567 YLASLGQKDTLLQELEAKISSlaeeKDDFISKIKTSREEIDDLHQK--WEREQKLSVELREAAEQAAQHNSELRQRVSEL 644
Cdd:pfam15921 161 KEDMLEDSNTQIEQLRKMMLS----HEGVLQEIRSILVDFEEASGKkiYEHDSMSTMHFRSLGSAISKILRELDTEISYL 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 645 TGKLD------EILREKSQNDQNIMVQMKTMTEDQ--EALSSKIKSLYEENNRLHSEKVQLSRDLEALQSQ---QDFAYK 713
Cdd:pfam15921 237 KGRIFpvedqlEALKSESQNKIELLLQQHQDRIEQliSEHEVEITGLTEKASSARSQANSIQSQLEIIQEQarnQNSMYM 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 714 EHVAEFEKKLQLMVEERDDLNKLLEN--EQLQKSFVKTQlyeflkqmrPSILEDNEEEDVVTvlkavgeslvtvkEEKHN 791
Cdd:pfam15921 317 RQLSDLESTVSQLRSELREAKRMYEDkiEELEKQLVLAN---------SELTEARTERDQFS-------------QESGN 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 792 LVFEYDARVLELERRIKclqEESVVQCEELRALVRDSEQEKIL--LRKELDEVTSTKEALQCDILEMKNTNEKtslenqt 869
Cdd:pfam15921 375 LDDQLQKLLADLHKREK---ELSLEKEQNKRLWDRDTGNSITIdhLRRELDDRNMEVQRLEALLKAMKSECQG------- 444
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 870 lstRVEELSRSLHSKNEVHNEKdlviehENLRLSLEQRESELQDVRAELMLLKDSLEKSPSVKNDQLSLVKELEEKIESL 949
Cdd:pfam15921 445 ---QMERQMAAIQGKNESLEKV------SSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEAT 515
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 950 EKESKDKDEKISkIKLVAVRAKKELDSNRKEAQTLRDELESVQSEKDRLSASMKEFIqgaESYKNLLLEYDKQSEQLDVE 1029
Cdd:pfam15921 516 NAEITKLRSRVD-LKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQI---ENMTQLVGQHGRTAGAMQVE 591
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1030 KERannFEHHIEDLTKQLRDSTCQYEKLTSDNEDLLARIETLQ-ANARLLEAQileVQRAKGVVEKELEAEKLQKEQKI- 1107
Cdd:pfam15921 592 KAQ---LEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLElEKVKLVNAG---SERLRAVKDIKQERDQLLNEVKTs 665
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1108 -KEHVSTTNELEELQLQFQKEKKQLQKTMQELELVKKDAQ------QTTLMNMEIAD----------------------- 1157
Cdd:pfam15921 666 rNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQseleqtRNTLKSMEGSDghamkvamgmqkqitakrgqida 745
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1158 -----------------YERLMKE----LNQKLTNKNSKIEDLEQEMKIQKQKQETLQEEMTSLQSSVQHYEEKNAQIKQ 1216
Cdd:pfam15921 746 lqskiqfleeamtnankEKHFLKEeknkLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQD 825
|
....*...
gi 1958757302 1217 LLVKTKKE 1224
Cdd:pfam15921 826 IIQRQEQE 833
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
500-1138 |
1.78e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 500 QEFETMKQQ-----QASDVHELQQKLRTAFNEKDALLETINRLQGENEKLLSQELVSELESTMKNLKADNSMYLASLGQK 574
Cdd:COG4913 242 EALEDAREQiellePIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDAL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 575 DTLLQELEAKISSL-AEEKDDFISKIKTSREEIDDLHQKWEREQKLSVELREAAEQAAQHNSELRQRVSELTGKLDEILR 653
Cdd:COG4913 322 REELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELE 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 654 EKSQNDQNIMVQMKTMTEDQEALSSKIKSLyEENNRLHSEKVQLSRDL--EALQ-SQQDFAYkehVAE------------ 718
Cdd:COG4913 402 ALEEALAEAEAALRDLRRELRELEAEIASL-ERRKSNIPARLLALRDAlaEALGlDEAELPF---VGElievrpeeerwr 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 719 --FEK-----KLQLMVEER--DDLNKLLENEQLQKSFVktqlYEFLKQMRPSILEDNEEEDvvtvlkavgeSLVTVKEEK 789
Cdd:COG4913 478 gaIERvlggfALTLLVPPEhyAAALRWVNRLHLRGRLV----YERVRTGLPDPERPRLDPD----------SLAGKLDFK 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 790 HNLVFEYdarvleLERRIKclQEESVVQCEELRALVRD---------------------------------SEQEKI-LL 835
Cdd:COG4913 544 PHPFRAW------LEAELG--RRFDYVCVDSPEELRRHpraitragqvkgngtrhekddrrrirsryvlgfDNRAKLaAL 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 836 RKELDEVTSTKEALQcdilemkntnektslenqtlsTRVEELSRSLHSKNEVHNEKDLVIEHENLRLSLEQRESELQDVR 915
Cdd:COG4913 616 EAELAELEEELAEAE---------------------ERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELE 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 916 AELmllkDSLEKSPSVkndqlslVKELEEKIESLEKESKDKDEKISKiklvavrAKKELDSNRKEAQTLRDELESVQSEK 995
Cdd:COG4913 675 AEL----ERLDASSDD-------LAALEEQLEELEAELEELEEELDE-------LKGEIGRLEKELEQAEEELDELQDRL 736
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 996 DRLSasmkefiQGAESYKNLLLEYDKQSEQLD-VEKERANNFEHHIEDLTKQLRDSTCQYEKLTSD-NEDLLARIETLQA 1073
Cdd:COG4913 737 EAAE-------DLARLELRALLEERFAAALGDaVERELRENLEERIDALRARLNRAEEELERAMRAfNREWPAETADLDA 809
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958757302 1074 NARLLE--AQILEVQRAKGVVEKELEAEKLQKEQkikehvsTTNELEELQLQFQKEKKQLQKTMQEL 1138
Cdd:COG4913 810 DLESLPeyLALLDRLEEDGLPEYEERFKELLNEN-------SIEFVADLLSKLRRAIREIKERIDPL 869
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
904-1274 |
1.82e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.74 E-value: 1.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 904 LEQRESELQDVRAELMLLKDSLEKSPSVKNDQLSLVKELEEKIESLEKESKDKDEKISKI--KLVAVRA-KKELDSNRKE 980
Cdd:PRK03918 160 YENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELreELEKLEKeVKELEELKEE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 981 AQTLRDELESVQSEKDRLSASMKEF-----------------IQGAESYKNLLLEYDKQSEQLDVEKERANNFEHHIEDL 1043
Cdd:PRK03918 240 IEELEKELESLEGSKRKLEEKIRELeerieelkkeieeleekVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1044 TKQLRDSTCQYEKLTSDN---EDLLARIETLQANARLLEAQILEVQRAKGVVE---------KELEAEKLQKEQKIKEHV 1111
Cdd:PRK03918 320 EEEINGIEERIKELEEKEerlEELKKKLKELEKRLEELEERHELYEEAKAKKEelerlkkrlTGLTPEKLEKELEELEKA 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1112 STTNELEELQL-----QFQKEKKQLQKTMQELELVKK----------DAQQTTLMN---MEIADYERLMKELNQKLTNKN 1173
Cdd:PRK03918 400 KEEIEEEISKItarigELKKEIKELKKAIEELKKAKGkcpvcgreltEEHRKELLEeytAELKRIEKELKEIEEKERKLR 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1174 SKIEDLEQEMKIQKQ--KQETLQEEMTSLQSSVQHYEEKNAQIKQLLVKTKKELADAKQAETDHLLLQASLKGELEASQQ 1251
Cdd:PRK03918 480 KELRELEKVLKKESEliKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLA 559
|
410 420
....*....|....*....|...
gi 1958757302 1252 QVEVYKIQLAEMTSEKHKIHEHL 1274
Cdd:PRK03918 560 ELEKKLDELEEELAELLKELEEL 582
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
938-1161 |
1.83e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 1.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 938 LVKELEEKIESLEKESKDKDEkiskiklVAVRAKKELDSNRKEAQTLRDELESVQSEKDRLSASMKEFIQGAESYKNLLL 1017
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPE-------LNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELE 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1018 EYDKQSEQLDVEKERannfehhiEDLTKQLRDSTCQYEKLtsdnedlLARIETLQANARLLEAQILEVQRAKGVVEKELE 1097
Cdd:COG4717 120 KLEKLLQLLPLYQEL--------EALEAELAELPERLEEL-------EERLEELRELEEELEELEAELAELQEELEELLE 184
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958757302 1098 AEKLQKEQKIKEHVsttNELEELQLQFQKEKKQLQKTMQELELVKKDAQQTTLMNMEIADYERL 1161
Cdd:COG4717 185 QLSLATEEELQDLA---EELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERL 245
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
331-735 |
2.05e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.72 E-value: 2.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 331 VRQLEDSLKELESQHSILKDEVTYMNNLKLKLEMDAQHIKDEFfhEREDLEfkINELLLAKEEqsyvVEKLKYEREDLNR 410
Cdd:PRK02224 260 IEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEA--GLDDAD--AEAVEARREE----LEDRDEELRDRLE 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 411 QLCCTVEQHNKEIQRLQEhhqkEISELsETFMSGSEKEKLALMFEIQGLKEQCENLQHEKQEVVLNYESLREMMEILQTE 490
Cdd:PRK02224 332 ECRVAAQAHNEEAESLRE----DADDL-EERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVD 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 491 LGESAGKiSQEFETMKQQQASDVHELQQKLRTAFN---EKDALLETIN------------RLQGENEKllsQELVSELES 555
Cdd:PRK02224 407 LGNAEDF-LEELREERDELREREAELEATLRTARErveEAEALLEAGKcpecgqpvegspHVETIEED---RERVEELEA 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 556 TMKNLKADNSMYLASLGQKDTLlQELEAKISSLAEEKDDFISKIKTSREEIDDLHQKWEREQKLSVELREAAEQAAQHNS 635
Cdd:PRK02224 483 ELEDLEEEVEEVEERLERAEDL-VEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAA 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 636 ELRQRVSELTGKLDEILREKSQNDQNI--MVQMKTMTEDQEALSSKIKSLYE------ENNRLHSEKVQLSRD------- 700
Cdd:PRK02224 562 EAEEEAEEAREEVAELNSKLAELKERIesLERIRTLLAAIADAEDEIERLREkrealaELNDERRERLAEKRErkrelea 641
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 1958757302 701 ------LEALQSQQDFAyKEHVAEFEKKLQLMVEERDDLNK 735
Cdd:PRK02224 642 efdearIEEAREDKERA-EEYLEQVEEKLDELREERDDLQA 681
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
976-1254 |
2.19e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 2.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 976 SNRKEAQTLRDELESVQSEKDRLSASMKEFIQGAESYKNLLLEYDKQSEQLDVEKErannfehhIEDLTKQLRDSTCQYE 1055
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEID--------VASAEREIAELEAELE 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1056 KLTSDNEDLLA---RIETLQANARLLEAQILEVQRAKGVVEKELEaeklQKEQKIKEHVSTTNELEELQLQFQKEkkqlq 1132
Cdd:COG4913 679 RLDASSDDLAAleeQLEELEAELEELEEELDELKGEIGRLEKELE----QAEEELDELQDRLEAAEDLARLELRA----- 749
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1133 ktmqELELVKKDAQQTtlmnmeiADYERLMKELNQKLTNKNSKIEDLEQEM-KIQKQKQETLQEEMTSLQSSVQHYEEKN 1211
Cdd:COG4913 750 ----LLEERFAAALGD-------AVERELRENLEERIDALRARLNRAEEELeRAMRAFNREWPAETADLDADLESLPEYL 818
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1958757302 1212 AQIKQL----LVKTKKELADAKQAETDHLL--LQASLKGELEASQQQVE 1254
Cdd:COG4913 819 ALLDRLeedgLPEYEERFKELLNENSIEFVadLLSKLRRAIREIKERID 867
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
819-994 |
2.35e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 819 EELRALVRDSEQEKILLRKELDEVTSTKEALQCDILEMKNTNEKTSLENQTLStRVEELSRSLHSKNEVHNEKDLVIeHE 898
Cdd:COG4942 65 AALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLG-RQPPLALLLSPEDFLDAVRRLQY-LK 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 899 NLRLSLEQRESELQDVRAELMLLKDSLEKSpsvKNDQLSLVKELEEKIESLEKESKDKDEKISKIKLVAVRAKKELDSNR 978
Cdd:COG4942 143 YLAPARREQAEELRADLAELAALRAELEAE---RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQ 219
|
170
....*....|....*.
gi 1958757302 979 KEAQTLRDELESVQSE 994
Cdd:COG4942 220 QEAEELEALIARLEAE 235
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
421-1004 |
2.53e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 2.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 421 KEIQRLQEHHQKEIS--ELSETFMSGSEKEKLALMFEIQGLKEQCENLQHEKQEVVLNYESLREMMEILqTELGESAGKI 498
Cdd:PRK03918 172 KEIKRRIERLEKFIKrtENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEI-EELEKELESL 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 499 SQEFETMKQqqasDVHELQQKLRTAFNEKDALLETINRLQGENEKLLSQELVSELESTMKNLKADNSMYLASLGQKdtlL 578
Cdd:PRK03918 251 EGSKRKLEE----KIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEE---I 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 579 QELEAKISSLaEEKDDFISKIKTSREEIDDLHQKWEREQKLSVELREAAEQAAQHNSELRQRVSEltgKLDEILREKSQN 658
Cdd:PRK03918 324 NGIEERIKEL-EEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPE---KLEKELEELEKA 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 659 DQNIMVQMKTMTEDQEALSSKIKSLYEENNRLHSEKVQL---SRDLEALQSQQDFA-YKEHVAEFEKKLQLMVEERDDLN 734
Cdd:PRK03918 400 KEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCpvcGRELTEEHRKELLEeYTAELKRIEKELKEIEEKERKLR 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 735 KLLEN-----EQLQKSFVKTQLYEFLKQMRPSILEDNEEEdvvtvLKAVGESLVTVKEekhnlvfeydaRVLELERRIKC 809
Cdd:PRK03918 480 KELRElekvlKKESELIKLKELAEQLKELEEKLKKYNLEE-----LEKKAEEYEKLKE-----------KLIKLKGEIKS 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 810 LQEEsvvqCEELRALvrdsEQEKILLRKELDEVTSTKEALqcdilemkntneKTSLENQTLSTrVEELSRSLHSKNEVHN 889
Cdd:PRK03918 544 LKKE----LEKLEEL----KKKLAELEKKLDELEEELAEL------------LKELEELGFES-VEELEERLKELEPFYN 602
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 890 EkdlviehenlRLSLEQRESELQDVRAELMLLKDSLEKSPSVKNDQLSLVKELEEKIESLEKE-SKDKDEKISKIKLvav 968
Cdd:PRK03918 603 E----------YLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKySEEEYEELREEYL--- 669
|
570 580 590
....*....|....*....|....*....|....*.
gi 1958757302 969 RAKKELDSNRKEAQTLRDELESVQSEKDRLSASMKE 1004
Cdd:PRK03918 670 ELSRELAGLRAELEELEKRREEIKKTLEKLKEELEE 705
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
812-1232 |
2.69e-03 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 42.51 E-value: 2.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 812 EESVVQCEELRALVRDSEQEKILLRKELDEVTSTKEALQcdilemkNTNEKTSLENQTLSTRVEELSRSLhskNEVHNEK 891
Cdd:PTZ00440 456 KKSINQLKTLISIMKSFYDLIISEKDSMDSKEKKESSDS-------NYQEKVDELLQIINSIKEKNNIVN---NNFKNIE 525
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 892 DLVIEHENLRLSLEQRESELQDVRAELMLLKDSLEKSPSVKNDQLSLVKELEEKIESLEKESKDKDEKISKIKLVAVRAK 971
Cdd:PTZ00440 526 DYYITIEGLKNEIEGLIELIKYYLQSIETLIKDEKLKRSMKNDIKNKIKYIEENVDHIKDIISLNDEIDNIIQQIEELIN 605
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 972 KELDSnrkeaqtlrdeLESVQSEKDRLSASMKEFIQgaESYKNLLLEYDKQSEQLDVEKERANNFEHHIEDLTKQLRDST 1051
Cdd:PTZ00440 606 EALFN-----------KEKFINEKNDLQEKVKYILN--KFYKGDLQELLDELSHFLDDHKYLYHEAKSKEDLQTLLNTSK 672
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1052 CQYEKLT----SDNEDLLARIETLQANARLLEAQILEVQRakGVVEKELEAEKLQKEQKIKEHVSTTNELEELQLQFQKE 1127
Cdd:PTZ00440 673 NEYEKLEfmksDNIDNIIKNLKKELQNLLSLKENIIKKQL--NNIEQDISNSLNQYTIKYNDLKSSIEEYKEEEEKLEVY 750
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1128 KKQLQKTMQELELVKKDAQQTTLMNMEIadYERLMKELNQkLTNKNSKIEDleqEMKIQKQKQETLQEEMTSLQSSVQ-- 1205
Cdd:PTZ00440 751 KHQIINRKNEFILHLYENDKDLPDGKNT--YEEFLQYKDT-ILNKENKISN---DINILKENKKNNQDLLNSYNILIQkl 824
|
410 420
....*....|....*....|....*....
gi 1958757302 1206 --HYEEKNAQIKQLLVKTKKELADAKQAE 1232
Cdd:PTZ00440 825 eaHTEKNDEELKQLLQKFPTEDENLNLKE 853
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
577-1285 |
2.81e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.27 E-value: 2.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 577 LLQELEAKISSLAEEKDDFISKIKTSREEIDDLHQKWEREQKLSVELREAAEQAAQHNSELRQRVSELTGKLDEILREKS 656
Cdd:pfam02463 178 LIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSK 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 657 QNDQNIMVQMKTMTEDQEALSSKIKSLYEENNRLHSEKVQLSRDLEALQSQQDF------AYKEHVAEFEKKLQLMVEER 730
Cdd:pfam02463 258 QEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDdeeklkESEKEKKKAEKELKKEKEEI 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 731 DDLNKLLENEQLQKSFVKTQLYEFLKQMRPSILEDNEEEDVVTVLKAVGESLVTVKEEKHNLVFEYDARVLELERRIKCL 810
Cdd:pfam02463 338 EELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQL 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 811 QEEsvvqcEELRALVRDSEQEKILLRKELDEVTSTKEALQCDILEMKNTNEKTSLENQtlstRVEELSRSLHSKNEVHNE 890
Cdd:pfam02463 418 EDL-----LKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKS----EDLLKETQLVKLQEQLEL 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 891 KDLVIEHENLRLSLEQRESELQDVRAELMLLKDSLEKSPSVKNDQLSLVKELEEKiesleKESKDKDEKISKIKLVAVRA 970
Cdd:pfam02463 489 LLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKV-----AISTAVIVEVSATADEVEER 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 971 KKELDSNRKEAQTLRDELESVQSEKDRLSASMKEFIQGAESYKNLLLEYDKQSEQLDVEKERANNFEHHIEDLTKQLRDS 1050
Cdd:pfam02463 564 QKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKA 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1051 TCQYEKLTSDNEDLLARIETLQANARLLEAQILEVQRAKGVVEKELEAEKLQKEQKIKEHVSTTNELEELQLQFQKEKKQ 1130
Cdd:pfam02463 644 KESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELL 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1131 LQKTMQELELVK---KDAQQTTLMNMEIADYERLMKELNQKLTNKNSKIEDLEQEMKIQKQKQeTLQEEMTSLQSSVQHY 1207
Cdd:pfam02463 724 ADRVQEAQDKINeelKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKL-KVEEEKEEKLKAQEEE 802
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958757302 1208 EEKNAQIKQLLVKTKKELADAKQAETDHLLLQASLKGELEASQQQVEVYKIQLAEMTSEKHKIHEHLKTSAEQHQRTL 1285
Cdd:pfam02463 803 LRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELE 880
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
973-1203 |
3.63e-03 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 40.90 E-value: 3.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 973 ELDSNRKEAQTLRDELESVQSEKDRLSASMKE--FIQGAESYKNLLLEYDKQSEQLDVEKERANNFEHHIEDLTKQLRDS 1050
Cdd:pfam09787 1 NLESAKQELADYKQKAARILQSKEKLIASLKEgsGVEGLDSSTALTLELEELRQERDLLREEIQKLRGQIQQLRTELQEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1051 TCQYEkltsdnedllARIETLQANARLLEAQILEVQRAKGVVEKELEaeKLQKEQKIKEhvsttnelEELQLQFQKEKKQ 1130
Cdd:pfam09787 81 EAQQQ----------EEAESSREQLQELEEQLATERSARREAEAELE--RLQEELRYLE--------EELRRSKATLQSR 140
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1958757302 1131 LQKTMQELELVKKDAQQTTLMNMEIADYERLMKELNQKLTNKNSKIEDLEQEMKIQKQKQETLQEEMTSLQSS 1203
Cdd:pfam09787 141 IKDREAEIEKLRNQLTSKSQSSSSQSELENRLHQLTETLIQKQTMLEALSTEKNSLVLQLERMEQQIKELQGE 213
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
579-1195 |
4.65e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.67 E-value: 4.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 579 QELEAKISSLAEEKDDFISKIKTSREEIDDLHQKWEREQKLSVELREAAEqaAQHNSELRQRVSELTGKLDEiLREKSQN 658
Cdd:PTZ00121 1366 AEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAA--AKKKADEAKKKAEEKKKADE-AKKKAEE 1442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 659 DQNIMVQMKTMTEDQEALSSKIKSLYEENNRLHSEKVQLSRDLEALQSQQDFAYKEhvAEFEKKLQLMVEERDDLNKLLE 738
Cdd:PTZ00121 1443 AKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKK--ADEAKKAAEAKKKADEAKKAEE 1520
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 739 N---EQLQKSFVKTQLYEFLKQMRPSILEDNEEEDVVTVLKAVGESLVTVKEEKHNLVFEYDARVLE------LERRIKC 809
Cdd:PTZ00121 1521 AkkaDEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKkaeearIEEVMKL 1600
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 810 LQEESVVQCEELRAlvRDSEQEKILLRKELDEVTSTKEALQCDILEMKNTNEKTSLENQTLSTRVEELSRSlhsknevhn 889
Cdd:PTZ00121 1601 YEEEKKMKAEEAKK--AEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKK--------- 1669
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 890 ekdlviEHENLRLSLEQRESELQDVRAELMLLKDSLEKSpsvKNDQLSlvKELEEKIESLEKESKDKDEKISKIKlvavR 969
Cdd:PTZ00121 1670 ------AEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAK---KAEELK--KKEAEEKKKAEELKKAEEENKIKAE----E 1734
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 970 AKKELDSNRKEAQTLRDElesvQSEKDRLSASMKEFIQGAESYKnllleydkQSEQLDVEKERANNFEHHIEDLTKQLRD 1049
Cdd:PTZ00121 1735 AKKEAEEDKKKAEEAKKD----EEEKKKIAHLKKEEEKKAEEIR--------KEKEAVIEEELDEEDEKRRMEVDKKIKD 1802
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1050 STCQYEKLTSDNEDLLARIETLQanaRLLEAQILEVQRAKGVVEKELEAEKLQKEQKIKEHVSTTNEleelQLQFQKEKK 1129
Cdd:PTZ00121 1803 IFDNFANIIEGGKEGNLVINDSK---EMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNK----EADFNKEKD 1875
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958757302 1130 QLQKTMQELELVKKDAQqttlmnMEIADYERLMKELNQKLTNKNSKIEDLEQEMKIQKQKQETLQE 1195
Cdd:PTZ00121 1876 LKEDDEEEIEEADEIEK------IDKDDIEREIPNNNMAGKNNDIIDDKLDKDEYIKRDAEETREE 1935
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1013-1242 |
5.61e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 40.77 E-value: 5.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1013 KNLLLEYDKQSEQLDVEKerannfeHHIEDLTKQLRDSTCQYEKLTSDN-EDLLARIETLQANARLLEAQILEVQRAKGV 1091
Cdd:PHA02562 173 KDKIRELNQQIQTLDMKI-------DHIQQQIKTYNKNIEEQRKKNGENiARKQNKYDELVEEAKTIKAEIEELTDELLN 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1092 VEKELE--AEKLQK----EQKIKEHVSTTNELEEL----------QLQFQKEKKQLQKTMQELelvKKDAQQTTLMNMEI 1155
Cdd:PHA02562 246 LVMDIEdpSAALNKlntaAAKIKSKIEQFQKVIKMyekggvcptcTQQISEGPDRITKIKDKL---KELQHSLEKLDTAI 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1156 ADYERLMKELNQ---KLTNKNSKIEDLEQEMKIQKQKQETLQEEMTSLQSSVQHYEEKNAQIKQLLVKTKKELADAKQaE 1232
Cdd:PHA02562 323 DELEEIMDEFNEqskKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVK-E 401
|
250
....*....|
gi 1958757302 1233 TDHLLLQASL 1242
Cdd:PHA02562 402 KYHRGIVTDL 411
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1062-1264 |
5.74e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.05 E-value: 5.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1062 EDLLARIETLQANARLLEAQILEVQrakgVVEKELEAekLQKEQKIKEhvsttnELEELQLQFQKEKKQLQKTMQELELV 1141
Cdd:PRK11281 39 ADVQAQLDALNKQKLLEAEDKLVQQ----DLEQTLAL--LDKIDRQKE------ETEQLKQQLAQAPAKLRQAQAELEAL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1142 KKDAQQTTLMNMEIADYERLMKELNQKLTNKNSKIEDLEQ--EMKIQKQKQ-ETLQEEMTSLQSSVQhyeeknaQIKQLL 1218
Cdd:PRK11281 107 KDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEynSQLVSLQTQpERAQAALYANSQRLQ-------QIRNLL 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1958757302 1219 VKTK-------KELADAKQAETDHLLLQASL-KGELEASQQQVEVYKIQLAEMT 1264
Cdd:PRK11281 180 KGGKvggkalrPSQRVLLQAEQALLNAQNDLqRKSLEGNTQLQDLLQKQRDYLT 233
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
82-750 |
5.91e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.11 E-value: 5.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 82 LLLEKAETEQQCL-CLKKENIKMKQEVEDSVTKLEETQKEFEQSHRNYVREMESvKNELIAVHSEHSKEKAALQ--RDLE 158
Cdd:TIGR00618 198 LLTLRSQLLTLCTpCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREA-QEEQLKKQQLLKQLRARIEelRAQE 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 159 GAVHRQAELLEQLKSQSDSEDNVKKLQE---EIQNITAAFEEQTSCLQKQLEATSDEKQQEIIHLQKVIEDNAQHYQKDI 235
Cdd:TIGR00618 277 AVLEETQERINRARKAAPLAAHIKAVTQieqQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIH 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 236 NTFQEEIVQLRATHKEEVNELMSQMETLAKEHEAAVNKLKENRVTLcetsetipenyqcesESLNEDTSDASQENQKCSV 315
Cdd:TIGR00618 357 IRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKEL---------------DILQREQATIDTRTSAFRD 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 316 ALQEDPFAEHTVYDKVRQLEDSLKELESQHSILKDEVTYMNNLKLKLEMDAQHIKD-EFFHERED----------LEFKI 384
Cdd:TIGR00618 422 LQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTkEQIHLQETrkkavvlarlLELQE 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 385 NELLLAKEEQSYVVEKLKYEREDLNRQLCCTVEQHNKEIQRLQEHHQKEISELSETFMSGSEKEK------LALMFEIQG 458
Cdd:TIGR00618 502 EPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQeiqqsfSILTQCDNR 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 459 LKEQCENLQHEKQEV--VLNYESLREMMEILQTELGESAGKISQEFETMKQQQASDVHELQQKLRTAFNEKDALL---ET 533
Cdd:TIGR00618 582 SKEDIPNLQNITVRLqdLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTqerVR 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 534 INRLQGENEKLLSQELVSELESTMKNLKADNSMYLASLGQKDTLLQELEAKISSLAEEkddFISKIKTSREEIDDLHQKW 613
Cdd:TIGR00618 662 EHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDRE---FNEIENASSSLGSDLAARE 738
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 614 EREQKLSVELREAAEQAAQHNSELRQRVSELTGKLDEILREKSQNDQNIMVQMKTMTEDQEALSSKikslyEENNRLHSE 693
Cdd:TIGR00618 739 DALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTL-----EAEIGQEIP 813
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958757302 694 KVQLSRDLEALQSQQDfaYKEHVAEFEKKLQLMVEERDDLNKLLENEQLQKSFVKTQ 750
Cdd:TIGR00618 814 SDEDILNLQCETLVQE--EEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQ 868
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
582-881 |
7.11e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.68 E-value: 7.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 582 EAKISSLAEEKDDFISKIktsRE----EIDDLHQKWEREQKLsvELREAAEQAAQHNSELRQRVSELTGKLDEILREKSQ 657
Cdd:PRK05771 8 KVLIVTLKSYKDEVLEAL---HElgvvHIEDLKEELSNERLR--KLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 658 NDQNIMvqmKTMTEDQEALSSKIKSLYEENNRLHSEKVQLSRDLEALQSQQDFAYKEHVAEFEKKLQLMVEERDdlNKLL 737
Cdd:PRK05771 83 SLEELI---KDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNFDLDLSLLLGFKYVSVFVGTVP--EDKL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 738 ENEQLQKSFVKTQLYEFLKQMRPSIL--EDNEEEDVVTVLKAVGESLVTVKEEKH--NLVFEYDARVLELERRIKCLQee 813
Cdd:PRK05771 158 EELKLESDVENVEYISTDKGYVYVVVvvLKELSDEVEEELKKLGFERLELEEEGTpsELIREIKEELEEIEKERESLL-- 235
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958757302 814 svvqcEELRALVRDSEQEKILLRKELDEVTSTKEALqcdiLEMKNTNEKTSLENQTLSTRVEELSRSL 881
Cdd:PRK05771 236 -----EELKELAKKYLEELLALYEYLEIELERAEAL----SKFLKTDKTFAIEGWVPEDRVKKLKELI 294
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1025-1254 |
7.20e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.20 E-value: 7.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1025 QLDVEKERANNFEHHIEDLTKQLRDSTCQYEKLTSDNEDLLARIETLQANARLLEAQIlevqrakgvveKELEAEKLQKE 1104
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEI-----------AEAEAEIEERR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1105 QKIKEHV-------STTNELEELQLQfqkekKQLQKTMQELELVKKDAQQTtlmNMEIADYERLMKELNQKLTNKNSKIE 1177
Cdd:COG3883 86 EELGERAralyrsgGSVSYLDVLLGS-----ESFSDFLDRLSALSKIADAD---ADLLEELKADKAELEAKKAELEAKLA 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958757302 1178 DLEQEMKIQKQKQETLQEEMTSLQSSVQHYEEKNAQIKQLLVKTKKELADAKQAETDHLLLQASLKGELEASQQQVE 1254
Cdd:COG3883 158 ELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAA 234
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
147-473 |
7.28e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.82 E-value: 7.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 147 SKEKAALQRDLEGAVHRQAELLEQLKSQSDSEDNVKKLQEEIQN---ITAAFEEQTSCLQKQLEATSDEKQQEIIHLQKV 223
Cdd:TIGR02169 680 RERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKeieQLEQEEEKLKERLEELEEDLSSLEQEIENVKSE 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 224 IEDNA---QHYQKDINTFQEEIVQLRAT-----------HKEEVNELMSQMETLAKEHEAAVNKLKENRVTLCETSETIp 289
Cdd:TIGR02169 760 LKELEariEELEEDLHKLEEALNDLEARlshsripeiqaELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQEL- 838
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 290 ENYQCESESlNEDTSDASQENQKCSVALQEDPFAEHTVydKVRQLEDSLKELESQHSILKDEVTYMNNLKLKLEMDAQHI 369
Cdd:TIGR02169 839 QEQRIDLKE-QIKSIEKEIENLNGKKEELEEELEELEA--ALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKK 915
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 370 KDEFFHEREDLEFKINEL----LLAKEEQSYVVEKLKYEREDLNRQLCctveqhNKEIQRLQEHHQKEISELSETFMSGS 445
Cdd:TIGR02169 916 RKRLSELKAKLEALEEELseieDPKGEDEEIPEEELSLEDVQAELQRV------EEEIRALEPVNMLAIQEYEEVLKRLD 989
|
330 340 350
....*....|....*....|....*....|
gi 1958757302 446 E-KEKLA-LMFEIQGLKEQCENLQHEKQEV 473
Cdd:TIGR02169 990 ElKEKRAkLEEERKAILERIEEYEKKKREV 1019
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
386-645 |
7.29e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.68 E-value: 7.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 386 ELLLAKEEQSYVVEKL----KYEREDLNRQLcctveqHNKEIQRLQEHhQKEISELSETFMSGSEKEKLALMFEIQGLKE 461
Cdd:PRK05771 10 LIVTLKSYKDEVLEALhelgVVHIEDLKEEL------SNERLRKLRSL-LTKLSEALDKLRSYLPKLNPLREEKKKVSVK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 462 QCENLQHEKQEVVLNYESlremmeilqtELGESAGKISqEFETMKQqqasdvhELQQKLR-----TAFNEKDALLE---- 532
Cdd:PRK05771 83 SLEELIKDVEEELEKIEK----------EIKELEEEIS-ELENEIK-------ELEQEIErlepwGNFDLDLSLLLgfky 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 533 ------TINRLQGENEKLLSQELVSELESTMKNLKADNSMYLASLGQK-DTLLQELEAK-------------ISSLAEEK 592
Cdd:PRK05771 145 vsvfvgTVPEDKLEELKLESDVENVEYISTDKGYVYVVVVVLKELSDEvEEELKKLGFErleleeegtpselIREIKEEL 224
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1958757302 593 DDFISKIKTSREEIDDLHQKWEREQKLSVELREAAEQAAqhNSELRQRVSELT 645
Cdd:PRK05771 225 EEIEKERESLLEELKELAKKYLEELLALYEYLEIELERA--EALSKFLKTDKT 275
|
|
| DUF4407 |
pfam14362 |
Domain of unknown function (DUF4407); This family of proteins is found in bacteria. Proteins ... |
940-1073 |
9.96e-03 |
|
Domain of unknown function (DUF4407); This family of proteins is found in bacteria. Proteins in this family are typically between 366 and 597 amino acids in length. There is a single completely conserved residue R that may be functionally important.
Pssm-ID: 464151 [Multi-domain] Cd Length: 295 Bit Score: 39.54 E-value: 9.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 940 KELEEKIESLEKESKDKDEKISKIKLVAVRAK-KELDSNRKEAQTLRDELE-SVQSEKDRLSASMKEFIQGAESYKNLLL 1017
Cdd:pfam14362 110 RELLEIQQEEADAAKAQLAAAYRARLAELEAQiAALDAEIDAAEARLDALQaEARCELDGTPGTGTGVPGDGPVAKTKQA 189
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958757302 1018 EYDKQSEQLDVEKERAN----NFEHHIEDLTKQLRDSTCQYEKLTSDNEDLLARIETLQA 1073
Cdd:pfam14362 190 QLDAAQAELAALQAQNDarlaALRAELARLTAERAAARARSQAAIDGDDGLLARLEALNR 249
|
|
| |
