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Conserved domains on  [gi|1958758283|ref|XP_038955076|]
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transforming growth factor beta regulator 1-like [Rattus norvegicus]

Protein Classification

FYRN and FYRC domain-containing protein( domain architecture ID 10532225)

FYRN and FYRC domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FYRN pfam05964
F/Y-rich N-terminus; This region is normally found in the trithorax/ALL1 family proteins. It ...
 182-232 1.01e-25

F/Y-rich N-terminus; This region is normally found in the trithorax/ALL1 family proteins. It is similar to SMART:SM00541.


:

Pssm-ID: 461787  Cd Length: 51  Bit Score: 98.35  E-value: 1.01e-25
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1958758283 182 GGLTVYSLGEIITNRPGFHDENAIYPVGYCSTRVYASMKCPDQKCLYTCQI 232
Cdd:pfam05964   1 GSLTVLSLGEIVPDRPAFHTERYIYPVGYKSTRLYWSTKDPRKRCRYTCEI 51
FYRC pfam05965
F/Y rich C-terminus; This region is normally found in the trithorax/ALL1 family proteins. It ...
 238-319 1.31e-23

F/Y rich C-terminus; This region is normally found in the trithorax/ALL1 family proteins. It is similar to SMART:SM00542.


:

Pssm-ID: 461788  Cd Length: 83  Bit Score: 93.44  E-value: 1.31e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758283 238 QPQFEIVPEDDPRNTIVGSSADACYEELLRAI----SAATGKLMPNPLSCGADFFGFSHPTIHNLIQSCPEAQNCVNYqw 313
Cdd:pfam05965   1 GPLFRVTVEEDPDESFEGSSPTKCWSMVLERVqelrREAGLKLKLPESISGEDMFGLTHPAVVRLIESLPGAEKCTNY-- 78


                  ....*.
gi 1958758283 314 vKFDAC 319
Cdd:pfam05965  79 -KFRYG 83
 
Name Accession Description Interval E-value
FYRN pfam05964
F/Y-rich N-terminus; This region is normally found in the trithorax/ALL1 family proteins. It ...
 182-232 1.01e-25

F/Y-rich N-terminus; This region is normally found in the trithorax/ALL1 family proteins. It is similar to SMART:SM00541.


Pssm-ID: 461787  Cd Length: 51  Bit Score: 98.35  E-value: 1.01e-25
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1958758283 182 GGLTVYSLGEIITNRPGFHDENAIYPVGYCSTRVYASMKCPDQKCLYTCQI 232
Cdd:pfam05964   1 GSLTVLSLGEIVPDRPAFHTERYIYPVGYKSTRLYWSTKDPRKRCRYTCEI 51
FYRC pfam05965
F/Y rich C-terminus; This region is normally found in the trithorax/ALL1 family proteins. It ...
 238-319 1.31e-23

F/Y rich C-terminus; This region is normally found in the trithorax/ALL1 family proteins. It is similar to SMART:SM00542.


Pssm-ID: 461788  Cd Length: 83  Bit Score: 93.44  E-value: 1.31e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758283 238 QPQFEIVPEDDPRNTIVGSSADACYEELLRAI----SAATGKLMPNPLSCGADFFGFSHPTIHNLIQSCPEAQNCVNYqw 313
Cdd:pfam05965   1 GPLFRVTVEEDPDESFEGSSPTKCWSMVLERVqelrREAGLKLKLPESISGEDMFGLTHPAVVRLIESLPGAEKCTNY-- 78


                  ....*.
gi 1958758283 314 vKFDAC 319
Cdd:pfam05965  79 -KFRYG 83
FYRN smart00541
FY-rich domain, N-terminal region; is sometimes closely juxtaposed with the C-terminal region ...
 191-234 5.62e-15

FY-rich domain, N-terminal region; is sometimes closely juxtaposed with the C-terminal region (FYRC), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.


Pssm-ID: 128814  Cd Length: 44  Bit Score: 68.46  E-value: 5.62e-15
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 1958758283  191 EIITNRPGFHDENAIYPVGYCSTRVYASMKCPDQKCLYTCQIKD 234
Cdd:smart00541   1 LLPIQGKLFHSESAIFPVGYKSTRKYWSVKDPNRRCLYSCVIDE 44
FYRC smart00542
FY-rich domain, C-terminal region; is sometimes closely juxtaposed with the N-terminal region ...
 240-312 1.58e-11

FY-rich domain, C-terminal region; is sometimes closely juxtaposed with the N-terminal region (FYRN), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.


Pssm-ID: 197781  Cd Length: 86  Bit Score: 60.00  E-value: 1.58e-11
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958758283  240 QFEIVPEDDPRNTIVGSSADACYEELL----RAISAATGKLMPNPLSCGADFFGFSHPTIHNLIQSCPEAQNCVNYQ 312
Cdd:smart00542   1 LFRVEIESDPGEVFKGESPEKCWEMVLervqEARIAADLLQLLPEGVSGEEMFGLSSPAVVKLIEALPGVHQCTNYW 77
 
Name Accession Description Interval E-value
FYRN pfam05964
F/Y-rich N-terminus; This region is normally found in the trithorax/ALL1 family proteins. It ...
 182-232 1.01e-25

F/Y-rich N-terminus; This region is normally found in the trithorax/ALL1 family proteins. It is similar to SMART:SM00541.


Pssm-ID: 461787  Cd Length: 51  Bit Score: 98.35  E-value: 1.01e-25
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1958758283 182 GGLTVYSLGEIITNRPGFHDENAIYPVGYCSTRVYASMKCPDQKCLYTCQI 232
Cdd:pfam05964   1 GSLTVLSLGEIVPDRPAFHTERYIYPVGYKSTRLYWSTKDPRKRCRYTCEI 51
FYRC pfam05965
F/Y rich C-terminus; This region is normally found in the trithorax/ALL1 family proteins. It ...
 238-319 1.31e-23

F/Y rich C-terminus; This region is normally found in the trithorax/ALL1 family proteins. It is similar to SMART:SM00542.


Pssm-ID: 461788  Cd Length: 83  Bit Score: 93.44  E-value: 1.31e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958758283 238 QPQFEIVPEDDPRNTIVGSSADACYEELLRAI----SAATGKLMPNPLSCGADFFGFSHPTIHNLIQSCPEAQNCVNYqw 313
Cdd:pfam05965   1 GPLFRVTVEEDPDESFEGSSPTKCWSMVLERVqelrREAGLKLKLPESISGEDMFGLTHPAVVRLIESLPGAEKCTNY-- 78


                  ....*.
gi 1958758283 314 vKFDAC 319
Cdd:pfam05965  79 -KFRYG 83
FYRN smart00541
FY-rich domain, N-terminal region; is sometimes closely juxtaposed with the C-terminal region ...
 191-234 5.62e-15

FY-rich domain, N-terminal region; is sometimes closely juxtaposed with the C-terminal region (FYRC), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.


Pssm-ID: 128814  Cd Length: 44  Bit Score: 68.46  E-value: 5.62e-15
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 1958758283  191 EIITNRPGFHDENAIYPVGYCSTRVYASMKCPDQKCLYTCQIKD 234
Cdd:smart00541   1 LLPIQGKLFHSESAIFPVGYKSTRKYWSVKDPNRRCLYSCVIDE 44
FYRC smart00542
FY-rich domain, C-terminal region; is sometimes closely juxtaposed with the N-terminal region ...
 240-312 1.58e-11

FY-rich domain, C-terminal region; is sometimes closely juxtaposed with the N-terminal region (FYRN), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.


Pssm-ID: 197781  Cd Length: 86  Bit Score: 60.00  E-value: 1.58e-11
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958758283  240 QFEIVPEDDPRNTIVGSSADACYEELL----RAISAATGKLMPNPLSCGADFFGFSHPTIHNLIQSCPEAQNCVNYQ 312
Cdd:smart00542   1 LFRVEIESDPGEVFKGESPEKCWEMVLervqEARIAADLLQLLPEGVSGEEMFGLSSPAVVKLIEALPGVHQCTNYW 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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