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Conserved domains on  [gi|1958750522|ref|XP_038958188|]
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cystine/glutamate transporter isoform X3 [Rattus norvegicus]

Protein Classification

amino acid permease( domain architecture ID 1000062)

amino acid permease facilitates the transport of amino acids, similar to solute carrier family 7 (SLC7) members

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
2A0308 super family cl30119
L-type amino acid transporter; [Transport and binding proteins, Amino acids, peptides and ...
 1-440 0e+00

L-type amino acid transporter; [Transport and binding proteins, Amino acids, peptides and amines]


The actual alignment was detected with superfamily member TIGR00911:

Pssm-ID: 273332 [Multi-domain]  Cd Length: 501  Bit Score: 644.88  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522   1 MVRKPVVATISKGGYLQGNVSGRLPSVGDQEPPGHEKVVLKKKITLLRGVSIIIGTVIGSGIFISPKGILQNTGSVGMSL 80
Cdd:TIGR00911   1 MSKGRVFRSQSNATNYQFSSSGRKKSVSASTVDGGEAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522  81 VFWSACGVLSLFGALSYAELGTSIKKSGGHYTYILEVFGPLLAFVRVWVELLVIRPGATAVISLAFGRYILEPFFIQCEI 160
Cdd:TIGR00911  81 IMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 161 PELAIKLVTAVGI--------------------------------------------RQTHHFKDAFSGRDTNLMGLPLA 196
Cdd:TIGR00911 161 PEWAIRLVAVLCVllltlvnclsvkwatrvqdiftackllallliiitgwvqlgkggVESLNPKNAFEGTETSAGGIVLA 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 197 FYYGMYAYAGWFYLNFITEEVDNPEKTIPLAICISMAIITVGYVLTNVAYFTTISAEELLQSSAVAVTFSERLLGKFSLA 276
Cdd:TIGR00911 241 FYSGIWAYGGWNYLNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLGVMSWA 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 277 VPIFVALSCFGSMNGGVFAVSRLFYVASREGHLPEILSMIHVHKHTPLPAVIVLHPLTMIMLFSGDLYSLLNFLSFARWL 356
Cdd:TIGR00911 321 MPALVGLSCFGSVNGSLFSSSRLFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWL 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 357 FMGLAVAGLIYLRYKRPDMHRPFKVPLFIPALFSFTCLFMVVLSLYSDPFSTGVGFLITLTGVPAYYLFIVWDKKPKWFR 436
Cdd:TIGR00911 401 FNALAVAGLLWLRYKRPEMNRPIKVPLFFPVFFLLSCLFLIILSLYSPPVGCGVGFIIMLTGVPVYFFGVWWQNKPKWFR 480


                  ....
gi 1958750522 437 RLSV 440
Cdd:TIGR00911 481 YLIV 484
 
Name Accession Description Interval E-value
2A0308 TIGR00911
L-type amino acid transporter; [Transport and binding proteins, Amino acids, peptides and ...
 1-440 0e+00

L-type amino acid transporter; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273332 [Multi-domain]  Cd Length: 501  Bit Score: 644.88  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522   1 MVRKPVVATISKGGYLQGNVSGRLPSVGDQEPPGHEKVVLKKKITLLRGVSIIIGTVIGSGIFISPKGILQNTGSVGMSL 80
Cdd:TIGR00911   1 MSKGRVFRSQSNATNYQFSSSGRKKSVSASTVDGGEAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522  81 VFWSACGVLSLFGALSYAELGTSIKKSGGHYTYILEVFGPLLAFVRVWVELLVIRPGATAVISLAFGRYILEPFFIQCEI 160
Cdd:TIGR00911  81 IMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 161 PELAIKLVTAVGI--------------------------------------------RQTHHFKDAFSGRDTNLMGLPLA 196
Cdd:TIGR00911 161 PEWAIRLVAVLCVllltlvnclsvkwatrvqdiftackllallliiitgwvqlgkggVESLNPKNAFEGTETSAGGIVLA 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 197 FYYGMYAYAGWFYLNFITEEVDNPEKTIPLAICISMAIITVGYVLTNVAYFTTISAEELLQSSAVAVTFSERLLGKFSLA 276
Cdd:TIGR00911 241 FYSGIWAYGGWNYLNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLGVMSWA 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 277 VPIFVALSCFGSMNGGVFAVSRLFYVASREGHLPEILSMIHVHKHTPLPAVIVLHPLTMIMLFSGDLYSLLNFLSFARWL 356
Cdd:TIGR00911 321 MPALVGLSCFGSVNGSLFSSSRLFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWL 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 357 FMGLAVAGLIYLRYKRPDMHRPFKVPLFIPALFSFTCLFMVVLSLYSDPFSTGVGFLITLTGVPAYYLFIVWDKKPKWFR 436
Cdd:TIGR00911 401 FNALAVAGLLWLRYKRPEMNRPIKVPLFFPVFFLLSCLFLIILSLYSPPVGCGVGFIIMLTGVPVYFFGVWWQNKPKWFR 480


                  ....
gi 1958750522 437 RLSV 440
Cdd:TIGR00911 481 YLIV 484
PotE COG0531
Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism];
40-425 1.27e-54

Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism];


Pssm-ID: 440297 [Multi-domain]  Cd Length: 438  Bit Score: 188.18  E-value: 1.27e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522  40 LKKKITLLRGVSIIIGTVIGSGIFISPKGILQNTGsvGMSLVFWSACGVLSLFGALSYAELGTSIKKSGGHYTYILEVFG 119
Cdd:COG0531     9 LKRKLGLFDLVALGVGAIIGAGIFVLPGLAAGLAG--PAAILAWLIAGLLALLVALSYAELASAFPRAGGAYTYARRALG 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 120 PLLAFVRVWVeLLVIRPGATAVISLAFGRYI--LEPFFIQCEIPELAIKLVTAV---GIRQT------------------ 176
Cdd:COG0531    87 PLLGFLAGWA-LLLSYVLAVAAVAVAFGGYLssLFPAGGSVLIALVLILLLTLLnlrGVKESakvnniltvlkllvlllf 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 177 -----HHFKDA----FSGRDTNLMGLPLAFYYGMYAYAGWFYLNFITEEVDNPEKTIPLAICISMAIITVGYVLTNVAYF 247
Cdd:COG0531   166 ivvglFAFDPAnftpFLPAGGGLSGVLAALALAFFAFTGFEAIANLAEEAKNPKRNIPRAIILSLLIVGVLYILVSLALT 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 248 TTISAEELLQSSAVAVTFSERLLGK-FSLAVPIFVALSCFGSMNGGVFAVSRLFYVASREGHLPEILSMIHVHKHTPLPA 326
Cdd:COG0531   246 GVVPYDELAASGAPLADAAEAVFGPwGAILIALGALLSLLGALNASILGASRLLYAMARDGLLPKVFAKVHPRFGTPVNA 325

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 327 VIVLHPLTMIMLFSG--DLYSLLNFLSFARWLFMGLAVAGLIYLRYKRPDMHRPFKVPLFIPALFSFtcLFMVVLSLYSD 404
Cdd:COG0531   326 ILLTGVIALLLLLLGaaSFTALASLASVGVLLAYLLVALAVIVLRRRRPDLPRPFRVPLPLIPILGI--LLCLFLLYLLG 403

                         410       420
                  ....*....|....*....|.
gi 1958750522 405 PFSTGVGFLITLTGVPAYYLF 425
Cdd:COG0531   404 PGALLIGLVLLAIGLLLYLLY 424
AA_permease_2 pfam13520
Amino acid permease;
44-419 3.46e-31

Amino acid permease;


Pssm-ID: 404414 [Multi-domain]  Cd Length: 427  Bit Score: 124.34  E-value: 3.46e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522  44 ITLLRGVSIIIGTVIGSGIFISPkgilqNTGSVGMSLVFWS--ACGVLSLFGALSYAELGTSIKKSGGHYTYILEVFGPL 121
Cdd:pfam13520   1 LGLLSAFALVIGSVIGSGIFVAP-----LVASGGPALIVWGwiAAIIFSLAVGLVYAELSSALPRSGGIYVYLENAFGKF 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 122 LAFVRVWVELLVIRPGATAVISLAFGRYILE----------------------PFFIQCEIPELAIKL------------ 167
Cdd:pfam13520  76 VAFLAGWSNWFAYVLGLASSASVAASYLLSAlgpdlvpttwltygiaiailiiFAIINIRGVRESAKIqnilgilklllp 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 168 -----VTAVGIRQTHHFKDAFSGRDTNL----MGLPLAFYYGMYAYAGWFYLNFITEEVdnPEKTIPLAICISMAIITVG 238
Cdd:pfam13520 156 liliiILGLVTADGGGFNLLSGEWHTFFpdgwPGVFAGFLGVLWSFTGFESAANVSEEV--KKRNVPKAIFIGVIIVGVL 233

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 239 YVLTNVAYFTTISAEELLQSS----AVAVTFSERLLGKFSLAVPIFVALSCFGSMNGGVFAVSRLFYVASREGHLPEILS 314
Cdd:pfam13520 234 YILVNIAFFGVVPDDEIALSSglgqVAALLFQAVGGKWGAIIVVILLALSLLGAVNTAIVGASRLLYALARDGVLPFSRF 313

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 315 MIHVHKH-TPLPAVIVLHPLTMIMLF-----SGDLYSLLNFLSFARWLFMGLAVAGLIYLRYKRPDMHRPFKVPLFIPAL 388
Cdd:pfam13520 314 FAKVNKFgSPIRAIILTAILSLILLLlfllsPAAYNALLSLSAYGYLLSYLLPIIGLLILRKKRPDLGRIPGRWPVAIFG 393

                         410       420       430
                  ....*....|....*....|....*....|.
gi 1958750522 389 FSFTCLFMVVLSLYSDPFSTGVGFLITLTGV 419
Cdd:pfam13520 394 ILFSLFLIVALFFPPVGPATGSSLNYAIILI 424
frlA PRK11357
amino acid permease;
40-433 1.12e-14

amino acid permease;


Pssm-ID: 183096 [Multi-domain]  Cd Length: 445  Bit Score: 75.66  E-value: 1.12e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522  40 LKKKITLLRGVSIIIGTVIGSGIFISPKGILQNTGSVGMSLVFWSACGVLSLFGALSYAELGTSIKKSGGHYTYILEVFG 119
Cdd:PRK11357    6 LQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNAGS 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 120 PLLAFVRVWVELLVIRPGATAVISLAFGRYIlePFFIqcEIPELAIKLVTAVGI-------RQTHHFKDAFSGRDTNLMG 192
Cdd:PRK11357   86 RPLAFLSGWASFWANDAPSLSIMALAIVSNL--GFLT--PIDPLLGKFIAAGLIiafmllhLRSVEGGAAFQTLITIAKI 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 193 LPLAFYYGM-----------------------------------YAYAGWFYLNFITEEVDNPEKTIPLAICISMAIITV 237
Cdd:PRK11357  162 IPFTIVIGLgifwfkaenfaaptttaigatgsfmallagisatsWSYTGMASICYMTGEIKNPGKTMPRALIGSCLLVLV 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 238 GYVLTNVAYFTTISAEELLQSS---AVAVTFSERLLGKFSLAVPIFVALSCFGSMNGGVFAVSRLFYVASREGHLPEILS 314
Cdd:PRK11357  242 LYTLLALVISGLMPFDKLANSEtpiSDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFFKCFG 321

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 315 MIHVHKHTPLPAVIVLHPLTMIMLFSGDLYSLLNFLSFARWLFMGLAVAGLIYLRyKRPDMHRPFKVPLF--IPALFSFT 392
Cdd:PRK11357  322 HVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWCR-KRDDYKPLWRTPAFglMTTLAIAS 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|..
gi 1958750522 393 CLFMVVLSLYSDPFSTGV-GFLITLTGVPAYYLfivWDKKPK 433
Cdd:PRK11357  401 SLILVASTFVWAPIPGLIcAVIVIATGLPAYAF---WAKRSR 439
 
Name Accession Description Interval E-value
2A0308 TIGR00911
L-type amino acid transporter; [Transport and binding proteins, Amino acids, peptides and ...
 1-440 0e+00

L-type amino acid transporter; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273332 [Multi-domain]  Cd Length: 501  Bit Score: 644.88  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522   1 MVRKPVVATISKGGYLQGNVSGRLPSVGDQEPPGHEKVVLKKKITLLRGVSIIIGTVIGSGIFISPKGILQNTGSVGMSL 80
Cdd:TIGR00911   1 MSKGRVFRSQSNATNYQFSSSGRKKSVSASTVDGGEAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522  81 VFWSACGVLSLFGALSYAELGTSIKKSGGHYTYILEVFGPLLAFVRVWVELLVIRPGATAVISLAFGRYILEPFFIQCEI 160
Cdd:TIGR00911  81 IMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 161 PELAIKLVTAVGI--------------------------------------------RQTHHFKDAFSGRDTNLMGLPLA 196
Cdd:TIGR00911 161 PEWAIRLVAVLCVllltlvnclsvkwatrvqdiftackllallliiitgwvqlgkggVESLNPKNAFEGTETSAGGIVLA 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 197 FYYGMYAYAGWFYLNFITEEVDNPEKTIPLAICISMAIITVGYVLTNVAYFTTISAEELLQSSAVAVTFSERLLGKFSLA 276
Cdd:TIGR00911 241 FYSGIWAYGGWNYLNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLGVMSWA 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 277 VPIFVALSCFGSMNGGVFAVSRLFYVASREGHLPEILSMIHVHKHTPLPAVIVLHPLTMIMLFSGDLYSLLNFLSFARWL 356
Cdd:TIGR00911 321 MPALVGLSCFGSVNGSLFSSSRLFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWL 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 357 FMGLAVAGLIYLRYKRPDMHRPFKVPLFIPALFSFTCLFMVVLSLYSDPFSTGVGFLITLTGVPAYYLFIVWDKKPKWFR 436
Cdd:TIGR00911 401 FNALAVAGLLWLRYKRPEMNRPIKVPLFFPVFFLLSCLFLIILSLYSPPVGCGVGFIIMLTGVPVYFFGVWWQNKPKWFR 480


                  ....
gi 1958750522 437 RLSV 440
Cdd:TIGR00911 481 YLIV 484
PotE COG0531
Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism];
40-425 1.27e-54

Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism];


Pssm-ID: 440297 [Multi-domain]  Cd Length: 438  Bit Score: 188.18  E-value: 1.27e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522  40 LKKKITLLRGVSIIIGTVIGSGIFISPKGILQNTGsvGMSLVFWSACGVLSLFGALSYAELGTSIKKSGGHYTYILEVFG 119
Cdd:COG0531     9 LKRKLGLFDLVALGVGAIIGAGIFVLPGLAAGLAG--PAAILAWLIAGLLALLVALSYAELASAFPRAGGAYTYARRALG 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 120 PLLAFVRVWVeLLVIRPGATAVISLAFGRYI--LEPFFIQCEIPELAIKLVTAV---GIRQT------------------ 176
Cdd:COG0531    87 PLLGFLAGWA-LLLSYVLAVAAVAVAFGGYLssLFPAGGSVLIALVLILLLTLLnlrGVKESakvnniltvlkllvlllf 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 177 -----HHFKDA----FSGRDTNLMGLPLAFYYGMYAYAGWFYLNFITEEVDNPEKTIPLAICISMAIITVGYVLTNVAYF 247
Cdd:COG0531   166 ivvglFAFDPAnftpFLPAGGGLSGVLAALALAFFAFTGFEAIANLAEEAKNPKRNIPRAIILSLLIVGVLYILVSLALT 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 248 TTISAEELLQSSAVAVTFSERLLGK-FSLAVPIFVALSCFGSMNGGVFAVSRLFYVASREGHLPEILSMIHVHKHTPLPA 326
Cdd:COG0531   246 GVVPYDELAASGAPLADAAEAVFGPwGAILIALGALLSLLGALNASILGASRLLYAMARDGLLPKVFAKVHPRFGTPVNA 325

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 327 VIVLHPLTMIMLFSG--DLYSLLNFLSFARWLFMGLAVAGLIYLRYKRPDMHRPFKVPLFIPALFSFtcLFMVVLSLYSD 404
Cdd:COG0531   326 ILLTGVIALLLLLLGaaSFTALASLASVGVLLAYLLVALAVIVLRRRRPDLPRPFRVPLPLIPILGI--LLCLFLLYLLG 403

                         410       420
                  ....*....|....*....|.
gi 1958750522 405 PFSTGVGFLITLTGVPAYYLF 425
Cdd:COG0531   404 PGALLIGLVLLAIGLLLYLLY 424
AA_permease_2 pfam13520
Amino acid permease;
44-419 3.46e-31

Amino acid permease;


Pssm-ID: 404414 [Multi-domain]  Cd Length: 427  Bit Score: 124.34  E-value: 3.46e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522  44 ITLLRGVSIIIGTVIGSGIFISPkgilqNTGSVGMSLVFWS--ACGVLSLFGALSYAELGTSIKKSGGHYTYILEVFGPL 121
Cdd:pfam13520   1 LGLLSAFALVIGSVIGSGIFVAP-----LVASGGPALIVWGwiAAIIFSLAVGLVYAELSSALPRSGGIYVYLENAFGKF 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 122 LAFVRVWVELLVIRPGATAVISLAFGRYILE----------------------PFFIQCEIPELAIKL------------ 167
Cdd:pfam13520  76 VAFLAGWSNWFAYVLGLASSASVAASYLLSAlgpdlvpttwltygiaiailiiFAIINIRGVRESAKIqnilgilklllp 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 168 -----VTAVGIRQTHHFKDAFSGRDTNL----MGLPLAFYYGMYAYAGWFYLNFITEEVdnPEKTIPLAICISMAIITVG 238
Cdd:pfam13520 156 liliiILGLVTADGGGFNLLSGEWHTFFpdgwPGVFAGFLGVLWSFTGFESAANVSEEV--KKRNVPKAIFIGVIIVGVL 233

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 239 YVLTNVAYFTTISAEELLQSS----AVAVTFSERLLGKFSLAVPIFVALSCFGSMNGGVFAVSRLFYVASREGHLPEILS 314
Cdd:pfam13520 234 YILVNIAFFGVVPDDEIALSSglgqVAALLFQAVGGKWGAIIVVILLALSLLGAVNTAIVGASRLLYALARDGVLPFSRF 313

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 315 MIHVHKH-TPLPAVIVLHPLTMIMLF-----SGDLYSLLNFLSFARWLFMGLAVAGLIYLRYKRPDMHRPFKVPLFIPAL 388
Cdd:pfam13520 314 FAKVNKFgSPIRAIILTAILSLILLLlfllsPAAYNALLSLSAYGYLLSYLLPIIGLLILRKKRPDLGRIPGRWPVAIFG 393

                         410       420       430
                  ....*....|....*....|....*....|.
gi 1958750522 389 FSFTCLFMVVLSLYSDPFSTGVGFLITLTGV 419
Cdd:pfam13520 394 ILFSLFLIVALFFPPVGPATGSSLNYAIILI 424
2A0305 TIGR00908
ethanolamine permease; The three genes used as the seed for this model (from Burkholderia ...
 40-425 2.45e-21

ethanolamine permease; The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily. [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 129986 [Multi-domain]  Cd Length: 442  Bit Score: 96.06  E-value: 2.45e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522  40 LKKKITLLRGVSIIIGTVIgSGIFISPKGILQNTGSVGMslvFWSACGVLSLFGAL--SYAELGTSIKKSGGHYTYILEV 117
Cdd:TIGR00908   5 LKKTLATWQLWGIGVGYVI-SGDYAGWNFGLAQGGWGGF---VVATLLVATMYLTFcfSLAELSTMIPTAGGGYGFARRA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 118 FGPL---LAFVRVWVELLVirpgATAVISLAFGRYI------LEPFFI-----------------QCEIPELAIKLVTAV 171
Cdd:TIGR00908  81 FGPWggfLAGTAILIEFAF----APPAIACFIGAYCeslfpvGPGWLAalvfyivfiginilgvgEAAKLEFVVTAVAII 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 172 GI-----RQTHHFKDA--FSGRDTNLMGLPLAFYYGMYA---YAGWFYLN-----FITEEVDNPEKTIPLAICISMAIIT 236
Cdd:TIGR00908 157 ALgvfigAMVPHFDSAnlFNGPQTGASSFLPGAYVGVFAaipFAIWFFLAvegvaMAAEETKNPKRDIPRGLIGAILTLL 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 237 VGYVLTNVAYFTTISAEELLQSSAVAVTFSERLLGKFSLAVPIFVALSCFG---SMNGGVFAVSRLFYVASREGHLPEIL 313
Cdd:TIGR00908 237 ALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGliaSFHGIIYGYSRQIFALSRAGYLPESL 316

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 314 SMIHvHKHTPLPAVIVLHPLTMIMLFSGDLYSLLNFLSFARWLFMGLAVAGLIYLRYKRPDMHRPFKVPLFI--PALFSF 391
Cdd:TIGR00908 317 SKVN-RKKAPVLAIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRIRRPDMERPYRTPGGIltPGVALV 395

                         410       420       430
                  ....*....|....*....|....*....|....
gi 1958750522 392 TCLFMVVLSLYSDPFSTGVGFLITLTGVPAYYLF 425
Cdd:TIGR00908 396 LACVALVTGFYVDPRVVVGAVAIFVVLIGYYFLY 429
2A0303 TIGR00906
cationic amino acid transport permease; [Transport and binding proteins, Amino acids, peptides ...
 35-371 1.93e-20

cationic amino acid transport permease; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273330 [Multi-domain]  Cd Length: 557  Bit Score: 94.11  E-value: 1.93e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522  35 HEKVVLKKKITLLRGVSIIIGTVIGSGIFISPKGILQNTGSVGMSLVFWSAcGVLSLFGALSYAELGTSIKKSGGHYTYI 114
Cdd:TIGR00906  21 REESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLIS-GLAAVLSGFCYAEFGARVPKAGSAYLYS 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 115 LEVFGPLLAFVRVWVELLVIRPGATAVI---SLAFGRYI---LEPFFIQ---------CEIPE-------LAIKLVTAVG 172
Cdd:TIGR00906 100 YVTVGELWAFITGWNLILEYVIGTAAVArswSAYFDELLnkqIGQFRRTyfklnydglAEYPDffavcliLLLAVLLSFG 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 173 IRQTHHFKDAFSG----------------------RDTNLMGLPLAFYYGM-----------YAYAGWFYLNFITEEVDN 219
Cdd:TIGR00906 180 VKESAWVNKIFTAinilvllfviiagftkadvanwSITEEKGAGGFMPYGFtgvlsgaatcfFAFIGFDAIATTGEEVKN 259

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 220 PEKTIPLAICISMAIITVGYVLTNVAYFTTISAEELLQSSAVAVTFSERLLG--KFSLAVPIFVALSCfgSMNGGVFAVS 297
Cdd:TIGR00906 260 PQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWDpaKYIVAVGALCGMST--SLLGGMFPLP 337

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958750522 298 RLFYVASREGHLPEILSMIHVHKHTPLPAVIVLHPLTMIMLFSGDLYSLLNFLSFARWLFMGLAVAGLIYLRYK 371
Cdd:TIGR00906 338 RVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQ 411
frlA PRK11357
amino acid permease;
40-433 1.12e-14

amino acid permease;


Pssm-ID: 183096 [Multi-domain]  Cd Length: 445  Bit Score: 75.66  E-value: 1.12e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522  40 LKKKITLLRGVSIIIGTVIGSGIFISPKGILQNTGSVGMSLVFWSACGVLSLFGALSYAELGTSIKKSGGHYTYILEVFG 119
Cdd:PRK11357    6 LQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNAGS 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 120 PLLAFVRVWVELLVIRPGATAVISLAFGRYIlePFFIqcEIPELAIKLVTAVGI-------RQTHHFKDAFSGRDTNLMG 192
Cdd:PRK11357   86 RPLAFLSGWASFWANDAPSLSIMALAIVSNL--GFLT--PIDPLLGKFIAAGLIiafmllhLRSVEGGAAFQTLITIAKI 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 193 LPLAFYYGM-----------------------------------YAYAGWFYLNFITEEVDNPEKTIPLAICISMAIITV 237
Cdd:PRK11357  162 IPFTIVIGLgifwfkaenfaaptttaigatgsfmallagisatsWSYTGMASICYMTGEIKNPGKTMPRALIGSCLLVLV 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 238 GYVLTNVAYFTTISAEELLQSS---AVAVTFSERLLGKFSLAVPIFVALSCFGSMNGGVFAVSRLFYVASREGHLPEILS 314
Cdd:PRK11357  242 LYTLLALVISGLMPFDKLANSEtpiSDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFFKCFG 321

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 315 MIHVHKHTPLPAVIVLHPLTMIMLFSGDLYSLLNFLSFARWLFMGLAVAGLIYLRyKRPDMHRPFKVPLF--IPALFSFT 392
Cdd:PRK11357  322 HVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWCR-KRDDYKPLWRTPAFglMTTLAIAS 400

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|..
gi 1958750522 393 CLFMVVLSLYSDPFSTGV-GFLITLTGVPAYYLfivWDKKPK 433
Cdd:PRK11357  401 SLILVASTFVWAPIPGLIcAVIVIATGLPAYAF---WAKRSR 439
AA_permease pfam00324
Amino acid permease;
50-438 1.76e-13

Amino acid permease;


Pssm-ID: 366028 [Multi-domain]  Cd Length: 467  Bit Score: 71.97  E-value: 1.76e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522  50 VSIIIGTVIGSGIFISPKGILQNTGSVGmSLVFWSACGVLSLFGALSYAELGTSIKKSGGHYTYILEVFGPLLAFVRVW- 128
Cdd:pfam00324   3 QMIALGGVIGTGLFVGSGSVLGQAGPAG-ALLGYLISGVVIFLVMLSLGEISTNGPVSGGFYTYASRFLGPSLGFATGWn 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 129 ---VELLVIRPGATAVISL-----------------------------------AFGRYILEPFFIQCEIPELAIKLVTA 170
Cdd:pfam00324  82 ywlSWITVLALELTAASILiqfwelvpdipylwvwgavflvlltiinlvgvkwyGEAEFWFALIKIIAIIGFIIVGIILL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 171 VGIRQTHHFKDAFSGRDTNLMGLPLAFYYG--------MYAYAGWFYLNFITEEVDNPEKTIPLAICISMAIITVGYVLT 242
Cdd:pfam00324 162 SGGNPNDGAIFRYLGDNGGKNNFPPGFGKGfisvfviaFFAFTGIELVGIAAGEVKNPEKSIPKAILQVIWRITIFYILS 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 243 NVAYFTTI--SAEELLQSSAVAVT-----FSERLLGKFSLAVPIFVALSCFGSMNGGVFAVSRLFYVASREGHLPEILsM 315
Cdd:pfam00324 242 LLAIGLLVpwNDPGLLNDSASAASpfvifFKFLGISGLAPLINAVILTAALSAANSSLYSGSRMLYSLARDGLAPKFL-K 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 316 IHVHKHTPLPAVIVlhplTMIMLFSGDLYSLLNFLSFARWLFMGLAVAGLI--------YLRYKRPDM-----------H 376
Cdd:pfam00324 321 KVDKRGVPLRAILV----SMVISLLALLLASLNPAIVFNFLLAISGLSGLIvwglislsHLRFRKAFKyqgrsidelpfK 396

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 377 RPFKVPLFIPALFSFTCLFMVVLSLYSDPFSTGVGFLITLTGVPAY--------YLFIVWDKKPKWFRRL 438
Cdd:pfam00324 397 APLGPLGVILGLAAIIIILIIQFLYAFLPVPGGPKNWGAGSFAAAYlivllfliILIGVKLHVKNWKPQL 466
PRK10644 PRK10644
arginine/agmatine antiporter;
42-340 1.23e-06

arginine/agmatine antiporter;


Pssm-ID: 182613 [Multi-domain]  Cd Length: 445  Bit Score: 50.56  E-value: 1.23e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522  42 KKITLLRGVSIIIGTVIGSGIFISPKGiLQNTGSVGMSLVFWSACGVLSLfgALSYAELGTSIKKSGGHYTYILEVFGPL 121
Cdd:PRK10644    8 HKVGLIPVTLMVAGNIMGSGVFLLPAN-LASTGGIAIYGWLVTIIGALGL--SMVYAKMSSLDPSPGGSYAYARRCFGPF 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 122 LAF---VRVWVELlVIRPGATAVISLAFGRYIL----EP--FFIQCEIPELAIKLVTAVGirqtHHFKDAFSGRDTNLMG 192
Cdd:PRK10644   85 LGYqtnVLYWLAC-WIGNIAMVVIGVGYLSYFFpilkDPlvLTITCVVVLWIFVLLNIVG----PKMITRVQAVATVLAL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 193 LPLAfyyGMyAYAGWFYLN-----------------------------FITEE--------VDNPEKTIPLAICISMAII 235
Cdd:PRK10644  160 IPIV---GI-AVFGWFWFRgetymaawnvsglgtfgaiqstlnvtlwsFIGVEsasvaagvVKNPKRNVPIATIGGVLIA 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 236 TVGYVLTNVAYFTTISAEELLQSSAVAVTFSERLLGKFSLA-VPIFVALSCFGSMNGGVFAVSRLFYVASREGHLPEILS 314
Cdd:PRK10644  236 AVCYVLSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAiVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFA 315

                         330       340
                  ....*....|....*....|....*.
gi 1958750522 315 MIHvHKHTPLPAVIVLHPLTMIMLFS 340
Cdd:PRK10644  316 RVN-KAGTPVAGLLIVGVLMTIFQLS 340
PRK11021 PRK11021
putative transporter; Provisional
 44-330 3.93e-05

putative transporter; Provisional


Pssm-ID: 236823 [Multi-domain]  Cd Length: 410  Bit Score: 45.67  E-value: 3.93e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522  44 ITLLRGVSIIIGTVIGSGIFISPKGILQNTGsvGMSLVFWSACGVLSLFGALSYAELGTSIKKSGGHYTYILEVFGPLLA 123
Cdd:PRK11021    1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAG--NNSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLG 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 124 FVRVWVELLVIRPGATAVISLAFGryilepfFIQCEIPE-----LAIKLVT-----AVGIRQTHH--------------- 178
Cdd:PRK11021   79 RVTGWLFLSVIPVGLPAALQIAAG-------FGQALFGWsswqlLLAELLTlallwLLNLRGASSsanlqtviallival 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 179 -----FKDAFSGRDTNLMGLPLAFYYGMYAYAGWFYLNFI--------TEEVDNPEKTIPLAICISMAIITVGYVLTNVA 245
Cdd:PRK11021  152 vvaiwWAGDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVgieafahlASEFKNPERDFPRALMIGLLLAGLVYWACTVV 231

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 246 YFTTISAEELLQSSAVAVTFSERLLGKFSLAV-PIFVALSCFGSMNGGVFAVSRLFYVASREGHLPEILSMIHVHkHTPL 324
Cdd:PRK11021  232 VLHFPAYGDKQAAAASLPGIFVQLFGGYALWViCVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLARLSAR-GVPV 310


                  ....*.
gi 1958750522 325 PAVIVL 330
Cdd:PRK11021  311 NALNAV 316
potE PRK10655
putrescine transporter; Provisional
 214-395 8.00e-05

putrescine transporter; Provisional


Pssm-ID: 182622  Cd Length: 438  Bit Score: 45.02  E-value: 8.00e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 214 TEEVDNPEKTIPLAICISMAIITVGYVL-TNVAyFTTISAEELLQSSA-VAVTFSERL---LGKFSLAVPIfvaLSCFGS 288
Cdd:PRK10655  212 SDAVENPERNVPIAVLGGTLGAAVIYIVsTNVI-AGIVPNMELANSTApFGLAFAQMFnptVGKIVMALMV---MSCCGS 287

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 289 MNGGVFAVSRLFYVASREGHLPEILSMIhVHKHTPLPAVI---VLHPLTMIMLFSGDLYSLLNFLsfarwlfMGLAV--- 362
Cdd:PRK10655  288 LLGWQFTIAQVFKSSADEGYFPKIFSRV-TKVDAPVQGMLiivVIQSLLSLMTISPSLNSQFNVL-------VNLAVvtn 359

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1958750522 363 --------AGLIYLRYKR---PDMHRPFKVPLFIPALFSFTCLF 395
Cdd:PRK10655  360 iipyilsmAALVIIQKVAnvpPSKAKVANFIAFVGALYSFYALY 403
PRK15238 PRK15238
inner membrane transporter YjeM; Provisional
 199-241 9.43e-05

inner membrane transporter YjeM; Provisional


Pssm-ID: 237929 [Multi-domain]  Cd Length: 496  Bit Score: 44.55  E-value: 9.43e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1958750522 199 YGMYAYAGWFYLNFITEEVDNPEKTIPLAICISMAIITVGYVL 241
Cdd:PRK15238  219 FAIFAYGGIEAVGGLVDKTENPEKNFPKGIIIAAIVISIGYSL 261
PRK10238 PRK10238
aromatic amino acid transporter AroP;
192-399 2.16e-03

aromatic amino acid transporter AroP;


Pssm-ID: 182324 [Multi-domain]  Cd Length: 456  Bit Score: 40.32  E-value: 2.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 192 GLPLAFYYGMYAYAGWFYLNFITEEVDNPEKTIPLA---ICISMAIITVGY--VLTNVAYFTTISAEellqSSAVAVTFS 266
Cdd:PRK10238  201 GLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKAtnqVIYRILIFYIGSlaVLLSLMPWTRVTAD----TSPFVLIFH 276

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 267 ERLLGKFSLAVPIFVALSCFGSMNGGVFAVSRLFYVASREGHLPEILSMIHvHKHTPLPAVIVLHPLTMIMLfsgdlysL 346
Cdd:PRK10238  277 ELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVD-KRGVPVNTILVSALVTALCV-------L 348

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958750522 347 LNFLS--FARWLFMGLAVAGLI---------YLRYKRPDMHRPFKV---PLFIPALFSFTCLFMVVL 399
Cdd:PRK10238  349 INYLApeSAFGLLMALVVSALVinwamislaHMKFRRAKQEQGVVTrfpALLYPLGNWICLLFMAAV 415
2A0310 TIGR00913
amino acid permease (yeast); [Transport and binding proteins, Amino acids, peptides and amines]
 52-329 2.47e-03

amino acid permease (yeast); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273334  Cd Length: 478  Bit Score: 40.34  E-value: 2.47e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522  52 IIIGTVIGSGIFISPKGILQNTGSVGMsLVFWSACGVLSLFGALSYAELGTSIKKSGGHYT-YILEVFGPLLAFVRVWVE 130
Cdd:TIGR00913  12 IALGGTIGTGLLVGSGTALATGGPAGL-LIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFAtYASRFVDPAFGFAVGWNY 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 131 LLV----------------------IRPGATAVISLAFGRYI----------LEPFFIQCEIPELAIKLVTA-------- 170
Cdd:TIGR00913  91 WLQwlivlplelvtasmtiqywtdkVNPAVWIAIFYVFIVIInlfgvkgygeAEFWFSSIKILAIIGFIILSiilncggg 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 171 -----VGIRQTHHFKdAFSGRDT--NLMGLPLAFYYGMYAYAGWFYLNFITEEVDNPEKTIPLAICISMAIITVGYVLT- 242
Cdd:TIGR00913 171 pnhgyIGFRYWHDPG-AFAGGTIggRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKSIPRAAKRTFWRILVFYILTl 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 243 -----NVAY----FTTISAEELLQSSAVAVTFSERLLGKFSLAVPIFVALSCFGSMNGGVFAVSRLFYVASREGHLPEIL 313
Cdd:TIGR00913 250 fligfLVPYndprLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVILISVLSAANSSLYASSRTLYALAHQGLAPKIF 329

                         330
                  ....*....|....*.
gi 1958750522 314 SMIHvHKHTPLPAVIV 329
Cdd:TIGR00913 330 AYVD-RRGVPYVAVIV 344
2A0304 TIGR00907
amino acid permease (GABA permease); [Transport and binding proteins, Amino acids, peptides ...
 213-327 4.69e-03

amino acid permease (GABA permease); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273331 [Multi-domain]  Cd Length: 482  Bit Score: 39.34  E-value: 4.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 213 ITEEVDNPEKTIPLAICISMAI-ITVGYVLTNVAYFTTISAEELLQSSAVAVTFSERLLGKFSLAVPIFVALSCFGSMNG 291
Cdd:TIGR00907 239 MAEEIENPEVVGPRAIIGAVAIgIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLLCLILVTSFF 318

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1958750522 292 ----GVFAVSRLFYVASREGHLP--EILSMIHVHKHTPLPAV 327
Cdd:TIGR00907 319 caitCMTANSRMIYAFSRDGGLPfsPLWSRVNPRTQVPLNAV 360
cadB PRK10435
cadaverine/lysine antiporter;
42-312 8.76e-03

cadaverine/lysine antiporter;


Pssm-ID: 182458  Cd Length: 435  Bit Score: 38.19  E-value: 8.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522  42 KKITLLRGVSIIIGTVIGSGIFISPKgilqNTGSVGmSLVFWSacGVLSLFGALS----YAELGTSIKKSGGHYTYILEV 117
Cdd:PRK10435    5 KKIGLFACTGVVAGNMMGSGIALLPA----NLASIG-SIAIWG--WIISIIGAMSlayvYARLATKNPQQGGPIAYAGEI 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 118 ---FG---PLLAFVRVWVELLVIrpGATAVISLAFGRYILE---PFFIQC-------------------EIPELAIKL-- 167
Cdd:PRK10435   78 spaFGfqtGVLYYHANWIGNLAI--GITAVSYLSTFFPVLNdpiPAGIACiaivwvftfvnmlggtwvsRLTTIGLVLvl 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750522 168 --VTAVGIRQTHHFKDAFSGRD------TNLMGLPLAFYYGMYAYAGWFYLNFITEEVDNPEKTIPLAICISMAIITVGY 239
Cdd:PRK10435  156 ipVVGTAIVGWHWFDAATYAANwntsdtTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGIIY 235

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958750522 240 VLTNVAYFTTISAEELLQSSAVAVTFSERLLGKFSLA-VPIFVALSCFGSMNGGVFAVSRLFYVASREGHLPEI 312
Cdd:PRK10435  236 IAATQVISGMFPASVMAASGAPFAISASTILGNWAAPlVSAFTAFACLTSLGSWMMLVGQAGVRAANDGNFPKV 309
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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