NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1958750738|ref|XP_038958270|]
View 

large ribosomal subunit protein bL9m isoform X2 [Rattus norvegicus]

Protein Classification

bL9 family ribosomal protein( domain architecture ID 10472659)

bL9 family ribosomal protein such as Mus musculus 39S ribosomal protein L9 which is a component of the mitochondrial ribosome large subunit (39S)

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L9_N pfam01281
Ribosomal protein L9, N-terminal domain;
92-137 7.83e-16

Ribosomal protein L9, N-terminal domain;


:

Pssm-ID: 460146  Cd Length: 47  Bit Score: 67.40  E-value: 7.83e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1958750738  92 ELILTQSVDEIGVRGDLVSVKKSVGRNKLLPQGLAVYASPENRKLF 137
Cdd:pfam01281   2 KVILLEDVKGLGKKGDVVEVKDGYARNFLIPRGLAVYATPENLKEL 47
 
Name Accession Description Interval E-value
Ribosomal_L9_N pfam01281
Ribosomal protein L9, N-terminal domain;
92-137 7.83e-16

Ribosomal protein L9, N-terminal domain;


Pssm-ID: 460146  Cd Length: 47  Bit Score: 67.40  E-value: 7.83e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1958750738  92 ELILTQSVDEIGVRGDLVSVKKSVGRNKLLPQGLAVYASPENRKLF 137
Cdd:pfam01281   2 KVILLEDVKGLGKKGDVVEVKDGYARNFLIPRGLAVYATPENLKEL 47
RplI COG0359
Ribosomal protein L9 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L9 ...
 92-162 1.18e-13

Ribosomal protein L9 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L9 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440128  Cd Length: 147  Bit Score: 64.65  E-value: 1.18e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958750738  92 ELILTQSVDEIGVRGDLVSVKKSVGRNKLLPQGLAVYASPENRKLFEEEKLLRQEgKLEKIQTKAGEAKQQ 162
Cdd:COG0359     2 KVILLEDVKGLGKKGDVVEVKDGYARNYLIPQGLAVEATKGNLKQLEARRAALEA-KEAEELAEAEALAEK 71
L9 TIGR00158
ribosomal protein L9; Ribosomal protein L9 appears to be universal in, but restricted to, ...
 91-178 1.54e-09

ribosomal protein L9; Ribosomal protein L9 appears to be universal in, but restricted to, eubacteria and chloroplast. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 129262  Cd Length: 148  Bit Score: 53.93  E-value: 1.54e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750738  91 LELILTQSVDEIGVRGDLVSVKKSVGRNKLLPQGLAVYASPENRKLFeeekllrqEGKLEKIQTKAGEAKQQDKNPYEVL 170
Cdd:TIGR00158   1 MKVILLEDVANLGKRGDVVEVKDGYARNFLIPKGLAVPATKKNIEFF--------EARRKKLEEKLAANKAAAARLKEVL 72


                  ....*...
gi 1958750738 171 NTAFFHIS 178
Cdd:TIGR00158  73 ELGTLTIS 80
rpl9 CHL00160
ribosomal protein L9; Provisional
 88-161 1.91e-04

ribosomal protein L9; Provisional


Pssm-ID: 214378  Cd Length: 153  Bit Score: 39.76  E-value: 1.91e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958750738  88 KDHLELILTQSVDEIGVRGDLVSVKKSVGRNKLLPQGLAVYASPENRKLFEEEKLLRQEgKLEKIQTKAGEAKQ 161
Cdd:CHL00160    3 KKKIQVILKENIQKLGKSGTVIKVKSGYARNYLIPNKMAKVATQGSLKQQKMYQKILDL-KLKEAKEKCLKVKQ 75
 
Name Accession Description Interval E-value
Ribosomal_L9_N pfam01281
Ribosomal protein L9, N-terminal domain;
92-137 7.83e-16

Ribosomal protein L9, N-terminal domain;


Pssm-ID: 460146  Cd Length: 47  Bit Score: 67.40  E-value: 7.83e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1958750738  92 ELILTQSVDEIGVRGDLVSVKKSVGRNKLLPQGLAVYASPENRKLF 137
Cdd:pfam01281   2 KVILLEDVKGLGKKGDVVEVKDGYARNFLIPRGLAVYATPENLKEL 47
RplI COG0359
Ribosomal protein L9 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L9 ...
 92-162 1.18e-13

Ribosomal protein L9 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L9 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440128  Cd Length: 147  Bit Score: 64.65  E-value: 1.18e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958750738  92 ELILTQSVDEIGVRGDLVSVKKSVGRNKLLPQGLAVYASPENRKLFEEEKLLRQEgKLEKIQTKAGEAKQQ 162
Cdd:COG0359     2 KVILLEDVKGLGKKGDVVEVKDGYARNYLIPQGLAVEATKGNLKQLEARRAALEA-KEAEELAEAEALAEK 71
L9 TIGR00158
ribosomal protein L9; Ribosomal protein L9 appears to be universal in, but restricted to, ...
 91-178 1.54e-09

ribosomal protein L9; Ribosomal protein L9 appears to be universal in, but restricted to, eubacteria and chloroplast. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 129262  Cd Length: 148  Bit Score: 53.93  E-value: 1.54e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958750738  91 LELILTQSVDEIGVRGDLVSVKKSVGRNKLLPQGLAVYASPENRKLFeeekllrqEGKLEKIQTKAGEAKQQDKNPYEVL 170
Cdd:TIGR00158   1 MKVILLEDVANLGKRGDVVEVKDGYARNFLIPKGLAVPATKKNIEFF--------EARRKKLEEKLAANKAAAARLKEVL 72


                  ....*...
gi 1958750738 171 NTAFFHIS 178
Cdd:TIGR00158  73 ELGTLTIS 80
rpl9 CHL00160
ribosomal protein L9; Provisional
 88-161 1.91e-04

ribosomal protein L9; Provisional


Pssm-ID: 214378  Cd Length: 153  Bit Score: 39.76  E-value: 1.91e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958750738  88 KDHLELILTQSVDEIGVRGDLVSVKKSVGRNKLLPQGLAVYASPENRKLFEEEKLLRQEgKLEKIQTKAGEAKQ 161
Cdd:CHL00160    3 KKKIQVILKENIQKLGKSGTVIKVKSGYARNYLIPNKMAKVATQGSLKQQKMYQKILDL-KLKEAKEKCLKVKQ 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH