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Conserved domains on  [gi|1958759744|ref|XP_038960153|]
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prolyl endopeptidase FAP isoform X1 [Rattus norvegicus]

Protein Classification

S9 family peptidase( domain architecture ID 12012129)

peptidase S9 family protein, an oligopeptidase which may cleave the prolyl bond of short peptides, similar to oligopeptidase B, which cleaves on the C-terminal side of lysyl and argininyl residues

EC:  3.4.-.-
Gene Ontology:  GO:0008236|GO:0006508
MEROPS:  S9
SCOP:  3000102

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DPPIV_N pfam00930
Dipeptidyl peptidase IV (DPP IV) N-terminal region; This family is an alignment of the region ...
106-473 7.27e-124

Dipeptidyl peptidase IV (DPP IV) N-terminal region; This family is an alignment of the region to the N-terminal side of the active site. The Prosite motif does not correspond to this Pfam entry.


:

Pssm-ID: 395744 [Multi-domain]  Cd Length: 352  Bit Score: 373.58  E-value: 7.27e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744 106 SPDRQFIYLESDYSKLWRYSYTATYYIYDLQNGEFVRGYELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITY 185
Cdd:pfam00930   1 SPDGKYLLLATNYTKNWRHSYTADYYIYDLETNRVEPLPPGEGKIQDAKWSPDGDRLAFVRDNNLYVRELATGKEIQITS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744 186 TGrENRIFNGIPDWVYEEEMLATKYALWWSPDGKYLAYVEFNDSDIPIIAYSYYGDGQ-YPRTINIPYPKAGAKNPIVRV 264
Cdd:pfam00930  81 DG-SDGIFNGVADWVYEEEVLGSNSAVWWSPDGSRLAFLRFDESEVPIITLPYYTDEGpGPEVREIKYPKAGAPNPTVEL 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744 265 FIVDTIYPHHVgpiEVPVPEMIASSDYYFTWLTWVTNERVCLQWLKRVQNVSVLSICDFREDWHAWDCpknqehiEESRT 344
Cdd:pfam00930 160 FVYDLASGKTV---EVVPPDDLSDADYYITRVKWVPDGKLLVQWLNRDQNRLKVVLCDAETGRTVVIL-------EETSD 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744 345 GWAggFFVSTPAFSQDAASYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWE--AIYIFRVTQDSLFYSSNefEGYPGRR 422
Cdd:pfam00930 230 GWV--ELHQDPHFIKRDGSGFLWISERDGYNHLYLYDLDGKSPIQLTSGNWEvtSILGVDETRDLVYFTAT--EDSPTER 305
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1958759744 423 NIYRISIgNSPPSKKCVTCHLRKErcqYYTASFSYKAKYYALICYGPGLPI 473
Cdd:pfam00930 306 HLYSVSL-DSGGEPTCLTDDSGDH---DYSASFSPNGSYYVLTYSGPDTPP 352
Peptidase_S9 pfam00326
Prolyl oligopeptidase family;
553-728 9.02e-59

Prolyl oligopeptidase family;


:

Pssm-ID: 459761 [Multi-domain]  Cd Length: 213  Bit Score: 197.84  E-value: 9.02e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744 553 FSVNWITYLASKEGIVVALVDGRGTAFQGDKFLHAVYRKLGVYEVEDQLTAVRKFIEMGFIDEGRIAIWGWSYGGYVSSL 632
Cdd:pfam00326   1 PSFSWNAQLLADRGYVVAIANGRGSGGYGEAFHDAGKGDLGQNEFDDFIAAAEYLIEQGYTDPDRLAIWGGSYGGYLTGA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744 633 ALASGTGLFKCGIAVAPVSSWEYYASI----YTERFMGLPTKDDNLEHYK-NSTVMARAEYFRNVDYLLIHGTADDNVHF 707
Cdd:pfam00326  81 ALNQRPDLFKAAVAHVPVVDWLAYMSDtslpFTERYMEWGNPWDNEEGYDyLSPYSPADNVKVYPPLLLIHGLLDDRVPP 160
                         170       180
                  ....*....|....*....|.
gi 1958759744 708 QNSAQIAKALVNAQVDFQAMV 728
Cdd:pfam00326 161 WQSLKLVAALQRKGVPFLLLI 181
 
Name Accession Description Interval E-value
DPPIV_N pfam00930
Dipeptidyl peptidase IV (DPP IV) N-terminal region; This family is an alignment of the region ...
106-473 7.27e-124

Dipeptidyl peptidase IV (DPP IV) N-terminal region; This family is an alignment of the region to the N-terminal side of the active site. The Prosite motif does not correspond to this Pfam entry.


Pssm-ID: 395744 [Multi-domain]  Cd Length: 352  Bit Score: 373.58  E-value: 7.27e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744 106 SPDRQFIYLESDYSKLWRYSYTATYYIYDLQNGEFVRGYELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITY 185
Cdd:pfam00930   1 SPDGKYLLLATNYTKNWRHSYTADYYIYDLETNRVEPLPPGEGKIQDAKWSPDGDRLAFVRDNNLYVRELATGKEIQITS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744 186 TGrENRIFNGIPDWVYEEEMLATKYALWWSPDGKYLAYVEFNDSDIPIIAYSYYGDGQ-YPRTINIPYPKAGAKNPIVRV 264
Cdd:pfam00930  81 DG-SDGIFNGVADWVYEEEVLGSNSAVWWSPDGSRLAFLRFDESEVPIITLPYYTDEGpGPEVREIKYPKAGAPNPTVEL 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744 265 FIVDTIYPHHVgpiEVPVPEMIASSDYYFTWLTWVTNERVCLQWLKRVQNVSVLSICDFREDWHAWDCpknqehiEESRT 344
Cdd:pfam00930 160 FVYDLASGKTV---EVVPPDDLSDADYYITRVKWVPDGKLLVQWLNRDQNRLKVVLCDAETGRTVVIL-------EETSD 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744 345 GWAggFFVSTPAFSQDAASYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWE--AIYIFRVTQDSLFYSSNefEGYPGRR 422
Cdd:pfam00930 230 GWV--ELHQDPHFIKRDGSGFLWISERDGYNHLYLYDLDGKSPIQLTSGNWEvtSILGVDETRDLVYFTAT--EDSPTER 305
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1958759744 423 NIYRISIgNSPPSKKCVTCHLRKErcqYYTASFSYKAKYYALICYGPGLPI 473
Cdd:pfam00930 306 HLYSVSL-DSGGEPTCLTDDSGDH---DYSASFSPNGSYYVLTYSGPDTPP 352
Peptidase_S9 pfam00326
Prolyl oligopeptidase family;
553-728 9.02e-59

Prolyl oligopeptidase family;


Pssm-ID: 459761 [Multi-domain]  Cd Length: 213  Bit Score: 197.84  E-value: 9.02e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744 553 FSVNWITYLASKEGIVVALVDGRGTAFQGDKFLHAVYRKLGVYEVEDQLTAVRKFIEMGFIDEGRIAIWGWSYGGYVSSL 632
Cdd:pfam00326   1 PSFSWNAQLLADRGYVVAIANGRGSGGYGEAFHDAGKGDLGQNEFDDFIAAAEYLIEQGYTDPDRLAIWGGSYGGYLTGA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744 633 ALASGTGLFKCGIAVAPVSSWEYYASI----YTERFMGLPTKDDNLEHYK-NSTVMARAEYFRNVDYLLIHGTADDNVHF 707
Cdd:pfam00326  81 ALNQRPDLFKAAVAHVPVVDWLAYMSDtslpFTERYMEWGNPWDNEEGYDyLSPYSPADNVKVYPPLLLIHGLLDDRVPP 160
                         170       180
                  ....*....|....*....|.
gi 1958759744 708 QNSAQIAKALVNAQVDFQAMV 728
Cdd:pfam00326 161 WQSLKLVAALQRKGVPFLLLI 181
DAP2 COG1506
Dipeptidyl aminopeptidase/acylaminoacyl peptidase [Amino acid transport and metabolism];
513-730 6.68e-44

Dipeptidyl aminopeptidase/acylaminoacyl peptidase [Amino acid transport and metabolism];


Pssm-ID: 441115 [Multi-domain]  Cd Length: 234  Bit Score: 157.87  E-value: 6.68e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744 513 DGGMTFWYKMILPPQfdrSKKYPLLIQVYGGPCSQSVksvFSVNWITYLASKeGIVVALVDGRGtafQGDKFlhavyRKL 592
Cdd:COG1506     5 ADGTTLPGWLYLPAD---GKKYPVVVYVHGGPGSRDD---SFLPLAQALASR-GYAVLAPDYRG---YGESA-----GDW 69
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744 593 GVYEVEDQLTAVRKFIEMGFIDEGRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAPVSSWEYYA---SIYTERFMGLPt 669
Cdd:COG1506    70 GGDEVDDVLAAIDYLAARPYVDPDRIGIYGHSYGGYMALLAAARHPDRFKAAVALAGVSDLRSYYgttREYTERLMGGP- 148
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958759744 670 kDDNLEHYKNSTVMARAEYFRnVDYLLIHGTADDNVHFQNSAQIAKALVNAQVDFQAMVHD 730
Cdd:COG1506   149 -WEDPEAYAARSPLAYADKLK-TPLLLIHGEADDRVPPEQAERLYEALKKAGKPVELLVYP 207
TolB COG0823
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ...
131-248 9.94e-06

Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440585 [Multi-domain]  Cd Length: 158  Bit Score: 46.20  E-value: 9.94e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744 131 YIYDLQNGEFVRGYELPRPIQYLCWSPVGSKLAYV----YQNNIYLKQRPGDPPFQITYTGRENrifngipdwvyeeeml 206
Cdd:COG0823    14 YVVDLDGGEPRRLTNSPGIDTSPAWSPDGRRIAFTsdrgGGPQIYVVDADGGEPRRLTFGGGYN---------------- 77
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1958759744 207 atkYALWWSPDGKYLAYVEFNDSDIPIIAYSYygDGQYPRTI 248
Cdd:COG0823    78 ---ASPSWSPDGKRLAFVSRSDGRFDIYVLDL--DGGAPRRL 114
 
Name Accession Description Interval E-value
DPPIV_N pfam00930
Dipeptidyl peptidase IV (DPP IV) N-terminal region; This family is an alignment of the region ...
106-473 7.27e-124

Dipeptidyl peptidase IV (DPP IV) N-terminal region; This family is an alignment of the region to the N-terminal side of the active site. The Prosite motif does not correspond to this Pfam entry.


Pssm-ID: 395744 [Multi-domain]  Cd Length: 352  Bit Score: 373.58  E-value: 7.27e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744 106 SPDRQFIYLESDYSKLWRYSYTATYYIYDLQNGEFVRGYELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITY 185
Cdd:pfam00930   1 SPDGKYLLLATNYTKNWRHSYTADYYIYDLETNRVEPLPPGEGKIQDAKWSPDGDRLAFVRDNNLYVRELATGKEIQITS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744 186 TGrENRIFNGIPDWVYEEEMLATKYALWWSPDGKYLAYVEFNDSDIPIIAYSYYGDGQ-YPRTINIPYPKAGAKNPIVRV 264
Cdd:pfam00930  81 DG-SDGIFNGVADWVYEEEVLGSNSAVWWSPDGSRLAFLRFDESEVPIITLPYYTDEGpGPEVREIKYPKAGAPNPTVEL 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744 265 FIVDTIYPHHVgpiEVPVPEMIASSDYYFTWLTWVTNERVCLQWLKRVQNVSVLSICDFREDWHAWDCpknqehiEESRT 344
Cdd:pfam00930 160 FVYDLASGKTV---EVVPPDDLSDADYYITRVKWVPDGKLLVQWLNRDQNRLKVVLCDAETGRTVVIL-------EETSD 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744 345 GWAggFFVSTPAFSQDAASYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWE--AIYIFRVTQDSLFYSSNefEGYPGRR 422
Cdd:pfam00930 230 GWV--ELHQDPHFIKRDGSGFLWISERDGYNHLYLYDLDGKSPIQLTSGNWEvtSILGVDETRDLVYFTAT--EDSPTER 305
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1958759744 423 NIYRISIgNSPPSKKCVTCHLRKErcqYYTASFSYKAKYYALICYGPGLPI 473
Cdd:pfam00930 306 HLYSVSL-DSGGEPTCLTDDSGDH---DYSASFSPNGSYYVLTYSGPDTPP 352
Peptidase_S9 pfam00326
Prolyl oligopeptidase family;
553-728 9.02e-59

Prolyl oligopeptidase family;


Pssm-ID: 459761 [Multi-domain]  Cd Length: 213  Bit Score: 197.84  E-value: 9.02e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744 553 FSVNWITYLASKEGIVVALVDGRGTAFQGDKFLHAVYRKLGVYEVEDQLTAVRKFIEMGFIDEGRIAIWGWSYGGYVSSL 632
Cdd:pfam00326   1 PSFSWNAQLLADRGYVVAIANGRGSGGYGEAFHDAGKGDLGQNEFDDFIAAAEYLIEQGYTDPDRLAIWGGSYGGYLTGA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744 633 ALASGTGLFKCGIAVAPVSSWEYYASI----YTERFMGLPTKDDNLEHYK-NSTVMARAEYFRNVDYLLIHGTADDNVHF 707
Cdd:pfam00326  81 ALNQRPDLFKAAVAHVPVVDWLAYMSDtslpFTERYMEWGNPWDNEEGYDyLSPYSPADNVKVYPPLLLIHGLLDDRVPP 160
                         170       180
                  ....*....|....*....|.
gi 1958759744 708 QNSAQIAKALVNAQVDFQAMV 728
Cdd:pfam00326 161 WQSLKLVAALQRKGVPFLLLI 181
DAP2 COG1506
Dipeptidyl aminopeptidase/acylaminoacyl peptidase [Amino acid transport and metabolism];
513-730 6.68e-44

Dipeptidyl aminopeptidase/acylaminoacyl peptidase [Amino acid transport and metabolism];


Pssm-ID: 441115 [Multi-domain]  Cd Length: 234  Bit Score: 157.87  E-value: 6.68e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744 513 DGGMTFWYKMILPPQfdrSKKYPLLIQVYGGPCSQSVksvFSVNWITYLASKeGIVVALVDGRGtafQGDKFlhavyRKL 592
Cdd:COG1506     5 ADGTTLPGWLYLPAD---GKKYPVVVYVHGGPGSRDD---SFLPLAQALASR-GYAVLAPDYRG---YGESA-----GDW 69
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744 593 GVYEVEDQLTAVRKFIEMGFIDEGRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAPVSSWEYYA---SIYTERFMGLPt 669
Cdd:COG1506    70 GGDEVDDVLAAIDYLAARPYVDPDRIGIYGHSYGGYMALLAAARHPDRFKAAVALAGVSDLRSYYgttREYTERLMGGP- 148
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958759744 670 kDDNLEHYKNSTVMARAEYFRnVDYLLIHGTADDNVHFQNSAQIAKALVNAQVDFQAMVHD 730
Cdd:COG1506   149 -WEDPEAYAARSPLAYADKLK-TPLLLIHGEADDRVPPEQAERLYEALKKAGKPVELLVYP 207
DLH COG0412
Dienelactone hydrolase [Secondary metabolites biosynthesis, transport and catabolism];
561-732 2.95e-08

Dienelactone hydrolase [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440181 [Multi-domain]  Cd Length: 226  Bit Score: 54.97  E-value: 2.95e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744 561 LAsKEGIVVALVD--GRGTAFQGDKFLHAVYRKLGVYEVEDQLTAVRKFI-EMGFIDEGRIAIWGWSYGGYVsSLALASG 637
Cdd:COG0412    52 LA-AAGYVVLAPDlyGRGGPGDDPDEARALMGALDPELLAADLRAALDWLkAQPEVDAGRVGVVGFCFGGGL-ALLAAAR 129
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744 638 TGLFKCGIAvapvssweyyasiyterFMGLPTKDDNLEHYKNSTvmaraeyfrnVDYLLIHGTADDNVHFQNSAQIAKAL 717
Cdd:COG0412   130 GPDLAAAVS-----------------FYGGLPADDLLDLAARIK----------APVLLLYGEKDPLVPPEQVAALEAAL 182
                         170
                  ....*....|....*
gi 1958759744 718 VNAQVDFQAMVHDPA 732
Cdd:COG0412   183 AAAGVDVELHVYPGA 197
FrsA COG1073
Fermentation-respiration switch esterase FrsA, DUF1100 family [Signal transduction mechanisms]; ...
519-716 6.57e-07

Fermentation-respiration switch esterase FrsA, DUF1100 family [Signal transduction mechanisms];


Pssm-ID: 440691 [Multi-domain]  Cd Length: 253  Bit Score: 51.45  E-value: 6.57e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744 519 WYkmiLPPqfDRSKKYPLLiqVYGGPCSqSVKSvFSVNWITYLAsKEGIVVALVDGRGT-AFQGDkflhavYRKLGVYEV 597
Cdd:COG1073    27 LY---LPA--GASKKYPAV--VVAHGNG-GVKE-QRALYAQRLA-ELGFNVLAFDYRGYgESEGE------PREEGSPER 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744 598 EDQLTAVRKFIEMGFIDEGRIAIWGWSYGGYVSSLALASGTGlFKCGIAVAPVSSWEYYASIYTERFMGLPTKDDNLeHY 677
Cdd:COG1073    91 RDARAAVDYLRTLPGVDPERIGLLGISLGGGYALNAAATDPR-VKAVILDSPFTSLEDLAAQRAKEARGAYLPGVPY-LP 168
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1958759744 678 KNSTVMARAEYFRNVDY--------LLIHGTADDNVHFQNSAQIAKA 716
Cdd:COG1073   169 NVRLASLLNDEFDPLAKiekisrplLFIHGEKDEAVPFYMSEDLYEA 215
LpqC COG3509
Acetyl xylan esterase AxeA and related esterases, LpqC family [Carbohydrate transport and ...
504-720 8.40e-07

Acetyl xylan esterase AxeA and related esterases, LpqC family [Carbohydrate transport and metabolism];


Pssm-ID: 442732 [Multi-domain]  Cd Length: 284  Bit Score: 51.16  E-value: 8.40e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744 504 PAVEIKKLEDGGMTFWYKMILPPQFDRSKKYPLLIQVYGgpCSQSVKSVFSV-NWITyLASKEGIVVALVDGRGTAFQG- 581
Cdd:COG3509    23 AGDFERTFTVGGGTRTYRLYVPAGYDGGAPLPLVVALHG--CGGSAADFAAGtGLNA-LADREGFIVVYPEGTGRAPGRc 99
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744 582 -DKFLHAVYRKlGVYEVEDQLTAVRKFIEMGFIDEGRIAIWGWSYGGYVSSLALASGTGLFKcgiAVAPVSsweyyasiy 660
Cdd:COG3509   100 wNWFDGRDQRR-GRDDVAFIAALVDDLAARYGIDPKRVYVTGLSAGGAMAYRLACEYPDVFA---AVAPVA--------- 166
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744 661 terfmGLPTKDDNlehyknstvMARAEYFRNVDYLLIHGTADDNVHFQNSAQIAKALVNA 720
Cdd:COG3509   167 -----GLPYGAAS---------DAACAPGRPVPVLVIHGTADPTVPYAGAEETLAQWAAL 212
TolB COG0823
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ...
131-248 9.94e-06

Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440585 [Multi-domain]  Cd Length: 158  Bit Score: 46.20  E-value: 9.94e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744 131 YIYDLQNGEFVRGYELPRPIQYLCWSPVGSKLAYV----YQNNIYLKQRPGDPPFQITYTGRENrifngipdwvyeeeml 206
Cdd:COG0823    14 YVVDLDGGEPRRLTNSPGIDTSPAWSPDGRRIAFTsdrgGGPQIYVVDADGGEPRRLTFGGGYN---------------- 77
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1958759744 207 atkYALWWSPDGKYLAYVEFNDSDIPIIAYSYygDGQYPRTI 248
Cdd:COG0823    78 ---ASPSWSPDGKRLAFVSRSDGRFDIYVLDL--DGGAPRRL 114
TolB COG0823
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ...
106-224 4.51e-05

Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440585 [Multi-domain]  Cd Length: 158  Bit Score: 44.28  E-value: 4.51e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744 106 SPDRQFIYLESDYSKLWRYsytatyYIYDLQNGEFVRGYELPRPIQYLCWSPVGSKLAYVYQNN----IYLKQRPGDPPF 181
Cdd:COG0823    39 SPDGRRIAFTSDRGGGPQI------YVVDADGGEPRRLTFGGGYNASPSWSPDGKRLAFVSRSDgrfdIYVLDLDGGAPR 112
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1958759744 182 QITYTGREnrifngiPDWvyeeemlatkyalwwSPDGKYLAYV 224
Cdd:COG0823   113 RLTDGPGS-------PSW---------------SPDGRRIVFS 133
Peptidase_S15 pfam02129
X-Pro dipeptidyl-peptidase (S15 family);
529-656 5.40e-05

X-Pro dipeptidyl-peptidase (S15 family);


Pssm-ID: 396621 [Multi-domain]  Cd Length: 264  Bit Score: 45.41  E-value: 5.40e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744 529 DRSKKYPLL--IQVYGGPCSQSVKSVFSVNWITYLASkeGIVVALVDGRGTAF-QGdkflhaVYRKLGVYEVEDQlTAVr 605
Cdd:pfam02129  14 KTGGPVPALltRSPYGARRDGASDLALAHPEWEFAAR--GYAVVYQDVRGTGGsEG------VFTVGGPQEAADG-KDV- 83
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1958759744 606 kfiemgfID--------EGRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAPVSSWEYY 656
Cdd:pfam02129  84 -------IDwlagqpwcNGKVGMTGISYLGTTQLAAAATGPPGLKAIAPESGISDLYDY 135
WD40 COG2319
WD40 repeat [General function prediction only];
71-222 1.79e-03

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 41.44  E-value: 1.79e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744  71 SEDDNIVFYNIETRESYIILSNSTmKSVNATDYglSPDRQFIYLESDYS--KLWrysytatyyiyDLQNGEFVRGYELPR 148
Cdd:COG2319   181 SDDGTVRLWDLATGKLLRTLTGHT-GAVRSVAF--SPDGKLLASGSADGtvRLW-----------DLATGKLLRTLTGHS 246
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958759744 149 -PIQYLCWSPVGSKLAYVYQNN-IYLkqrpgdppFQITyTGRENRIFNGIPDWVYeeemlatkyALWWSPDGKYLA 222
Cdd:COG2319   247 gSVRSVAFSPDGRLLASGSADGtVRL--------WDLA-TGELLRTLTGHSGGVN---------SVAFSPDGKLLA 304
YpfH COG0400
Predicted esterase [General function prediction only];
613-730 1.85e-03

Predicted esterase [General function prediction only];


Pssm-ID: 440169 [Multi-domain]  Cd Length: 200  Bit Score: 40.28  E-value: 1.85e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744 613 IDEGRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAPvssweyyasiyterfmGLPTKDDnlehyknstVMARAEYFRNV 692
Cdd:COG0400    86 IDPERIVLAGFSQGAAMALSLALRRPELLAGVVALSG----------------YLPGEEA---------LPAPEAALAGT 140
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1958759744 693 DYLLIHGTADDNVHFQNSAQIAKALVNAQVDFQAMVHD 730
Cdd:COG0400   141 PVFLAHGTQDPVIPVERAREAAEALEAAGADVTYREYP 178
COG4946 COG4946
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ...
155-225 4.40e-03

Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];


Pssm-ID: 443973 [Multi-domain]  Cd Length: 1072  Bit Score: 40.41  E-value: 4.40e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958759744  155 WSPVGSKLAYVY----QNNIYL-KQRPGDPPFQITytgrenrifngIPDWVYEeemlatkYALWWSPDGKYLAYVE 225
Cdd:COG4946    350 WSPDGKSIAYFSdasgEYELYIaPADGSGEPKQLT-----------LGDLGRV-------FNPVWSPDGKKIAFTD 407
MenH COG0596
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, ...
595-722 4.77e-03

2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold [Coenzyme transport and metabolism, General function prediction only]; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold is part of the Pathway/BioSystem: Menaquinone biosynthesis


Pssm-ID: 440361 [Multi-domain]  Cd Length: 221  Bit Score: 39.21  E-value: 4.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744 595 YEVEDQLTAVRKFIEmgFIDEGRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAPVssWEYYASIYTERFMGLPTKDDNL 674
Cdd:COG0596    70 YTLDDLADDLAALLD--ALGLERVVLVGHSMGGMVALELAARHPERVAGLVLVDEV--LAALAEPLRRPGLAPEALAALL 145
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1958759744 675 EHYKNSTVMARAEYFRnVDYLLIHGTADDNVHFQNSAQIAKALVNAQV 722
Cdd:COG0596   146 RALARTDLRERLARIT-VPTLVIWGEKDPIVPPALARRLAELLPNAEL 192
WD40 COG2319
WD40 repeat [General function prediction only];
71-222 4.90e-03

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 39.89  E-value: 4.90e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958759744  71 SEDDNIVFYNIETRESYIILSNSTmKSVNATDYglSPDRQFIYLESDYS--KLWrysytatyyiyDLQNGEFVRGYELPR 148
Cdd:COG2319    97 SADGTVRLWDLATGLLLRTLTGHT-GAVRSVAF--SPDGKTLASGSADGtvRLW-----------DLATGKLLRTLTGHS 162
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1958759744 149 -PIQYLCWSPVGSKLAYV-YQNNIYLkqrpgdppFQITyTGRENRIFNGIPDWVYeeemlatkyALWWSPDGKYLA 222
Cdd:COG2319   163 gAVTSVAFSPDGKLLASGsDDGTVRL--------WDLA-TGKLLRTLTGHTGAVR---------SVAFSPDGKLLA 220
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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