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Conserved domains on  [gi|1958643564|ref|XP_038960667|]
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putative uncharacterized protein C19orf81 homolog isoform X2 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4732 super family cl24451
Domain of unknown function (DUF4732); This family of proteins is found in eukaryotes. Proteins ...
 40-165 3.92e-35

Domain of unknown function (DUF4732); This family of proteins is found in eukaryotes. Proteins in this family are typically between 107 and 201 amino acids in length.


The actual alignment was detected with superfamily member pfam15876:

Pssm-ID: 374189  Cd Length: 112  Bit Score: 119.40  E-value: 3.92e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958643564  40 VISEYEALDRELPCIRKFSEPPSAQPLCLCMETsedfthlevlqaleaelpgamesgrvssiryenmnvicgtagrrdRW 119
Cdd:pfam15876  32 VIADYEALDRELPCIRKFPTPPASQPLCLCMET---------------------------------------------LW 66

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1958643564 120 LITVTDFQTRSRLLRSGLSLRGVAYPLVRHDDLLLGDYRLHLRRSL 165
Cdd:pfam15876  67 LIAATDFQTRSRLLRSGLSPRGLAHQIVRHDDLLLGDYRLHLRRSL 112
 
Name Accession Description Interval E-value
DUF4732 pfam15876
Domain of unknown function (DUF4732); This family of proteins is found in eukaryotes. Proteins ...
 40-165 3.92e-35

Domain of unknown function (DUF4732); This family of proteins is found in eukaryotes. Proteins in this family are typically between 107 and 201 amino acids in length.


Pssm-ID: 374189  Cd Length: 112  Bit Score: 119.40  E-value: 3.92e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958643564  40 VISEYEALDRELPCIRKFSEPPSAQPLCLCMETsedfthlevlqaleaelpgamesgrvssiryenmnvicgtagrrdRW 119
Cdd:pfam15876  32 VIADYEALDRELPCIRKFPTPPASQPLCLCMET---------------------------------------------LW 66

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1958643564 120 LITVTDFQTRSRLLRSGLSLRGVAYPLVRHDDLLLGDYRLHLRRSL 165
Cdd:pfam15876  67 LIAATDFQTRSRLLRSGLSPRGLAHQIVRHDDLLLGDYRLHLRRSL 112
 
Name Accession Description Interval E-value
DUF4732 pfam15876
Domain of unknown function (DUF4732); This family of proteins is found in eukaryotes. Proteins ...
 40-165 3.92e-35

Domain of unknown function (DUF4732); This family of proteins is found in eukaryotes. Proteins in this family are typically between 107 and 201 amino acids in length.


Pssm-ID: 374189  Cd Length: 112  Bit Score: 119.40  E-value: 3.92e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958643564  40 VISEYEALDRELPCIRKFSEPPSAQPLCLCMETsedfthlevlqaleaelpgamesgrvssiryenmnvicgtagrrdRW 119
Cdd:pfam15876  32 VIADYEALDRELPCIRKFPTPPASQPLCLCMET---------------------------------------------LW 66

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1958643564 120 LITVTDFQTRSRLLRSGLSLRGVAYPLVRHDDLLLGDYRLHLRRSL 165
Cdd:pfam15876  67 LIAATDFQTRSRLLRSGLSPRGLAHQIVRHDDLLLGDYRLHLRRSL 112
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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