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Conserved domains on  [gi|1958771513|ref|XP_038964303|]
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testis-specific gene 13 protein isoform X1 [Rattus norvegicus]

Protein Classification

TSGA13 domain-containing protein( domain architecture ID 10633192)

TSGA13 domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
TSGA13 super family cl20872
Testis-specific gene 13 protein; This family of uncharacterized proteins are found in ...
1-239 2.27e-144

Testis-specific gene 13 protein; This family of uncharacterized proteins are found in chordates. In humans this gene is found to be expressed specifically in the testes.


The actual alignment was detected with superfamily member pfam14994:

Pssm-ID: 464429  Cd Length: 272  Bit Score: 404.24  E-value: 2.27e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958771513   1 MYDTTAQSKFVLKNLRHYTVHPNMAQYYEPLKPSKLQRFLTQRKKTNSFMVKVTEYDQDMTLLLMTNNPPPYSIGQQENN 80
Cdd:pfam14994  35 IFDTVGQSKFVLKNLRHYTVHPNLAQYYEPLKPTALQKFLARNRKIRSFMLKVTEYDQDKTLLIMTNNPPPCPIDQQEKD 114
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958771513  81 GAPIYFPPEFQLKETvYRREPNKNDFLPTMSQKKKLKPVLKPIFPMKRIGDPNFKGQQWFRFSTDKDFKIEGRYSEVHAL 160
Cdd:pfam14994 115 IAPKYFSKELLLKES-YQHKPTENFCLPLMPQKKKLRSGLKPVFPVTLLDDPTSKREQWFRFSTDNDFKSEGKYSKVYAL 193
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958771513 161 RKQKKMYPNLIFAPVDQRETRKQVSMKSADETPTSQVLWEPLTFSKLLEEKPTRSVPGESCFRYGRAQQWVVKNAAVIK 239
Cdd:pfam14994 194 RKQKKMYPQLNFAPVCERDMRKDVSKKSGSDTPTSKMIWEPLTLSSLLEEKPTRTAPGESAFRNGRAQQWIIKNATVIK 272
 
Name Accession Description Interval E-value
TSGA13 pfam14994
Testis-specific gene 13 protein; This family of uncharacterized proteins are found in ...
1-239 2.27e-144

Testis-specific gene 13 protein; This family of uncharacterized proteins are found in chordates. In humans this gene is found to be expressed specifically in the testes.


Pssm-ID: 464429  Cd Length: 272  Bit Score: 404.24  E-value: 2.27e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958771513   1 MYDTTAQSKFVLKNLRHYTVHPNMAQYYEPLKPSKLQRFLTQRKKTNSFMVKVTEYDQDMTLLLMTNNPPPYSIGQQENN 80
Cdd:pfam14994  35 IFDTVGQSKFVLKNLRHYTVHPNLAQYYEPLKPTALQKFLARNRKIRSFMLKVTEYDQDKTLLIMTNNPPPCPIDQQEKD 114
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958771513  81 GAPIYFPPEFQLKETvYRREPNKNDFLPTMSQKKKLKPVLKPIFPMKRIGDPNFKGQQWFRFSTDKDFKIEGRYSEVHAL 160
Cdd:pfam14994 115 IAPKYFSKELLLKES-YQHKPTENFCLPLMPQKKKLRSGLKPVFPVTLLDDPTSKREQWFRFSTDNDFKSEGKYSKVYAL 193
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958771513 161 RKQKKMYPNLIFAPVDQRETRKQVSMKSADETPTSQVLWEPLTFSKLLEEKPTRSVPGESCFRYGRAQQWVVKNAAVIK 239
Cdd:pfam14994 194 RKQKKMYPQLNFAPVCERDMRKDVSKKSGSDTPTSKMIWEPLTLSSLLEEKPTRTAPGESAFRNGRAQQWIIKNATVIK 272
 
Name Accession Description Interval E-value
TSGA13 pfam14994
Testis-specific gene 13 protein; This family of uncharacterized proteins are found in ...
1-239 2.27e-144

Testis-specific gene 13 protein; This family of uncharacterized proteins are found in chordates. In humans this gene is found to be expressed specifically in the testes.


Pssm-ID: 464429  Cd Length: 272  Bit Score: 404.24  E-value: 2.27e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958771513   1 MYDTTAQSKFVLKNLRHYTVHPNMAQYYEPLKPSKLQRFLTQRKKTNSFMVKVTEYDQDMTLLLMTNNPPPYSIGQQENN 80
Cdd:pfam14994  35 IFDTVGQSKFVLKNLRHYTVHPNLAQYYEPLKPTALQKFLARNRKIRSFMLKVTEYDQDKTLLIMTNNPPPCPIDQQEKD 114
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958771513  81 GAPIYFPPEFQLKETvYRREPNKNDFLPTMSQKKKLKPVLKPIFPMKRIGDPNFKGQQWFRFSTDKDFKIEGRYSEVHAL 160
Cdd:pfam14994 115 IAPKYFSKELLLKES-YQHKPTENFCLPLMPQKKKLRSGLKPVFPVTLLDDPTSKREQWFRFSTDNDFKSEGKYSKVYAL 193
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1958771513 161 RKQKKMYPNLIFAPVDQRETRKQVSMKSADETPTSQVLWEPLTFSKLLEEKPTRSVPGESCFRYGRAQQWVVKNAAVIK 239
Cdd:pfam14994 194 RKQKKMYPQLNFAPVCERDMRKDVSKKSGSDTPTSKMIWEPLTLSSLLEEKPTRTAPGESAFRNGRAQQWIIKNATVIK 272
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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