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Conserved domains on  [gi|1958771515|ref|XP_038964304|]
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testis-specific gene 13 protein isoform X2 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TSGA13 super family cl20872
Testis-specific gene 13 protein; This family of uncharacterized proteins are found in ...
 1-124 1.13e-67

Testis-specific gene 13 protein; This family of uncharacterized proteins are found in chordates. In humans this gene is found to be expressed specifically in the testes.


The actual alignment was detected with superfamily member pfam14994:

Pssm-ID: 464429  Cd Length: 272  Bit Score: 205.09  E-value: 1.13e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958771515   1 MGPKKNSKLQE---SGGSKTSIKFEKQLGPDDEEMYDTTAQSKFVLKNLRHYTVHPNMAQYYEPLKPSKLQRFLTQRKKT 77
Cdd:pfam14994   1 MGQKRQTKFQEgksKTSETSSVKFEKGIGVDNDEIFDTVGQSKFVLKNLRHYTVHPNLAQYYEPLKPTALQKFLARNRKI 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1958771515  78 NSFMVKVTEYDQDMTLLLMTNNPPPYSIGQQENNGAPIYFPPEFQLK 124
Cdd:pfam14994  81 RSFMLKVTEYDQDKTLLIMTNNPPPCPIDQQEKDIAPKYFSKELLLK 127
 
Name Accession Description Interval E-value
TSGA13 pfam14994
Testis-specific gene 13 protein; This family of uncharacterized proteins are found in ...
 1-124 1.13e-67

Testis-specific gene 13 protein; This family of uncharacterized proteins are found in chordates. In humans this gene is found to be expressed specifically in the testes.


Pssm-ID: 464429  Cd Length: 272  Bit Score: 205.09  E-value: 1.13e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958771515   1 MGPKKNSKLQE---SGGSKTSIKFEKQLGPDDEEMYDTTAQSKFVLKNLRHYTVHPNMAQYYEPLKPSKLQRFLTQRKKT 77
Cdd:pfam14994   1 MGQKRQTKFQEgksKTSETSSVKFEKGIGVDNDEIFDTVGQSKFVLKNLRHYTVHPNLAQYYEPLKPTALQKFLARNRKI 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1958771515  78 NSFMVKVTEYDQDMTLLLMTNNPPPYSIGQQENNGAPIYFPPEFQLK 124
Cdd:pfam14994  81 RSFMLKVTEYDQDKTLLIMTNNPPPCPIDQQEKDIAPKYFSKELLLK 127
 
Name Accession Description Interval E-value
TSGA13 pfam14994
Testis-specific gene 13 protein; This family of uncharacterized proteins are found in ...
 1-124 1.13e-67

Testis-specific gene 13 protein; This family of uncharacterized proteins are found in chordates. In humans this gene is found to be expressed specifically in the testes.


Pssm-ID: 464429  Cd Length: 272  Bit Score: 205.09  E-value: 1.13e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958771515   1 MGPKKNSKLQE---SGGSKTSIKFEKQLGPDDEEMYDTTAQSKFVLKNLRHYTVHPNMAQYYEPLKPSKLQRFLTQRKKT 77
Cdd:pfam14994   1 MGQKRQTKFQEgksKTSETSSVKFEKGIGVDNDEIFDTVGQSKFVLKNLRHYTVHPNLAQYYEPLKPTALQKFLARNRKI 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1958771515  78 NSFMVKVTEYDQDMTLLLMTNNPPPYSIGQQENNGAPIYFPPEFQLK 124
Cdd:pfam14994  81 RSFMLKVTEYDQDKTLLIMTNNPPPCPIDQQEKDIAPKYFSKELLLK 127
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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