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Conserved domains on  [gi|1958773048|ref|XP_038964709|]
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MKRN2 opposite strand protein isoform X2 [Rattus norvegicus]

Protein Classification

MKRN2 opposite strand protein( domain architecture ID 11240493)

MKRN2 opposite strand protein (MKRN2OS) is a DUF4796 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4796 pfam16044
Domain of unknown function (DUF4796); This family of proteins is functionally uncharacterized. ...
 10-135 1.49e-67

Domain of unknown function (DUF4796); This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 194 and 289 amino acids in length. There is a single completely conserved residue C that may be functionally important.


:

Pssm-ID: 464991  Cd Length: 189  Bit Score: 203.61  E-value: 1.49e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773048  10 EYDGKSDLHVGVTNTHGVVYNYSARGIQRDEAGWECCLsvpLVQPSMFGLLDQWDKYLEDFSASPAWLPHRYEENHHNCS 89
Cdd:pfam16044  67 DYDNGSDLHIGITDSKGDVYEYDENGVQRDTAGWEQCL---LVQPVMESWLDQWDEVLEQFSTSDMWSSERYEEESHNCY 143

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1958773048  90 SFALAFINCILAMEGQEQLEKSEFTEKYVIPRTRLAAKYITLYRAI 135
Cdd:pfam16044 144 TFVLTFLNALLYAELSSALSKEDFCEKFILPRTKRAAKYISLYRKI 189
 
Name Accession Description Interval E-value
DUF4796 pfam16044
Domain of unknown function (DUF4796); This family of proteins is functionally uncharacterized. ...
 10-135 1.49e-67

Domain of unknown function (DUF4796); This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 194 and 289 amino acids in length. There is a single completely conserved residue C that may be functionally important.


Pssm-ID: 464991  Cd Length: 189  Bit Score: 203.61  E-value: 1.49e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773048  10 EYDGKSDLHVGVTNTHGVVYNYSARGIQRDEAGWECCLsvpLVQPSMFGLLDQWDKYLEDFSASPAWLPHRYEENHHNCS 89
Cdd:pfam16044  67 DYDNGSDLHIGITDSKGDVYEYDENGVQRDTAGWEQCL---LVQPVMESWLDQWDEVLEQFSTSDMWSSERYEEESHNCY 143

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1958773048  90 SFALAFINCILAMEGQEQLEKSEFTEKYVIPRTRLAAKYITLYRAI 135
Cdd:pfam16044 144 TFVLTFLNALLYAELSSALSKEDFCEKFILPRTKRAAKYISLYRKI 189
 
Name Accession Description Interval E-value
DUF4796 pfam16044
Domain of unknown function (DUF4796); This family of proteins is functionally uncharacterized. ...
 10-135 1.49e-67

Domain of unknown function (DUF4796); This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 194 and 289 amino acids in length. There is a single completely conserved residue C that may be functionally important.


Pssm-ID: 464991  Cd Length: 189  Bit Score: 203.61  E-value: 1.49e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958773048  10 EYDGKSDLHVGVTNTHGVVYNYSARGIQRDEAGWECCLsvpLVQPSMFGLLDQWDKYLEDFSASPAWLPHRYEENHHNCS 89
Cdd:pfam16044  67 DYDNGSDLHIGITDSKGDVYEYDENGVQRDTAGWEQCL---LVQPVMESWLDQWDEVLEQFSTSDMWSSERYEEESHNCY 143

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1958773048  90 SFALAFINCILAMEGQEQLEKSEFTEKYVIPRTRLAAKYITLYRAI 135
Cdd:pfam16044 144 TFVLTFLNALLYAELSSALSKEDFCEKFILPRTKRAAKYISLYRKI 189
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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