|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
902-1084 |
1.82e-21 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 95.07 E-value: 1.82e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 902 AFAYCRRGAIYRKLGKLQSAMNDLQETIFVEPLFLNAYWHRHFIYLFQDKINDALDDLNFITKYNKNHAEAYLSKAEIFR 981
Cdd:COG0457 8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 982 EKNDITLAILNYSQAIKCRPKDASLYFKRGEMYEKTNKV-LAIDDFSKCIYYDPKRSDALWKRGMFYFENENWTGAVYDF 1060
Cdd:COG0457 88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYdEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELL 167
|
170 180
....*....|....*....|....
gi 1958785758 1061 TSLLKLEPHNSQASYDPSFNEHYI 1084
Cdd:COG0457 168 EKLEAAALAALLAAALGEAALALA 191
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1146-1310 |
1.38e-18 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 86.60 E-value: 1.38e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1146 IHSDPNNWLALYYRACLFRKCS-PQRALQDYSVSVLINDgyDNLNCFLHRGILYTELKFWMLAVCDFETVVTLERTATLA 1224
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGrYEEAIEDYEKALELDP--DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1225 YINIGLIYlQHLDNYTEAFWWFTEAIRVDPLYIQSYICRAETYSKLHKLKKAVTELSRAIHLQPDAIHLYIIRGQYLLMM 1304
Cdd:COG0457 79 LNNLGLAL-QALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157
|
....*.
gi 1958785758 1305 KSYDLA 1310
Cdd:COG0457 158 GRYEEA 163
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1123-1312 |
4.02e-18 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 85.44 E-value: 4.02e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1123 TNRGRAYFKRNLFKQATEDFSAAIHSDPNNWLALYYRA-CLFRKCSPQRALQDYSVSVLINDgyDNLNCFLHRGILYTEL 1201
Cdd:COG0457 12 NNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGlAYLRLGRYEEALADYEQALELDP--DDAEALNNLGLALQAL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1202 KFWMLAVCDFETVVTLERTATLAYINIGLIYLQhLDNYTEAFWWFTEAIRVDPLYIQSYICRAETYSKLHKLKKAVTELS 1281
Cdd:COG0457 90 GRYEEALEDYDKALELDPDDAEALYNLGLALLE-LGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLE 168
|
170 180 190
....*....|....*....|....*....|.
gi 1958785758 1282 RAIHLQPDAIHLYIIRGQYLLMMKSYDLAKL 1312
Cdd:COG0457 169 KLEAAALAALLAAALGEAALALAAAEVLLAL 199
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
964-1175 |
1.60e-17 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 83.52 E-value: 1.60e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 964 KYNKNHAEAYLSKAEIFREKNDITLAILNYSQAIKCRPKDASLYFKRGEMYEKTNKV-LAIDDFSKCIYYDPKRSDALWK 1042
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYeEALADYEQALELDPDDAEALNN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1043 RGMFYFENENWTGAVYDFTSLLKLEPHNSQASYdpsfnehyispgnllpgtkmwsilsscdfflqtefkskskqssimik 1122
Cdd:COG0457 82 LGLALQALGRYEEALEDYDKALELDPDDAEALY----------------------------------------------- 114
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1958785758 1123 tNRGRAYFKRNLFKQATEDFSAAIHSDPNNWLALYYRACLFRKCS-PQRALQDY 1175
Cdd:COG0457 115 -NLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGrYEEALELL 167
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
878-1041 |
1.18e-16 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 81.21 E-value: 1.18e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 878 EVIKYYESELELltqeikseKKNPAFAYCRRGAIYRKLGKLQSAMNDLQETIFVEPLFLNAYWHRHFIYLFQDKINDALD 957
Cdd:COG0457 26 EAIEDYEKALEL--------DPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 958 DLNFITKYNKNHAEAYLSKAEIFREKNDITLAILNYSQAIKCRPKDASLYFKRGEMYEKTNKVL-AIDDFSKCIYYDPKR 1036
Cdd:COG0457 98 DYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEeALELLEKLEAAALAA 177
|
....*
gi 1958785758 1037 SDALW 1041
Cdd:COG0457 178 LLAAA 182
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
932-1075 |
5.59e-16 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 79.28 E-value: 5.59e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 932 EPLFLNAYWHRHFIYLFQDKINDALDDLNFITKYNKNHAEAYLSKAEIFREKNDITLAILNYSQAIKCRPKDASLYFKRG 1011
Cdd:COG0457 4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958785758 1012 EMYEKTNKV-LAIDDFSKCIYYDPKRSDALWKRGMFYFENENWTGAVYDFTSLLKLEPHNSQASY 1075
Cdd:COG0457 84 LALQALGRYeEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALY 148
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
945-1287 |
1.03e-15 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 79.00 E-value: 1.03e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 945 IYLFQDKINDALDDLNFITKYNKNHAEAYLSKAEIFREKNDITLAILNYSQAIKCRPKDASLYFKRGEMYEKTNKV-LAI 1023
Cdd:COG2956 17 NYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLdRAE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1024 DDFSKCIYYDPKRSDALWKRGMFYFENENWTGAVYDFTSLLKLEPHNSQASYdpsfnehyispgnllpgtkmwsilsscd 1103
Cdd:COG2956 97 ELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYC---------------------------- 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1104 fflqtefkskskqssimiktNRGRAYFKRNLFKQATEDFSAAIHSDPNNWLALYYRACLFRKCS-PQRALQDYsvsvlin 1182
Cdd:COG2956 149 --------------------ELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGdYEEAIAAL------- 201
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1183 dgydnlncflhrgilytelkfwmlavcdfETVVTLERTATLAYINIGLIYlQHLDNYTEAFWWFTEAIRVDPLYIQsYIC 1262
Cdd:COG2956 202 -----------------------------ERALEQDPDYLPALPRLAELY-EKLGDPEEALELLRKALELDPSDDL-LLA 250
|
330 340
....*....|....*....|....*
gi 1958785758 1263 RAETYSKLHKLKKAVTELSRAIHLQ 1287
Cdd:COG2956 251 LADLLERKEGLEAALALLERQLRRH 275
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
950-1175 |
1.69e-15 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 77.26 E-value: 1.69e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 950 DKINDALDDLNFITKYNKNHAEAYLSKAEIFREKNDITLAILNYSQAIKCrPKDASLYFKRGEMYEKTNKV-LAIDDFSK 1028
Cdd:COG4785 20 SKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAL-PDLAQLYYERGVAYDSLGDYdLAIADFDQ 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1029 CIYYDPKRSDALWKRGMFYFENENWTGAVYDFTSLLKLEPHNSQAsydpsfnehyispgnllpgtkMWsilsscdfflqt 1108
Cdd:COG4785 99 ALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYA---------------------YL------------ 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958785758 1109 efkskskqssimiktNRGRAYFKRNLFKQATEDFSAAIHSDPNNWLALYYRACLFRKCSPQRALQDY 1175
Cdd:COG4785 146 ---------------NRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEKALALL 197
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
1154-1299 |
2.66e-15 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 76.49 E-value: 2.66e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1154 LALYYRACLFRKCSPQRALQDYSVSVLINDgyDNLNCFLHRGILYTELKFWMLAVCDFETVVTLERTATLAYINIGLIYL 1233
Cdd:COG4785 41 LADLALALAAAALAAAALAAERIDRALALP--DLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYL 118
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1234 QhLDNYTEAFWWFTEAIRVDPLYIQSYICRAETYSKLHKLKKAVTELSRAIHLQPD----AIHLYIIRGQ 1299
Cdd:COG4785 119 L-LGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNdperALWLYLAERK 187
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
883-1072 |
7.97e-15 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 76.31 E-value: 7.97e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 883 YESELELLTQEIKSEKKNpAFAYCRRGAIYRKLGKLQSAMNDLQETIFVEPLFLNAYWHRHFIYLFQDKINDALDDLNFI 962
Cdd:COG2956 58 YDRAIRIHQKLLERDPDR-AEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERL 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 963 TKYNKNHAEAYLSKAEIFREKNDITLAILNYSQAIKCRPKDASLYFKRGEMYEKTNKV-LAIDDFSKCIYYDPKRSDALW 1041
Cdd:COG2956 137 LKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYeEAIAALERALEQDPDYLPALP 216
|
170 180 190
....*....|....*....|....*....|.
gi 1958785758 1042 KRGMFYFENENWTGAVYDFTSLLKLEPHNSQ 1072
Cdd:COG2956 217 RLAELYEKLGDPEEALELLRKALELDPSDDL 247
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
887-1073 |
2.99e-14 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 74.77 E-value: 2.99e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 887 LELLTQEIKSEKKNPAfAYCRRGAIYRKLGKLQSAMNDLQETIFVEPLFLNAYWHRHFIYLFQDKINDALDDLNFITKYN 966
Cdd:COG2956 28 IDLLEEALELDPETVE-AHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELD 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 967 KNHAEAYLSKAEIFREKNDITLAILNYSQAIKCRPKDASLYFKRGEMYEKTNKV-LAIDDFSKCIYYDPKRSDALWKRGM 1045
Cdd:COG2956 107 PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYdEAIEALEKALKLDPDCARALLLLAE 186
|
170 180
....*....|....*....|....*...
gi 1958785758 1046 FYFENENWTGAVYDFTSLLKLEPHNSQA 1073
Cdd:COG2956 187 LYLEQGDYEEAIAALERALEQDPDYLPA 214
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1186-1321 |
3.43e-14 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 73.89 E-value: 3.43e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1186 DNLNCFLHRGILYTELKFWMLAVCDFETVVTLERTATLAYINIGLIYLQhLDNYTEAFWWFTEAIRVDPLYIQSYICRAE 1265
Cdd:COG0457 6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLR-LGRYEEALADYEQALELDPDDAEALNNLGL 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1958785758 1266 TYSKLHKLKKAVTELSRAIHLQPDAIHLYIIRGQYLLMMKSYDLAKLTIFQVAEMN 1321
Cdd:COG0457 85 ALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELD 140
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
997-1286 |
1.02e-13 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 72.35 E-value: 1.02e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 997 IKCRPKDASLYFKRGEMYEKTNKV-LAIDDFSKCIYYDPKRSDALWKRGMFYFENENWTGAVYDFTSLLKLEPHNSQASY 1075
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYeEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1076 dpsfnehyispgnllpgtkmwsilsscdfflqtefkskskqssimiktNRGRAYFKRNLFKQATEDFSAAIHSDPNNWLA 1155
Cdd:COG0457 81 ------------------------------------------------NLGLALQALGRYEEALEDYDKALELDPDDAEA 112
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1156 LYYRA-CLFRKCSPQRALQDYSVSVLINDgyDNLNCFLHRGILYTELKFWMLAVCDFEtvvTLERTATLAYINIGLIYLQ 1234
Cdd:COG0457 113 LYNLGlALLELGRYDEAIEAYERALELDP--DDADALYNLGIALEKLGRYEEALELLE---KLEAAALAALLAAALGEAA 187
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1958785758 1235 HLDNYTEAFWWFTEAIRVDPLYIQSYICRAETYSKLHKLKKAVTELSRAIHL 1286
Cdd:COG0457 188 LALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALA 239
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
973-1310 |
2.30e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 72.07 E-value: 2.30e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 973 YLSKAEIFREKNDITLAILNYSQAIKCRPKDASLYFKRGEMYEKTNKV-LAIDDFSKCIYYDPKRSDALWKRGMFYFENE 1051
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYdRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1052 NWTGAVYDFTSLLKLEPHNSQAsydpsfnehyispgnllpgtkmwsilsscdfflqtefkskskqssimiKTNRGRAYFK 1131
Cdd:COG2956 91 LLDRAEELLEKLLELDPDDAEA------------------------------------------------LRLLAEIYEQ 122
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1132 RNLFKQATEDFSAAIHSDPNNWLALYYRA-CLFRKCSPQRALQDYsvsvlindgydnlncflhrgilytelkfwmlavcd 1210
Cdd:COG2956 123 EGDWEKAIEVLERLLKLGPENAHAYCELAeLYLEQGDYDEAIEAL----------------------------------- 167
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1211 fETVVTLERTATLAYINIGLIYLQHlDNYTEAFWWFTEAIRVDPLYIQSYICRAETYSKLHKLKKAVTELSRAIHLQPDa 1290
Cdd:COG2956 168 -EKALKLDPDCARALLLLAELYLEQ-GDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS- 244
|
330 340
....*....|....*....|
gi 1958785758 1291 IHLYIIRGQYLLMMKSYDLA 1310
Cdd:COG2956 245 DDLLLALADLLERKEGLEAA 264
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
887-1086 |
5.11e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 73.49 E-value: 5.11e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 887 LELLTQEIKSEKKNPAFAYCRRGAIYRKLGKLQSAMNDLQETIFVEPLFLNAYWHRHFIYLFQDKINDALDDLNFITKYN 966
Cdd:COG3914 63 AAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALN 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 967 KNHAEAYLSKAEIFREKNDITLAILNYSQAIKCRPKDASLYFKRGEMYEKTNKV-LAIDDFSKCIYYDPKRSDALWKRGM 1045
Cdd:COG3914 143 PDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLeEAIAAYRRALELDPDNADAHSNLLF 222
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1958785758 1046 FYFENENWTGAVYDFTSLLKLEPHNSQASydpSFNEHYISP 1086
Cdd:COG3914 223 ALRQACDWEVYDRFEELLAALARGPSELS---PFALLYLPD 260
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1125-1321 |
2.38e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 68.99 E-value: 2.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1125 RGRAYFKRNLFKQATEDFSAAIHSDPNNWLALYYRACLFRKCS-PQRALQDYSVsvLINDGYDNLNCFLHRGILYTELKF 1203
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGeYDRAIRIHQK--LLERDPDRAEALLELAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1204 WMLAVCDFETVVTLERTATLAYINIGLIYLQhLDNYTEAFWWFTEAIRVDPLYIQSYICRAETYSKLHKLKKAVTELSRA 1283
Cdd:COG2956 92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQ-EGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170
|
170 180 190
....*....|....*....|....*....|....*...
gi 1958785758 1284 IHLQPDAIHLYIIRGQYLLMMKSYDLAKLTIFQVAEMN 1321
Cdd:COG2956 171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQD 208
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
954-1073 |
3.18e-12 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 65.03 E-value: 3.18e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 954 DALDDLNFITKYNKNHAEAYLSKAEIFREKNDITLAILNYSQAIKCRPKDASLYFKRGEMYEKTNKV-LAIDDFSKCIYY 1032
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTeEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1958785758 1033 DPKRSDALWKRGMFYFENENWTGAVYDFTSLLKLEPHNSQA 1073
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1126-1324 |
7.76e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 67.45 E-value: 7.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1126 GRAYFKRNLFKQATEDFSAAIHSDPNNWLALYYRACLFRKC-SPQRALQDYSVsvLINDGYDNLNCFLHRGILYTELKFW 1204
Cdd:COG2956 49 GNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAgLLDRAEELLEK--LLELDPDDAEALRLLAEIYEQEGDW 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1205 MLAVCDFETVVTLERTATLAYINIGLIYLQhLDNYTEAFWWFTEAIRVDPLYIQSYICRAETYSKLHKLKKAVTELSRAI 1284
Cdd:COG2956 127 EKAIEVLERLLKLGPENAHAYCELAELYLE-QGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERAL 205
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1958785758 1285 HLQPDAIHLYIIRGQYLLMMKSYDLAKLTIFQVAEMNKGL 1324
Cdd:COG2956 206 EQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD 245
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
907-1086 |
9.86e-12 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 66.09 E-value: 9.86e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 907 RRGAIYRKLGKLQSAMNDLQETIFVEPLFLNAYWHRHFIYLFQDKINDALDDLNfITKYNKNHAEAYLSKAEIFREKNDI 986
Cdd:COG4785 11 ALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERID-RALALPDLAQLYYERGVAYDSLGDY 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 987 TLAILNYSQAIKCRPKDASLYFKRGEMYEKTNKV-LAIDDFSKCIYYDPKRSDALWKRGMFYFENENWTGAVYDFTSLLK 1065
Cdd:COG4785 90 DLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYdAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALE 169
|
170 180
....*....|....*....|.
gi 1958785758 1066 LEPHNSQASYDPSFNEHYISP 1086
Cdd:COG4785 170 LDPNDPERALWLYLAERKLDP 190
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
945-1070 |
1.13e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 63.67 E-value: 1.13e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 945 IYLFQDKINDALDDLNFITKYNKNHAEAYLSKAEIFREKNDITLAILNYSQAIKCRPKDASLYFKRGEMYEKTNKV-LAI 1023
Cdd:COG4783 13 ALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYdEAL 92
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1958785758 1024 DDFSKCIYYDPKRSDALWKRGMFYFENENWTGAVYDFTSLLKLEPHN 1070
Cdd:COG4783 93 ALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
902-1035 |
1.40e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 63.29 E-value: 1.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 902 AFAYCRRGAIYRKLGKLQSAMNDLQETIFVEPLFLNAYWHRHFIYLFQDKINDALDDLNFITKYNKNHAEAYLSKAEIFR 981
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1958785758 982 EKNDITLAILNYSQAIKCRPKDASLYFKRGEMYEKTNKV-LAIDDFSKCIYYDPK 1035
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPdEAIAALEKALELDPD 138
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
865-1073 |
2.06e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 68.48 E-value: 2.06e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 865 LELTDYVKCNLPPEVIKYYESELELLTQEIKSEKKNPAFAYCRRGAIYRKLGKLQSAMNDLQETIFVEPLFLNAYWHRHF 944
Cdd:COG3914 7 LALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 945 IYLFQDKINDALDDLNFITKYNKNHAEAYLSKAEIFREKNDITLAILNYSQAIKCRPKDASLYFKRGEMYEKTNKV-LAI 1023
Cdd:COG3914 87 LLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLeEAI 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1024 DDFSKCIYYDPKRSDALWKRGMFYFENENWTGAVYDFTSLLKLEPHNSQA 1073
Cdd:COG3914 167 AALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADA 216
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
883-1003 |
6.96e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 61.36 E-value: 6.96e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 883 YESELELLTQEIKSEKKNPAfAYCRRGAIYRKLGKLQSAMNDLQETIFVEPLFLNAYWHRHFIYLFQDKINDALDDLNFI 962
Cdd:COG4783 20 YDEAEALLEKALELDPDNPE-AFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKA 98
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1958785758 963 TKYNKNHAEAYLSKAEIFREKNDITLAILNYSQAIKCRPKD 1003
Cdd:COG4783 99 LKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
902-1028 |
2.41e-10 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 61.85 E-value: 2.41e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 902 AFAYCRRGAIYRKLGKLQSAMNDLQETIFVEPLFLNAYWHRHFIYLFQDKINDALDDLNFITKYNKNHAEAYLSKAEIFR 981
Cdd:COG4785 73 AQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALY 152
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1958785758 982 EKNDITLAILNYSQAIKCRPKDASLYFKRGEMYEKTNKVLAIDDFSK 1028
Cdd:COG4785 153 YLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEKALALLLE 199
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1194-1310 |
4.11e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 59.05 E-value: 4.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1194 RGILYTELKFWMLAVCDFETVVTLERTATLAYINIGLIYLQhLDNYTEAFWWFTEAIRVDPLYIQSYICRAETYSKLHKL 1273
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQ-LGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDY 88
|
90 100 110
....*....|....*....|....*....|....*..
gi 1958785758 1274 KKAVTELSRAIHLQPDAIHLYIIRGQYLLMMKSYDLA 1310
Cdd:COG4783 89 DEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEA 125
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1120-1310 |
7.11e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 63.47 E-value: 7.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1120 MIKTNRGRAYFKRNLFKQATEDFSAAIHSDPNNW-LALYYRACLFRKCSPQRALQDYSVSVLINDGYDNLNCFLHRGILY 1198
Cdd:COG3914 2 AAAALLALAALAAAALLAAAAAAELALAAELEAAaLAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1199 TELKFWMLAVCDFETVVTLERTA-------TLAYINIGLIYLQhLDNYTEAFWWFTEAIRVDPLYIQSYICRAETYSKLH 1271
Cdd:COG3914 82 ELAALLLQALGRYEEALALYRRAlalnpdnAEALFNLGNLLLA-LGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160
|
170 180 190
....*....|....*....|....*....|....*....
gi 1958785758 1272 KLKKAVTELSRAIHLQPDAIHLYIIRGQYLLMMKSYDLA 1310
Cdd:COG3914 161 RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEA 199
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
902-1176 |
2.03e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 60.13 E-value: 2.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 902 AFAYCRRGAIYRKLGKLQSAMNDLQETIFVEPLFLNAYWHRHFIYLFQDKINDALDDLNFITKYNKNHAEAYLSKAEIFR 981
Cdd:COG2956 8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 982 EKNDITLAILNYSQAIKCRPKDASLYFKRGEMYEKTNKVL-AIDDFSKCIYYDPKRSDALWKRGMFYFENENWTGAVYDF 1060
Cdd:COG2956 88 KAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEkAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEAL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1061 TSLLKLEPHNSQASYdpSFNEHYISPGNLLPGTKMWsilsscdfflQTEFKSKSKQSSIMIKtnRGRAYFKRNLFKQATE 1140
Cdd:COG2956 168 EKALKLDPDCARALL--LLAELYLEQGDYEEAIAAL----------ERALEQDPDYLPALPR--LAELYEKLGDPEEALE 233
|
250 260 270
....*....|....*....|....*....|....*.
gi 1958785758 1141 DFSAAIHSDPNNWLALYYRACLFRKCSPQRALQDYS 1176
Cdd:COG2956 234 LLRKALELDPSDDLLLALADLLERKEGLEAALALLE 269
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
1124-1234 |
3.57e-09 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 58.39 E-value: 3.57e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1124 NRGRAYFKRNLFKQATEDFSAAIHSDPNNWLALYYRA-CLFRKCSPQRALQDYSVSVLINDGYDnlNCFLHRGILYTELK 1202
Cdd:COG4785 78 ERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGlAYLLLGDYDAALEDFDRALELDPDYA--YAYLNRGIALYYLG 155
|
90 100 110
....*....|....*....|....*....|..
gi 1958785758 1203 FWMLAVCDFETVVTLERTATLAYINIGLIYLQ 1234
Cdd:COG4785 156 RYELAIADLEKALELDPNDPERALWLYLAERK 187
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
884-1321 |
1.96e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 58.94 E-value: 1.96e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 884 ESELELLtqeIKSEKKNPAFAYCRRGAIYRKlGKLQSAMNDLQETIFVEPLFLNAYWHRHFIYLFQDKINDALDDLNFIT 963
Cdd:TIGR02917 247 EKHADAL---LKKAPNSPLAHYLKALVDFQK-KNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQIL 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 964 KYNKNHAEAYLSKAEIFREKNDITLAILNYSQAIKCRPKDASLYFKRGEMYektnkvLAIDDFSKCIYY-------DPKR 1036
Cdd:TIGR02917 323 KYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAY------LALGDFEKAAEYlakatelDPEN 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1037 SDALWKRGMFYFENENWTGAVYDFTSLLKLEPHNSQAsyDPSFNEHYISPGnllpgtKMWSILSSCDfflQTEFKSKSKQ 1116
Cdd:TIGR02917 397 AAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRA--DLLLILSYLRSG------QFDKALAAAK---KLEKKQPDNA 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1117 SSIMIktnRGRAYFKRNLFKQATEDFSAAIHSDPNNWLALYYRACLFRKC-SPQRALQDYSVSVLINDGydNLNCflhrg 1195
Cdd:TIGR02917 466 SLHNL---LGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEgNPDDAIQRFEKVLTIDPK--NLRA----- 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1196 ilytelkfwMLAVCDFetvvtlertatlayinigliYLQHLDNyTEAFWWFTEAIRVDPLYIQSYICRAETYSKLHKLKK 1275
Cdd:TIGR02917 536 ---------ILALAGL--------------------YLRTGNE-EEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKK 585
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 1958785758 1276 AVTELSRAIHLQPDAIHLYIIRGQYLLMMKSYDLAKLTIFQVAEMN 1321
Cdd:TIGR02917 586 ALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1125-1289 |
3.86e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 53.66 E-value: 3.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1125 RGRAYFKRNLFKQATEDFSAAIHSDPNNWLALYYRaclfrkcspqralqdysvsvlindgydnlncflhrGILYTELKFW 1204
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALL-----------------------------------GEILLQLGDL 54
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1205 MLAVCDFETVVTLERTATLAYINIGLIYLQhLDNYTEAFWWFTEAIRVDPLYIQSYICRAETYSKLHKLKKAVTELSRAI 1284
Cdd:COG4783 55 DEAIVLLHEALELDPDEPEARLNLGLALLK-AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKAL 133
|
....*
gi 1958785758 1285 HLQPD 1289
Cdd:COG4783 134 ELDPD 138
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
883-1019 |
7.43e-08 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 55.51 E-value: 7.43e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 883 YESELELLTQEIKSEKKNpAFAYCRRGAIYRKLGKLQSAMNDLQETIFVEPLFLNAYWHRHFIYLFQDKINDALDDLNFI 962
Cdd:COG2956 126 WEKAIEVLERLLKLGPEN-AHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERA 204
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958785758 963 TKYNKNHAEAYLSKAEIFREKNDITLAILNYSQAIKCRPkDASLYFKRGEMYEKTNK 1019
Cdd:COG2956 205 LEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP-SDDLLLALADLLERKEG 260
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
883-1311 |
3.70e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 54.70 E-value: 3.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 883 YESELELLTQEIKSEKKNPAFAYCRRGAIYRKLGKLQSAMNDLQETIFVEPLFLNAYWHRHFIYLFQDKINDALDDLNFI 962
Cdd:TIGR02917 106 FQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEV 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 963 TKYNKNHAEAYLSKAEIFREKNDITLAILNYSQAIKCRPKDASLYFKRGEMYEKTNKV-LAIDDFSKCIYYDPKRSDALW 1041
Cdd:TIGR02917 186 LTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFeEAEKHADALLKKAPNSPLAHY 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1042 KRGMFYFENENWTGAVYDFTSLLKLEPhnsqasydpsfnEHYisPGNLLPGTkmwsilsscdfflqtefkskskqssimi 1121
Cdd:TIGR02917 266 LKALVDFQKKNYEDARETLQDALKSAP------------EYL--PALLLAGA---------------------------- 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1122 ktnrgrAYFKRNLFKQATEDFSAAIHSDPNNWLALYYRAC-LFRKCSPQRALQdySVSVLINDGYDNLNCFLHRGILYTE 1200
Cdd:TIGR02917 304 ------SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASiQLRLGRVDEAIA--TLSPALGLDPDDPAALSLLGEAYLA 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1201 LKFWMLAVCDFETVVTLERTATLAYINIGLIYLQHLDNyTEAFWWFTEAIRVDPLYIQSYICRAETYSKLHKLKKAVTEL 1280
Cdd:TIGR02917 376 LGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDP-SEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAA 454
|
410 420 430
....*....|....*....|....*....|.
gi 1958785758 1281 SRAIHLQPDAIHLYIIRGQYLLMMKSYDLAK 1311
Cdd:TIGR02917 455 KKLEKKQPDNASLHNLLGAIYLGKGDLAKAR 485
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
970-1075 |
7.86e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 49.81 E-value: 7.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 970 AEAYLSKAEIFREKNDITLAILNYSQAIKCRPKDASLYFKRGEMYEKTNKV-LAIDDFSKCIYYDPKRSDALWKRGMFYF 1048
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLdEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100
....*....|....*....|....*..
gi 1958785758 1049 ENENWTGAVYDFTSLLKLEPHNSQASY 1075
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYL 110
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1224-1310 |
8.70e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 49.62 E-value: 8.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1224 AYINIGLIYLQhLDNYTEAFWWFTEAIRVDPLYIQSYICRAETYSKLHKLKKAVTELSRAIHLQPDAIHLYIIRGQYLLM 1303
Cdd:COG4235 19 GWLLLGRAYLR-LGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQ 97
|
....*..
gi 1958785758 1304 MKSYDLA 1310
Cdd:COG4235 98 QGDYAEA 104
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
989-1075 |
1.23e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 48.85 E-value: 1.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 989 AILNYSQAIKCRPKDASLYFKRGEMYEKTNKV-LAIDDFSKCIYYDPKRSDALWKRGMFYFENENWTGAVYDFTSLLKLE 1067
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYdEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
....*...
gi 1958785758 1068 PHNSQASY 1075
Cdd:COG4235 82 PDNPEALY 89
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
894-1290 |
2.05e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 52.39 E-value: 2.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 894 IKSEKKNPAfAYCRRGAIYRKLGKLQSAMNDLQETIFVEPLFLNAYWHRHFIYLFQDKINDALDDLNFITKYNKNHAEAY 973
Cdd:TIGR02917 458 EKKQPDNAS-LHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAI 536
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 974 LSKAEIFREKNDITLAILNYSQAIKCRPKDASLYFKRGEMYEKTN---KVLAIDDFSKCIYYDPKRsdALWKRGMFYFEN 1050
Cdd:TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGqlkKALAILNEAADAAPDSPE--AWLMLGRAQLAA 614
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1051 ENWTGAVYDFTSLLKLEPHNSQA----SYDPSFNEHY------------ISPGNLLpgtkmwSILSSCDFFLQTEFKSKS 1114
Cdd:TIGR02917 615 GDLNKAVSSFKKLLALQPDSALAllllADAYAVMKNYakaitslkraleLKPDNTE------AQIGLAQLLLAAKRTESA 688
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1115 KQSSIMIKTNR----------GRAYFKRNLFKQATEDFSAAIHSDPNNWLALYYRACLFRKCSPQRALQDYSVSvlINDG 1184
Cdd:TIGR02917 689 KKIAKSLQKQHpkaalgfeleGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAW--LKTH 766
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1185 YDNLNCFLHRGILYTELKFWMLAVCDFETVVTLERTATLAYINIGLIYLQHLDnyTEAFWWFTEAIRVDPLYIQSyicrA 1264
Cdd:TIGR02917 767 PNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKD--PRALEYAERALKLAPNIPAI----L 840
|
410 420 430
....*....|....*....|....*....|
gi 1958785758 1265 ETYSKL--HK--LKKAVTELSRAIHLQPDA 1290
Cdd:TIGR02917 841 DTLGWLlvEKgeADRALPLLRKAVNIAPEA 870
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1221-1322 |
3.21e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 48.42 E-value: 3.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1221 ATLAYINIGLIYLQhLDNYTEAFWWFTEAIRVDPLYIQSYICRAETYSKLHKLKKAVTELSRAIHLQPDAIHLYIIRGQY 1300
Cdd:COG5010 53 AFAIESPSDNLYNK-LGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAAL 131
|
90 100
....*....|....*....|..
gi 1958785758 1301 LLMMKSYDLAKLTIFQVAEMNK 1322
Cdd:COG5010 132 LLSLGQDDEAKAALQRALGTSP 153
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
933-1068 |
3.93e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 48.42 E-value: 3.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 933 PLFLNAYWHRHFIYLFQDKINDALDDLNFITKYNKNHAEAYLSKAEIFREKNDITLAILNYSQAIKCRPKDASLYFKRGE 1012
Cdd:COG5010 17 LTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLAL 96
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1958785758 1013 MYEKTNKV-LAIDDFSKCIYYDPKRSDALWKRGMFYFENENWTGAVYDFTSLLKLEP 1068
Cdd:COG5010 97 LYSRSGDKdEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
979-1016 |
9.98e-06 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 43.61 E-value: 9.98e-06
10 20 30
....*....|....*....|....*....|....*...
gi 1958785758 979 IFREKNDITLAILNYSQAIKCRPKDASLYFKRGEMYEK 1016
Cdd:pfam13414 3 AYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYK 40
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1210-1290 |
1.26e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 45.16 E-value: 1.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1210 DFETVVTLERTATLAYINIGLIYLQhLDNYTEAFWwFTEAIRVDPLYIQSYICRAETYSKLHKLKKAVTELSRAIHLQPD 1289
Cdd:COG3063 14 YYEKALELDPDNADALNNLGLLLLE-QGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
|
.
gi 1958785758 1290 A 1290
Cdd:COG3063 92 A 92
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
979-1068 |
1.67e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 44.78 E-value: 1.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 979 IFREKNDITLAILNYSQAIKCRPKDASLYFKRGEMYEKTNKVLAIDDFSKCIYYDPKRSDALWKRGMFYFENENWTGAVY 1058
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|
gi 1958785758 1059 DFTSLLKLEP 1068
Cdd:COG3063 81 YLERALELDP 90
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
911-1002 |
1.99e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 44.39 E-value: 1.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 911 IYRKLGKLQSAMNDLQETIFVEPLFLNAYWHRHFIYLFQDKINDALDdLNFITKYNKNHAEAYLSKAEIFREKNDITLAI 990
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 1958785758 991 LNYSQAIKCRPK 1002
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1232-1321 |
2.61e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 44.01 E-value: 2.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1232 YLQHLDNYTEAFWWFTEAIRVDPLYIQSYICRAETYSKLHKLKKAVtELSRAIHLQPDAIHLYIIRGQYLLMMKSYDLAK 1311
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|
gi 1958785758 1312 LTIFQVAEMN 1321
Cdd:COG3063 80 AYLERALELD 89
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
878-1286 |
3.13e-05 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 48.44 E-value: 3.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 878 EVIKYYESELELltqeikseKKNPAFaYCRRGAIYRKLGKLQSAMNDLQETIFVEPLFLNAYWHRHFIYLFQDKINDALD 957
Cdd:TIGR00990 145 KAIKLYSKAIEC--------KPDPVY-YSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALL 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 958 DLN---FITKYNKNHAEAYL---------SKA-EIFREKND---ITLAILNYSQAIKCRPKDA----------------- 1004
Cdd:TIGR00990 216 DLTascIIDGFRNEQSAQAVerllkkfaeSKAkEILETKPEnlpSVTFVGNYLQSFRPKPRPAgledsneldeetgngql 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1005 -----SLYFKRGEMYEKT----NKVLAIDDFSkciyydPKRSDALWKRGMFYFENENWTGAVYDFTSLLKLephnsqasy 1075
Cdd:TIGR00990 296 qlglkSPESKADESYEEAarafEKALDLGKLG------EKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--------- 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1076 DPSFNEHYIspgnllpgtKMWSIL------SSCDFFLQTEFKSKSKQSSIMIktNRGRAYFKRNLFKQATEDFSAAIHSD 1149
Cdd:TIGR00990 361 DPRVTQSYI---------KRASMNlelgdpDKAEEDFDKALKLNSEDPDIYY--HRAQLHFIKGEFAQAGKDYQKSIDLD 429
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1150 PNNWLA------LYYRACLFRKCSP--QRALQDYSVSVLINDGYDNLncflhrgiLYTELKFwMLAVCDFETVVTLERTA 1221
Cdd:TIGR00990 430 PDFIFShiqlgvTQYKEGSIASSMAtfRRCKKNFPEAPDVYNYYGEL--------LLDQNKF-DEAIEKFDTAIELEKET 500
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958785758 1222 TLAYINI------GLIYLQHLDNYTEAFWWFTEAIRVDPLYIQSYICRAETYSKLHKLKKAVTELSRAIHL 1286
Cdd:TIGR00990 501 KPMYMNVlplinkALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
883-1157 |
3.96e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 48.16 E-value: 3.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 883 YESELELLTQEIKSEKKNPAfAYCRRGAIYRKLGKLQSAMNDLQETIFVEPLFLNAYWHRHFIYLFQDKINDALDDLNFI 962
Cdd:TIGR02917 379 FEKAAEYLAKATELDPENAA-ARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKL 457
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 963 TKYNKNHAEAYLSKAEIFREKNDITLAILNYSQAIKCRPKDASLYFKRGEMYEKTNKV-LAIDDFSKCIYYDPKRSDALW 1041
Cdd:TIGR02917 458 EKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPdDAIQRFEKVLTIDPKNLRAIL 537
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1042 KRGMFYFENENWTGAVYDFTSLLKLEPHNsqasYDPSFN--EHYISPGNLlpgTKMWSILSSCdfflqTEFKSKSKQSSI 1119
Cdd:TIGR02917 538 ALAGLYLRTGNEEEAVAWLEKAAELNPQE----IEPALAlaQYYLGKGQL---KKALAILNEA-----ADAAPDSPEAWL 605
|
250 260 270
....*....|....*....|....*....|....*...
gi 1958785758 1120 MIktnrGRAYFKRNLFKQATEDFSAAIHSDPNNWLALY 1157
Cdd:TIGR02917 606 ML----GRAQLAAGDLNKAVSSFKKLLALQPDSALALL 639
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
1224-1310 |
4.10e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 46.45 E-value: 4.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1224 AYINIGLIYLqHLDNYTEAFWWFTEAIRVDPLYIQSYICRAETYSKLHKLKKAVTELSRAIHLQPDAIHLYIIRGQYLLM 1303
Cdd:COG4785 75 LYYERGVAYD-SLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYY 153
|
....*..
gi 1958785758 1304 MKSYDLA 1310
Cdd:COG4785 154 LGRYELA 160
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
875-1001 |
4.94e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 44.95 E-value: 4.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 875 LPPEVIKYYESELELLTQEIKSEKKNPAFAYCRRGAIYRKLGKLQSAMNDLQETIFVEPLFLNAYWHRHFIYLFQDKIND 954
Cdd:COG5010 27 YEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDE 106
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1958785758 955 ALDDLNFITKYNKNHAEAYLSKAEIFREKNDITLAILNYSQAIKCRP 1001
Cdd:COG5010 107 AKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1125-1316 |
7.52e-05 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 47.30 E-value: 7.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1125 RGRAYFKRNLFKQATEDFSAAIHSDPNNWLALYYRA-CLFRKCSPQRALQDYSVSVLINDGYdnlncflhrgilytelkf 1203
Cdd:COG3914 84 AALLLQALGRYEEALALYRRALALNPDNAEALFNLGnLLLALGRLEEALAALRRALALNPDF------------------ 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1204 wmlavcdfetvvtlertaTLAYINIGLIyLQHLDNYTEAFWWFTEAIRVDPLYIQSYICRAETYSKLHKLKKAVTELSRA 1283
Cdd:COG3914 146 ------------------AEAYLNLGEA-LRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRA 206
|
170 180 190
....*....|....*....|....*....|....
gi 1958785758 1284 IHLQPDAIHlyiIRGQYL-LMMKSYDLAKLTIFQ 1316
Cdd:COG3914 207 LELDPDNAD---AHSNLLfALRQACDWEVYDRFE 237
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
944-1073 |
2.04e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 42.29 E-value: 2.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 944 FIYLFQDKINDALDDL-NFITKY--NKNHAEAYLSKAEIFREKNDITLAILNYSQAIKCRPKDaslyfkrgemyektnkv 1020
Cdd:COG1729 1 KALLKAGDYDEAIAAFkAFLKRYpnSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDS----------------- 63
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1958785758 1021 laiddfskciyydPKRSDALWKRGMFYFENENWTGAVYDFTSLLKLEPHNSQA 1073
Cdd:COG1729 64 -------------PKAPDALLKLGLSYLELGDYDKARATLEELIKKYPDSEAA 103
|
|
| PTZ00449 |
PTZ00449 |
104 kDa microneme/rhoptry antigen; Provisional |
387-463 |
3.45e-04 |
|
104 kDa microneme/rhoptry antigen; Provisional
Pssm-ID: 185628 [Multi-domain] Cd Length: 943 Bit Score: 45.07 E-value: 3.45e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1958785758 387 PEDSGKPADTVLPTSDAKPTRRPTLDV-EPTGFMQIRGKEVKPTYKSTPAKPTKPRIPVRPEEDKkrIKKVPQPPSLP 463
Cdd:PTZ00449 588 PKDPEEPKKPKRPRSAQRPTRPKSPKLpELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPK--IIKSPKPPKSP 663
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1186-1299 |
7.21e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 41.14 E-value: 7.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1186 DNLNCFLHRGILYTELKFWMLAVCDFETVVTLERTATLAYINIGLIYLQhLDNYTEAFWWFTEAIRVDPLYIQSYICRAE 1265
Cdd:COG4235 15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLA-AGDTEEAEELLERALALDPDNPEALYLLGL 93
|
90 100 110
....*....|....*....|....*....|....
gi 1958785758 1266 TYSKLHKLKKAVTELSRAIHLQPDAIHLYIIRGQ 1299
Cdd:COG4235 94 AAFQQGDYAEAIAAWQKLLALLPADAPARLLEAS 127
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
887-1013 |
8.17e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 40.76 E-value: 8.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 887 LELLTQEIKSEKKNPAfAYCRRGAIYRKLGKLQSAMNDLQETIFVEPLFLNAYWHRHFIYLFQDKINDALDDLNFITKYN 966
Cdd:COG4235 3 IARLRQALAANPNDAE-GWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1958785758 967 KNHAEAYLSKAEIFREKNDITLAILNYSQAIKCRPKDASLYFKRGEM 1013
Cdd:COG4235 82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
1217-1311 |
1.47e-03 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 42.47 E-value: 1.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1217 LERTATLAYINigliylqhlDNYTEAFWWFTEAIRVDPLYIQSYICRAETYSKLHKLKKAVTELSRAIHLQPDAIHLYII 1296
Cdd:PLN03088 5 LEDKAKEAFVD---------DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLR 75
|
90
....*....|....*
gi 1958785758 1297 RGQYLLMMKSYDLAK 1311
Cdd:PLN03088 76 KGTACMKLEEYQTAK 90
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1006-1076 |
1.70e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 40.71 E-value: 1.70e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1958785758 1006 LYFKRGEMYEktnkvlAIDDFSKCIYYDPKRSDALWKRGMFYFENENWTGAVYDFTSLLKLEPHNSQASYD 1076
Cdd:COG5010 63 LYNKLGDFEE------SLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSN 127
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1022-1175 |
1.86e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.99 E-value: 1.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1022 AIDDFSKCIYYDPKRSDALWKRGMFYFENENWTGAVYDFTSLLKLEPHNSQAsydpsfnehyispgnllpgtkmwsilss 1101
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADA---------------------------- 53
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1958785758 1102 cdfflqtefkskskqssimiKTNRGRAYFKRNLFKQATEDFSAAIHSDPNNWLALYYRA-CLFRKCSPQRALQDY 1175
Cdd:COG4235 54 --------------------LLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGlAAFQQGDYAEAIAAW 108
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1127-1255 |
2.03e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 40.33 E-value: 2.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1127 RAYFKRNLFKQATEDFSAAIHSDPNNWLALYYRA-CLFRKCSPQRALQDYsvsvlindgydnlncflhrgilytelkfwm 1205
Cdd:COG5010 62 NLYNKLGDFEESLALLEQALQLDPNNPELYYNLAlLYSRSGDKDEAKEYY------------------------------ 111
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1206 lavcdfETVVTLERTATLAYINIGLIYLQhLDNYTEAFWWFTEAIRVDPL 1255
Cdd:COG5010 112 ------EKALALSPDNPNAYSNLAALLLS-LGQDDEAKAALQRALGTSPL 154
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1248-1321 |
5.30e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 38.45 E-value: 5.30e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1958785758 1248 EAIRVDPLYIQSYICRAETYSKLHKLKKAVTELSRAIHLQPDAIHLYIIRGQYLLMMKSYDLAKLTIFQVAEMN 1321
Cdd:COG4235 8 QALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
870-973 |
6.12e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.46 E-value: 6.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 870 YVKCNLPPEVIKYYESELELltqeikseKKNPAFAYCRRGAIYRKLGKLQSAMnDLQETIFVEPLFLNAYWHRHFIYLFQ 949
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLEL 72
|
90 100
....*....|....*....|....
gi 1958785758 950 DKINDALDDLNfitKYNKNHAEAY 973
Cdd:COG3063 73 GDYDEALAYLE---RALELDPSAL 93
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1006-1075 |
6.30e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.46 E-value: 6.30e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958785758 1006 LYFKRGEmYEKtnkvlAIDDFSKCIYYDPKRSDALWKRGMFYFENENWTGAVyDFTSLLKLEPHNSQASY 1075
Cdd:COG3063 1 LYLKLGD-LEE-----AEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALL 63
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
1253-1310 |
9.10e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 39.13 E-value: 9.10e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 1958785758 1253 DPLYIQSYICRAETYSKLHKLKKAVTELSRAIHLQPDAIHLYIIRGQYLLMMKSYDLA 1310
Cdd:COG4785 69 LPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAA 126
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
902-933 |
9.62e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 35.09 E-value: 9.62e-03
10 20 30
....*....|....*....|....*....|..
gi 1958785758 902 AFAYCRRGAIYRKLGKLQSAMNDLQETIFVEP 933
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNP 32
|
|
| |
