|
Name |
Accession |
Description |
Interval |
E-value |
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
217-281 |
5.11e-34 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 124.82 E-value: 5.11e-34
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024359659 217 IGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPRYGLFAPVHKV 281
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
61-125 |
3.30e-31 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 116.73 E-value: 3.30e-31
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024359659 61 VGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLRGIFTRPSKL 125
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
217-282 |
1.64e-27 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 106.52 E-value: 1.64e-27
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2024359659 217 IGDRVLVGGT-KAGVVRFLGETDFAKGEWCGVELDEPL-GKNDGAVAGTRYFQCQPRYGLFAPVHKVT 282
Cdd:smart01052 1 VGDRVEVGGGgRRGTVRYVGPTPFAPGVWVGVELDEPLrGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
61-126 |
1.81e-27 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 106.13 E-value: 1.81e-27
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2024359659 61 VGERVWVNGN-KPGFIQFLGETQFAPGQWAGIVLDEP-IGKNDGSVAGVRYFQCEPLRGIFTRPSKLS 126
Cdd:smart01052 1 VGDRVEVGGGgRRGTVRYVGPTPFAPGVWVGVELDEPlRGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
408-1284 |
1.29e-22 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 105.52 E-value: 1.29e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 408 EAKMDQLRAMVEAA------DREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLERKRQISEDPENTQTKLEHARIKEL 481
Cdd:TIGR02168 151 EAKPEERRAIFEEAagiskyKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALL 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 482 EQSLLFEKTKADKLQRELEDTRVATVSEKSRIMELERDLALRVKEVAELRGRLESSKHiddvdTSLSLLQEISSLQEKMA 561
Cdd:TIGR02168 231 VLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQK-----ELYALANEISRLEQQKQ 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 562 AAGKEHQREMSSLKEKFESSEEALRKEIKtLSASNERMGKENESLKTKLDHANKENSDVIELWKSkLESAIASHQQAMEE 641
Cdd:TIGR02168 306 ILRERLANLERQLEELEAQLEELESKLDE-LAEELAELEEKLEELKEELESLEAELEELEAELEE-LESRLEELEEQLET 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 642 LKVSFN---KGVGAQTAEFAELKTQMEKVKLDYENEMSNLKLKQENEKSQHLKEIEALKAKLLEVTEEKEQTLENLKAKL 718
Cdd:TIGR02168 384 LRSKVAqleLQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEAL 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 719 ESVEDQhLVEMEDTLNKLQEAEIKVSNLTKELQGKEQKLLDLEKNLSAVNQVKDSLEKELQLL------KEKFTSAVDGA 792
Cdd:TIGR02168 464 EELREE-LEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLselisvDEGYEAAIEAA 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 793 ----------ENAQRAMQeTINKLNQKEEQFALMSSELEQLKSNLTVMETKLKEREEREQQ----LTEAKVKLENDIAEI 858
Cdd:TIGR02168 543 lggrlqavvvENLNAAKK-AIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGvakdLVKFDPKLRKALSYL 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 859 MKSS--GDSSAQLMKMNDELRLKER------------------QLEQIQLELTKANEKAvQLQKNVEQTAQKAEQSQQEt 918
Cdd:TIGR02168 622 LGGVlvVDDLDNALELAKKLRPGYRivtldgdlvrpggvitggSAKTNSSILERRREIE-ELEEKIEELEEKIAELEKA- 699
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 919 LKTHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEKETSEmITKHDADIKGFKQNLLDAEEALKAAQKKNDELETQAE 998
Cdd:TIGR02168 700 LAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE-VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELA 778
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 999 ELKKQAEQAKAdkRAEEVLQTMEKVTKEKDAIHQEKIETLASLENSRQTNEKLQNELDMLKQNNlkneEELTKSKELLNL 1078
Cdd:TIGR02168 779 EAEAEIEELEA--QIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL----EDLEEQIEELSE 852
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1079 EnkkVEELKKEFEALKLAAAQKSQQLAALQEENVKLAEELgrsrdevtshQKLEEERSVLNNQLLEMKKRESTLKKEIDE 1158
Cdd:TIGR02168 853 D---IESLAAEIEELEELIEELESELEALLNERASLEEAL----------ALLRSELEELSEELRELESKRSELRRELEE 919
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1159 ERASLQKSISDTSALITQKDEELEKLRNEitvlrgENASAKTLQSVVKTLESDKLKLEEKVKNLEQKLKAkseqpltvts 1238
Cdd:TIGR02168 920 LREKLAQLELRLEGLEVRIDNLQERLSEE------YSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE---------- 983
|
890 900 910 920
....*....|....*....|....*....|....*....|....*.
gi 2024359659 1239 pSGDIaaNLLQDESAEDKQQEIDFLNSVIVDLQRRNEELNLKIQRM 1284
Cdd:TIGR02168 984 -LGPV--NLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEI 1026
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
403-1177 |
4.75e-22 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 103.60 E-value: 4.75e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 403 HVLEMEAKMDQLRAMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESitkgdlERKRQISEDPENTQtklehARIKELE 482
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELE------EEIEELQKELYALA-----NEISRLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 483 QSLLFEKTKADKLQRELEDTRVATVSEKSRIMELERDLALRVKEVAELRGRLESSKhiDDVDTSLSLLQEISSLQEKMAA 562
Cdd:TIGR02168 302 QQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLE--AELEELEAELEELESRLEELEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 563 AGKEHQREMSSLKEKFESSE---EALRKEIKTLSASNERMGKENESLKTKLDHANKE----NSDVIELWKSKLESAIASH 635
Cdd:TIGR02168 380 QLETLRSKVAQLELQIASLNneiERLEARLERLEDRRERLQQEIEELLKKLEEAELKelqaELEELEEELEELQEELERL 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 636 QQAMEELKVSFNKGVGAQTA---EFAELKTQMEKVKLDYENEMSNLKLKQENEKSQH-LKEIEALKAKLLEVTEEKEQTL 711
Cdd:TIGR02168 460 EEALEELREELEEAEQALDAaerELAQLQARLDSLERLQENLEGFSEGVKALLKNQSgLSGILGVLSELISVDEGYEAAI 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 712 EN-LKAKLESVED----------QHLVE--------MEDTLNKLQEAEIKVSNLTKELQGKEQKLLDLEKNLSAVNQ--- 769
Cdd:TIGR02168 540 EAaLGGRLQAVVVenlnaakkaiAFLKQnelgrvtfLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKals 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 770 -------VKDSLEKELQLLKEK------FT----------SAVDGAENAQRAMQETINKLNQKEEQFALMSSELEQLKSN 826
Cdd:TIGR02168 620 yllggvlVVDDLDNALELAKKLrpgyriVTldgdlvrpggVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKA 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 827 LTVMETKLkereereQQLTEAKVKLENDIAEIMKSSGDSSAQLMKMNDELRLKERQLEQIQLELTKANEKAVQLQKNVEQ 906
Cdd:TIGR02168 700 LAELRKEL-------EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEE 772
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 907 TaqkaeqsqQETLKTHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEKEtsemitkhdadikgfKQNLLDAEEALKAA 986
Cdd:TIGR02168 773 A--------EEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLL---------------NEEAANLRERLESL 829
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 987 QKKNDELETQAEELKKQAEQAKADkrAEEVLQTMEKVTKEKDAIHQEKIETLASLENSRQTNEKLQNELDMLKQNNLKNE 1066
Cdd:TIGR02168 830 ERRIAATERRLEDLEEQIEELSED--IESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELE 907
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1067 EELTKSKELLNLENKKVEELKKEFEALKLAAAQKSQQLAALQEENVKLAEELGRSRDEvtSHQKLEEERSVLNNQLLEM- 1145
Cdd:TIGR02168 908 SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIED--DEEEARRRLKRLENKIKELg 985
|
810 820 830 840
....*....|....*....|....*....|....*....|....*...
gi 2024359659 1146 -------------KKRESTLKKEID---EERASLQKSISDTSALITQK 1177
Cdd:TIGR02168 986 pvnlaaieeyeelKERYDFLTAQKEdltEAKETLEEAIEEIDREARER 1033
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
389-1232 |
1.27e-20 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 99.45 E-value: 1.27e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 389 IEQELALVRDGHDRHVLEMEAKMDQLRAMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLERKRQISEDPEN 468
Cdd:PTZ00121 1026 IEKIEELTEYGNNDDVLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKK 1105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 469 TQT-KLEHARIKEleqsllfEKTKADKLQRELEDTRVAtvSEKSRIMELERDLALRVKEVAElrgRLESSKHIddvdtsl 547
Cdd:PTZ00121 1106 TETgKAEEARKAE-------EAKKKAEDARKAEEARKA--EDARKAEEARKAEDAKRVEIAR---KAEDARKA------- 1166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 548 sllqEISSLQEKMAAAGKEHQREMSSLKEKFESSEEALRKEiKTLSASNERMGKEnesLKTKLDHANKENSDVIELWKSK 627
Cdd:PTZ00121 1167 ----EEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAE-AARKAEEERKAEE---ARKAEDAKKAEAVKKAEEAKKD 1238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 628 LESAIASHQQAMEELKVSFNKGVGAQTAEFAELKTQMEKVKLDYENEMSNLKLKQENEKSQHLKEIEALKAKllevtEEK 707
Cdd:PTZ00121 1239 AEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKK-----AEE 1313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 708 EQTLENLKAKLESVEDQhlveMEDTLNKLQEAEIKVSNLTKELQGKEQKLLDLEKNLSAVNQVKDSLEKELQLLKEKfTS 787
Cdd:PTZ00121 1314 AKKADEAKKKAEEAKKK----ADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKK-AE 1388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 788 AVDGAENAQRAMQETINKLNQkeeqfaLMSSELEQLKSNltvmetKLKEREEREQQLTEAKVKLENdiaeimkssgdssa 867
Cdd:PTZ00121 1389 EKKKADEAKKKAEEDKKKADE------LKKAAAAKKKAD------EAKKKAEEKKKADEAKKKAEE-------------- 1442
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 868 qlMKMNDELRLKERQLEQIQLELTKANEKavqlqKNVEQTAQKAEQSQQ-ETLKTHQEELKKMQDQLtdmkKQMETSQNQ 946
Cdd:PTZ00121 1443 --AKKADEAKKKAEEAKKAEEAKKKAEEA-----KKADEAKKKAEEAKKaDEAKKKAEEAKKKADEA----KKAAEAKKK 1511
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 947 YKDLQAKYEKETSEMITKHDADIKgfkqnlldAEEALKAAQKKNDELETQAEELKKQAEQAKAD--KRAEEVLQTMEKVT 1024
Cdd:PTZ00121 1512 ADEAKKAEEAKKADEAKKAEEAKK--------ADEAKKAEEKKKADELKKAEELKKAEEKKKAEeaKKAEEDKNMALRKA 1583
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1025 KEKDAIHQEKIETLASL---ENSRQTNEKLQNELDMLKQNNLKNEEELTKSKELLNL----ENKKVEELKKEFEALKLaa 1097
Cdd:PTZ00121 1584 EEAKKAEEARIEEVMKLyeeEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKkeaeEKKKAEELKKAEEENKI-- 1661
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1098 aqKSQQLAALQEENVKLAEELGRSRDEvtsHQKLEEErsvLNNQLLEMKKRESTLKKEIDEERAS--LQKSISDTSALIT 1175
Cdd:PTZ00121 1662 --KAAEEAKKAEEDKKKAEEAKKAEED---EKKAAEA---LKKEAEEAKKAEELKKKEAEEKKKAeeLKKAEEENKIKAE 1733
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*...
gi 2024359659 1176 QKDEELEKLRNEITVLRGENASAKTLQSVVKTLESDKLKL-EEKVKNLEQKLKAKSEQ 1232
Cdd:PTZ00121 1734 EAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIrKEKEAVIEEELDEEDEK 1791
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
358-1088 |
4.77e-20 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 97.05 E-value: 4.77e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 358 LKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALVRDGHdrhvLEMEAKMDQLRAMVEAADREKVELLNQLEEEKR 437
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEV----SELEEEIEELQKELYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 438 KVEDLQFRVEEESITKGDLERKRQISEDPENTQTKlehaRIKELEQSLLFEKTKADKLQRELEDTRVATVSEKSRIMELE 517
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEELAELEE----KLEELKEELESLEAELEELEAELEELESRLEELEEQLETLR 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 518 RDLALRVKEVAELRGRLES-SKHIDDVDTSLS-LLQEISSLQEKMAAAGK--------EHQREMSSLKEKFESSEEALRK 587
Cdd:TIGR02168 386 SKVAQLELQIASLNNEIERlEARLERLEDRRErLQQEIEELLKKLEEAELkelqaeleELEEELEELQEELERLEEALEE 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 588 ----------EIKTLSASNERMGKENESLKTKLDHANKENSDVIELWKSK-----------------------LESAIAS 634
Cdd:TIGR02168 466 lreeleeaeqALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQsglsgilgvlselisvdegyeaaIEAALGG 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 635 HQQAME-------ELKVSFNKGVGAQTAEFAELKTqmekVKLDYENEMSNLKLKQENEKSQHLKEIEALKAKL------- 700
Cdd:TIGR02168 546 RLQAVVvenlnaaKKAIAFLKQNELGRVTFLPLDS----IKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLrkalsyl 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 701 ---LEVTEEKEQTLENLKAKLES----VEDQHLV--------EMEDTLNKLQEAEIKVSNLTKELQGKEQKLLDLEKNLs 765
Cdd:TIGR02168 622 lggVLVVDDLDNALELAKKLRPGyrivTLDGDLVrpggvitgGSAKTNSSILERRREIEELEEKIEELEEKIAELEKAL- 700
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 766 avnqvkDSLEKELQLLKEKFTSAVDGAENAQRAMQETINKLNQKEEQFALMSSELEQLKSNLTVMETKLKEREEREQQLT 845
Cdd:TIGR02168 701 ------AELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAE 774
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 846 EAKVKLENDIAEIMKSSGDSSAQLMKMNDELRLKERQLEQIQLELTKANEKAVQLQKNVEQTAQKAEQSQQEtLKTHQEE 925
Cdd:TIGR02168 775 EELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQ-IEELSED 853
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 926 LKKMQDQLTDMKKQMETSQNQYKDLQAKYEketsemitKHDADIKGFKQNLLDAEEALKAAQKKNDELETQAEELKKQAE 1005
Cdd:TIGR02168 854 IESLAAEIEELEELIEELESELEALLNERA--------SLEEALALLRSELEELSEELRELESKRSELRRELEELREKLA 925
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1006 QAKADK-----RAEEVLQT-MEKVTKEKDAIHQEKIETLASLENSRQTNEKLQNELDMLKQNNLKNEEELTKSKELLNLE 1079
Cdd:TIGR02168 926 QLELRLeglevRIDNLQERlSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFL 1005
|
....*....
gi 2024359659 1080 NKKVEELKK 1088
Cdd:TIGR02168 1006 TAQKEDLTE 1014
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
669-1243 |
4.10e-19 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 93.55 E-value: 4.10e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 669 LDYENEMSNLKLKQENEKSQHLKEIEALKAKLLEVTEEKEQTLENLKAKLESVEDQHLvEMEDTLNKLQEAEIKVSNLTK 748
Cdd:TIGR04523 112 IKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKE-ELENELNLLEKEKLNIQKNID 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 749 ELQGKEQKLLDLEKNLSAVNQVKDSLEKELQLLKEKFTSAVDGAENAQRAMQETINKLNQKEEQFALMSSELEQLKSNLt 828
Cdd:TIGR04523 191 KIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQL- 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 829 vmETKLKEREEREQQLTEAKVKLENDIAEIMKSSGDSSAQLMK-MNDELRLKERQLEQIQLELTKANEKAVQLQKNVEQT 907
Cdd:TIGR04523 270 --SEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKeLKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQL 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 908 AQKAEQSQQETLKThQEELKKMQDQLTDMKKQmetsQNQYKDLQAKYEKETSEMITKhdadIKGFKQNLLDAEEALKAAQ 987
Cdd:TIGR04523 348 KKELTNSESENSEK-QRELEEKQNEIEKLKKE----NQSYKQEIKNLESQINDLESK----IQNQEKLNQQKDEQIKKLQ 418
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 988 KKNDELETQAEELK----KQAEQAKADKRAEEVLQTMEKVTKEKDAIHQEKIETL-ASLENSRQTNEKLQNELDMLKQNN 1062
Cdd:TIGR04523 419 QEKELLEKEIERLKetiiKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLsRSINKIKQNLEQKQKELKSKEKEL 498
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1063 LKNEEELTKSKELLNLENKKVEELKKEFEALKLAAAQKSQQLAALQEENVKLAEELGRSrdevtshqKLEEERSVLNNQL 1142
Cdd:TIGR04523 499 KKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKE--------NLEKEIDEKNKEI 570
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1143 LEMKKRESTLKK---EIDEERASLQKSISDTSALITQKDEELEKLRNEITVLRGENasaktlqsvvKTLESDKLKLEEKV 1219
Cdd:TIGR04523 571 EELKQTQKSLKKkqeEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKEN----------EKLSSIIKNIKSKK 640
|
570 580
....*....|....*....|....
gi 2024359659 1220 KNLEQKLKAKSEQPLTVTSPSGDI 1243
Cdd:TIGR04523 641 NKLKQEVKQIKETIKEIRNKWPEI 664
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
354-1026 |
6.66e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 93.58 E-value: 6.66e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 354 LQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALVRDGHDrhvlEMEAKMDQLRAMVEAADREKVELLNQLE 433
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELE----ELEAELEELESRLEELEEQLETLRSKVA 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 434 EEKRKVEDLQFRVEEESITKGDLERKRQI-SEDPENTQTKLEHARIKELEQSLLFEKTKADKLQRELEDTRVATVSEKSR 512
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLEDRRERlQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREE 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 513 IMELERDLALRVKEVAELRGRLESSKhiddvdtslSLLQEISSLQEKMAAAgKEHQREMS----------SLKEKFESS- 581
Cdd:TIGR02168 470 LEEAEQALDAAERELAQLQARLDSLE---------RLQENLEGFSEGVKAL-LKNQSGLSgilgvlseliSVDEGYEAAi 539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 582 EEALRKEIKTLSASNERMG-------KENES-------LKTKLDHANKENSDVIELWKSKLESAIASHQQAMEELKVSFN 647
Cdd:TIGR02168 540 EAALGGRLQAVVVENLNAAkkaiaflKQNELgrvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALS 619
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 648 KGVG--------AQTAEFA-ELKTQMEKVKLDYE------------NEMSNLKLKQENEKSQHLKEIEALKAKLlevtEE 706
Cdd:TIGR02168 620 YLLGgvlvvddlDNALELAkKLRPGYRIVTLDGDlvrpggvitggsAKTNSSILERRREIEELEEKIEELEEKI----AE 695
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 707 KEQTLENLKAKLESVEDqhlvEMEDTLNKLQEAEIKVSNLTKELQGKEQKLLDLEKNLsavnqvkDSLEKELQLLKEKFT 786
Cdd:TIGR02168 696 LEKALAELRKELEELEE----ELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI-------AQLSKELTELEAEIE 764
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 787 SAVDGAENAQRAMQETINKLNQKEEQFALMSSELEQLKSNLTVMETKLKEREEREQQLTEAKVKLENDIAEIMKSSGDSS 866
Cdd:TIGR02168 765 ELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLE 844
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 867 AQLMKMNDELRLKERQLEQIQLELTKANEKAVQLQKNVEQ------TAQKAEQSQQETLKTHQEELKKMQDQLTDMKKQM 940
Cdd:TIGR02168 845 EQIEELSEDIESLAAEIEELEELIEELESELEALLNERASleealaLLRSELEELSEELRELESKRSELRRELEELREKL 924
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 941 ETSQNQYKDLQAK-----------YEKETSEMITKHD-------------ADIKGFKQNL----LDAEEALKAAQKKNDE 992
Cdd:TIGR02168 925 AQLELRLEGLEVRidnlqerlseeYSLTLEEAEALENkieddeeearrrlKRLENKIKELgpvnLAAIEEYEELKERYDF 1004
|
730 740 750 760
....*....|....*....|....*....|....*....|
gi 2024359659 993 LETQAEEL---KKQAEQA--KADKRAEEVLQ-TMEKVTKE 1026
Cdd:TIGR02168 1005 LTAQKEDLteaKETLEEAieEIDREARERFKdTFDQVNEN 1044
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
357-1095 |
6.32e-18 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 90.13 E-value: 6.32e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 357 ALKEKQQHIEQ--LLAERDLERAEVAKATSHVGEIEQELALVRDGHDRHVLEMEAKMDQLRAMVEAADREKVELLNQLEE 434
Cdd:TIGR02169 215 ALLKEKREYEGyeLLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 435 EKRKVEdlqfrvEEESITKGDLERKRQISEDPENTQTKLE------HARIKELEQSLLFEKTKADKLQRELEDTRVATVS 508
Cdd:TIGR02169 295 KIGELE------AEIASLERSIAEKERELEDAEERLAKLEaeidklLAEIEELEREIEEERKRRDKLTEEYAELKEELED 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 509 EKSRIMELERDLALRVKEVAELRGRLESSKH-IDDVDTSLSLLQEissLQEKMAAAGKEHQREMSSLKEK---FESSEEA 584
Cdd:TIGR02169 369 LRAELEEVDKEFAETRDELKDYREKLEKLKReINELKRELDRLQE---ELQRLSEELADLNAAIAGIEAKineLEEEKED 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 585 LRKEIK-------TLSASNERMGKENESLKTKLDHANKENSDVielwKSKLESAIASHQQ---------AMEELKVSFNK 648
Cdd:TIGR02169 446 KALEIKkqewkleQLAADLSKYEQELYDLKEEYDRVEKELSKL----QRELAEAEAQARAseervrggrAVEEVLKASIQ 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 649 GVGAQTAEFAELKTQMEK-VKLDYENEMSNLKLKQEN---EKSQHLKEIEALKAKLLEVTEEKEQTLENLKAKLESVEDQ 724
Cdd:TIGR02169 522 GVHGTVAQLGSVGERYATaIEVAAGNRLNNVVVEDDAvakEAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGF 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 725 --HLVEME------------DTL--NKLQEA-----EIKVSNLTKEL--------------QGKEQKLLDLEKNLSAVNQ 769
Cdd:TIGR02169 602 avDLVEFDpkyepafkyvfgDTLvvEDIEAArrlmgKYRMVTLEGELfeksgamtggsrapRGGILFSRSEPAELQRLRE 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 770 VKDSLEKELQLLKEKFTSAVDGAENAQRAMQETINKLNQKEEQFALMSSELEQLKSNLTVMETKLKereEREQQLTEAKV 849
Cdd:TIGR02169 682 RLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLS---SLEQEIENVKS 758
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 850 KLENDIAEIMKSSGDSSAQLMKMND-ELRLKERQLEQIQLELTKANEKAVQLQKNVEQTAQK------AEQSQQETLKTH 922
Cdd:TIGR02169 759 ELKELEARIEELEEDLHKLEEALNDlEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKlnrltlEKEYLEKEIQEL 838
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 923 QEELKKMQDQLTDMKKQMETSQNQYKDLQAKyEKETSEMITKHDADIKGFKQNLLDAEEALKAAQKKNDELETQAEELKK 1002
Cdd:TIGR02169 839 QEQRIDLKEQIKSIEKEIENLNGKKEELEEE-LEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRK 917
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1003 QAEQAKAdkRAEEVLQTMEKVTKEKDAIhQEKIETLASLENSRQTNEKLQNELDMLKQNNLKNEEELTKSKELLNLENKK 1082
Cdd:TIGR02169 918 RLSELKA--KLEALEEELSEIEDPKGED-EEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEK 994
|
810
....*....|...
gi 2024359659 1083 VEELKKEFEALKL 1095
Cdd:TIGR02169 995 RAKLEEERKAILE 1007
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
416-1227 |
2.96e-17 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 88.20 E-value: 2.96e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 416 AMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLERKRQISEDPENTQTKLEHARIKELEQSLLFEKTKADKL 495
Cdd:TIGR02169 163 AGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAI 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 496 QRELEDTRVATVSEKSRIMELERDLALRVKEVAELRGRLE--SSKHIDDVDTSL-SLLQEISSLQEKMAAAgKEHQREMS 572
Cdd:TIGR02169 243 ERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKdlGEEEQLRVKEKIgELEAEIASLERSIAEK-ERELEDAE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 573 SLKEKFESSEEALRKEIKTLSASNERMGKENESLKTKLdhanKENSDVIELWKSKLESAIASHQQAMEELKvSFNKGVGA 652
Cdd:TIGR02169 322 ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEY----AELKEELEDLRAELEEVDKEFAETRDELK-DYREKLEK 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 653 QTAEFAELKTQMEKV---KLDYENEMSNLKLKQENEKSQHLKEIEALKAKLLEVtEEKEQTLENLKAKLESVEDQHlvem 729
Cdd:TIGR02169 397 LKREINELKRELDRLqeeLQRLSEELADLNAAIAGIEAKINELEEEKEDKALEI-KKQEWKLEQLAADLSKYEQEL---- 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 730 EDTLNKLQEAEIKVSNLTKELQGKE---QKLLDLEKNLSAVNQVKDS-------LEKELQLLKEKFTSAVDGA------- 792
Cdd:TIGR02169 472 YDLKEEYDRVEKELSKLQRELAEAEaqaRASEERVRGGRAVEEVLKAsiqgvhgTVAQLGSVGERYATAIEVAagnrlnn 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 793 ------------------ENAQRAMQETINKLNQKEEQ-----------FALMSSELEQLKSNLTVM---ETKLKEREE- 839
Cdd:TIGR02169 552 vvveddavakeaiellkrRKAGRATFLPLNKMRDERRDlsilsedgvigFAVDLVEFDPKYEPAFKYvfgDTLVVEDIEa 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 840 -REQQLTEAKVKLENDIAE--------IMKSSGDSS------AQLMKMNDELRLKERQLEQIQLELTKANEKAVQLQKNV 904
Cdd:TIGR02169 632 aRRLMGKYRMVTLEGELFEksgamtggSRAPRGGILfsrsepAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQEL 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 905 EQTAQKAE--QSQQETLKTHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEKETSEMitkhdadikgfkqnlldaEEA 982
Cdd:TIGR02169 712 SDASRKIGeiEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEEL------------------EED 773
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 983 LKAAQKKNDELETQAEELKKQAEQAKADKrAEEVLQTMEKVTKEKDAIHQEKIETLASLENSRQTNEKLQNELDMLKQNN 1062
Cdd:TIGR02169 774 LHKLEEALNDLEARLSHSRIPEIQAELSK-LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSI 852
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1063 LKNEEELtkskellnleNKKVEELKKEFEALKLAAAQKSQQLAALQEENVKLAEELGRSRDEVtshQKLEEERSVLNNQL 1142
Cdd:TIGR02169 853 EKEIENL----------NGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKI---EELEAQIEKKRKRL 919
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1143 LEMKKRESTLKKEIDEERASLQKSISDTSALITQKD--EELEKLRNEITVLRGENASA-----------KTLQSVVKTLE 1209
Cdd:TIGR02169 920 SELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDvqAELQRVEEEIRALEPVNMLAiqeyeevlkrlDELKEKRAKLE 999
|
890
....*....|....*...
gi 2024359659 1210 SDKLKLEEKVKNLEQKLK 1227
Cdd:TIGR02169 1000 EERKAILERIEEYEKKKR 1017
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
677-1282 |
3.56e-17 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 87.38 E-value: 3.56e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 677 NLKLKQENEKSQHLKEIEALKAKLlevtEEKEQTLENLkaklesvedqhlvemedtLNKLQEAEIKVSNLTKELQGKEQK 756
Cdd:TIGR04523 26 NIANKQDTEEKQLEKKLKTIKNEL----KNKEKELKNL------------------DKNLNKDEEKINNSNNKIKILEQQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 757 LLDLEKNLSAVNQVKDSLEKELQLLKEKFTSAVDGAENAQRAMQETINKLNQKEEQFALMSSELEQLKSNLTVMETKLKE 836
Cdd:TIGR04523 84 IKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYND 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 837 REEREQQLTEAKVKLENDIAEIMKSSGDSSAQLMKMN---DELRLKERQLEQIQLELTKANEKAVQLQKNVEQTAQKAEQ 913
Cdd:TIGR04523 164 LKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLElllSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINE 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 914 SQQEtLKTHQEELKKMQDQLTDMKKQMETSQNQYkdlqakyeKETSEMITKHDADIKGFKQNLLDAEEalKAAQKKNDEL 993
Cdd:TIGR04523 244 KTTE-ISNTQTQLNQLKDEQNKIKKQLSEKQKEL--------EQNNKKIKELEKQLNQLKSEISDLNN--QKEQDWNKEL 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 994 ETQAEELKKQAEQAKAdkraeEVLQTMEKVTKEKDAIHQEKIEtlasLENSRQTNEKLQNELDMlKQNNLK--NEEELTK 1071
Cdd:TIGR04523 313 KSELKNQEKKLEEIQN-----QISQNNKIISQLNEQISQLKKE----LTNSESENSEKQRELEE-KQNEIEklKKENQSY 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1072 SKELLNLENKKvEELKKEFEALKLAAAQKSQQLAALQEENVKLAEELGRSRDEVTSHQK----LEEERSVLNNQLLEMKK 1147
Cdd:TIGR04523 383 KQEIKNLESQI-NDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSeikdLTNQDSVKELIIKNLDN 461
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1148 RESTLKKEIDE---ERASLQKSISDTSALITQKDEELEKLRNEITVLRGENASAKTLQSVVKT----LESDKLKLEEKVK 1220
Cdd:TIGR04523 462 TRESLETQLKVlsrSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEkiekLESEKKEKESKIS 541
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024359659 1221 NLEQKLKAKSEqpltvtspsgDIAANLLQDESAEdKQQEIDFLNSVIVDLQRRNEELNLKIQ 1282
Cdd:TIGR04523 542 DLEDELNKDDF----------ELKKENLEKEIDE-KNKEIEELKQTQKSLKKKQEEKQELID 592
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
576-1228 |
2.87e-16 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 84.73 E-value: 2.87e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 576 EKFESSEEALRKEIKTLSASNERMGKENESLKTKLDHANKENSDVIELWKSKLE------SAIASHQQAMEELKVSFNKG 649
Cdd:TIGR02169 166 AEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEkreyegYELLKEKEALERQKEAIERQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 650 VGAQTAEFAELKTQMEKVKLDYENemSNLKLKQENEKSQHLKEIE--ALKAKLLEVTEEKEQT-------------LENL 714
Cdd:TIGR02169 246 LASLEEELEKLTEEISELEKRLEE--IEQLLEELNKKIKDLGEEEqlRVKEKIGELEAEIASLersiaekereledAEER 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 715 KAKLESVEDQHLVEMEDTLNKLQEAEIKVSNLTKELQGKEQKLLDLEKNLSAVnqvkdslEKELQLLKEKFTSAVDGAEN 794
Cdd:TIGR02169 324 LAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEV-------DKEFAETRDELKDYREKLEK 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 795 AQRAMQETINKLNQKEEQFALMSSELEQLKSNLTVMETKLKEREEREQQLTEAKVKLENDIAEIMKSSGDSSAQLMKMND 874
Cdd:TIGR02169 397 LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 875 ELRLKERQLEQIQLELTKANEKAVQLQKNV----------------------------EQTAQKAE-------------- 912
Cdd:TIGR02169 477 EYDRVEKELSKLQRELAEAEAQARASEERVrggraveevlkasiqgvhgtvaqlgsvgERYATAIEvaagnrlnnvvved 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 913 ----QSQQETLKTHQE------ELKKMQDQLTDMKKQMETSQNQYK----DLQAKYEKETS---------EMITKHDADI 969
Cdd:TIGR02169 557 davaKEAIELLKRRKAgratflPLNKMRDERRDLSILSEDGVIGFAvdlvEFDPKYEPAFKyvfgdtlvvEDIEAARRLM 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 970 KGFKQNLLDAEEALKAAQKKNDELETQAEELKKQAEQAKADKRAEEvLQTMEK----VTKEKDAIHQEKIETLASLENSR 1045
Cdd:TIGR02169 637 GKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRER-LEGLKRelssLQSELRRIENRLDELSQELSDAS 715
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1046 QTNEKLQNELDMLKQNNLKNEEELTKSKELLNLENKKVEELKKEFEALKLAAAQKSQQLAALQEENVKLAEELGRSR-DE 1124
Cdd:TIGR02169 716 RKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRiPE 795
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1125 VTSH-QKLEEERSVLNNQL--LEMKKRESTLKKEI-DEERASLQKSISDTSAlitQKDEELEKLRNEITVLRGENASAKT 1200
Cdd:TIGR02169 796 IQAElSKLEEEVSRIEARLreIEQKLNRLTLEKEYlEKEIQELQEQRIDLKE---QIKSIEKEIENLNGKKEELEEELEE 872
|
730 740
....*....|....*....|....*...
gi 2024359659 1201 LQSVVKTLESDKLKLEEKVKNLEQKLKA 1228
Cdd:TIGR02169 873 LEAALRDLESRLGDLKKERDELEAQLRE 900
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
690-1284 |
2.92e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 84.60 E-value: 2.92e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 690 LKEIEALKAKLLEV---TEEKEQTLENLKA---------KLESVEDQHLVEMedTLNKLQEAEIKVSNLTKELQGKEQKL 757
Cdd:COG1196 178 ERKLEATEENLERLediLGELERQLEPLERqaekaeryrELKEELKELEAEL--LLLKLRELEAELEELEAELEELEAEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 758 LDLEKNLSAVNQVKDSLEKELQLLKEKFTSAVDGAENAQRAMQETINKLNQKEEQFALMSSELEQLKSNLTVMETKLKER 837
Cdd:COG1196 256 EELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEEL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 838 EEREQQLTEAKVKLENDIAEIMKSSGDSSAQLMKMNDELRLKERQLEQIQLELTKANEKAVQLQKNVEQTAQKAEQSQQE 917
Cdd:COG1196 336 EEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLER 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 918 TLKTHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEKETSEMITKHDADIKGFKQNLLDAEEA-LKAAQKKNDELETQ 996
Cdd:COG1196 416 LERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAeLLEELAEAAARLLL 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 997 AEELKKQAEQAKADKRAEEVLQTMEKVTKEKDAIHQEKIETLASLENSrqtneklqnELDMLKQNNLKNEEELTKSKELL 1076
Cdd:COG1196 496 LLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAA---------LAAALQNIVVEDDEVAAAAIEYL 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1077 NLENKKVEELKKEFEALKLAAAQKSQQLAALQEENVKLAEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKRESTLKKEI 1156
Cdd:COG1196 567 KAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRL 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1157 DE---ERASLQKSISDTSALITQKDEELEKLRNEITVLRGENASAKTLQSVVKTLESDKLKLEEKVKNLEQKLKAKSEQP 1233
Cdd:COG1196 647 REvtlEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEAL 726
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|...
gi 2024359659 1234 LTVTSPSGDIAANLLQDESAEDKQQEIDFLNSVIV--DLQRRNEELNLKIQRM 1284
Cdd:COG1196 727 EEQLEAEREELLEELLEEEELLEEEALEELPEPPDleELERELERLEREIEAL 779
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
666-1227 |
1.05e-15 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 82.80 E-value: 1.05e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 666 KVKLDYENEMSNLK--LKQENEKSQHLKEIEALKAKLLEVTEEKEQTLENLKAKLESVEDQhLVEMEDTLNKLQEAEIKV 743
Cdd:PRK03918 169 EVIKEIKRRIERLEkfIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKE-VKELEELKEEIEELEKEL 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 744 SNLTKELQGKEQKLLDLEKNLSAVNQVKDSLEKELQLLKEkftsaVDGAENAQRAMQETINKLNQKEEQFALMSSELEQL 823
Cdd:PRK03918 248 ESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKE-----LKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 824 KSNLTVMETKLKEREEREQQLTEAKVKLENDIAEIMKSsgdssaqlMKMNDELRLKERQLEQIQLELTKAN-EKAVQLQK 902
Cdd:PRK03918 323 INGIEERIKELEEKEERLEELKKKLKELEKRLEELEER--------HELYEEAKAKKEELERLKKRLTGLTpEKLEKELE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 903 NVEQtaqkaeqsQQETLKTHQEELKKMQDQLTDMKKQMETSQNQYKDLQAK--------YEKETSEMITKHDADIKGFKQ 974
Cdd:PRK03918 395 ELEK--------AKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpvcgrelTEEHRKELLEEYTAELKRIEK 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 975 NLLDAEEALKAAQKKNDELETQAEELKKQAEQAKADKRAEEVLQTMEKVTKEKDAIHQEKIETLASLENsrqtneKLQNE 1054
Cdd:PRK03918 467 ELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLI------KLKGE 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1055 LDMLKQNnLKNEEELTKSKELLNLENKKVEELKKEFEALKLAAAQKS--------QQLAALQEENVKLAEELGRSRDEVT 1126
Cdd:PRK03918 541 IKSLKKE-LEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESveeleerlKELEPFYNEYLELKDAEKELEREEK 619
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1127 SHQKLEEERSVLNNQLLEMKKRESTLKKEIDEerasLQKSISDtsalitqkdEELEKLRNEITVLRGENASA----KTLQ 1202
Cdd:PRK03918 620 ELKKLEEELDKAFEELAETEKRLEELRKELEE----LEKKYSE---------EEYEELREEYLELSRELAGLraelEELE 686
|
570 580
....*....|....*....|....*
gi 2024359659 1203 SVVKTLESDKLKLEEKVKNLEQKLK 1227
Cdd:PRK03918 687 KRREEIKKTLEKLKEELEEREKAKK 711
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
542-1232 |
3.15e-15 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 80.92 E-value: 3.15e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 542 DVDTSLSLLQEISSLQEKMAAAGKEHQREMSSLKEKfESSEEALRKEIKTLSASNERMGKENESLKTKLDHANKENSDVI 621
Cdd:pfam05483 69 DFENSEGLSRLYSKLYKEAEKIKKWKVSIEAELKQK-ENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLI 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 622 E------LWKSKLESAIAS----------HQQAMEELKVSFNKGVGAQTAEFAELKTQMEKVKLDYenemsNLKLKQENE 685
Cdd:pfam05483 148 KennatrHLCNLLKETCARsaektkkyeyEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEM-----HFKLKEDHE 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 686 KSQHLKEiealkaKLLEVTEEKEQTLENLKAKLESVEDQhlveMEDTLNKLQEAEIKVSNLtkelqgkEQKLLDLEKNLS 765
Cdd:pfam05483 223 KIQHLEE------EYKKEINDKEKQVSLLLIQITEKENK----MKDLTFLLEESRDKANQL-------EEKTKLQDENLK 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 766 AVNQVKDSLEKELQLLKEKFTSAVDGAENAQRAMQETINKLNQKEEQFALMSSELEQLKSNLTVMETKLK-------ERE 838
Cdd:pfam05483 286 ELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEattcsleELL 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 839 EREQQLTEakvKLENDIAEIMKSSGDSSAQLMKMNDELRLKERQLEQIQLELTKaNEKAVQLQKNVEQTAQKAEQSQQET 918
Cdd:pfam05483 366 RTEQQRLE---KNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAE-DEKLLDEKKQFEKIAEELKGKEQEL 441
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 919 ---LKTHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEKETSEMI------TKHDADIKGFKQNLLDAEEALKAAQKK 989
Cdd:pfam05483 442 iflLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIeltahcDKLLLENKELTQEASDMTLELKKHQED 521
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 990 NDELETQAEELKKQAEQAKadkraEEVLQTMEKVTKEKDAIHQEKIETLASLENSRQTNEKLQNELDMLKQNNLKNEEEL 1069
Cdd:pfam05483 522 IINCKKQEERMLKQIENLE-----EKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKC 596
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1070 TKSKELLNLENKKVEELKKEFEALKLAAAQKSQQLAALQEENVKLAEELGRSRDE----VTSHQKLEEERSVLNNQLL-E 1144
Cdd:pfam05483 597 NNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKfeeiIDNYQKEIEDKKISEEKLLeE 676
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1145 MKKREST------LKKEIDEErasLQKSISDTSALITQKDEELEKLRNEITVLRGENASAKTLQSVVK-TLESDKLKLEE 1217
Cdd:pfam05483 677 VEKAKAIadeavkLQKEIDKR---CQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKaALEIELSNIKA 753
|
730
....*....|....*
gi 2024359659 1218 KVKNLEQKLKAKSEQ 1232
Cdd:pfam05483 754 ELLSLKKQLEIEKEE 768
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
730-1228 |
6.89e-15 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 80.11 E-value: 6.89e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 730 EDTLNKLQEAEIKVSNLTKELQGKEQ---KLLDLEKNLSAVNQVKDSLEKELQLLKEKftsaVDGAENAQRAMQETINKL 806
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTENieeLIKEKEKELEEVLREINEISSELPELREE----LEKLEKEVKELEELKEEI 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 807 NQKEEqfalmssELEQLKSNLTVMETKLKEREEREQQLTEAKVKLENDIAEI--MKSSGDSSAQLMKMNDELRLKERQLE 884
Cdd:PRK03918 241 EELEK-------ELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELkeLKEKAEEYIKLSEFYEEYLDELREIE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 885 qiqLELTKANEKAVQLQKNVEQTAQKaeQSQQETLKTHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEKETSEMITK 964
Cdd:PRK03918 314 ---KRLSRLEEEINGIEERIKELEEK--EERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 965 HDADIKGFKQNLLDAEEALKAAQKKNDELETQAEELKKQAEQAKADKRA----------EEVLQTMEKVTKEKDAIHQEK 1034
Cdd:PRK03918 389 LEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpvcgrelteEHRKELLEEYTAELKRIEKEL 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1035 IETLASLENSRQTNEKLQNELdmlkqnnlKNEEELTKSKELLNlENKKVEELKKEFEALKLAAaqKSQQLAALQEENVKL 1114
Cdd:PRK03918 469 KEIEEKERKLRKELRELEKVL--------KKESELIKLKELAE-QLKELEEKLKKYNLEELEK--KAEEYEKLKEKLIKL 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1115 AEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKRESTLKKEIDEERASLQKSISdtsalitQKDEELEKLRNEITVLRGe 1194
Cdd:PRK03918 538 KGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELE-------ERLKELEPFYNEYLELKD- 609
|
490 500 510
....*....|....*....|....*....|....
gi 2024359659 1195 naSAKTLQSVVKTLESDKLKLEEKVKNLEQKLKA 1228
Cdd:PRK03918 610 --AEKELEREEKELKKLEEELDKAFEELAETEKR 641
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
565-1090 |
7.85e-15 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 79.68 E-value: 7.85e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 565 KEHQREMSSLKEKFESSEEALRKEIKTLSASNERMGKENESLKTKLDHANKENSDVI-ELWKSKLESAIASHQQAMEELK 643
Cdd:TIGR04523 130 EKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQkNIDKIKNKLLKLELLLSNLKKK 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 644 VSFNKGVGAQTAEFAELKTQMEKVKLDYENEMSNLKLKQENEKSQhLKEIEALKAKLLEVTEEKEQTLENLKAKLESVED 723
Cdd:TIGR04523 210 IQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQ-LNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEK 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 724 QhLVEMEDTLNKL--QEAEIKVSNLTKELQGKEQKLLDLEKNLSAVNQVKDSLEKELQLLKEKFTSAVDGAENAQRAMQE 801
Cdd:TIGR04523 289 Q-LNQLKSEISDLnnQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEE 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 802 TINKLNQKEEQFALMSSELEQLKSNLTVMETKLKEREEREQQLTEAKVKLENDIAEIMKSSGDSSAQLMKMNDELRLKER 881
Cdd:TIGR04523 368 KQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTN 447
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 882 QLEQIQLELTKANEKAVQLQKNVEQTAQKAEQSQQeTLKTHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKyEKETSEM 961
Cdd:TIGR04523 448 QDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQ-NLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKK-ISSLKEK 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 962 ITKHDADIKGFKQNLLDAEEALKA--AQKKNDELETQAEELKKQAEQAKADKRAEEVLQtmEKVTKEKDAIHQEKIETLA 1039
Cdd:TIGR04523 526 IEKLESEKKEKESKISDLEDELNKddFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQ--EEKQELIDQKEKEKKDLIK 603
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 2024359659 1040 SLENSRQTNEKLQNELDMLKQNNLKNEEELTKSKELLNLENKKVEELKKEF 1090
Cdd:TIGR04523 604 EIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETI 654
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
659-1189 |
1.57e-14 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 78.95 E-value: 1.57e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 659 ELKTQMEKVK--LDYENEMSNLKLKQENEKSQHLKEIEALKAKLLEVTEEKE------QTLENLKAKLESVEdqhlVEME 730
Cdd:PRK03918 173 EIKRRIERLEkfIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEklekevKELEELKEEIEELE----KELE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 731 DTLNKLQEAEIKVSNLTKELQGKEQKLLDLEKNLSAVNQVKDSLEK--ELQLLKEKFTSAVDGAENAQRAMQETINKLNQ 808
Cdd:PRK03918 249 SLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEyiKLSEFYEEYLDELREIEKRLSRLEEEINGIEE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 809 KEEQFALMSSELEQLKSNLTVMETKLKEREEREQQLTEAKVKLENdIAEIMKSSGDSSAQlmKMNDELRLKERQLEQIQL 888
Cdd:PRK03918 329 RIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEE-LERLKKRLTGLTPE--KLEKELEELEKAKEEIEE 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 889 ELTKANEKAVQLQKNVEQT------------------AQKAEQSQQETLKTHQEELKKMQDQLTDMKKQMETSQNQYKDL 950
Cdd:PRK03918 406 EISKITARIGELKKEIKELkkaieelkkakgkcpvcgRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELREL 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 951 QAKYEKETSEMITKHDAD-IKGFKQNL--LDAEEALKAAQ------KKNDELETQAEELKKQAEQAKA-DKRAEEVLQTM 1020
Cdd:PRK03918 486 EKVLKKESELIKLKELAEqLKELEEKLkkYNLEELEKKAEeyeklkEKLIKLKGEIKSLKKELEKLEElKKKLAELEKKL 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1021 EKVTKEKDAIH--------------QEKIETLASLENSRQTNEKLQNELDMLKQNNLKNEEELTKSKELLNLENKKVEEL 1086
Cdd:PRK03918 566 DELEEELAELLkeleelgfesveelEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEEL 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1087 KKEFEALKLAAAQKsqQLAALQEENVKLAEELGRSRDEVTSHQKLEEERSvlnnQLLEMKKRESTLKKEIDEERASLQKS 1166
Cdd:PRK03918 646 RKELEELEKKYSEE--EYEELREEYLELSRELAGLRAELEELEKRREEIK----KTLEKLKEELEEREKAKKELEKLEKA 719
|
570 580
....*....|....*....|...
gi 2024359659 1167 ISDTSALItqkdEELEKLRNEIT 1189
Cdd:PRK03918 720 LERVEELR----EKVKKYKALLK 738
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
353-1027 |
1.74e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.83 E-value: 1.74e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 353 ALQEALKEKQqhIEQLLAERDLERAEVAKATSHVGEIEQELAlvrdghdrhvlemeakmdQLRAMVEAADREKVELLNQL 432
Cdd:COG1196 217 ELKEELKELE--AELLLLKLRELEAELEELEAELEELEAELE------------------ELEAELAELEAELEELRLEL 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 433 EEEKRKVEDLQFRVEEESITKGDLERKRQisedpentqtkLEHARIKELEQSLLFEKTKADKLQRELEDTRVATVSEKSR 512
Cdd:COG1196 277 EELELELEEAQAEEYELLAELARLEQDIA-----------RLEERRRELEERLEELEEELAELEEELEELEEELEELEEE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 513 IMELERDLALRVKEVAELRGRLEsskhiddvdtslSLLQEISSLQEKMAAAGKEHQREMSSLKEKfESSEEALRKEIKTL 592
Cdd:COG1196 346 LEEAEEELEEAEAELAEAEEALL------------EAEAELAEAEEELEELAEELLEALRAAAEL-AAQLEELEEAEEAL 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 593 SASNERMGKENESLKTKLDHANKEnSDVIELWKSKLESAIASHQQAMEELKVSfnkgVGAQTAEFAELKTQMEKVKLDYE 672
Cdd:COG1196 413 LERLERLEEELEELEEALAELEEE-EEEEEEALEEAAEEEAELEEEEEALLEL----LAELLEEAALLEAALAELLEELA 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 673 NEMSNLKLKQENEKSQHLKEIEALKAKLLEVTEEKEQTLenlkakleSVEDQHLVEMEDTLNKLQEAEIKVSNLTKELQG 752
Cdd:COG1196 488 EAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAV--------AVLIGVEAAYEAALEAALAAALQNIVVEDDEVA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 753 KEQKLLDLEKNLSAVNQVKDSLEKELQLLKEKFTSAVDGAENAQRAMqetinklnqkEEQFALMSSELEQLKSNLTVMET 832
Cdd:COG1196 560 AAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVAS----------DLREADARYYVLGDTLLGRTLVA 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 833 KLKEREEREQQLTEAKVKLENDIAEIMKSSGDSSAQLMKMNDELRLKERQLEQIQLELTKANEKAVQLQKNVEQTAQKAE 912
Cdd:COG1196 630 ARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEEREL 709
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 913 QSQQETLKTHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEKETSEMITKHDA---DIKGFKQNL-------LDAEEA 982
Cdd:COG1196 710 AEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEElerELERLEREIealgpvnLLAIEE 789
|
650 660 670 680
....*....|....*....|....*....|....*....|....*
gi 2024359659 983 LKAAQKKNDELETQAEELkkqaEQAKadkraEEVLQTMEKVTKEK 1027
Cdd:COG1196 790 YEELEERYDFLSEQREDL----EEAR-----ETLEEAIEEIDRET 825
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
358-930 |
2.56e-14 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 78.24 E-value: 2.56e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 358 LKEKQQHIEQLLAERDLE----RAEVAKATSHVGEIEQELALVRDG-------HDRHVLEMEAKMDQLRAMVEAADREKV 426
Cdd:pfam15921 262 LQQHQDRIEQLISEHEVEitglTEKASSARSQANSIQSQLEIIQEQarnqnsmYMRQLSDLESTVSQLRSELREAKRMYE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 427 ELLNQLEEekrkvedlQFRVEEESITKGDLERKrQISEDPENTQTKLE------HARIKELeqSLLFEKTK--------- 491
Cdd:pfam15921 342 DKIEELEK--------QLVLANSELTEARTERD-QFSQESGNLDDQLQklladlHKREKEL--SLEKEQNKrlwdrdtgn 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 492 ---ADKLQRELEDtrvatvseksRIMELERDLALRVKEVAELRGRLEsskhiddvdtslsllQEISSLQEKmaaagKEHQ 568
Cdd:pfam15921 411 sitIDHLRRELDD----------RNMEVQRLEALLKAMKSECQGQME---------------RQMAAIQGK-----NESL 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 569 REMSSLKEKFESSEEALRKEIKTLSAsnERMGKEN-ESLKTKLDHANKENSDVIELWKS---KLESAIASHQQAMEELKV 644
Cdd:pfam15921 461 EKVSSLTAQLESTKEMLRKVVEELTA--KKMTLESsERTVSDLTASLQEKERAIEATNAeitKLRSRVDLKLQELQHLKN 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 645 SFNKGVGAQTaEFAELKTQM---EKVKLDYENEMSNL-KLKQENEKSQHLKEIEalKAKLLEVTEEKEQTLENLKAkLES 720
Cdd:pfam15921 539 EGDHLRNVQT-ECEALKLQMaekDKVIEILRQQIENMtQLVGQHGRTAGAMQVE--KAQLEKEINDRRLELQEFKI-LKD 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 721 VEDQHLVEMEDTLNKLQEAEIKVSNLTKEL--------QGKEQKLLDLEKNLSAVNqvkdSLEKELQLLKEKFTSAVDGA 792
Cdd:pfam15921 615 KKDAKIRELEARVSDLELEKVKLVNAGSERlravkdikQERDQLLNEVKTSRNELN----SLSEDYEVLKRNFRNKSEEM 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 793 E-----------NAQRAMQETINKLNQKE--------------EQFALMSSELEQLKSNLTVMETKLKEREEREQQLTEA 847
Cdd:pfam15921 691 EtttnklkmqlkSAQSELEQTRNTLKSMEgsdghamkvamgmqKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEE 770
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 848 KVKLENDIAEIMKSSGDSSAQLmkmnDELRLKERQLEQIQLELTKANEKAVQLQKNVEQTAQKAEQSQQETLKTHQEELK 927
Cdd:pfam15921 771 KNKLSQELSTVATEKNKMAGEL----EVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVK 846
|
...
gi 2024359659 928 KMQ 930
Cdd:pfam15921 847 ELQ 849
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
636-1232 |
4.14e-14 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 77.70 E-value: 4.14e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 636 QQAMEELKVSFNKGVGAQTAEFAELKTQMEKVKLDYENEMSNLKLKQENEKSQHLKEIEALKAKLLEVTEEKEQTLENLK 715
Cdd:TIGR00618 248 KREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLL 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 716 AKLESVEDQH--LVEMEDTLNKLQEAEIKVSNLTKELQGKEQKL---LDLEKNLSAVNQVKDSLEKELQLLKEKFT---- 786
Cdd:TIGR00618 328 MKRAAHVKQQssIEEQRRLLQTLHSQEIHIRDAHEVATSIREIScqqHTLTQHIHTLQQQKTTLTQKLQSLCKELDilqr 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 787 --SAVDGAENAQRAMQETINKLnQKEEQFALMSSELEQLKSNLTVMETKLKEREERE-QQLTEAKVKLENDIAEIMKSSG 863
Cdd:TIGR00618 408 eqATIDTRTSAFRDLQGQLAHA-KKQQELQQRYAELCAAAITCTAQCEKLEKIHLQEsAQSLKEREQQLQTKEQIHLQET 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 864 DSSAQLMKMNDELRLKERQLEQIQLELtkanEKAVQLQKNVEQTAQKAEQSQQEtLKTHQEELKKMQDQLTDMKKQMETS 943
Cdd:TIGR00618 487 RKKAVVLARLLELQEEPCPLCGSCIHP----NPARQDIDNPGPLTRRMQRGEQT-YAQLETSEEDVYHQLTSERKQRASL 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 944 QNQYKDLQAKYEKETSeMITKHDADIKGFKQNLLDAEEALKAAQKKNDEL--ETQAEELKKQAEQAKADKRAEEvLQTME 1021
Cdd:TIGR00618 562 KEQMQEIQQSFSILTQ-CDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLacEQHALLRKLQPEQDLQDVRLHL-QQCSQ 639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1022 KVTKEKDAIHQ---------EKIETLASLENSRQTNEKLQNELDML---KQNNLKNEEELTKSKELLNLENKKVEELKKE 1089
Cdd:TIGR00618 640 ELALKLTALHAlqltltqerVREHALSIRVLPKELLASRQLALQKMqseKEQLTYWKEMLAQCQTLLRELETHIEEYDRE 719
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1090 FEALKLAAAQKSQQLAALQEENVKLAEELGRSRDEVTSHQKLEEERSVLNNQLLEMK-KRESTLKKEID---EERASLQK 1165
Cdd:TIGR00618 720 FNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTgAELSHLAAEIQffnRLREEDTH 799
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2024359659 1166 SISDTSALITQK--DEELEKLRNEITVLRGENASAKTLQSVVKTLESDKLKLEEKVKNLEQKLKAKSEQ 1232
Cdd:TIGR00618 800 LLKTLEAEIGQEipSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQ 868
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
516-1232 |
4.29e-14 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 77.85 E-value: 4.29e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 516 LERDLALRVKEVAELRGRLESSKHIDDvDTSLSLLQEISSLQEKMAAAGKEHQrEMSSLKEKFESSEEALRKEIKTLSas 595
Cdd:pfam15921 76 IERVLEEYSHQVKDLQRRLNESNELHE-KQKFYLRQSVIDLQTKLQEMQMERD-AMADIRRRESQSQEDLRNQLQNTV-- 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 596 nermgKENESLKT-KLDHANKENSDVIELWKSKLesaiaSHQQAMEELK---VSFNKGVGAQ--------TAEFAELKTQ 663
Cdd:pfam15921 152 -----HELEAAKClKEDMLEDSNTQIEQLRKMML-----SHEGVLQEIRsilVDFEEASGKKiyehdsmsTMHFRSLGSA 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 664 MEKVKLDYENEMSNLKLKQENEKSQhlkeIEALKAkllEVTEEKEQTLENLKAKLESVEDQHLVEMEDTLNKLQEAEIKV 743
Cdd:pfam15921 222 ISKILRELDTEISYLKGRIFPVEDQ----LEALKS---ESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQA 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 744 SNLTKEL-----QGKEQ------KLLDLEknlSAVNQVKDSLEKELQLLKEKFTSAVDGAENAQRAMQETINKLNQKEEQ 812
Cdd:pfam15921 295 NSIQSQLeiiqeQARNQnsmymrQLSDLE---STVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQE 371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 813 FALMSSELEQLKSNLTVMETKLKEREEREQQLTEAKVKLENDIAEIMKSSGDSSAQLMKMNDELR-LKERQLEQIQLELT 891
Cdd:pfam15921 372 SGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKaMKSECQGQMERQMA 451
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 892 KANEKAVQLQKNVEQTAQkaeqsqqetLKTHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEkETSEMITKHDADIKG 971
Cdd:pfam15921 452 AIQGKNESLEKVSSLTAQ---------LESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQ-EKERAIEATNAEITK 521
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 972 FKQNLLDAEEALKAAQKKNDEL---ETQAEELKKQaeQAKADKRAEEVLQTMEKVTKekdAIHQEKIETLASLENSRQTN 1048
Cdd:pfam15921 522 LRSRVDLKLQELQHLKNEGDHLrnvQTECEALKLQ--MAEKDKVIEILRQQIENMTQ---LVGQHGRTAGAMQVEKAQLE 596
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1049 EKLQNELDMLKQNNLKNEEELTKSKELlnleNKKVEELKKEFEALKLAAAQKSQQLAALQEENVKLAEELGRSRDEVTS- 1127
Cdd:pfam15921 597 KEINDRRLELQEFKILKDKKDAKIREL----EARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSl 672
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1128 -----------HQKLEEERSVLNNQLLEMKKRESTL------------------------KKEIDEERA---SLQKSISD 1169
Cdd:pfam15921 673 sedyevlkrnfRNKSEEMETTTNKLKMQLKSAQSELeqtrntlksmegsdghamkvamgmQKQITAKRGqidALQSKIQF 752
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024359659 1170 TSALITQKDEELEKLRNEITVLRGENASAKT----LQSVVKTLESDKLKLEEKVKNLEQKLKAKSEQ 1232
Cdd:pfam15921 753 LEEAMTNANKEKHFLKEEKNKLSQELSTVATeknkMAGELEVLRSQERRLKEKVANMEVALDKASLQ 819
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
406-1232 |
4.95e-14 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 77.78 E-value: 4.95e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 406 EMEAKMDQLRAMVEAADREKVELLNQLEEEKRKVEDLQ----------FRVEEESITKGDL-----ERKRQISEDPENTQ 470
Cdd:TIGR01612 541 EIEAGLKESYELAKNWKKLIHEIKKELEEENEDSIHLEkeikdlfdkyLEIDDEIIYINKLklelkEKIKNISDKNEYIK 620
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 471 TKLEHARIKELEQSLLFEKTKADKLQ----RELEDTRVATV-SEKSRIME-----LERDLALRVKEVAelRGRLESSKHI 540
Cdd:TIGR01612 621 KAIDLKKIIENNNAYIDELAKISPYQvpehLKNKDKIYSTIkSELSKIYEddidaLYNELSSIVKENA--IDNTEDKAKL 698
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 541 DDVDTSLSllQEISSLQEKMAAAGKEHQREMSSLKEKFESSEEALRKEI-----KTLSASNERMGKENESLKTKLDHANK 615
Cdd:TIGR01612 699 DDLKSKID--KEYDKIQNMETATVELHLSNIENKKNELLDIIVEIKKHIhgeinKDLNKILEDFKNKEKELSNKINDYAK 776
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 616 ENsDVIELWKSKLesaiashqqamEELKVSFNKGVGAQTAEFAELKTQMEKVKlDYENEMSnlklKQENEKSQHLKEIEA 695
Cdd:TIGR01612 777 EK-DELNKYKSKI-----------SEIKNHYNDQINIDNIKDEDAKQNYDKSK-EYIKTIS----IKEDEIFKIINEMKF 839
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 696 LKAKLLEVTEEKEQTLENLKAKLESVEDQhlveMEDTLNKLQeAEIkvsnltkelqgKEQKLLDLEKNL----SAVNQVK 771
Cdd:TIGR01612 840 MKDDFLNKVDKFINFENNCKEKIDSEHEQ----FAELTNKIK-AEI-----------SDDKLNDYEKKFndskSLINEIN 903
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 772 DSLEKELQLLKEkfTSAVDGAENAQRAMQETINKLNQKEEQFAlmsselEQLKSNL-TVMETKLKEREEREQ---QLTEA 847
Cdd:TIGR01612 904 KSIEEEYQNINT--LKKVDEYIKICENTKESIEKFHNKQNILK------EILNKNIdTIKESNLIEKSYKDKfdnTLIDK 975
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 848 KVKLENDIAEIMKSSGDS-SAQLMKMNDELRL-----KERQLEQIQLELTKANEKAVQLQKNVEQTAQKAEQSQQETLKT 921
Cdd:TIGR01612 976 INELDKAFKDASLNDYEAkNNELIKYFNDLKAnlgknKENMLYHQFDEKEKATNDIEQKIEDANKNIPNIEIAIHTSIYN 1055
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 922 HQEEL-----KKMQDQLTDMKKQMETSQNQYKDLQAKYE-------------KETSEmITKHDADIKGFKQ----NLLDA 979
Cdd:TIGR01612 1056 IIDEIekeigKNIELLNKEILEEAEINITNFNEIKEKLKhynfddfgkeeniKYADE-INKIKDDIKNLDQkidhHIKAL 1134
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 980 EEALKAAQKKNDELETQAEELKKQAEQAKADKRAEEVLQTMEKVTKEKDAiHQEKIETLASLENSRQTNEKLQNELDMLK 1059
Cdd:TIGR01612 1135 EEIKKKSENYIDEIKAQINDLEDVADKAISNDDPEEIEKKIENIVTKIDK-KKNIYDEIKKLLNEIAEIEKDKTSLEEVK 1213
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1060 QNNLKNEEELTK-SKELLNLENKKVEELKKEFEALKL---AAAQKSQQLAALQEENVKLAEEL-------GRSRDEVTSH 1128
Cdd:TIGR01612 1214 GINLSYGKNLGKlFLEKIDEEKKKSEHMIKAMEAYIEdldEIKEKSPEIENEMGIEMDIKAEMetfnishDDDKDHHIIS 1293
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1129 QKLEEERSVLNNQLLEMKKRESTlKKEIDEERASLQKSISDTSALITQKDEELEKLRNEITVLRGENasaktLQSVVKTL 1208
Cdd:TIGR01612 1294 KKHDENISDIREKSLKIIEDFSE-ESDINDIKKELQKNLLDAQKHNSDINLYLNEIANIYNILKLNK-----IKKIIDEV 1367
|
890 900
....*....|....*....|....
gi 2024359659 1209 ESDKLKLEEKVKNLEQKLkAKSEQ 1232
Cdd:TIGR01612 1368 KEYTKEIEENNKNIKDEL-DKSEK 1390
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
215-275 |
3.81e-13 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 74.34 E-value: 3.81e-13
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2024359659 215 LKIGDRVLVGGTKaGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPRYGLF 275
Cdd:COG5244 4 LSVNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIF 63
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
336-1284 |
9.18e-13 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 73.29 E-value: 9.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 336 LLTETSSRYARKISGTTALQEALKEKQQHIEQLlaERDLERAEVAKATSHVGEIEQELALVRdgHDRHVLEMEAKMDQLR 415
Cdd:pfam01576 76 ILHELESRLEEEEERSQQLQNEKKKMQQHIQDL--EEQLDEEEAARQKLQLEKVTTEAKIKK--LEEDILLLEDQNSKLS 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 416 AMVEAADREKVELLNQLEEEKRKVEDLQfrveeesitkgdlerkrQISEDPENTQTKLEHARIKELEQSLLFEKTKAdKL 495
Cdd:pfam01576 152 KERKLLEERISEFTSNLAEEEEKAKSLS-----------------KLKNKHEAMISDLEERLKKEEKGRQELEKAKR-KL 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 496 QRELEDTRVATVSEKSRIMELERDLALRVKEVAELRGRLESS--------KHIDDVDTSLSLLQEiSSLQEKMAAAGKEH 567
Cdd:pfam01576 214 EGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEEtaqknnalKKIRELEAQISELQE-DLESERAARNKAEK 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 568 QREmsSLKEKFESSEEALRKEIKTLSASNERMGK---ENESLKTKLDHANKENSDVIELWKSKLESAIASHQQAMEELK- 643
Cdd:pfam01576 293 QRR--DLGEELEALKTELEDTLDTTAAQQELRSKreqEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKr 370
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 644 --VSFNKGVGAQTAEFAELKTQMEKV---KLDYENEMSNLKlKQENEKSQHLKEIEALKAKLLEVTEEKEQTLENLKAKL 718
Cdd:pfam01576 371 nkANLEKAKQALESENAELQAELRTLqqaKQDSEHKRKKLE-GQLQELQARLSESERQRAELAEKLSKLQSELESVSSLL 449
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 719 ESVEDQHL----------VEMEDTLNKLQEAEIKVSNLTKELQGKEQKLLDLEKNLSAVNQVKDSLEKELQLLK------ 782
Cdd:pfam01576 450 NEAEGKNIklskdvssleSQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQaqlsdm 529
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 783 ----EKFTSAVDGAENAQRAMQETINKLNQKEEQFALMSSELEQLKSNLTVMETKLKEREEREQQLTEAKVKLENDIAEI 858
Cdd:pfam01576 530 kkklEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQM 609
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 859 MKSSGDSSAQLMKMNDELRLKERQLEQIQLELTKANEKAVQLQKNVEQT--AQKAEQ----SQQETLKTHQEELKK---- 928
Cdd:pfam01576 610 LAEEKAISARYAEERDRAEAEAREKETRALSLARALEEALEAKEELERTnkQLRAEMedlvSSKDDVGKNVHELERskra 689
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 929 MQDQLTDMKKQMETSQNQYK---DLQAKYEKETSEMITKHDADIKGFKQNlldAEEALKAAQKKNDELETQAEELKKQAE 1005
Cdd:pfam01576 690 LEQQVEEMKTQLEELEDELQateDAKLRLEVNMQALKAQFERDLQARDEQ---GEEKRRQLVKQVRELEAELEDERKQRA 766
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1006 QAKADKRAEEVlqTMEKVTKEKDAIHQEKIETLASLENSRQTNEKLQNELDMLKqnnLKNEEELTKSKE----LLNLEnK 1081
Cdd:pfam01576 767 QAVAAKKKLEL--DLKELEAQIDAANKGREEAVKQLKKLQAQMKDLQRELEEAR---ASRDEILAQSKEsekkLKNLE-A 840
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1082 KVEELKKEFEALKLAAAQKSQQLAALQEE-------NVKLAEELGRSRDEVTS-HQKLEEERS---VLNNQLLEMKKRES 1150
Cdd:pfam01576 841 ELLQLQEDLAASERARRQAQQERDELADEiasgasgKSALQDEKRRLEARIAQlEEELEEEQSnteLLNDRLRKSTLQVE 920
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1151 TLKKEIDEERASLQKSISDTSALITQKDEELEKLRNEitvlrgENASAKTLQSVVKTLESDKLKLEEKvknLEQKLKAKS 1230
Cdd:pfam01576 921 QLTTELAAERSTSQKSESARQQLERQNKELKAKLQEM------EGTVKSKFKSSIAALEAKIAQLEEQ---LEQESRERQ 991
|
970 980 990 1000 1010
....*....|....*....|....*....|....*....|....*....|....*...
gi 2024359659 1231 EQPLTVTSPSGDIAANLLQDES----AEDKQQEIDFLNSVIVDLQRRNEELNLKIQRM 1284
Cdd:pfam01576 992 AANKLVRRTEKKLKEVLLQVEDerrhADQYKDQAEKGNSRMKQLKRQLEEAEEEASRA 1049
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
744-1216 |
3.06e-12 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 71.61 E-value: 3.06e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 744 SNLTKELQGKEQKllDLEKNLSAVNQVKDSLEKELQLLKEKFTSAVDGAENAQramqETINKLNQKEEQFALMSSELEQL 823
Cdd:PRK02224 190 DQLKAQIEEKEEK--DLHERLNGLESELAELDEEIERYEEQREQARETRDEAD----EVLEEHEERREELETLEAEIEDL 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 824 KSNLTVMETKLKEREEREQQLTEAKVKLENDIAEIMKSSGDSSA----------QLMKMNDELRlkeRQLEQIQLELTKA 893
Cdd:PRK02224 264 RETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDAdaeavearreELEDRDEELR---DRLEECRVAAQAH 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 894 NEKAVQLQKNVEQTAQKAEQSQQE------TLKTHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEK----------- 956
Cdd:PRK02224 341 NEEAESLREDADDLEERAEELREEaaelesELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNaedfleelree 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 957 --ETSEMITKHDADIKGFKQNLLDAEEALKA---------------------AQKKNDELETQAEELKKQAEQ------- 1006
Cdd:PRK02224 421 rdELREREAELEATLRTARERVEEAEALLEAgkcpecgqpvegsphvetieeDRERVEELEAELEDLEEEVEEveerler 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1007 ----AKADKRAEEVLQTMEKVTK---EKDAIHQEKIETLASLensRQTNEKLQNELDMLKQNNLKNEEELTKSKELLNLE 1079
Cdd:PRK02224 501 aedlVEAEDRIERLEERREDLEEliaERRETIEEKRERAEEL---RERAAELEAEAEEKREAAAEAEEEAEEAREEVAEL 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1080 NKKVEELKKEFEALklaaaqksQQLAALQEENVKLAEELGRSRDEVTSHQKLEEERsvlNNQLLEMKKRESTLKKEIDEE 1159
Cdd:PRK02224 578 NSKLAELKERIESL--------ERIRTLLAAIADAEDEIERLREKREALAELNDER---RERLAEKRERKRELEAEFDEA 646
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024359659 1160 R--------ASLQKSISDTSALITQKDEELEKLRNEITVLRGENASAKTLQSVVKTLESDKLKLE 1216
Cdd:PRK02224 647 RieearedkERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRVEALE 711
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
360-1071 |
5.22e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 70.94 E-value: 5.22e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 360 EKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALVRDGHDRHVLEMEAKMDQLRAMVEAADREKVELLNQLEEEKRKV 439
Cdd:PTZ00121 1287 EEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKA 1366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 440 EDLQFRVEEESITKGDLERKRQISEDPENTQTKLEHarikeleqsllfEKTKADKLQRELEDTRVATVSEKSrimelerd 519
Cdd:PTZ00121 1367 EAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEE------------DKKKADELKKAAAAKKKADEAKKK-------- 1426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 520 lALRVKEVAELRGRLESSKHIDDVDTSLSLLQEISSLQEKmaaagKEHQREMSSLKEKFESSEEAlrkeiktlsasnERM 599
Cdd:PTZ00121 1427 -AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKK-----AEEAKKADEAKKKAEEAKKA------------DEA 1488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 600 GKENESLKTKLDHANKENsdviELWKSKLESAIASHQQAMEELKvsfnKGVGAQTAEfaELKTQMEKVKLDYENEMSNLK 679
Cdd:PTZ00121 1489 KKKAEEAKKKADEAKKAA----EAKKKADEAKKAEEAKKADEAK----KAEEAKKAD--EAKKAEEKKKADELKKAEELK 1558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 680 LKQENEKSQHLKEIEALKAKLLEVTEEKEQTLENLKAKLESVEDQHLVEMEDTLNKLQEAEIKVSNLTKELQGKeQKLLD 759
Cdd:PTZ00121 1559 KAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEK-KKVEQ 1637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 760 LEKNLSAVNQVKDSLEKELQLLKEKFTSAVDGAENAQRAMQETinklnQKEEQFALMSSELEQLKSNLTVMETKLKEREE 839
Cdd:PTZ00121 1638 LKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEA-----KKAEEDEKKAAEALKKEAEEAKKAEELKKKEA 1712
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 840 REQQLTEAKVKLENDIAEIMKSSGDSSAQLMKMNDELRLKERQLEQIQLELTKANEKAVQLQKNVEQTAQkaEQSQQETL 919
Cdd:PTZ00121 1713 EEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIE--EELDEEDE 1790
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 920 KTHQEELKKMQDQLTDMKKQMETsqNQYKDLQAKYEKETSEMITKHDADIKGFKQNLLDAEEALKaAQKKNDELETQAEE 999
Cdd:PTZ00121 1791 KRRMEVDKKIKDIFDNFANIIEG--GKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHK-FNKNNENGEDGNKE 1867
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024359659 1000 LKKQAEQAKADKRAEEVLQTMEKVTKEKDAIHQEKIETLASLENSRQTNEKLQNElDMLKQNNLKNEEELTK 1071
Cdd:PTZ00121 1868 ADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREIPNNNMAGKNNDIIDDKLDKD-EYIKRDAEETREEIIK 1938
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
722-1259 |
1.53e-11 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 69.43 E-value: 1.53e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 722 EDQHLVEMEDTLNKLQEAEIKVSNLTKELQGKEQKLLDlEKnlsavNQVKDSLEKELQLLKEKFTSAVDGAENAQR---A 798
Cdd:pfam01576 3 QEEEMQAKEEELQKVKERQQKAESELKELEKKHQQLCE-EK-----NALQEQLQAETELCAEAEEMRARLAARKQEleeI 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 799 MQETINKLNQKEEQFALMSSELEQLKSNLTVMETKLKEREEREQQLTEAKVKLENDIAEIMKSSGDSSAQLMKMNDELRL 878
Cdd:pfam01576 77 LHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 879 KERQLEQIQLELTKANEKAVQLQK----------NVEQTAQKAEQSQQETLKTHqeelKKMQDQLTDMKKQMETSQNQYK 948
Cdd:pfam01576 157 LEERISEFTSNLAEEEEKAKSLSKlknkheamisDLEERLKKEEKGRQELEKAK----RKLEGESTDLQEQIAELQAQIA 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 949 DLQAKYEKETSEMITkhdadikgfKQNLLDAEEALK-AAQKKNDELETQAEELKKQAEQAKADKRAEEvlQTMEKVTKEK 1027
Cdd:pfam01576 233 ELRAQLAKKEEELQA---------ALARLEEETAQKnNALKKIRELEAQISELQEDLESERAARNKAE--KQRRDLGEEL 301
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1028 DAIHQEKIETLASLENSRQTNEKLQNELDMLKqnnlKNEEELTKS-----KELLNLENKKVEELKKEFEALKLAAAQKSQ 1102
Cdd:pfam01576 302 EALKTELEDTLDTTAAQQELRSKREQEVTELK----KALEEETRSheaqlQEMRQKHTQALEELTEQLEQAKRNKANLEK 377
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1103 QLAALQEENVKLAEELgrsRDEVTSHQKLEEERSVLNNQLLEMKKREST---LKKEIDEERASLQKSISDTSALITQKDE 1179
Cdd:pfam01576 378 AKQALESENAELQAEL---RTLQQAKQDSEHKRKKLEGQLQELQARLSEserQRAELAEKLSKLQSELESVSSLLNEAEG 454
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1180 ELEKLRNEIT-----------VLRGENASAKTLQSVVKTLESDKLKLEEKVKNLEQKLKAKSEQPLTVTSPSGDIAANLL 1248
Cdd:pfam01576 455 KNIKLSKDVSslesqlqdtqeLLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLE 534
|
570
....*....|.
gi 2024359659 1249 QDESAEDKQQE 1259
Cdd:pfam01576 535 EDAGTLEALEE 545
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
652-1187 |
2.53e-11 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 68.40 E-value: 2.53e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 652 AQTAEFAELKTQMEKvkLDYENEMSNLKLKQE--NEKSQHLKEIEALKAKLLEVTEEKEQTLENLKAKLESVEDQHLvem 729
Cdd:COG4913 259 ELAERYAAARERLAE--LEYLRAALRLWFAQRrlELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIR--- 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 730 EDTLNKLQEAEIKVSNLTKELQGKEQKLLDLEKNLSAVNQVKDSLEKELQLLKEKFTSAVDGAENAQRAMQ----ETINK 805
Cdd:COG4913 334 GNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEealaEAEAA 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 806 LNQKEEQFALMSSELEQL---KSNLTVMETKLKEREEREQQLTEAKVKLendIAEIMKSSGDSS---------------- 866
Cdd:COG4913 414 LRDLRRELRELEAEIASLerrKSNIPARLLALRDALAEALGLDEAELPF---VGELIEVRPEEErwrgaiervlggfalt 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 867 --------AQLMKMNDELRLKERqleqIQLELTKANEKAVQLQKNVEQT-AQKAEqsqqetLKTH------QEELKKM-- 929
Cdd:COG4913 491 llvppehyAAALRWVNRLHLRGR----LVYERVRTGLPDPERPRLDPDSlAGKLD------FKPHpfrawlEAELGRRfd 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 930 ------QDQLTDMKKQMeTSQNQYKDLQAKYEKetsemitkhDADIKGFKQNLL--DAEEALKAAQKKNDELETQAEELK 1001
Cdd:COG4913 561 yvcvdsPEELRRHPRAI-TRAGQVKGNGTRHEK---------DDRRRIRSRYVLgfDNRAKLAALEAELAELEEELAEAE 630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1002 KQAEQAKADKRAeevlqtmekVTKEKDAIHQekietLASLENSRQTNEKLQNELdmlkqnnlkneEELTKSKELLNLENK 1081
Cdd:COG4913 631 ERLEALEAELDA---------LQERREALQR-----LAEYSWDEIDVASAEREI-----------AELEAELERLDASSD 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1082 KVEELKKEFEALKLAAAQKSQQLAALQEENVKLAEELGRSRDEVTSHQKLEEERSVLN----NQLLEMKKRESTLKKEID 1157
Cdd:COG4913 686 DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLArlelRALLEERFAAALGDAVER 765
|
570 580 590
....*....|....*....|....*....|
gi 2024359659 1158 EERASLQKSISDTSALITQKDEELEKLRNE 1187
Cdd:COG4913 766 ELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
406-937 |
2.77e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 68.17 E-value: 2.77e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 406 EMEAKMDQLRAMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLERKRQISEDPENTQTKLEhARIKELEQSL 485
Cdd:PRK03918 190 NIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLE-EKIRELEERI 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 486 LFEKTKADKLQ---RELEDTRvATVSEKSRIMELERDLALRVKEVAELRGRLESskHIDDVDTSLSLLQEISSLQEKMAA 562
Cdd:PRK03918 269 EELKKEIEELEekvKELKELK-EKAEEYIKLSEFYEEYLDELREIEKRLSRLEE--EINGIEERIKELEEKEERLEELKK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 563 AGKEHQREMSSLKEKFESSEEALRKEIKTLSASNERMGKENESLKTKLDHANKENSDV------IELWKSKLESAIASHQ 636
Cdd:PRK03918 346 KLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIeeeiskITARIGELKKEIKELK 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 637 QAMEELKVSFNK-GVGAQTAEFAELKTQMEKVKLDYENEMSNLK--LKQENEKSQHLKEIEALKAKLLEVTEEKE--QTL 711
Cdd:PRK03918 426 KAIEELKKAKGKcPVCGRELTEEHRKELLEEYTAELKRIEKELKeiEEKERKLRKELRELEKVLKKESELIKLKElaEQL 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 712 ENLKAKLESVEDQHLVEMEDTLNKLQEAEIKVSNLTKELQGKEQKLLDLEKNLSAVNQVKDSLEKELQLLKEKFtsavdg 791
Cdd:PRK03918 506 KELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKEL------ 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 792 aenaQRAMQETINKLNQKEEQFALMSSELEQLKSNLTVMETKLKEREEREQQLTEAKVKLENDIAEIMKSSGDSSAQLMK 871
Cdd:PRK03918 580 ----EELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKK 655
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2024359659 872 MNDE-LRLKERQLEQIQLELTKANEKAVQLQKNVEQTAQKAE--QSQQETLKTHQEELKKMQDQLTDMK 937
Cdd:PRK03918 656 YSEEeYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEklKEELEEREKAKKELEKLEKALERVE 724
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
353-1229 |
3.14e-11 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 68.46 E-value: 3.14e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 353 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALVRdgHDRHVLEMEAKMDQLRAMVEAADREKVELLNQL 432
Cdd:pfam02463 186 AELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLD--YLKLNEERIDLLQELLRDEQEEIESSKQEIEKE 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 433 EEEKRKVedLQFRVEEESITKGDLERKRQISEDPENTQTKLEHAriKELEQSLLFEKTKADKLQRELEDTRVATVSEKSR 512
Cdd:pfam02463 264 EEKLAQV--LKENKEEEKEKKLQEEELKLLAKEEEELKSELLKL--ERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEE 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 513 IMELErdlalrvKEVAELRGRLESSKhiddVDTSLSLLQEISSLQEKMAAAGKEHQREMSSLKEKFESSEEALRKEIKTL 592
Cdd:pfam02463 340 LEKEL-------KELEIKREAEEEEE----EELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQ 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 593 SASNERMGKENESLKTKLDHANKENSDVIELWKSKLESAIASHQQAMEELKVSFNKGVgAQTAEFAELKTQMEKVKLDYE 672
Cdd:pfam02463 409 LLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELE-LKKSEDLLKETQLVKLQEQLE 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 673 NEMSNLKLKQENEKSQHLKEIEALKAKLLEVTEEKEQTLENLKAKLESVEDQHLVEMEDTLNKLQEAEIKVSNLTKELQG 752
Cdd:pfam02463 488 LLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLV 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 753 KEQKLLDLEKNlSAVNQVKDSLEKELQLLKEKFTSAVDGAENAQRAMQETINKLNQKEEQFALMSSELEQLKSNLTVMET 832
Cdd:pfam02463 568 RALTELPLGAR-KLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKES 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 833 KLKEREEREQQLTEAKVKlendiaeimkssgdsSAQLMKMNDELRLKERQLEQIQLELTKANEKAVQLQKNVEQTAQKAE 912
Cdd:pfam02463 647 GLRKGVSLEEGLAEKSEV---------------KASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEE 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 913 QSQQETLKTHQEELKKmQDQLTDMKKQMETSQNQYKDLQAKYEKETSemitkhdadikgfKQNLLDAEEALKAAQKKNDE 992
Cdd:pfam02463 712 LKKLKLEAEELLADRV-QEAQDKINEELKLLKQKIDEEEEEEEKSRL-------------KKEEKEEEKSELSLKEKELA 777
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 993 LETQAEELKKQAEQAKADKRAEEVLQTMEKVTKEKDAIHQEKIETLASLENSRQTNEKLQNELD--MLKQNNLKNEEELT 1070
Cdd:pfam02463 778 EEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALElkEEQKLEKLAEEELE 857
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1071 KSKELLNLENKKVEELKKEFEALKLAAAQKSQQLAALQEENVKLAEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKRES 1150
Cdd:pfam02463 858 RLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEP 937
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1151 T-LKKEIDEERASLQKSISDTSALITQKDEELEKLRNEITVLRGENASAKTLQSVVKTLESDKLKLEEKVKNLEQKLKAK 1229
Cdd:pfam02463 938 EeLLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQ 1017
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
358-1160 |
3.14e-11 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 68.46 E-value: 3.14e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 358 LKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALVRDGHDRHVLEMEAKMDQLRAMVEAADREKVELLNQLEEEKR 437
Cdd:pfam02463 200 LKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEK 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 438 KVEDLQFRVEEESITKGDLERKRQISEDPENT---QTKLEHARIKELEQSLLFEKTKADKLQRELEDTRVATVSEKSRIM 514
Cdd:pfam02463 280 EKKLQEEELKLLAKEEEELKSELLKLERRKVDdeeKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 515 ELE-RDLALRVKEVAELRGRLESSKHIDDVDTSLSLLQEISSLQEKMAAAGKEHQREMSSLKEKFESSEEALRKEIKTLS 593
Cdd:pfam02463 360 ELEkLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESI 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 594 ASNERMGKENESLKTKLDHANKENSDVIELWKSKLESAIASHQQAMEELKVSFNKGVGAQTAEFAELKTQMEKVKLDYEN 673
Cdd:pfam02463 440 ELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDG 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 674 EMSNLKLKQENEKSQHLKEIEALKAKLLEVTEEKEQTLENLKAKLESV---------EDQHLVEMEDTLNKLQEAEIKVS 744
Cdd:pfam02463 520 VGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVraltelplgARKLRLLIPKLKLPLKSIAVLEI 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 745 NLTKELQGKEQKLLDLEKNLSAVNQVKDSLE-KELQLLKEKFTSAVDGAENAQRAMQETINKL----NQKEEQFALMSSE 819
Cdd:pfam02463 600 DPILNLAQLDKATLEADEDDKRAKVVEGILKdTELTKLKESAKAKESGLRKGVSLEEGLAEKSevkaSLSELTKELLEIQ 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 820 LEQLKSNLTVMETKLKEREEREQQLTEAKVKLENDIAEIMKSSGDSSAQLMKMNDELRLKERQLEQIQLELTKANEKAVQ 899
Cdd:pfam02463 680 ELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKK 759
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 900 LQKNVEQTAQKAEQSQQETLKTHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEKETSEMITKHDADIKgfkqnlLDA 979
Cdd:pfam02463 760 EEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKI------KEE 833
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 980 EEALKAAQKKNDELETQAEELKKQAEQAKADKRAEEVLQTMEKVTKEKDAIHQEKIETLASLENSRQTNEKLQNELDMLK 1059
Cdd:pfam02463 834 ELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLE 913
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1060 QNNLKNEEELTKSKELLNLENKKVEELKKEFEALKLAAAQKSQQL----AALQEENVKLAEELGRSRDEVTSHQKLEEER 1135
Cdd:pfam02463 914 EKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEeernKRLLLAKEELGKVNLMAIEEFEEKEERYNKD 993
|
810 820
....*....|....*....|....*
gi 2024359659 1136 SVLNNQLLEMKKRESTLKKEIDEER 1160
Cdd:pfam02463 994 ELEKERLEEEKKKLIRAIIEETCQR 1018
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
61-122 |
3.20e-11 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 67.79 E-value: 3.20e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024359659 61 VGERVWVNGNKpGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLRGIFTRP 122
Cdd:COG5244 6 VNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIFIRP 66
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
755-971 |
3.46e-11 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 66.71 E-value: 3.46e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 755 QKLLDLEKNLSAVNQVKDSLEKELQLLKEKFTSAVDGAENAQRAMQETINKLNQKEEQFALMSSELEQLKSNLTVMETKL 834
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 835 KEREEREQQLTEAKVKLENDIAEIMKSSGDSSAQLMKMN--------------DELRLKERQLEQIQLELTKANEKAVQL 900
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLqylkylaparreqaEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024359659 901 QKNVEQ---TAQKAEQSQQETLKTHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEKETSEMITKHDADIKG 971
Cdd:COG4942 180 LAELEEeraALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKG 253
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
685-1313 |
5.92e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.40 E-value: 5.92e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 685 EKSQHLKEIEALKAKLLEVTEEKEQTLE-NLKAKLESVEDqHLVEMEDTLNKLQEAEIKVSNLTKELQGKEQKLLDLEKN 763
Cdd:TIGR02169 195 EKRQQLERLRREREKAERYQALLKEKREyEGYELLKEKEA-LERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQL 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 764 LSAVN-QVKDSLEKELQLLKEKFTSAVDGAENAQRAMQETINKLNQKEEQFALMSSELEQLKSNLTVMETKLKEREEREQ 842
Cdd:TIGR02169 274 LEELNkKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRD 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 843 QLTEAKVKLENDIAEIMKSSGDSSAQLMKMNDELRLKERQLEQ-------IQLELTKANEKAVQLQKNVEQTAQKAEQSQ 915
Cdd:TIGR02169 354 KLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKlkreineLKRELDRLQEELQRLSEELADLNAAIAGIE 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 916 ------QETLKTHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEKETSEmitkhdadIKGFKQNLLDAEEALKAAQKK 989
Cdd:TIGR02169 434 akinelEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKE--------LSKLQRELAEAEAQARASEER 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 990 NDELETQAEELKKQ--------AEQAKADKRAEEVLQT-----MEKVTKEKDAIHQEKIETLASLENSRQT--------- 1047
Cdd:TIGR02169 506 VRGGRAVEEVLKASiqgvhgtvAQLGSVGERYATAIEVaagnrLNNVVVEDDAVAKEAIELLKRRKAGRATflplnkmrd 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1048 -----------------------NEKLQNEL-----DMLKQNNLKNEEELTKSKELLNLENKKVEE---LKKEFEALKLA 1096
Cdd:TIGR02169 586 errdlsilsedgvigfavdlvefDPKYEPAFkyvfgDTLVVEDIEAARRLMGKYRMVTLEGELFEKsgaMTGGSRAPRGG 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1097 AAQKSQQLAALQEenvkLAEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKRESTLKKEIDEERASLQKSISDTSALITQ 1176
Cdd:TIGR02169 666 ILFSRSEPAELQR----LRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEE 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1177 KDEELEKLRNEITVLRGEnasAKTLQSVVKTLESDKLKLEEKVKNLEQKL----------------KAKSEQPLTVTSPS 1240
Cdd:TIGR02169 742 LEEDLSSLEQEIENVKSE---LKELEARIEELEEDLHKLEEALNDLEARLshsripeiqaelskleEEVSRIEARLREIE 818
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024359659 1241 GDIAANLLQDESAEDK----QQEIDFLNSVIVDLQRRNEELNLKIQRMcEAALNGNEEETINYDSEEEGLSKKTPRL 1313
Cdd:TIGR02169 819 QKLNRLTLEKEYLEKEiqelQEQRIDLKEQIKSIEKEIENLNGKKEEL-EEELEELEAALRDLESRLGDLKKERDEL 894
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
661-1210 |
6.64e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 66.99 E-value: 6.64e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 661 KTQMEKVKLDYENEMSNLKLKQENEKSQHLKE-IEALKAKLLEVTEEKE----------QTLENLKAKLESVED--QHLV 727
Cdd:PRK02224 175 RLGVERVLSDQRGSLDQLKAQIEEKEEKDLHErLNGLESELAELDEEIEryeeqreqarETRDEADEVLEEHEErrEELE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 728 EMEDTLNKLQ----EAEIKVSNLTKELQGKEQKLLDLEKNLS--------------AVNQVKDSLEKEL----QLLKEKF 785
Cdd:PRK02224 255 TLEAEIEDLRetiaETEREREELAEEVRDLRERLEELEEERDdllaeaglddadaeAVEARREELEDRDeelrDRLEECR 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 786 TSAVDGAENAQRAmQETINKLnqkEEQFALMSSELEQLKSNLTVMETKLKEREEREQQLTEAKVKLE---NDIAEIMKSS 862
Cdd:PRK02224 335 VAAQAHNEEAESL-REDADDL---EERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRerfGDAPVDLGNA 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 863 GDSSAQLMKMNDELRLKERQLEQIQLELTKANEKAVQLQK---------------NVEQTAQKAEQ-----SQQETLKTH 922
Cdd:PRK02224 411 EDFLEELREERDELREREAELEATLRTARERVEEAEALLEagkcpecgqpvegspHVETIEEDRERveeleAELEDLEEE 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 923 QEELKKMQDQLTDMKK---QMETSQNQYKDLQakyeketsEMITKHDADIKgfkqnllDAEEALKAAQKKNDELETQAEE 999
Cdd:PRK02224 491 VEEVEERLERAEDLVEaedRIERLEERREDLE--------ELIAERRETIE-------EKRERAEELRERAAELEAEAEE 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1000 lkKQAEQAKADKRAEEVLQTMEKVTKEKDAIhQEKIETLASLENSRQTNEKLQNELDMLKQNNLKNEEELTKSKELLNLE 1079
Cdd:PRK02224 556 --KREAAAEAEEEAEEAREEVAELNSKLAEL-KERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEK 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1080 NKKVEELKKEFEALKLAAAQKSQQLAALQEENVklAEELgrsrdevtshqkleeersvlnnqllemkkrestlkKEIDEE 1159
Cdd:PRK02224 633 RERKRELEAEFDEARIEEAREDKERAEEYLEQV--EEKL-----------------------------------DELREE 675
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 2024359659 1160 RASLQKSIsdtsALITQKDEELEKLRNEITVLRGENASAKTLQSVVKTLES 1210
Cdd:PRK02224 676 RDDLQAEI----GAVENELEELEELRERREALENRVEALEALYDEAEELES 722
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
917-1232 |
1.18e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 66.24 E-value: 1.18e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 917 ETLKTHQEELKKMQDQLTDMKKQMETSQNQ------YKDLQAKyeketsemitKHDADIKGFKQNLLDAEEALKAAQKKN 990
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQLERLRRErekaerYQALLKE----------KREYEGYELLKEKEALERQKEAIERQL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 991 DELETQAEELKKQAEQ------AKADKRAEEVLQTMEKVTKEKDAIHQEKIETLASLENSRQTNEKLQNELDMLKQNNLK 1064
Cdd:TIGR02169 247 ASLEEELEKLTEEISElekrleEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAK 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1065 NEEELTKSKELLNLENKKVEELKKEFEALKLAAAQKSQQLAAL----QEENVKLAEELGRSRDEVTSHQKLEEERsvlnN 1140
Cdd:TIGR02169 327 LEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLraelEEVDKEFAETRDELKDYREKLEKLKREI----N 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1141 QLLEMKKRESTLKKEIDEERASLQKSISDTSALITQKDEELEKLRNEITVLRGEnasAKTLQSVVKTLESDKLKLEEKVK 1220
Cdd:TIGR02169 403 ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWK---LEQLAADLSKYEQELYDLKEEYD 479
|
330
....*....|..
gi 2024359659 1221 NLEQKLKAKSEQ 1232
Cdd:TIGR02169 480 RVEKELSKLQRE 491
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
615-1139 |
3.02e-10 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 65.46 E-value: 3.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 615 KENSDVIELWKSKLESAIASHQQAMEELKVSFN----KGVGAQTAEFAELKTQMEKVKLDYenemsNLKLKQENEKSQHL 690
Cdd:TIGR01612 503 KDFKDIIDFMELYKPDEVPSKNIIGFDIDQNIKaklyKEIEAGLKESYELAKNWKKLIHEI-----KKELEEENEDSIHL 577
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 691 -KEIEALKAKLLEVTEE----KEQTLEnLKAKLESVEDQH-LVEMEDTLNKLQE---------AEIKVSNLTKELQGKEQ 755
Cdd:TIGR01612 578 eKEIKDLFDKYLEIDDEiiyiNKLKLE-LKEKIKNISDKNeYIKKAIDLKKIIEnnnayidelAKISPYQVPEHLKNKDK 656
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 756 KLLDLEKNLSAVNQVK-DSLEKEL-QLLKEkftSAVDGAENAQRA--MQETINKLNQKeeqfaLMSSELEQLKSNLTVME 831
Cdd:TIGR01612 657 IYSTIKSELSKIYEDDiDALYNELsSIVKE---NAIDNTEDKAKLddLKSKIDKEYDK-----IQNMETATVELHLSNIE 728
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 832 TKlkereereqqlteaKVKLENDIAEIMKS-SGDSSAQLMKMNDELRLKERQL---------EQIQLELTKANEKAVQLQ 901
Cdd:TIGR01612 729 NK--------------KNELLDIIVEIKKHiHGEINKDLNKILEDFKNKEKELsnkindyakEKDELNKYKSKISEIKNH 794
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 902 KN---------VEQTAQKAEQSQQ--ETLKTHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEKETSEMITKHDADIK 970
Cdd:TIGR01612 795 YNdqinidnikDEDAKQNYDKSKEyiKTISIKEDEIFKIINEMKFMKDDFLNKVDKFINFENNCKEKIDSEHEQFAELTN 874
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 971 GFKQNLLDaeEALKAAQKKNDELETQAEELKKQAEQAKAD----KRAEEVLQTMEKVTkekdaihqEKIETLASLENsrQ 1046
Cdd:TIGR01612 875 KIKAEISD--DKLNDYEKKFNDSKSLINEINKSIEEEYQNintlKKVDEYIKICENTK--------ESIEKFHNKQN--I 942
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1047 TNEKLQNELDMLKQNNLKneeELTKSKELLNLENKKVEELKKEFEALKLAAAQKSQQlaALQEENVKLAEELGRSRDEVT 1126
Cdd:TIGR01612 943 LKEILNKNIDTIKESNLI---EKSYKDKFDNTLIDKINELDKAFKDASLNDYEAKNN--ELIKYFNDLKANLGKNKENML 1017
|
570
....*....|...
gi 2024359659 1127 SHQKLEEERSVLN 1139
Cdd:TIGR01612 1018 YHQFDEKEKATND 1030
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
699-1156 |
3.13e-10 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 64.47 E-value: 3.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 699 KLLEVTEEKEQTLENLKA--KLESVEDQHLV-EMEDTLNKLQEAEIKVSNltKELQGKEQKLLDLEKNLSAVNQVKdsle 775
Cdd:PRK04778 29 KRIDELEERKQELENLPVndELEKVKKLNLTgQSEEKFEEWRQKWDEIVT--NSLPDIEEQLFEAEELNDKFRFRK---- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 776 kelqllkekftsavdgaenAQRAMQETINKLNQKEEQFALMSSELEQLKSNltvmetklkereerEQQLTEAKVKLENDI 855
Cdd:PRK04778 103 -------------------AKHEINEIESLLDLIEEDIEQILEELQELLES--------------EEKNREEVEQLKDLY 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 856 AEIMKSSGDSSAQLMKMNDELrlkERQLEQIQLELTKANEkavqlqknveqtaqkaEQSQQETLKTHqEELKKMQDQLTD 935
Cdd:PRK04778 150 RELRKSLLANRFSFGPALDEL---EKQLENLEEEFSQFVE----------------LTESGDYVEAR-EILDQLEEELAA 209
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 936 MKKQMETSQNQYKDLQAKYEKETSEMITKHDADI-KGFKQNLLDAEEALKAAQKKNDELETQAEELK-KQAEQA--KADK 1011
Cdd:PRK04778 210 LEQIMEEIPELLKELQTELPDQLQELKAGYRELVeEGYHLDHLDIEKEIQDLKEQIDENLALLEELDlDEAEEKneEIQE 289
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1012 RAEEVLQTMEKVTKEKDAIHQEKIETLASLENSRQTNEKLQNELDMLKQNNLKNEEELTKSKELlnleNKKVEELKKEFE 1091
Cdd:PRK04778 290 RIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQL----EKQLESLEKQYD 365
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2024359659 1092 ALKLAAAQKSQ---QLAALQEENVKLAEELGRSRDEVTSH-QKLEEERSVLNNQLLEMKKRESTLKKEI 1156
Cdd:PRK04778 366 EITERIAEQEIaysELQEELEEILKQLEEIEKEQEKLSEMlQGLRKDELEAREKLERYRNKLHEIKRYL 434
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
653-1284 |
3.16e-10 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 65.07 E-value: 3.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 653 QTAEFAELKTQMEKVKLDY-----ENEMSNLKLKQENEKSQHLKEI----EALKAKLLEVTEEKEQTLENLKAKLESVED 723
Cdd:TIGR00606 180 SATRYIKALETLRQVRQTQgqkvqEHQMELKYLKQYKEKACEIRDQitskEAQLESSREIVKSYENELDPLKNRLKEIEH 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 724 Q--HLVEMEDTLNKLQEAEIKVSNLTKELQGKEQKlldleknlsavnqVKDSLEKELQLLKEKFTSAVDGAENAQRAMQE 801
Cdd:TIGR00606 260 NlsKIMKLDNEIKALKSRKKQMEKDNSELELKMEK-------------VFQGTDEQLNDLYHNHQRTVREKERELVDCQR 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 802 TINKLNQKEEQFALMSSELEQLKSNLTVMETKLKER-EEREQQLTEAKVKLEND------------------IAEIMKSS 862
Cdd:TIGR00606 327 ELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHiRARDSLIQSLATRLELDgfergpfserqiknfhtlVIERQEDE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 863 GDSSAQLM-KMNDELRLKERQLEQIQLELTKAN----------EKAVQLQKNVEQTAQKAEQSQQETLKTHQEELKKMQD 931
Cdd:TIGR00606 407 AKTAAQLCaDLQSKERLKQEQADEIRDEKKGLGrtielkkeilEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERE 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 932 -------QLTDMKKQMETS-QNQYKDLQAKYEKETSEMITKhDADIKGFKQNLLDAEEALKAAQKKNDELETQAEELKKQ 1003
Cdd:TIGR00606 487 lskaeknSLTETLKKEVKSlQNEKADLDRKLRKLDQEMEQL-NHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSL 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1004 AEQAKADKRAEEvlqTMEKVTKEKDAIHQEKIETLASLENSRQTNEKLQNELDMLKQNNLKNEEEL----TKSKELLNLE 1079
Cdd:TIGR00606 566 LGYFPNKKQLED---WLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLfdvcGSQDEESDLE 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1080 N--KKVEELKKEFEALKLAAAQKSQQL---------------------AALQEENVKLAEELGRSRDEVTSHQKL---EE 1133
Cdd:TIGR00606 643 RlkEEIEKSSKQRAMLAGATAVYSQFItqltdenqsccpvcqrvfqteAELQEFISDLQSKLRLAPDKLKSTESElkkKE 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1134 ERSVLNNQLLEMKKRESTLK-KEIDEERASLQKSISDtsalITQKDEELEKLRNEITVLRGENASAKTLQSVVKTLESDK 1212
Cdd:TIGR00606 723 KRRDEMLGLAPGRQSIIDLKeKEIPELRNKLQKVNRD----IQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQ 798
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024359659 1213 LKLEEKVKNLEQkLKAKSEqpltvtSPSGDIAANLLQDEsAEDKQQEIDFLNSVIVDLQRRNEELNLKIQRM 1284
Cdd:TIGR00606 799 MELKDVERKIAQ-QAAKLQ------GSDLDRTVQQVNQE-KQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
820-1227 |
3.63e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 64.70 E-value: 3.63e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 820 LEQLKSNLTVMETKLKEREEREQQLTEAKVKLENDIAEIMKSSGDSSAQLMKMNDELRLKERQLEQIQLELTKANEKAVQ 899
Cdd:PRK03918 160 YENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 900 LQKnveqtAQKAEQSQQETLKTHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEKET-----SEMITKHDADIKGFKQ 974
Cdd:PRK03918 240 IEE-----LEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEeyiklSEFYEEYLDELREIEK 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 975 NLLDAEEALKAAQKKNDELETQAEELKKQAEQAKADKRAEEVLQTMEKVTKEKDAIHQEKIETLASLENsrQTNEKLQNE 1054
Cdd:PRK03918 315 RLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTG--LTPEKLEKE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1055 LDMLKQNNLKNEEELTKSKELLNLENKKVEELKKEFEALKLAAAQKSQQLAALQEEN-----VKLAEELGRSRDEVtshQ 1129
Cdd:PRK03918 393 LEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHrkellEEYTAELKRIEKEL---K 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1130 KLEEERSVLNNQLLEMKK-----RESTLKKEIDEERASLQKSISDTSA-LITQKDEELEKLRNEITVLRGENASAKTLQS 1203
Cdd:PRK03918 470 EIEEKERKLRKELRELEKvlkkeSELIKLKELAEQLKELEEKLKKYNLeELEKKAEEYEKLKEKLIKLKGEIKSLKKELE 549
|
410 420
....*....|....*....|....
gi 2024359659 1204 VVKTLESDKLKLEEKVKNLEQKLK 1227
Cdd:PRK03918 550 KLEELKKKLAELEKKLDELEEELA 573
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
834-1225 |
4.02e-10 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 64.40 E-value: 4.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 834 LKEREEREQQLTEAKVKLENDIAEImkssgdssAQLMKMNDELRLKERQLEQIQLELTKAnEKAVQLQKNVEQTAQ---- 909
Cdd:COG4717 70 LKELKELEEELKEAEEKEEEYAELQ--------EELEELEEELEELEAELEELREELEKL-EKLLQLLPLYQELEAleae 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 910 -KAEQSQQETLKTHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEKETSEMITKHDADIKGFKQNLLDAEEALKAAQK 988
Cdd:COG4717 141 lAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQE 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 989 KNDELETQAEELKKQAEQAKADKRAEEVLQT--------------------------------------MEKVTKEKDAI 1030
Cdd:COG4717 221 ELEELEEELEQLENELEAAALEERLKEARLLlliaaallallglggsllsliltiagvlflvlgllallFLLLAREKASL 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1031 HQEKIETLASLENSRQTNEKLQNELDMLKQNNLKNEEELTKSKELLNLENKKVEELKKEFEALKLAAAQKSQQlAALQEE 1110
Cdd:COG4717 301 GKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIA-ALLAEA 379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1111 NVKLAEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKRESTLKKEIDEERasLQKSISDTSALITQKDEELEKLRNEITV 1190
Cdd:COG4717 380 GVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEE--LEEELEELEEELEELEEELEELREELAE 457
|
410 420 430
....*....|....*....|....*....|....*
gi 2024359659 1191 LRGENASAKTLQSVVKtLESDKLKLEEKVKNLEQK 1225
Cdd:COG4717 458 LEAELEQLEEDGELAE-LLQELEELKAELRELAEE 491
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
655-1286 |
4.83e-10 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 63.99 E-value: 4.83e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 655 AEFAELKTQMEKVKldyeNEMSNLKLKQENEKSQHLKEIEALKAKLlEVTEEKEQTLENLKAKLESVEDQHLVEMEDTLN 734
Cdd:pfam05557 2 AELIESKARLSQLQ----NEKKQMELEHKRARIELEKKASALKRQL-DRESDRNQELQKRIRLLEKREAEAEEALREQAE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 735 KLQEAEIKVSNLTKELQGKEQKLLDLeknlsavNQVKDSLEKELQLLKEKftsavdgAENAQRAMQETINKLNQKEEQFA 814
Cdd:pfam05557 77 LNRLKKKYLEALNKKLNEKESQLADA-------REVISCLKNELSELRRQ-------IQRAELELQSTNSELEELQERLD 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 815 LMS---SELEQLKSNLTVMETKLKEREEREQQLtEAKVKLENDIAEIMKssgDSSAQLMKMNDELRLKERQLEQI-QLEL 890
Cdd:pfam05557 143 LLKakaSEAEQLRQNLEKQQSSLAEAEQRIKEL-EFEIQSQEQDSEIVK---NSKSELARIPELEKELERLREHNkHLNE 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 891 TKANEKAVQLQKNVEQTAQKAEQSQQETLKTHQEELKKMQDQLTDMKK----------QMETSQNQYKDLQAKyEKETSE 960
Cdd:pfam05557 219 NIENKLLLKEEVEDLKRKLEREEKYREEAATLELEKEKLEQELQSWVKlaqdtglnlrSPEDLSRRIEQLQQR-EIVLKE 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 961 MITKHDADIKGFKQNLLDAEEALKAAQKKNDELETQAEELKKQAEQAKADKRAeevlqtmekVTKEKDAIHQekietlaS 1040
Cdd:pfam05557 298 ENSSLTSSARQLEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLL---------LTKERDGYRA-------I 361
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1041 LENSrqTNEKLQNELDMLKQNNLKNEEELTKSKELLNLENK-KVEELKKEFEALKLAAAQKSQQLAALQEENvkLAEELG 1119
Cdd:pfam05557 362 LESY--DKELTMSNYSPQLLERIEEAEDMTQKMQAHNEEMEaQLSVAEEELGGYKQQAQTLERELQALRQQE--SLADPS 437
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1120 RSRDEVTS----HQKLEEERSVL--NNQLLEMKKRESTLKKEIDEERAS-LQKSISDTSALITQKDEELEKLRNEITVLR 1192
Cdd:pfam05557 438 YSKEEVDSlrrkLETLELERQRLreQKNELEMELERRCLQGDYDPKKTKvLHLSMNPAAEAYQQRKNQLEKLQAEIERLK 517
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1193 GENasaktlqsvvktlesdklkleekvknleQKLKAKSEQPLTVTSPSGDIAanllqdesaedkqqeidflNSVIVDLQR 1272
Cdd:pfam05557 518 RLL----------------------------KKLEDDLEQVLRLPETTSTMN-------------------FKEVLDLRK 550
|
650
....*....|....
gi 2024359659 1273 RNEELNLKIQRMCE 1286
Cdd:pfam05557 551 ELESAELKNQRLKE 564
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
760-955 |
4.90e-10 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 64.27 E-value: 4.90e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 760 LEKNLSAVNQVKDSLEKELQLLKEKftsaVDGAENAQRAMQETiNKLNQKEEQFALMSSELEQLKSNLTVMETKLKEREE 839
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKE----LEEAEAALEEFRQK-NGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 840 REQQLTEAKVKLENDIAEIMkssgdSSAQLMKMNDELRLKERQLEQIQLELTKANEKAVQLQKNVE-------------- 905
Cdd:COG3206 241 RLAALRAQLGSGPDALPELL-----QSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAalraqlqqeaqril 315
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 906 -------QTAQKAEQSQQETLKTHQEELKKM---QDQLTDMKKQMETSQNQYKDLQAKYE 955
Cdd:COG3206 316 asleaelEALQAREASLQAQLAQLEARLAELpelEAELRRLEREVEVARELYESLLQRLE 375
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
353-952 |
5.14e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 64.29 E-value: 5.14e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 353 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELAlvrdghdrHVLEMEAKMDQLRAMVEAADREKVELLNQL 432
Cdd:PRK02224 210 GLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERRE--------ELETLEAEIEDLRETIAETEREREELAEEV 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 433 EEEKRKVEDLQfrvEEESITKGDLERKRQISEDPEntqtklehARIKELEqsllfekTKADKLQRELEDTRV---ATVSE 509
Cdd:PRK02224 282 RDLRERLEELE---EERDDLLAEAGLDDADAEAVE--------ARREELE-------DRDEELRDRLEECRVaaqAHNEE 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 510 KSRIMELERDLALRVKEVAELRGRLESskhiddvdtslsllqEISSLQEKMaaagkehqremsslkEKFESSEEALRKEI 589
Cdd:PRK02224 344 AESLREDADDLEERAEELREEAAELES---------------ELEEAREAV---------------EDRREEIEELEEEI 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 590 KTLSASNERMGKENESLKTKLDHANKENSDVIELWKSkLESAIASHQQAMEELKVSFNKGVGAQTAefaelktqmekvkl 669
Cdd:PRK02224 394 EELRERFGDAPVDLGNAEDFLEELREERDELREREAE-LEATLRTARERVEEAEALLEAGKCPECG-------------- 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 670 dyenemsnlklkQENEKSQHLKEIEALKAKLLEVTEEKEQ---TLENLKAKLESVEDqhLVEMEDTLNKLQEaeiKVSNL 746
Cdd:PRK02224 459 ------------QPVEGSPHVETIEEDRERVEELEAELEDleeEVEEVEERLERAED--LVEAEDRIERLEE---RREDL 521
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 747 TKELQGKEQKLLDLEKNLSAVNQVKDSLEKELQllkEKFTSAVDGAENAQRAmQETINKLNQKEEQFALMSSELEQLKSN 826
Cdd:PRK02224 522 EELIAERRETIEEKRERAEELRERAAELEAEAE---EKREAAAEAEEEAEEA-REEVAELNSKLAELKERIESLERIRTL 597
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 827 LTVMETKLKEREEREQQLtEAKVKLENDIAEIMKSSGDSSAQLMKMNDELRLKERQ---------LEQIQLELTKANEKA 897
Cdd:PRK02224 598 LAAIADAEDEIERLREKR-EALAELNDERRERLAEKRERKRELEAEFDEARIEEARedkeraeeyLEQVEEKLDELREER 676
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 2024359659 898 VQLQKNVeqTAQKAEQSQQETLKTHQEELKKMQDQLTDMKKQMETSQNQYKDLQA 952
Cdd:PRK02224 677 DDLQAEI--GAVENELEELEELRERREALENRVEALEALYDEAEELESMYGDLRA 729
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
352-857 |
7.64e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.80 E-value: 7.64e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 352 TALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALVRdghdRHVLEMEAKMDQLRAMVEAADREKVELLNQ 431
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELE----EELEELEEELEELEEELEEAEEELEEAEAE 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 432 LEEEKRKVEDLQFRVEEESitkGDLERKRQISEDPENTQTKLEhARIKELEQSLLFEKTKADKLQRELEDTRVATVSEKS 511
Cdd:COG1196 360 LAEAEEALLEAEAELAEAE---EELEELAEELLEALRAAAELA-AQLEELEEAEEALLERLERLEEELEELEEALAELEE 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 512 RIMELERDLALRVKEVAElrgrlesskhiddvdtslsLLQEISSLQEKMAAAGKEHQREMSSLKEKFESSEEALRKEIKT 591
Cdd:COG1196 436 EEEEEEEALEEAAEEEAE-------------------LEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLL 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 592 LSASNERMGKENESLKTKLDHANKENS---DVIELWKSKLESAIASHQQAMEELKVSFNKGVGAQTAEFAeLKTQMEKVK 668
Cdd:COG1196 497 LEAEADYEGFLEGVKAALLLAGLRGLAgavAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYL-KAAKAGRAT 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 669 LDYENEMSNLKLKQENEKSQHLKEIEALKAKLLEVTEEKEQTLENlkAKLESVEDQHLVEMEDTLNKLQEAEIKVsnLTK 748
Cdd:COG1196 576 FLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGD--TLLGRTLVAARLEAALRRAVTLAGRLRE--VTL 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 749 ELQGKEQKLLDLEKNLSAVNQVKDSLEKELQLLKEKFTSAVDGAENAQRAMQETINKLNQKEEQFALMSSELEQLKSNLT 828
Cdd:COG1196 652 EGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLE 731
|
490 500
....*....|....*....|....*....
gi 2024359659 829 VMETKLKEREEREQQLTEAKVKLENDIAE 857
Cdd:COG1196 732 AEREELLEELLEEEELLEEEALEELPEPP 760
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
475-1187 |
8.46e-10 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 63.30 E-value: 8.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 475 HARIKELEQSLlfektkaDKLQRELEDTRVATVSEKSRIM-----ELERDLALRVKEVAELRGRLESSKHIDDVDTSLSL 549
Cdd:pfam10174 2 QAQLRDLQREN-------ELLRRELDIKESKLGSSMNSIKtfwspELKKERALRKEEAARISVLKEQYRVTQEENQHLQL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 550 lqEISSLQEKMAAagkehQREMSSL-----------KEKFESSEEALRKEIKTLSASNERMGKENESLKTKLDHANKEns 618
Cdd:pfam10174 75 --TIQALQDELRA-----QRDLNQLlqqdfttspvdGEDKFSTPELTEENFRRLQSEHERQAKELFLLRKTLEEMELR-- 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 619 dvIELWKSKLESAIASHQQAMEELK--------VSFNKGVGAQTAEFAELKTQMEKVKLDYENEMSNLK--LKQENEKSQ 688
Cdd:pfam10174 146 --IETQKQTLGARDESIKKLLEMLQskglpkksGEEDWERTRRIAEAEMQLGHLEVLLDQKEKENIHLReeLHRRNQLQP 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 689 HLKEIEALKaKLLEVTEEKEQTLE----NLKAKLESVEDQHLVEMEDTLNKLQEAEI----------KVSNLTKELQGKE 754
Cdd:pfam10174 224 DPAKTKALQ-TVIEMKDTKISSLErnirDLEDEVQMLKTNGLLHTEDREEEIKQMEVykshskfmknKIDQLKQELSKKE 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 755 QKLLDLEKNLSAVNQVKDSLEKELQLLKEKftsavdgaenaqramqetinkLNQKEEQFALMSSELEQLKSNLTVMETKL 834
Cdd:pfam10174 303 SELLALQTKLETLTNQNSDCKQHIEVLKES---------------------LTAKEQRAAILQTEVDALRLRLEEKESFL 361
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 835 KEREEREQQLTEAKVKLENDIAEimkssgdssaqlmkMNDELRLKERQLEQIQLELTKANEkavQLQKNVEQTAQKAE-- 912
Cdd:pfam10174 362 NKKTKQLQDLTEEKSTLAGEIRD--------------LKDMLDVKERKINVLQKKIENLQE---QLRDKDKQLAGLKErv 424
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 913 QSQQETLKTHQEELKKMQDQLTDMKKQMETSQNQyKDLQAKYEKETSEmitkhdadikGFKQNLLDAEEALKAAQKKNDE 992
Cdd:pfam10174 425 KSLQTDSSNTDTALTTLEEALSEKERIIERLKEQ-REREDRERLEELE----------SLKKENKDLKEKVSALQPELTE 493
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 993 LETQAEELKKQAE-QAKADKRAEEVLQTME---KVTKEKDAIHQEKIETLASLENSRQTNEKLQNELDMLKQNNLKNEEE 1068
Cdd:pfam10174 494 KESSLIDLKEHASsLASSGLKKDSKLKSLEiavEQKKEECSKLENQLKKAHNAEEAVRTNPEINDRIRLLEQEVARYKEE 573
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1069 LTKSKELL--------------NLENKKVEELKKEFEALKLAAAQKSQQLAALQ-EENVKLAEELGRSRDEvtshqKLEE 1133
Cdd:pfam10174 574 SGKAQAEVerllgilrevenekNDKDKKIAELESLTLRQMKEQNKKVANIKHGQqEMKKKGAQLLEEARRR-----EDNL 648
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....
gi 2024359659 1134 ERSVLNNQLLEMKKRESTLKKEIDEERASLqksiSDTSALITQKDEELEKLRNE 1187
Cdd:pfam10174 649 ADNSQQLQLEELMGALEKTRQELDATKARL----SSTQQSLAEKDGHLTNLRAE 698
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
828-1234 |
8.88e-10 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 63.70 E-value: 8.88e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 828 TVMETKLKEREEREQQLTEAKVKLENDIAEIMKSSGDSSAQLMKMNDELRLKERQLEQ----IQLELTKANEKAVQLQKN 903
Cdd:pfam12128 244 TKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEkrdeLNGELSAADAAVAKDRSE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 904 VEQTAQKAEQSQQ---ETLKTHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEKETSEMITKHDADIKGFKQNLLDA- 979
Cdd:pfam12128 324 LEALEDQHGAFLDadiETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIr 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 980 EEALKAAQKKNDELETQAEELKKQAEQAKADKRaEEVLQTMEKVTKEKDAIHQEKI--ETLASLENSRQTNEKLQNELDM 1057
Cdd:pfam12128 404 EARDRQLAVAEDDLQALESELREQLEAGKLEFN-EEEYRLKSRLGELKLRLNQATAtpELLLQLENFDERIERAREEQEA 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1058 LKQNNLKNEEELTKSK-------ELLNLENKKVEELKKEFEALKLAAAQKSQQL-------AALQEENV-KLA--EELGR 1120
Cdd:pfam12128 483 ANAEVERLQSELRQARkrrdqasEALRQASRRLEERQSALDELELQLFPQAGTLlhflrkeAPDWEQSIgKVIspELLHR 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1121 SR-DEVTSHQKLEEERSV--LNNQLLEMKKREST-LKKEIDEERASLQKSISDTSALITQKDEELEKLRNEITVL-RGEN 1195
Cdd:pfam12128 563 TDlDPEVWDGSVGGELNLygVKLDLKRIDVPEWAaSEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKAsREET 642
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 2024359659 1196 ASAKTLQSVVKTL-------ESDKLKLEEKVKNlEQKLKAKSEQPL 1234
Cdd:pfam12128 643 FARTALKNARLDLrrlfdekQSEKDKKNKALAE-RKDSANERLNSL 687
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
694-1213 |
1.01e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 62.86 E-value: 1.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 694 EALKAKLLEVTEEKEQTLENLKAKLESVEDQHLVEMEDTLNKLQEAEIKVSNLTKELQGKEQKLLDLEKNLSAVNQVKDS 773
Cdd:COG4717 41 AFIRAMLLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEK 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 774 LEKELQLlkekftsavdgaenaqramQETINKLNQKEEQFALMSSELEQLKSNLTVMETKLKEREEREQQLTEAKVKLEn 853
Cdd:COG4717 121 LEKLLQL-------------------LPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELE- 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 854 diaeimkssgdssaqlmkmndelRLKERQLEQIQLELTKANEKAVQLQKNVEQtAQKAEQSQQETLKTHQEELKKMQDQL 933
Cdd:COG4717 181 -----------------------ELLEQLSLATEEELQDLAEELEELQQRLAE-LEEELEEAQEELEELEEELEQLENEL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 934 TDMKKQMETSQNQYK----------DLQAKYEKETSEMITKHDADIKG--------FKQNLLDAEEALKAAQKKNDELET 995
Cdd:COG4717 237 EAAALEERLKEARLLlliaaallalLGLGGSLLSLILTIAGVLFLVLGllallfllLAREKASLGKEAEELQALPALEEL 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 996 QAEELKKQAEQ--AKADKRAEEVLQTMEKVTKekdaiHQEKIETLASLENSRQTNEKLQNELDMLKQNNLKNEEELTKSK 1073
Cdd:COG4717 317 EEEELEELLAAlgLPPDLSPEELLELLDRIEE-----LQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAAL 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1074 ELLNLENKKVEELKKEFEALKLAAAQKSQQLAALQEENVKlaEELgrsrdevtshQKLEEERSVLNNQLLEMKKRESTLK 1153
Cdd:COG4717 392 EQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELE--EEL----------EELEEELEELEEELEELREELAELE 459
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1154 KEIdeERASLQKSISDTSALITQKDEELEKLRNEITVLRgenASAKTLQSVVKTLESDKL 1213
Cdd:COG4717 460 AEL--EQLEEDGELAELLQELEELKAELRELAEEWAALK---LALELLEEAREEYREERL 514
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
553-1147 |
1.06e-09 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 62.84 E-value: 1.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 553 ISSLQEKMAAAGKEHQREMSSLKEKFESSEEALRKEIKTLSASNERMgkenESLKTKLDHANKENSDVIELWKSKLESAI 632
Cdd:pfam05557 11 LSQLQNEKKQMELEHKRARIELEKKASALKRQLDRESDRNQELQKRI----RLLEKREAEAEEALREQAELNRLKKKYLE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 633 ASHQQAMEElkvsfnkgvgaqtaefAELKTQMEKVKLDYENEMSNLKLKQENEKSQhlkeieaLKAKLLEVTEEKEQtLE 712
Cdd:pfam05557 87 ALNKKLNEK----------------ESQLADAREVISCLKNELSELRRQIQRAELE-------LQSTNSELEELQER-LD 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 713 NLKAKLESVEdQHLVEMEDTLNKLQEAEIKVSNLTKELQGKEQKLLDLEKNLSAVNQVKDsLEKELQLLKEKFTSAVDGA 792
Cdd:pfam05557 143 LLKAKASEAE-QLRQNLEKQQSSLAEAEQRIKELEFEIQSQEQDSEIVKNSKSELARIPE-LEKELERLREHNKHLNENI 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 793 ENAQrAMQETINKLNQKEEQFALMSSELEQLKSNLTVMETKLKEREEREQQLTEAKVK---LENDIAEIMKSSGDSSAQL 869
Cdd:pfam05557 221 ENKL-LLKEEVEDLKRKLEREEKYREEAATLELEKEKLEQELQSWVKLAQDTGLNLRSpedLSRRIEQLQQREIVLKEEN 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 870 MKMNDELRLKERQLEQIQLELTKANEKAVQLQKNVEQTAQKAEQSQQETLKTHQEE--LKKMQDQLTDmkkqmETSQNQY 947
Cdd:pfam05557 300 SSLTSSARQLEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERdgYRAILESYDK-----ELTMSNY 374
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 948 KDLQAKYEKETSEMITKHDADIKGFKQNLLDAEEALKAAQKKNDELETQAEELKKQAEQAKADKRAEEVlqtmekvtkek 1027
Cdd:pfam05557 375 SPQLLERIEEAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQESLADPSYSKEEV----------- 443
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1028 DAIHQeKIETLaSLENSRQTNEKLQNELDMLKQnNLKNEEELTKSKELLNLENKKVEelkkefealklAAAQKSQQLAAL 1107
Cdd:pfam05557 444 DSLRR-KLETL-ELERQRLREQKNELEMELERR-CLQGDYDPKKTKVLHLSMNPAAE-----------AYQQRKNQLEKL 509
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 2024359659 1108 QEENVKLAEELGRSRDEVTSHQKLEEERSVLNNQ-LLEMKK 1147
Cdd:pfam05557 510 QAEIERLKRLLKKLEDDLEQVLRLPETTSTMNFKeVLDLRK 550
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
686-1194 |
1.68e-09 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 62.50 E-value: 1.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 686 KSQHLKEIEALKAKLLEVTEEKEQTLENLKAKLEsvedQHLVEMEDtlnKLQEAEIKVSNLTKELQGKEQKLLDLEKNLS 765
Cdd:pfam01576 69 RKQELEEILHELESRLEEEEERSQQLQNEKKKMQ----QHIQDLEE---QLDEEEAARQKLQLEKVTTEAKIKKLEEDIL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 766 AVNQVKDSLEKELQLLKEKftsavdgaenaqraMQETINKLNQKEEQFALMSSELEQLKSNLTVMETKLKEREEREQQLT 845
Cdd:pfam01576 142 LLEDQNSKLSKERKLLEER--------------ISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELE 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 846 EAKVKLENDIAEIMKSSGDSSAQLMKMNDELRLKERQLEQIQLELTKANEKAVQLQKNV-EQTAQKAEqsQQETLKTHQE 924
Cdd:pfam01576 208 KAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIrELEAQISE--LQEDLESERA 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 925 ELKKMQDQLTDMKKQMET----------SQNQYKDLQAKYEKETS------------------EMITKHDADIKGFKQNL 976
Cdd:pfam01576 286 ARNKAEKQRRDLGEELEAlkteledtldTTAAQQELRSKREQEVTelkkaleeetrsheaqlqEMRQKHTQALEELTEQL 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 977 LDAEEALKAAQKKNDELETQAEELK---KQAEQAKAD-----KRAEEVLQTMEKVTKEKDAIHQEKIETLAslensrqtn 1048
Cdd:pfam01576 366 EQAKRNKANLEKAKQALESENAELQaelRTLQQAKQDsehkrKKLEGQLQELQARLSESERQRAELAEKLS--------- 436
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1049 eKLQNELDMLKQNNLKNEEELTK-SKELLNLENK--KVEELKKEFEALKLAAaqkSQQLAALQEENVKLAEELgrsRDEV 1125
Cdd:pfam01576 437 -KLQSELESVSSLLNEAEGKNIKlSKDVSSLESQlqDTQELLQEETRQKLNL---STRLRQLEDERNSLQEQL---EEEE 509
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024359659 1126 TSHQKLEEERSVLNNQLLEMKKR---ESTLKKEIDEERASLQKSISDTSALITQKDEELEKLRNEITVLRGE 1194
Cdd:pfam01576 510 EAKRNVERQLSTLQAQLSDMKKKleeDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQE 581
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
336-964 |
1.86e-09 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 62.43 E-value: 1.86e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 336 LLTETSSRYARKISGTTALQEALKEKQQHIEQLLaERDLERAEVAKATSHVGEIEQELALVRDGHDRHVLEMEAKMDqlr 415
Cdd:pfam05483 159 LLKETCARSAEKTKKYEYEREETRQVYMDLNNNI-EKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKE--- 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 416 amVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLERKrqisedpentqTKLEHARIKELEQsllfektKADKL 495
Cdd:pfam05483 235 --INDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEK-----------TKLQDENLKELIE-------KKDHL 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 496 QRELEDTRVATVSEKSRIMELERDLALRVKEVAEL------------RGRLESSKHIDDVDTSLSLLQE--------ISS 555
Cdd:pfam05483 295 TKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLteekeaqmeelnKAKAAHSFVVTEFEATTCSLEEllrteqqrLEK 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 556 LQEKMAAAGKEHQREMSSLKE--KFESSEEALRKEIKTLSASNERMGKENESLK-------------TKLDHANKENSDV 620
Cdd:pfam05483 375 NEDQLKIITMELQKKSSELEEmtKFKNNKEVELEELKKILAEDEKLLDEKKQFEkiaeelkgkeqelIFLLQAREKEIHD 454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 621 IELWKSKLESAIASHQQAMEELKVSFNKGVGAQTAEFAEL-KTQMEKVKLDYENEMSNLKLKQENEKSQHLKEIEALKAK 699
Cdd:pfam05483 455 LEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCdKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLK 534
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 700 LLEVTEEKEQtleNLKAKLESVEDQHLVEMEDTLNKLQEAEIKVSNLTKELQGKEQKLL-------DLEKNLSAVNQVKD 772
Cdd:pfam05483 535 QIENLEEKEM---NLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKilenkcnNLKKQIENKNKNIE 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 773 SLEKELQLLKEKFTsavdgAENAQRAMQETinKLNQKEEQFALMSSELEQLKSNLtvmetklkEREEREQQLTEAKVKLE 852
Cdd:pfam05483 612 ELHQENKALKKKGS-----AENKQLNAYEI--KVNKLELELASAKQKFEEIIDNY--------QKEIEDKKISEEKLLEE 676
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 853 ndiAEIMKSSGDSSAQLMKMNDeLRLKERQLEQIQL-ELTKANEKAVQLQKNVEQTAQKAEQSQQETLKTHQE-ELKKMQ 930
Cdd:pfam05483 677 ---VEKAKAIADEAVKLQKEID-KRCQHKIAEMVALmEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEiELSNIK 752
|
650 660 670
....*....|....*....|....*....|....
gi 2024359659 931 DQLTDMKKQMETSQNQYKDLQAKYEKETSEMITK 964
Cdd:pfam05483 753 AELLSLKKQLEIEKEEKEKLKMEAKENTAILKDK 786
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
427-1297 |
1.96e-09 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 62.76 E-value: 1.96e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 427 ELLNQLEEEKRKVEDLQFRVEEESITKGDLERKRQIsedpENTQTKLE---HARIKELEQSLLFEKTKADKLQRELEDtr 503
Cdd:TIGR01612 901 EINKSIEEEYQNINTLKKVDEYIKICENTKESIEKF----HNKQNILKeilNKNIDTIKESNLIEKSYKDKFDNTLID-- 974
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 504 vatvseksRIMELER---DLALRVKEVAELrgrlESSKHIDDVDTSLSLLQE---ISSLQEKMAAAGKEHQReMSSLKEK 577
Cdd:TIGR01612 975 --------KINELDKafkDASLNDYEAKNN----ELIKYFNDLKANLGKNKEnmlYHQFDEKEKATNDIEQK-IEDANKN 1041
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 578 FESSEEALRKEIKTLSASNER-MGKENESLktkldhankeNSDVIElwksKLESAIASHQQAMEELKV-SFNKGVGAQTA 655
Cdd:TIGR01612 1042 IPNIEIAIHTSIYNIIDEIEKeIGKNIELL----------NKEILE----EAEINITNFNEIKEKLKHyNFDDFGKEENI 1107
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 656 EFAElktQMEKVKLDYENemsnlkLKQENEKsqHLKEIEALKAKllevteeKEQTLENLKAKLESVEDqhLVEMEDTLNK 735
Cdd:TIGR01612 1108 KYAD---EINKIKDDIKN------LDQKIDH--HIKALEEIKKK-------SENYIDEIKAQINDLED--VADKAISNDD 1167
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 736 LQEAEIKVSNLTKELQGKEQKLLDLEKNLSAVNQVkdslEKELQLLKEKFTSAVDGAENAQRAMQETINKLNQKEEQfal 815
Cdd:TIGR01612 1168 PEEIEKKIENIVTKIDKKKNIYDEIKKLLNEIAEI----EKDKTSLEEVKGINLSYGKNLGKLFLEKIDEEKKKSEH--- 1240
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 816 MSSELEQLKSNLTvmETKLKEREEREQQLTEAKVKLENDIAEIMKSSGDSSAQLMKMNDE----LRLKERQLEQIQLELT 891
Cdd:TIGR01612 1241 MIKAMEAYIEDLD--EIKEKSPEIENEMGIEMDIKAEMETFNISHDDDKDHHIISKKHDEnisdIREKSLKIIEDFSEES 1318
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 892 KANEKAVQLQKNVEQtAQKaeqsqqetlktHQEELKKMQDQLTDMKKQMETsqNQYKDLQAKYeKETSEMITKHDADIKg 971
Cdd:TIGR01612 1319 DINDIKKELQKNLLD-AQK-----------HNSDINLYLNEIANIYNILKL--NKIKKIIDEV-KEYTKEIEENNKNIK- 1382
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 972 fkqNLLDAEEALKAAQKKNDELEtqaeELKKQAEQAKADKRAEEVLQtmeKVTKEKDAIHQEKIETLASLENSRQTNEKL 1051
Cdd:TIGR01612 1383 ---DELDKSEKLIKKIKDDINLE----ECKSKIESTLDDKDIDECIK---KIKELKNHILSEESNIDTYFKNADENNENV 1452
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1052 Q---NELDM----------LKQNNLKNE-----EELTKSKELLNLENKKVEELKKEFEALKLAAAQKSQQLAALQEENVK 1113
Cdd:TIGR01612 1453 LllfKNIEMadnksqhilkIKKDNATNDhdfniNELKEHIDKSKGCKDEADKNAKAIEKNKELFEQYKKDVTELLNKYSA 1532
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1114 LAEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKRESTLKKEIDEeraslQKSISDTSALITQKDEELEKLRNEItvlrg 1193
Cdd:TIGR01612 1533 LAIKNKFAKTKKDSEIIIKEIKDAHKKFILEAEKSEQKIKEIKKE-----KFRIEDDAAKNDKSNKAAIDIQLSL----- 1602
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1194 ENASAKTLQ-SVVKTLESDKLKLEEKVKNLEQKLKAKSEQplTVTSPSGDIAANLL--------QDESAEDKQQEIDFLN 1264
Cdd:TIGR01612 1603 ENFENKFLKiSDIKKKINDCLKETESIEKKISSFSIDSQD--TELKENGDNLNSLQefleslkdQKKNIEDKKKELDELD 1680
|
890 900 910 920
....*....|....*....|....*....|....*....|
gi 2024359659 1265 SVI------VDLQRRNEELNLkIQRMCEAAL-NGNEEETI 1297
Cdd:TIGR01612 1681 SEIekieidVDQHKKNYEIGI-IEKIKEIAIaNKEEIESI 1719
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
411-961 |
2.86e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 61.59 E-value: 2.86e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 411 MDQLRAMVEA-ADREKVELLNQLEEEKRKVEDLQFRVEEESIT-KGDLERKRQISEDPENTQTKLEharikELEQSLlfe 488
Cdd:PRK02224 189 LDQLKAQIEEkEEKDLHERLNGLESELAELDEEIERYEEQREQaRETRDEADEVLEEHEERREELE-----TLEAEI--- 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 489 ktkadklqRELEDTRVATVSEKSRIMELERDLALRVKEVAELRGRLESSKHIDDVDTSlSLLQEISSLQEKMAAAGKEHQ 568
Cdd:PRK02224 261 --------EDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAE-AVEARREELEDRDEELRDRLE 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 569 REMSSLKEkFESSEEALRKEIKTLSASNERMGKENESLKTKLDHANKENSDVIELwKSKLESAIASHQQAMEELKVSFNK 648
Cdd:PRK02224 332 ECRVAAQA-HNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREE-IEELEEEIEELRERFGDAPVDLGN 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 649 GVG---AQTAEFAELKTQMEKVKLDYENEMSNLK-------------LKQENEKSQHLKEIEALKAKLLEVTEEKEQ--- 709
Cdd:PRK02224 410 AEDfleELREERDELREREAELEATLRTARERVEeaealleagkcpeCGQPVEGSPHVETIEEDRERVEELEAELEDlee 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 710 TLENLKAKLESVEDqhLVEMEDTLNKLQEaeiKVSNLTKELQGKEQKLLDLEKNLSAVNQVKDSLEKELQllkEKFTSAV 789
Cdd:PRK02224 490 EVEEVEERLERAED--LVEAEDRIERLEE---RREDLEELIAERRETIEEKRERAEELRERAAELEAEAE---EKREAAA 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 790 DGAENAQRAmQETINKLNQKEEQFAlmsSELEQLKSnltvMETKLKEREEREQQLTEAKVKLEnDIAEIMKSSGDSSAQL 869
Cdd:PRK02224 562 EAEEEAEEA-REEVAELNSKLAELK---ERIESLER----IRTLLAAIADAEDEIERLREKRE-ALAELNDERRERLAEK 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 870 MKMNDELR--LKERQLEQIQLELTKANEKAVQLQKNVEQTAQKAEQSQQ-----ETLKTHQEELKKMQDQLTDMKKQMET 942
Cdd:PRK02224 633 RERKRELEaeFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAeigavENELEELEELRERREALENRVEALEA 712
|
570
....*....|....*....
gi 2024359659 943 SQNQYKDLQAKYEKETSEM 961
Cdd:PRK02224 713 LYDEAEELESMYGDLRAEL 731
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
764-1013 |
3.16e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 60.55 E-value: 3.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 764 LSAVNQVKDSLEKELQLLKEKFTSAVDGAENAQRAMQETINKLNQKEEQFALMSSELEQLKSNLTVMETKLKEREEREQQ 843
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 844 LTEAKVKLENDIAEImkssgdssaqlmkmndeLRLKERQLEQIQLELTKANEKAVQLQKNVE--QTAQKAEQSQQETLKT 921
Cdd:COG4942 95 LRAELEAQKEELAEL-----------------LRALYRLGRQPPLALLLSPEDFLDAVRRLQylKYLAPARREQAEELRA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 922 HQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEKETSEmitkHDADIKGFKQNLLDAEEALKAAQKKNDELETQAEELK 1001
Cdd:COG4942 158 DLAELAALRAELEAERAELEALLAELEEERAALEALKAE----RQKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
|
250
....*....|..
gi 2024359659 1002 KQAEQAKADKRA 1013
Cdd:COG4942 234 AEAAAAAERTPA 245
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
582-1309 |
5.53e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 61.14 E-value: 5.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 582 EEALRKEIKTLSASNERMGKENESLKTKLDHANKENSDVIELWKSKLESAIASHQQAMEELKVsfnkgvgaqTAEFAELK 661
Cdd:pfam02463 172 KEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKL---------NEERIDLL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 662 TQMEKVKLDyENEMSNLKLKQENEKSQHLKEIEALKAKLLEVTEEKEQTLENLKAKLESVEDQHLVEMEDTLNKLQEAEI 741
Cdd:pfam02463 243 QELLRDEQE-EIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEK 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 742 KVSNLtkelqgkeqklldlEKNLSAVNQVKDSLEKELQLLKEKFTSAVDGAENAQRAMQETINKLNQKEEQFALMSSELE 821
Cdd:pfam02463 322 EKKKA--------------EKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLS 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 822 QLKSNLTVMETKLKEREEREQQLTEAKVKLENDIAEIMKSSGDSSAQLMKMNDELRLKERQLEQIQLELTKANEKavqlq 901
Cdd:pfam02463 388 SAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLK----- 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 902 knveqTAQKAEQSQQETLKTHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEKETSEMITKHDADIKGFKQNLLDAEE 981
Cdd:pfam02463 463 -----DELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVA 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 982 ALKAAQKKNDELETQAEELKKQAEQAKADKRAEEVLQTMEKVTKEKDAIHQEKIETLASLENSRQTNEKLQNELDMLKQN 1061
Cdd:pfam02463 538 VENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADE 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1062 NLKNEEELTKSKELLNLEN-----KKVEELKKEFEALKLAAAQKSQQLAALQEENVKLAEELGRSRDEVTSHQKLEEERS 1136
Cdd:pfam02463 618 DDKRAKVVEGILKDTELTKlkesaKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRR 697
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1137 VLNNQLLEMKKRESTLKKEIDEE-------RASLQKSISDTSALITQKDEELEKLRNEITVLRGENASAKTLQSVVKTLE 1209
Cdd:pfam02463 698 QLEIKKKEQREKEELKKLKLEAEelladrvQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELA 777
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1210 SDKLKLEEKVKNLEQKLKAKSEQPLTVTSPSGDIAANLLQDESAEDKQQEIDFLNSVIVDLQRRNEELNLKIQRMCEAAL 1289
Cdd:pfam02463 778 EEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELE 857
|
730 740
....*....|....*....|
gi 2024359659 1290 NGNEEETINYDSEEEGLSKK 1309
Cdd:pfam02463 858 RLEEEITKEELLQELLLKEE 877
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
429-1090 |
1.19e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 59.65 E-value: 1.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 429 LNQLEEEKRKVEDLQFRVEEEsitkgdLERKRQISEDPENTQTKLEHaRIKELEQSLLFEKTKADKLQRELEDTRVATVS 508
Cdd:TIGR04523 126 LNKLEKQKKENKKNIDKFLTE------IKKKEKELEKLNNKYNDLKK-QKEELENELNLLEKEKLNIQKNIDKIKNKLLK 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 509 EKSRIMELE------RDLALRVKEVAELRGRLESSKHIDDVDTSlSLLQEISSLQEKMAAAGKEHQREMSSLKEKfesse 582
Cdd:TIGR04523 199 LELLLSNLKkkiqknKSLESQISELKKQNNQLKDNIEKKQQEIN-EKTTEISNTQTQLNQLKDEQNKIKKQLSEK----- 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 583 ealRKEIKTLSASNERMGKENESLKTKLDHANKENSdviELWKSKLESAIASHQQAMEELKVSFNKgvgaQTAEFAELKT 662
Cdd:TIGR04523 273 ---QKELEQNNKKIKELEKQLNQLKSEISDLNNQKE---QDWNKELKSELKNQEKKLEEIQNQISQ----NNKIISQLNE 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 663 QMEKVKLDYENEMSNlklkqENEKSQHLKEIEALKAKLLEVTEEKEQTLENLKAKLESVEDQhlVEMEDTLNKLQEAEIK 742
Cdd:TIGR04523 343 QISQLKKELTNSESE-----NSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESK--IQNQEKLNQQKDEQIK 415
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 743 VSNLTKELQGKEQKLLdLEKNLSAVNQVKD------SLEKELQLLKEKFTSAVDGAENAQRAMQETINKLNQKEEQFALM 816
Cdd:TIGR04523 416 KLQQEKELLEKEIERL-KETIIKNNSEIKDltnqdsVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSK 494
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 817 SSELEQLKSNLTVMETKLKEREEREQQLTEAKVKLENDIAEIMKSSGDSSAQLMKMNDELRlkerqLEQIQLELTKANEK 896
Cdd:TIGR04523 495 EKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELK-----KENLEKEIDEKNKE 569
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 897 AVQLQKNveQTAQKAEQSQ-QETLKTHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEKeTSEMITKHDADIKGFKQN 975
Cdd:TIGR04523 570 IEELKQT--QKSLKKKQEEkQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEK-LSSIIKNIKSKKNKLKQE 646
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 976 LLDAEEALKAAQKKNDELETQAEELKkqaeqakadKRAEEVLQTMEKVTKEKDAIHQEKIetlaslensrqTNEKLQNEL 1055
Cdd:TIGR04523 647 VKQIKETIKEIRNKWPEIIKKIKESK---------TKIDDIIELMKDWLKELSLHYKKYI-----------TRMIRIKDL 706
|
650 660 670
....*....|....*....|....*....|....*
gi 2024359659 1056 DMLKQNNLKNEEELTKSKELLNLENKKVEELKKEF 1090
Cdd:TIGR04523 707 PKLEEKYKEIEKELKKLDEFSKELENIIKNFNKKF 741
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
795-1222 |
1.37e-08 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 59.10 E-value: 1.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 795 AQRAMQETINKLNQKEEQFALMSSELEQLKsnltvmetklkereEREQQLTEAKVKLENDIAEIMKSSGDSSAQLMKMND 874
Cdd:pfam06160 84 AKKALDEIEELLDDIEEDIKQILEELDELL--------------ESEEKNREEVEELKDKYRELRKTLLANRFSYGPAID 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 875 ELrlkERQLEQIQLELTKANEkavqlqknveqtaqkaEQSQQETLKTHqEELKKMQDQLTDMKKQMETSQNQYKDLQAKY 954
Cdd:pfam06160 150 EL---EKQLAEIEEEFSQFEE----------------LTESGDYLEAR-EVLEKLEEETDALEELMEDIPPLYEELKTEL 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 955 EKETSEMITKHDADI-KGFKQNLLDAEEALKAAQKKNDELETQAEELK-KQAEQA--KADKRAEEVLQTMEKVTKEKDAI 1030
Cdd:pfam06160 210 PDQLEELKEGYREMEeEGYALEHLNVDKEIQQLEEQLEENLALLENLElDEAEEAleEIEERIDQLYDLLEKEVDAKKYV 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1031 HQEKIETLASLENSRQTNEKLQNELDMLKQNNLKNEEELTKSKELlnleNKKVEELKKEFEALKLAAAQKSQ---QLAAL 1107
Cdd:pfam06160 290 EKNLPEIEDYLEHAEEQNKELKEELERVQQSYTLNENELERVRGL----EKQLEELEKRYDEIVERLEEKEVaysELQEE 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1108 QEENVKLAEELGRSRDEVTSH-QKLEEERSVLNNQLLEMKKRESTLKKEIDEER-----ASLQKSISDTSALITQKDEEL 1181
Cdd:pfam06160 366 LEEILEQLEEIEEEQEEFKESlQSLRKDELEAREKLDEFKLELREIKRLVEKSNlpglpESYLDYFFDVSDEIEDLADEL 445
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 2024359659 1182 EKLRNEItvlrgenasaKTLQSVVKTLESDKLKLEEKVKNL 1222
Cdd:pfam06160 446 NEVPLNM----------DEVNRLLDEAQDDVDTLYEKTEEL 476
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
336-1064 |
1.71e-08 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 59.29 E-value: 1.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 336 LLTETSSRYARKISGTTA-LQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALVRdghdRHVLEMEAKMDQL 414
Cdd:TIGR00606 398 LVIERQEDEAKTAAQLCAdLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVI----KELQQLEGSSDRI 473
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 415 RAMVEAADREKVELlnQLEEEKRKVEDLQFRVEEESITKGDLERKRQiSEDPENTQTKLEHariKELEQSLLFEKTKADK 494
Cdd:TIGR00606 474 LELDQELRKAEREL--SKAEKNSLTETLKKEVKSLQNEKADLDRKLR-KLDQEMEQLNHHT---TTRTQMEMLTKDKMDK 547
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 495 LQReledtrvatvseksrimeLERDLALRVKEVAELRGRLESSKHIDDVDTSLSllQEISSLQEKMAAAGKEHQReMSSL 574
Cdd:TIGR00606 548 DEQ------------------IRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKS--KEINQTRDRLAKLNKELAS-LEQN 606
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 575 KEKFESSEEALRKEIKTLS------ASNERMGKENESLKTKLDHANKEnsdvielwKSKLESAIASHQQAMEELKVSfNK 648
Cdd:TIGR00606 607 KNHINNELESKEEQLSSYEdklfdvCGSQDEESDLERLKEEIEKSSKQ--------RAMLAGATAVYSQFITQLTDE-NQ 677
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 649 GVGAQTAEFAELKTQMEKVKLDYENEMSNLKLKQEN------EKSQHLKEIEALKAKLLEVTEEKEQTLENLKAKLESVE 722
Cdd:TIGR00606 678 SCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSteselkKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVN 757
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 723 dqhlVEMEDTLNKLQEAEIKVSNLTKELQGKEQKLLDLEKNLSAVNQVKDSLEKELQLLKEKFTSAVDgaenaqRAMQET 802
Cdd:TIGR00606 758 ----RDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLD------RTVQQV 827
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 803 INKLNQKEEQFALMSSELEQLKsnltvmetklKEREEREQQLTEAKVKLeNDIAEIMKSSGDSSAQLMKMNDELRLKERQ 882
Cdd:TIGR00606 828 NQEKQEKQHELDTVVSKIELNR----------KLIQDQQEQIQHLKSKT-NELKSEKLQIGTNLQRRQQFEEQLVELSTE 896
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 883 LEQIQLELTKANEKAVQLqknvEQTAQKAEQSQQETLKTHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEKETSEMI 962
Cdd:TIGR00606 897 VQSLIREIKDAKEQDSPL----ETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYL 972
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 963 TKHDADIKGFKQNLldaEEALKAAQKKNDELETQAEEL--KKQAEQAKADKRAEEVLQTMEKVTKEKDAIHQEKIETLAS 1040
Cdd:TIGR00606 973 KQKETELNTVNAQL---EECEKHQEKINEDMRLMRQDIdtQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQV 1049
|
730 740
....*....|....*....|....
gi 2024359659 1041 LEnSRQTNEKLQNELDMLKQNNLK 1064
Cdd:TIGR00606 1050 LQ-MKQEHQKLEENIDLIKRNHVL 1072
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
479-812 |
1.82e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.31 E-value: 1.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 479 KELEQSLLFEKTKADKLQRELEDTRVATVSEKSRIMELERDLALRVKEVAELRGRLE--------SSKHIDDVDTSLSLL 550
Cdd:TIGR02169 670 RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEqleqeeekLKERLEELEEDLSSL 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 551 -QEISSLQEKMAAAGK---EHQREMSSLKEKFESSEEALRKE-IKTLSASNERMGKENESLKTKLDHANKENSDViELWK 625
Cdd:TIGR02169 750 eQEIENVKSELKELEArieELEEDLHKLEEALNDLEARLSHSrIPEIQAELSKLEEEVSRIEARLREIEQKLNRL-TLEK 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 626 SKLESAIASHQQAMEELK---VSFNKGVGAQTAEFAELKTQMEKVKL---DYENEMSNLKLKQENEKSQhLKEIEALKAK 699
Cdd:TIGR02169 829 EYLEKEIQELQEQRIDLKeqiKSIEKEIENLNGKKEELEEELEELEAalrDLESRLGDLKKERDELEAQ-LRELERKIEE 907
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 700 LLEVTEEKEQTLENLKAKLESVEDQhLVEMEDTLNKLQE---AEIKVSNLTKELQGKEQKLLDLEK-NLSAVNQVKDSLE 775
Cdd:TIGR02169 908 LEAQIEKKRKRLSELKAKLEALEEE-LSEIEDPKGEDEEipeEELSLEDVQAELQRVEEEIRALEPvNMLAIQEYEEVLK 986
|
330 340 350
....*....|....*....|....*....|....*..
gi 2024359659 776 KELQLLKEKFTsavdgAENAQRAMQETINKLNQKEEQ 812
Cdd:TIGR02169 987 RLDELKEKRAK-----LEEERKAILERIEEYEKKKRE 1018
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
450-1052 |
2.30e-08 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 58.76 E-value: 2.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 450 SITKGDLERKRQISEDPENTQTKL-EHARIKELEQSLLFEKTKADKLQRELedtrvatvsekSRIMELERDLALRVKEVA 528
Cdd:PRK01156 132 SIFVGQGEMDSLISGDPAQRKKILdEILEINSLERNYDKLKDVIDMLRAEI-----------SNIDYLEEKLKSSNLELE 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 529 ELrgrlesSKHIDDVDTSLS-LLQEISSLQEKMAAAGKEHQ------REMSSLKEKFESSEEALRKEIKTLSASNERMGK 601
Cdd:PRK01156 201 NI------KKQIADDEKSHSiTLKEIERLSIEYNNAMDDYNnlksalNELSSLEDMKNRYESEIKTAESDLSMELEKNNY 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 602 ----ENESLKTKLDHANKENSDVIELWKSKleSAIASHQQAMEELKVSFNK--GVGAQTAEFAELKTQMEKVKLDYE--- 672
Cdd:PRK01156 275 ykelEERHMKIINDPVYKNRNYINDYFKYK--NDIENKKQILSNIDAEINKyhAIIKKLSVLQKDYNDYIKKKSRYDdln 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 673 NEMSNLKLKQENEKSqHLKEIEALKAKLlevtEEKEQTLENLKAKLESVedqhlvemedtlnkLQEAEIKVSNLTKELQG 752
Cdd:PRK01156 353 NQILELEGYEMDYNS-YLKSIESLKKKI----EEYSKNIERMSAFISEI--------------LKIQEIDPDAIKKELNE 413
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 753 KEQKLLDLEKNLSAVNQVKDSL-------EKELQLLKEKFTSAVDGAENAQRAMQETINKLNQKEEQfalMSSELEQLKS 825
Cdd:PRK01156 414 INVKLQDISSKVSSLNQRIRALrenldelSRNMEMLNGQSVCPVCGTTLGEEKSNHIINHYNEKKSR---LEEKIREIEI 490
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 826 NLTVMETKLKEREEREQQLteAKVKLENDIAEIMKSSgDSSAQLMK-MNDELRLKERQLEQIQL-ELTKANEKAVQLQKN 903
Cdd:PRK01156 491 EVKDIDEKIVDLKKRKEYL--ESEEINKSINEYNKIE-SARADLEDiKIKINELKDKHDKYEEIkNRYKSLKLEDLDSKR 567
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 904 VEQTAQKAEQS--QQETLKTHQEELKKmqdQLTDMKKQMETSQNQYKDLQAKYEKETSEMitKHDADIKGFKQNLLDAEE 981
Cdd:PRK01156 568 TSWLNALAVISliDIETNRSRSNEIKK---QLNDLESRLQEIEIGFPDDKSYIDKSIREI--ENEANNLNNKYNEIQENK 642
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024359659 982 AL-KAAQKKNDELETQAEELK-KQAEQAKADKRAEEVLQTMEKVTKEKDAIHQEKIETLASLENSRQTNEKLQ 1052
Cdd:PRK01156 643 ILiEKLRGKIDNYKKQIAEIDsIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELS 715
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
873-1098 |
2.68e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.85 E-value: 2.68e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 873 NDELRLKERQLEQIQLELTKANEKAVQLQKNVEQTAQKAEQSQQE------TLKTHQEELKKMQDQLTDMKKQMETSQNQ 946
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRiaalarRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 947 YKDLQAKYEKETSEMITKHDADIKGF---KQNLLDAEEALKAAQKKNDELETQAEELKKQAEQAkadkraEEVLQTMEKV 1023
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAEL------AALRAELEAE 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024359659 1024 TKEKDAIHQEKIETLASLENSRQTNEKLQNELDMLKQNNLKNEEELTKSKELLNLENKKVEELKKEFEALKLAAA 1098
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
404-1100 |
2.92e-08 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 58.70 E-value: 2.92e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 404 VLEMEAKMDQLRAMVEA--ADREKVELLNQLEEEK--RKVEDLQFRVeeesitkgDLERKRQISEDPENTQTKLEHArik 479
Cdd:pfam12128 188 MHSKEGKFRDVKSMIVAilEDDGVVPPKSRLNRQQveHWIRDIQAIA--------GIMKIRPEFTKLQQEFNTLESA--- 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 480 ELEQSLLFEKTKADKLQRELEDTRVATVSE--KSRIMELERDLAlrvKEVAELRGRLESSKhiDDVDTSLSLLQEISSLQ 557
Cdd:pfam12128 257 ELRLSHLHFGYKSDETLIASRQEERQETSAelNQLLRTLDDQWK---EKRDELNGELSAAD--AAVAKDRSELEALEDQH 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 558 EKMAAAGKEHQREMSSLKEKFESSEEALRKEIKTLSASNERMGKENESLKTKLDhanKENSDVIELWKSKLE-------- 629
Cdd:pfam12128 332 GAFLDADIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIK---EQNNRDIAGIKDKLAkireardr 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 630 --SAIASHQQAMEElkvSFNKGVGAQTAEFAELKTQME------KVKLDYENEMSNLKLKQEN----------EKSQHLK 691
Cdd:pfam12128 409 qlAVAEDDLQALES---ELREQLEAGKLEFNEEEYRLKsrlgelKLRLNQATATPELLLQLENfderierareEQEAANA 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 692 EIEALKAKLLEVTEEKEQTLENLKaklesVEDQHLVEMEDTLNKLQEAEIKVSN-----LTKELQGKEQKL--------- 757
Cdd:pfam12128 486 EVERLQSELRQARKRRDQASEALR-----QASRRLEERQSALDELELQLFPQAGtllhfLRKEAPDWEQSIgkvispell 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 758 --LDL-----------EKNLSAVN------QVKDSLEKELQLLKEKftSAVDGAENAQRAMQEtinklnQKEEQFALMSS 818
Cdd:pfam12128 561 hrTDLdpevwdgsvggELNLYGVKldlkriDVPEWAASEEELRERL--DKAEEALQSAREKQA------AAEEQLVQANG 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 819 ELEQLKSNLTVMETKLKEREEREQQLT----EAKVKLENDIAEIMKSSGDSSAQLMKMNDELRLKERQ-LEQIQLELTKA 893
Cdd:pfam12128 633 ELEKASREETFARTALKNARLDLRRLFdekqSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAwLEEQKEQKREA 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 894 NEKAVQLQKNVEQTAQKAEQSQQETLKTHQEELKKMQDQLtdmKKQMETsqnqykDLQAKYEKEtsEMITKHDADIKGFK 973
Cdd:pfam12128 713 RTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKAL---ETWYKR------DLASLGVDP--DVIAKLKREIRTLE 781
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 974 QNLLDAEEALKAAQKKNDELETQAeELKKQAEQAkadkRAEEVLQTMEKVTKEKDAIHQEKIETLASLENSRQTNEKLQN 1053
Cdd:pfam12128 782 RKIERIAVRRQEVLRYFDWYQETW-LQRRPRLAT----QLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQV 856
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*.
gi 2024359659 1054 ELD---------MLKQNNLKNEEELTKSKELLNLENKKVEELKKEFEALKLAAAQK 1100
Cdd:pfam12128 857 RLSenlrglrceMSKLATLKEDANSEQAQGSIGERLAQLEDLKLKRDYLSESVKKY 912
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
427-1149 |
3.85e-08 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 58.13 E-value: 3.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 427 ELLNQLEEEKRKVED-LQFRVEEESITKGDLERKRQISEDPENTQTKLEHARIKELEQSLLFEKTKADKLQRELEDTRVA 505
Cdd:TIGR00606 210 KYLKQYKEKACEIRDqITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 506 TVSEKSRIMELERdlalrVKEVAELRGRLESSKHiddvdtslsllQEISSLQEKMAAAGKEhQREMSSLKEKFESSEEAL 585
Cdd:TIGR00606 290 LKMEKVFQGTDEQ-----LNDLYHNHQRTVREKE-----------RELVDCQRELEKLNKE-RRLLNQEKTELLVEQGRL 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 586 RKEIKTLSASNERMGKENESLKTKLDHANKENSDVIELwksKLESAIASHQQAMEELKVSFNKGVgaqtAEFAELKTQME 665
Cdd:TIGR00606 353 QLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSER---QIKNFHTLVIERQEDEAKTAAQLC----ADLQSKERLKQ 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 666 KVKLDYENEMSNLKLKQENEKSQHLKEIEALKAKLLEvteekeqtLENLKAKLESV--EDQHLVEMEDTLNKLQEAEIKV 743
Cdd:TIGR00606 426 EQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKE--------LQQLEGSSDRIleLDQELRKAERELSKAEKNSLTE 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 744 SNLTKELQGKEQKLlDLEKNLSAVNQVKDSLEKELQLLKEKFTSAVDGAENAQRAMQetiNKLNQKEEQFALMS--SELE 821
Cdd:TIGR00606 498 TLKKEVKSLQNEKA-DLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRK---IKSRHSDELTSLLGyfPNKK 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 822 QLKSNLTVMETKLKEREEREQQLTEAKVKLENDIAEIMKSSGDSSAQLMKMNDEL------RLKERQLEQIQLELTKANE 895
Cdd:TIGR00606 574 QLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLfdvcgsQDEESDLERLKEEIEKSSK 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 896 KAVQLQKNVEQTAQKAEQSQQETLK---------THQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEKETSEMITK-- 964
Cdd:TIGR00606 654 QRAMLAGATAVYSQFITQLTDENQSccpvcqrvfQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLap 733
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 965 -HDADIKGFKQNLLDAEEALKAAQKKNDELETQAEELKKQAEQAKADKRAEEVLQT----MEKVTKEKDAIHQEKIETLA 1039
Cdd:TIGR00606 734 gRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTdvtiMERFQMELKDVERKIAQQAA 813
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1040 SLENS---------RQTNEKLQNELDMLKQNNLKNEEELTKSKELLNLENKKVEELKKEFEALKLAAAQKSQ---QLAAL 1107
Cdd:TIGR00606 814 KLQGSdldrtvqqvNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQfeeQLVEL 893
|
730 740 750 760
....*....|....*....|....*....|....*....|..
gi 2024359659 1108 QEENVKLAEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKRE 1149
Cdd:TIGR00606 894 STEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETS 935
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
917-1163 |
4.29e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.00 E-value: 4.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 917 ETLKTHQEELKKMQDQLTDMKKQMETSQnQYKDLQAKYEKETSEmITKHDADIKGFkqNLLDAEEALKAAQKKNDELETQ 996
Cdd:COG4913 228 DALVEHFDDLERAHEALEDAREQIELLE-PIRELAERYAAARER-LAELEYLRAAL--RLWFAQRRLELLEAELEELRAE 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 997 AEELKKQAEQAKADKRAEEvlqtmEKVTKEKDAIHQEKIETLASLENSRQTNEKLQNEldmlKQNNLKNEEELTKSKELl 1076
Cdd:COG4913 304 LARLEAELERLEARLDALR-----EELDELEAQIRGNGGDRLEQLEREIERLERELEE----RERRRARLEALLAALGL- 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1077 nlenkKVEELKKEFEALKLAAAQKSQQLAALQEEnvkLAEELGRSRDEvtsHQKLEEERSVLNNQLLEMKKRESTLKKEI 1156
Cdd:COG4913 374 -----PLPASAEEFAALRAEAAALLEALEEELEA---LEEALAEAEAA---LRDLRRELRELEAEIASLERRKSNIPARL 442
|
....*..
gi 2024359659 1157 DEERASL 1163
Cdd:COG4913 443 LALRDAL 449
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1003-1220 |
4.50e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.08 E-value: 4.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1003 QAEQAKADKRAEEVLQTMEKVTKEKDAIHQEKIETLASLENSRQTNEKLQNELDMLKQNNLKNEEELTKSKELLNLENKK 1082
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1083 VEELKKEFEALkLAAAQKSQQLAALQ-----------EENVKLAEELGRSR-DEVTSHQKLEEERSVLNNQLLEMKKRES 1150
Cdd:COG4942 99 LEAQKEELAEL-LRALYRLGRQPPLAlllspedfldaVRRLQYLKYLAPARrEQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1151 TLKKEIDEERASLQKSISDTSALITQKDEELEKLRNEITVLRgenASAKTLQSVVKTLESDKLKLEEKVK 1220
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQ---QEAEELEALIARLEAEAAAAAERTP 244
|
|
| CLIP1_ZNF |
pfam16641 |
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of ... |
1352-1368 |
4.91e-08 |
|
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of the cytoplasmic linker protein CLIP1 (CLIP170). It forms a complex with the CAP-Gly domain of Dynactin.
Pssm-ID: 465212 Cd Length: 17 Bit Score: 49.77 E-value: 4.91e-08
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
353-1114 |
6.60e-08 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 57.14 E-value: 6.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 353 ALQEALKeKQQHIEQLL-AERDLERAEVAKATSHVGEIEQELALVRDGHDRHVLEMEAKMDQLRAMVEAADREKVELLNQ 431
Cdd:pfam10174 78 ALQDELR-AQRDLNQLLqQDFTTSPVDGEDKFSTPELTEENFRRLQSEHERQAKELFLLRKTLEEMELRIETQKQTLGAR 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 432 LEEEKRKVEDLQFRVEEESITKGDLERKRQISEdpentqtklEHARIKELEqSLLFEKTKADKLQRELEDTRVATVSEKS 511
Cdd:pfam10174 157 DESIKKLLEMLQSKGLPKKSGEEDWERTRRIAE---------AEMQLGHLE-VLLDQKEKENIHLREELHRRNQLQPDPA 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 512 RIMELERDLALRVKEVAELRgrlessKHIDDVDtslsllQEISSLQEKMAAAGKEHQREMSSLkEKFESSEEALRKEIKT 591
Cdd:pfam10174 227 KTKALQTVIEMKDTKISSLE------RNIRDLE------DEVQMLKTNGLLHTEDREEEIKQM-EVYKSHSKFMKNKIDQ 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 592 LSASNERMGKENESLKTKLDHANKENSDVielwksklesaiashQQAMEELKVSFNkgvgAQTAEFAELKTQMEKVKLDY 671
Cdd:pfam10174 294 LKQELSKKESELLALQTKLETLTNQNSDC---------------KQHIEVLKESLT----AKEQRAAILQTEVDALRLRL 354
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 672 ENEMSNLKLKQEneksqhlkeiealkaKLLEVTEEKEqtleNLKAKLESVEDQhLVEMEDTLNKLQEaeiKVSNLTKELQ 751
Cdd:pfam10174 355 EEKESFLNKKTK---------------QLQDLTEEKS----TLAGEIRDLKDM-LDVKERKINVLQK---KIENLQEQLR 411
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 752 GKEQKLLDLEKNLSAVNQVKDSLEKELQLLKEkftsAVDGAENAQRAMQETINKLNQ-KEEQFALMSSELEQLKSNLTVM 830
Cdd:pfam10174 412 DKDKQLAGLKERVKSLQTDSSNTDTALTTLEE----ALSEKERIIERLKEQREREDReRLEELESLKKENKDLKEKVSAL 487
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 831 ETKLKEREEREQQLTEAKVKLENDIAEImkssgdsSAQLMKMNDELRLKERQLEQIQLELTKANEKAVQLQKNVEqTAQK 910
Cdd:pfam10174 488 QPELTEKESSLIDLKEHASSLASSGLKK-------DSKLKSLEIAVEQKKEECSKLENQLKKAHNAEEAVRTNPE-INDR 559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 911 AEQSQQEtLKTHQEELKKMQ---DQLTDMKKQMETSQNQYKDLQAKYEKETSEMITkhDADIKGFKQNLLDAEEALKAAQ 987
Cdd:pfam10174 560 IRLLEQE-VARYKEESGKAQaevERLLGILREVENEKNDKDKKIAELESLTLRQMK--EQNKKVANIKHGQQEMKKKGAQ 636
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 988 KKNDELETQAEELKKQAEQakadkRAEEVLQTMEKVTKEKDAIHQEKIETLASLENSRQTNEKLQNE--------LDMLK 1059
Cdd:pfam10174 637 LLEEARRREDNLADNSQQL-----QLEELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLRAErrkqleeiLEMKQ 711
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*
gi 2024359659 1060 QNNLKNEEELTKSKELLNLENKKVEELKKEFEALKLAAAQKSQQLAALQEENVKL 1114
Cdd:pfam10174 712 EALLAAISEKDANIALLELSSSKKKKTQEEVMALKREKDRLVHQLKQQTQNRMKL 766
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
672-1281 |
7.86e-08 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 57.22 E-value: 7.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 672 ENEMSNLKLKQENEKSQHLKEIealkaklLEVtEEKEQTLENLKAKLESVEDQhLVEMEDTLNKLQEAEIKVSNLTKELQ 751
Cdd:PRK01156 137 QGEMDSLISGDPAQRKKILDEI-------LEI-NSLERNYDKLKDVIDMLRAE-ISNIDYLEEKLKSSNLELENIKKQIA 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 752 GKEQKLLDLEKNLSAVNQVKDSLEKELQLLKEkftsavdgAENAQRAMQETINKLNqkeeqfalmsSELEQLKSNLTVME 831
Cdd:PRK01156 208 DDEKSHSITLKEIERLSIEYNNAMDDYNNLKS--------ALNELSSLEDMKNRYE----------SEIKTAESDLSMEL 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 832 ---TKLKEREEREQQLTEAKV-KLENDIAEIMKSSGDssaqlmkmndeLRLKERQLEQIQLELTKANE---KAVQLQKnv 904
Cdd:PRK01156 270 eknNYYKELEERHMKIINDPVyKNRNYINDYFKYKND-----------IENKKQILSNIDAEINKYHAiikKLSVLQK-- 336
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 905 eqtaqkaEQSQQETLKTHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEKETSEMITKHDADIKGFKQNLLDAEEALK 984
Cdd:PRK01156 337 -------DYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKK 409
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 985 AAQKKN---DELETQAEEL--KKQAEQAKAD--KRAEEVLQTMEKVTKEKDAIHQEKIETLasLENSRQTNEKLQNELDM 1057
Cdd:PRK01156 410 ELNEINvklQDISSKVSSLnqRIRALRENLDelSRNMEMLNGQSVCPVCGTTLGEEKSNHI--INHYNEKKSRLEEKIRE 487
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1058 LKQNNLKNEEELTKSKELLN-LENKKVEELKKEFEALKLAAAQKSQ---QLAALQEENVKLAE--------ELGRSRDEV 1125
Cdd:PRK01156 488 IEIEVKDIDEKIVDLKKRKEyLESEEINKSINEYNKIESARADLEDikiKINELKDKHDKYEEiknrykslKLEDLDSKR 567
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1126 TSHQKLEEERSVLN-----NQLLEMKKRESTLKKEIDEERASLQKSISDTSALITQKDEELEKLRNEITVLRGENASAKT 1200
Cdd:PRK01156 568 TSWLNALAVISLIDietnrSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEK 647
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1201 LQSVVKTLESDKLKLEEKVKNLEqklkakseqplTVTSPSGDIAANLLQDESAEDK-QQEIDFLNSVIVDLQRRNEELNL 1279
Cdd:PRK01156 648 LRGKIDNYKKQIAEIDSIIPDLK-----------EITSRINDIEDNLKKSRKALDDaKANRARLESTIEILRTRINELSD 716
|
..
gi 2024359659 1280 KI 1281
Cdd:PRK01156 717 RI 718
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
972-1193 |
2.52e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.69 E-value: 2.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 972 FKQNLLD---AEEALKAAQKKNDELETQAEELKKQAEQAKADKRAEEVLQTMEKVTKEKDaiHQEKIETLASLENSRQTN 1048
Cdd:COG4913 213 VREYMLEepdTFEAADALVEHFDDLERAHEALEDAREQIELLEPIRELAERYAAARERLA--ELEYLRAALRLWFAQRRL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1049 EKLQNELDmlkqnnlKNEEELTKSKELLNLENKKVEELKKEFEALKLA-AAQKSQQLAALQEENVKLAEELGRSRDEVTS 1127
Cdd:COG4913 291 ELLEAELE-------ELRAELARLEAELERLEARLDALREELDELEAQiRGNGGDRLEQLEREIERLERELEERERRRAR 363
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1128 HQK----LEEERSVLNNQLLEMKKRESTLKKEIDEERASLQKSISDTSALITQKDEELEKLRNEITVLRG 1193
Cdd:COG4913 364 LEAllaaLGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
984-1214 |
3.35e-07 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 54.78 E-value: 3.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 984 KAAQKKNDELETQAEELKKQAE-QAKADKRaEEVLQTMEKVTKEKDAIHQE---KIETLASLENS-RQTNEKLQNELDML 1058
Cdd:PRK12704 27 KIAEAKIKEAEEEAKRILEEAKkEAEAIKK-EALLEAKEEIHKLRNEFEKElreRRNELQKLEKRlLQKEENLDRKLELL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1059 KqnnlKNEEELTKSKELLNLENKKVEELKKEFEALKLAAAQKSQQLAALQEENVKlaeelgrsrdevtshqkleeersvl 1138
Cdd:PRK12704 106 E----KREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAK------------------------- 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1139 nNQLLEMkkrestLKKEIDEERASLQKSIsdtsalITQKDEELEKLRNEITVL-----RGENASAKTLqSVVkTLESDKL 1213
Cdd:PRK12704 157 -EILLEK------VEEEARHEAAVLIKEI------EEEAKEEADKKAKEILAQaiqrcAADHVAETTV-SVV-NLPNDEM 221
|
.
gi 2024359659 1214 K 1214
Cdd:PRK12704 222 K 222
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
356-805 |
3.43e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.77 E-value: 3.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 356 EALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALVRDGHDRHvlEMEAKMDQLRAMVEAADREKVELLNQLEEE 435
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLL--PLYQELEALEAELAELPERLEELEERLEEL 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 436 KRKVEDLQFRVEEESITKGDLERKRQisEDPENTQTKLEHA--RIKELEQSLLFEKTKADKLQRELEDTRVAtvseksri 513
Cdd:COG4717 159 RELEEELEELEAELAELQEELEELLE--QLSLATEEELQDLaeELEELQQRLAELEEELEEAQEELEELEEE-------- 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 514 MELERDLALRVKEVAELRGRLESSKHIDDVDTSLSLLQEISSLQEKMAAAGKEHQREMSSLKEKFESSEEALRKEIKTLS 593
Cdd:COG4717 229 LEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQ 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 594 ASNERMGKENESLKTKLDHANKENSDVIELWKSKLESaIASHQQAMEELKVSFNKgvGAQTAEFAELKTQMEKVKLDYEN 673
Cdd:COG4717 309 ALPALEELEEEELEELLAALGLPPDLSPEELLELLDR-IEELQELLREAEELEEE--LQLEELEQEIAALLAEAGVEDEE 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 674 EMSNlKLKQENEKSQHLKEIEALKAKLLEVTEEKEQTLENLKaklesvEDQHLVEMEDTLNKLQEAEIKVSNLTKELQGK 753
Cdd:COG4717 386 ELRA-ALEQAEEYQELKEELEELEEQLEELLGELEELLEALD------EEELEEELEELEEELEELEEELEELREELAEL 458
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 2024359659 754 EQKLLDLEKN--LSAVNQVKDSLEKELQLLKEKFTSAVDGAENAQRAMQETINK 805
Cdd:COG4717 459 EAELEQLEEDgeLAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREE 512
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
552-1304 |
3.95e-07 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 55.06 E-value: 3.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 552 EISSLQEKMAAAGKEH-QREMSSLKEKFESSEEALRKEIKTLSASNERMGkENESLKTKLDHANKENSDVIELWKSKLES 630
Cdd:TIGR01612 285 DIDAAYKEHAAITHEHiDAELNDIKKHPMINDKELRPHGKRLIKILESEG-EQGHIINKLIFLEKEFEDTIHKSDIYKDE 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 631 AIASHQQAMEELKVSfnkgvgAQTAEFAELKTQMEKVKLDYENEMSNLKlkqeneksqHLKEIEALKAKLLEVTEEKEQT 710
Cdd:TIGR01612 364 CLSNHLFMEDYLKDD------KISPYYYEFLEEIKKIAKQRAIFFYNAK---------KLKHLEILYKHQEDILNNFHKT 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 711 LENLK-AKLESVEDQHLVEMEDTLN------KLQEAEIKVSNLTKELQGKEQKLLDLEKNLSAVNQVKdsleKELQLLKE 783
Cdd:TIGR01612 429 IERLIfEKPDPNNNNIFKDDFDEFNkpipksKLKALEKRFFEIFEEEWGSYDIKKDIDENSKQDNTVK----LILMRMKD 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 784 kFTSAVDGAENAQRAMQETINKLnqkeeqfalmSSELEQLKSNLTVMETKLKEREEREQQLTEAKVKLEndiaeimkssg 863
Cdd:TIGR01612 505 -FKDIIDFMELYKPDEVPSKNII----------GFDIDQNIKAKLYKEIEAGLKESYELAKNWKKLIHE----------- 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 864 dssaqlmkmndelrlkerqleqIQLELTKANEKAVQLQKNVEQTAQKAEQSQQE-----TLKTH-QEELKKMQD------ 931
Cdd:TIGR01612 563 ----------------------IKKELEEENEDSIHLEKEIKDLFDKYLEIDDEiiyinKLKLElKEKIKNISDkneyik 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 932 QLTDMKKQMEtSQNQYKDLQAK--------YEKETSEMITKHDADIKGFKQNLLDAEEALKAAQKKNDELETQAEELKKQ 1003
Cdd:TIGR01612 621 KAIDLKKIIE-NNNAYIDELAKispyqvpeHLKNKDKIYSTIKSELSKIYEDDIDALYNELSSIVKENAIDNTEDKAKLD 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1004 AEQAKADKRAEEVlQTMEKVTKEKD--AIHQEKIETLASL-ENSRQTNEKLQNELDMLKQNNLKNEEELT---------- 1070
Cdd:TIGR01612 700 DLKSKIDKEYDKI-QNMETATVELHlsNIENKKNELLDIIvEIKKHIHGEINKDLNKILEDFKNKEKELSnkindyakek 778
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1071 ------KSK---------ELLNLENKKVEELKKEFEALKlaaaQKSQQLAALQEENVKLAEELGRSRDEVTS----HQKL 1131
Cdd:TIGR01612 779 delnkyKSKiseiknhynDQINIDNIKDEDAKQNYDKSK----EYIKTISIKEDEIFKIINEMKFMKDDFLNkvdkFINF 854
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1132 EEE-RSVLNNQLLEMKKRESTLKKEIDEERASL-QKSISDTSALITQKDEELEKLRNEITVLRGENASAKTLQSVVKTLe 1209
Cdd:TIGR01612 855 ENNcKEKIDSEHEQFAELTNKIKAEISDDKLNDyEKKFNDSKSLINEINKSIEEEYQNINTLKKVDEYIKICENTKESI- 933
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1210 sdklkleEKVKNLEQKLKAKSEQPLTVTSPSGDIAANLLQ--DESAEDKQQEID--FLNSVIVDLQRRNEELnLKIQRMC 1285
Cdd:TIGR01612 934 -------EKFHNKQNILKEILNKNIDTIKESNLIEKSYKDkfDNTLIDKINELDkaFKDASLNDYEAKNNEL-IKYFNDL 1005
|
810
....*....|....*....
gi 2024359659 1286 EAALNGNEEETINYDSEEE 1304
Cdd:TIGR01612 1006 KANLGKNKENMLYHQFDEK 1024
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
640-1227 |
4.33e-07 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 54.70 E-value: 4.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 640 EELKVSFNKGVGAQTAEFAELK-TQMEKVKLDYENEMSNLK-LKQENEKSQHLKEI-EALKAKLLEVT-EEKEQTLENLK 715
Cdd:COG5022 845 EVLIQKFGRSLKAKKRFSLLKKeTIYLQSAQRVELAERQLQeLKIDVKSISSLKLVnLELESEIIELKkSLSSDLIENLE 924
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 716 AKLEsvedqHLVEMEDTLNKLQEAEIKVSNLTKelQGKEQKLLDLEKNLSAVNQVKDSLEKElqllkekftsavdgaena 795
Cdd:COG5022 925 FKTE-----LIARLKKLLNNIDLEEGPSIEYVK--LPELNKLHEVESKLKETSEEYEDLLKK------------------ 979
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 796 qraMQETINKLNQKEEQFALMSSELEQLKSNLTVMETKLKEREEREQQLTEakvkLENDIAeIMKSSGDSSAQLMKMNDE 875
Cdd:COG5022 980 ---STILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAE----LQSASK-IISSESTELSILKPLQKL 1051
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 876 LRLKERQLEQiqlelTKANEKAVQLQKNvEQTAQKAEQSQQETLKTHQEELKKMQDQLTD---MKKQMETSQNQYKDLQA 952
Cdd:COG5022 1052 KGLLLLENNQ-----LQARYKALKLRRE-NSLLDDKQLYQLESTENLLKTINVKDLEVTNrnlVKPANVLQFIVAQMIKL 1125
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 953 KYEKETSEMITKHDADIKGFKQNLLDAEEALKAaqkkNDELETQAEELKKQAEQAKADKRAeevlqTMEKVTKEKDAIHQ 1032
Cdd:COG5022 1126 NLLQEISKFLSQLVNTLEPVFQKLSVLQLELDG----LFWEANLEALPSPPPFAALSEKRL-----YQSALYDEKSKLSS 1196
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1033 EKIETlasLENSRQTNEKLQNELDMLKQNNLKN-------EEELTKSKELLNLENKKVEELKKEFEALKLAAAQKSQQLA 1105
Cdd:COG5022 1197 SEVND---LKNELIALFSKIFSGWPRGDKLKKLisegwvpTEYSTSLKGFNNLNKKFDTPASMSNEKLLSLLNSIDNLLS 1273
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1106 ALQEENVKLAEELgrsrdevtshQKLEEERSVLNNQLLEMKKRESTLKKEIDEERASLQKSISDTSALITQKDEELEKL- 1184
Cdd:COG5022 1274 SYKLEEEVLPATI----------NSLLQYINVGLFNALRTKASSLRWKSATEVNYNSEELDDWCREFEISDVDEELEELi 1343
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 2024359659 1185 -RNEITVLRGENASA-KTLQSV---VKTLESDKLKLEEKVKNLEQKLK 1227
Cdd:COG5022 1344 qAVKVLQLLKDDLNKlDELLDAcysLNPAEIQNLKSRYDPADKENNLP 1391
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
789-1172 |
5.06e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 54.57 E-value: 5.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 789 VDGAENAQRAMQETINKLNQKEEQFALMSSELEQLksnltvmetklkerEEREQQLTEakvklENDIAeimkssgdsSAQ 868
Cdd:COG3096 284 SERALELRRELFGARRQLAEEQYRLVEMARELEEL--------------SARESDLEQ-----DYQAA---------SDH 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 869 LMKMNDELRLKERqLEQIQLELTKANEKAVQLQKNVEQtAQKAEQSQQETLKTHQEELKKMQDQLTDMKKQMETSQN--- 945
Cdd:COG3096 336 LNLVQTALRQQEK-IERYQEDLEELTERLEEQEEVVEE-AAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTrai 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 946 QYKD-LQAKyeKETSEMITKHDADIKGFKQNLLDAEEALKAAQKKNDELETQ---AEELKKQAEQA-------------- 1007
Cdd:COG3096 414 QYQQaVQAL--EKARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKlsvADAARRQFEKAyelvckiagevers 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1008 KADKRAEEVLQT---MEKVTKEKDAIHQEKIEtLASLENSRQTNEKLQNELDMLKQNNLKNEEELTKSKELLNLENKKVE 1084
Cdd:COG3096 492 QAWQTARELLRRyrsQQALAQRLQQLRAQLAE-LEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELE 570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1085 ELKKEFEALKLAAAQKSQQLAALQEEN-------VKLAEELGRSRDEvtSHQKLEEERSVLN--NQLLEMKKRESTLKKE 1155
Cdd:COG3096 571 EQAAEAVEQRSELRQQLEQLRARIKELaarapawLAAQDALERLREQ--SGEALADSQEVTAamQQLLEREREATVERDE 648
|
410
....*....|....*..
gi 2024359659 1156 IDEERASLQKSISDTSA 1172
Cdd:COG3096 649 LAARKQALESQIERLSQ 665
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
729-1009 |
6.54e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 53.87 E-value: 6.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 729 MEDTLNKLQEAEIKVSNLTKElqgkEQKLLDLEKNLSaVNQVKDSlekelQLLKEKFTSavdgaENAQRAmQETINKL-- 806
Cdd:COG3206 96 LERVVDKLNLDEDPLGEEASR----EAAIERLRKNLT-VEPVKGS-----NVIEISYTS-----PDPELA-AAVANALae 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 807 ----NQKEEQFALMSSELEQLKSNLTVMETKLKEREEREQQLTEAK--VKLENDIAEIMKSSGDSSAQLMKMNDELRLKE 880
Cdd:COG3206 160 ayleQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNglVDLSEEAKLLLQQLSELESQLAEARAELAEAE 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 881 RQLEQIQLELTKANEKAVQLQKNVEQTAQKAEQSQQETlkthqeELKKMQDQLTDMKKQMETSQNQYKDLQAKYEKETSE 960
Cdd:COG3206 240 ARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEA------ELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQR 313
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 2024359659 961 MITKHDADIKGFKQN---LLDAEEALKAAQKKNDELETQAEELKKQAEQAKA 1009
Cdd:COG3206 314 ILASLEAELEALQAReasLQAQLAQLEARLAELPELEAELRRLEREVEVARE 365
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
830-1226 |
7.98e-07 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 53.69 E-value: 7.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 830 METKLKEREEREQQLTEAKVklENDIAEI--MKSSGDSSAQLMKMNDE-LRLKERQLEQIQLELTKANE--------KAV 898
Cdd:PRK04778 27 NYKRIDELEERKQELENLPV--NDELEKVkkLNLTGQSEEKFEEWRQKwDEIVTNSLPDIEEQLFEAEElndkfrfrKAK 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 899 QLQKNVEQTAQKAEQSQQETL----------KTHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEKETSEMitkhDAD 968
Cdd:PRK04778 105 HEINEIESLLDLIEEDIEQILeelqelleseEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENL----EEE 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 969 IKGFKQ-----NLLDAEEALKAAQKKNDELETQAEELKKQAEQAKADKRA--EEVLQTMEKVTKEKDAIHQEKIE-TLAS 1040
Cdd:PRK04778 181 FSQFVEltesgDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDqlQELKAGYRELVEEGYHLDHLDIEkEIQD 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1041 LENSRQTNEKLQNELDM--LKQNNLKNEEELTKSKELLNLE---NKKVEELKKEFealklaaaqkSQQLAALQEENVKLA 1115
Cdd:PRK04778 261 LKEQIDENLALLEELDLdeAEEKNEEIQERIDQLYDILEREvkaRKYVEKNSDTL----------PDFLEHAKEQNKELK 330
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1116 EELGR-------SRDEVTSHQKLEEERSVLNNQLLEmkkrestLKKEIDEERA---SLQKSISDTSALITQKDEELEKLR 1185
Cdd:PRK04778 331 EEIDRvkqsytlNESELESVRQLEKQLESLEKQYDE-------ITERIAEQEIaysELQEELEEILKQLEEIEKEQEKLS 403
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 2024359659 1186 NEitvlrgenasaktlqsvVKTLESDKLKLEEKVKNLEQKL 1226
Cdd:PRK04778 404 EM-----------------LQGLRKDELEAREKLERYRNKL 427
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
581-848 |
8.88e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 53.48 E-value: 8.88e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 581 SEEALRKEIKTLSASNERMGKEN------ESLKTKLDHANKENSDVIEL---WKSKLESA-IA-SHQQAMEELKVSFNKG 649
Cdd:COG3206 92 SRPVLERVVDKLNLDEDPLGEEAsreaaiERLRKNLTVEPVKGSNVIEIsytSPDPELAAaVAnALAEAYLEQNLELRRE 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 650 VGAQTAEFaeLKTQMEKVK---LDYENEMSNLKLKQ-----ENEKSQHLKEIEALKAKLLEVTEEkeqtLENLKAKLESV 721
Cdd:COG3206 172 EARKALEF--LEEQLPELRkelEEAEAALEEFRQKNglvdlSEEAKLLLQQLSELESQLAEARAE----LAEAEARLAAL 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 722 EDQhLVEMEDTLNKLQEAEIkVSNLTKELQGKEQKLLDLEKNLSA-----------VNQVKDSLEKELQLLKEKFTSAVD 790
Cdd:COG3206 246 RAQ-LGSGPDALPELLQSPV-IQQLRAQLAELEAELAELSARYTPnhpdvialraqIAALRAQLQQEAQRILASLEAELE 323
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 2024359659 791 GAENAQRAMQETINKLNQKEEQFALMSSELEQLKSNLTVMETKLKEREEREQQLTEAK 848
Cdd:COG3206 324 ALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAE 381
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
697-860 |
1.03e-06 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 53.24 E-value: 1.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 697 KAKLLEVTEEKEQTLENLKAKLESVEDQHLVEM-EDTLNKLQEAEIKVSNLTKELQGKEQKLLDLEKNlsavnqvkdsLE 775
Cdd:PRK12704 30 EAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAkEEIHKLRNEFEKELRERRNELQKLEKRLLQKEEN----------LD 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 776 KELQLLKEKftsavdgaenaQRAMQETINKLNQKEEQFALMSSELEQLKSN-LTVME--TKLKEREEREQQLTEAKVKLE 852
Cdd:PRK12704 100 RKLELLEKR-----------EEELEKKEKELEQKQQELEKKEEELEELIEEqLQELEriSGLTAEEAKEILLEKVEEEAR 168
|
....*...
gi 2024359659 853 NDIAEIMK 860
Cdd:PRK12704 169 HEAAVLIK 176
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
936-1239 |
1.14e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 53.20 E-value: 1.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 936 MKKQMETSQNQYKDLQAKYEKETSEMITKHDADIKGFKQNLLDAEEALKAAQKKNDELETQAEELKKQAEQAKADKRAEE 1015
Cdd:pfam17380 278 VQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1016 VLQTMEKVTKEKDAIHQEKIETLASLENSRQ-TNEKLQNELDMLKQNNLKNEEELTKSKELLNL--------ENKKVEEL 1086
Cdd:pfam17380 358 RKRELERIRQEEIAMEISRMRELERLQMERQqKNERVRQELEAARKVKILEEERQRKIQQQKVEmeqiraeqEEARQREV 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1087 K-------KEFEALKLAAAQKSQQLAAL-QEENVKLAEELGRSRDEVTSHQKLEEERSVLNNQL-------LEMKKREST 1151
Cdd:pfam17380 438 RrleeeraREMERVRLEEQERQQQVERLrQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELeerkqamIEEERKRKL 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1152 LKKEIDEERASL----QKSISDTSALITQKDEELEKLRNEITVLRGEnasaktlQSVVKTLESDKLKLEEKVKNLEQKLK 1227
Cdd:pfam17380 518 LEKEMEERQKAIyeeeRRREAEEERRKQQEMEERRRIQEQMRKATEE-------RSRLEAMEREREMMRQIVESEKARAE 590
|
330
....*....|..
gi 2024359659 1228 AKSEQPLTVTSP 1239
Cdd:pfam17380 591 YEATTPITTIKP 602
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
427-1160 |
1.35e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 53.26 E-value: 1.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 427 ELLNQLEEEKRKVEDLQFRVEEESitkGDLERK-RQISEDPENTQTKLE-----HARIKELEQSLLFEKTKADKLQRELE 500
Cdd:pfam01576 5 EEMQAKEEELQKVKERQQKAESEL---KELEKKhQQLCEEKNALQEQLQaetelCAEAEEMRARLAARKQELEEILHELE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 501 dTRVATVSEKSRIMELER--------DLALRVKEVAELRGRLESSK---------HIDDV----DTSLSLLQEISSLQEK 559
Cdd:pfam01576 82 -SRLEEEEERSQQLQNEKkkmqqhiqDLEEQLDEEEAARQKLQLEKvtteakikkLEEDIllleDQNSKLSKERKLLEER 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 560 MA------AAGKEHQREMSSLKEKFESS----EEALRKEiktlsasnERMGKENESLKTKLDHANKENSDVIELWKSKLE 629
Cdd:pfam01576 161 ISeftsnlAEEEEKAKSLSKLKNKHEAMisdlEERLKKE--------EKGRQELEKAKRKLEGESTDLQEQIAELQAQIA 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 630 SAIASHQQAMEELKVSFNKGVGAQTAEFA------ELKTQMEKVKLDYENEMSnLKLKQENEKSQHLKEIEALKAKLL-- 701
Cdd:pfam01576 233 ELRAQLAKKEEELQAALARLEEETAQKNNalkkirELEAQISELQEDLESERA-ARNKAEKQRRDLGEELEALKTELEdt 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 702 --------EVTEEKEQTLENLKAKLESVEDQHLVEMEDTLNKLQEAeikVSNLTKELQGKEQKLLDLEKNLSAVNQVKDS 773
Cdd:pfam01576 312 ldttaaqqELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQA---LEELTEQLEQAKRNKANLEKAKQALESENAE 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 774 LEKELQLLKEKFTSAVDGAENAQRAMQETINKLNQKEEQFALMSSELEQLKSNLTVMETKLKEREEREQQLTEAKVKLEN 853
Cdd:pfam01576 389 LQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLES 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 854 DIAEIMKSSGDSSAQLMKMNDELrlkeRQLEQIQLELTKANEKAVQLQKNVEQTAQKAEQSQQETLKTHQEE---LKKMQ 930
Cdd:pfam01576 469 QLQDTQELLQEETRQKLNLSTRL----RQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDagtLEALE 544
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 931 DQLTDMKKQMETSQNQYKDLQAKYEK--ETSEMITKHDADIKGFKQNLLDAEEALKAAQKKNDELetQAEELKKQAEQAK 1008
Cdd:pfam01576 545 EGKKRLQRELEALTQQLEEKAAAYDKleKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQM--LAEEKAISARYAE 622
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1009 ADKRAEEvlQTMEKVTKEKdAIHQEKIETLASLENSRQTNEKLQNELDML---KQNNLKNEEELTKSKELLnleNKKVEE 1085
Cdd:pfam01576 623 ERDRAEA--EAREKETRAL-SLARALEEALEAKEELERTNKQLRAEMEDLvssKDDVGKNVHELERSKRAL---EQQVEE 696
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024359659 1086 LKKEFEAL--KLAAAQKsqqlAALQEENVKLAEELGRSRDEVTSHQKLEEERSVLNNQLLEMkkrestlKKEIDEER 1160
Cdd:pfam01576 697 MKTQLEELedELQATED----AKLRLEVNMQALKAQFERDLQARDEQGEEKRRQLVKQVREL-------EAELEDER 762
|
|
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
568-1049 |
1.90e-06 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 52.34 E-value: 1.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 568 QREMSSLKEKFESSEEALRKEIKTLsasnERMGKENESLKTKLDHANKE------NSDVIELWKSKLESAIASHQQ--AM 639
Cdd:pfam05701 48 QEEIPEYKKQSEAAEAAKAQVLEEL----ESTKRLIEELKLNLERAQTEeaqakqDSELAKLRVEEMEQGIADEASvaAK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 640 EELKVSFNKGVGAqTAEFAELKTQMEKVKLDYENemsnlkLKQENEKSQHLKEIEALKAKLLEVTEEkEQTLE--NLKAK 717
Cdd:pfam05701 124 AQLEVAKARHAAA-VAELKSVKEELESLRKEYAS------LVSERDIAIKRAEEAVSASKEIEKTVE-ELTIEliATKES 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 718 LESVEDQHLVEMEDTLNKLQEAEIKVSNLTKELQGKEQKLLDLEKNLSAVNQVKDSLEKE---LQLLKEKFTSAVDGAEN 794
Cdd:pfam05701 196 LESAHAAHLEAEEHRIGAALAREQDKLNWEKELKQAEEELQRLNQQLLSAKDLKSKLETAsalLLDLKAELAAYMESKLK 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 795 aQRAMQETINKLNQKEEQFALMSS--ELEQLKSN----------LTVMETKLKEREEREQQlteakvklenDIAEIMKSS 862
Cdd:pfam05701 276 -EEADGEGNEKKTSTSIQAALASAkkELEEVKANiekakdevncLRVAAASLRSELEKEKA----------ELASLRQRE 344
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 863 GDSSAQLMKMNDELRLKERQLEQIQLELTKANEKAVQLQKNVEQTAQKAE------QSQQETLKTHQEELKK-------M 929
Cdd:pfam05701 345 GMASIAVSSLEAELNRTKSEIALVQAKEKEAREKMVELPKQLQQAAQEAEeakslaQAAREELRKAKEEAEQakaaastV 424
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 930 QDQLTDMKKQMETSQNQYK----DLQAKYEKETSEMITKHDADIKGFKQNLLDAEEALKAAQKKNDELETQAEELKKQAE 1005
Cdd:pfam05701 425 ESRLEAVLKEIEAAKASEKlalaAIKALQESESSAESTNQEDSPRGVTLSLEEYYELSKRAHEAEELANKRVAEAVSQIE 504
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 2024359659 1006 QAKadkraEEVLQTMEKVTKEKDAIHQEKIETLASLENSRQTNE 1049
Cdd:pfam05701 505 EAK-----ESELRSLEKLEEVNREMEERKEALKIALEKAEKAKE 543
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
574-1171 |
2.22e-06 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 52.53 E-value: 2.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 574 LKEKFESSEEALRKEIKTLSASnERMGKENESLKTKLDHANKENSDVIELWKSKLESAIASHQQAMEELKVSFNKGVgaq 653
Cdd:PTZ00440 377 LNNLFNKLFGDLKEKIETLLDS-EYFISKYTNIISLSEHTLKAAEDVLKENSQKIADYALYSNLEIIEIKKKYDEKI--- 452
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 654 taefAELKTQMEKVKlDYENEMSNLKLKQENEKSQ--HLKEIEALKAKLLEVTEEKEQTLENLKAKLESVEDQhLVEMED 731
Cdd:PTZ00440 453 ----NELKKSINQLK-TLISIMKSFYDLIISEKDSmdSKEKKESSDSNYQEKVDELLQIINSIKEKNNIVNNN-FKNIED 526
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 732 TLNKLQEAEIKVSNLTKELQGKEQKLLDLEKNLSAVNQVKDSLEKELQLLKEKftsaVDGAENAQRAMQETINKLNQKEE 811
Cdd:PTZ00440 527 YYITIEGLKNEIEGLIELIKYYLQSIETLIKDEKLKRSMKNDIKNKIKYIEEN----VDHIKDIISLNDEIDNIIQQIEE 602
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 812 QFALMSSELEQLKSNLTVMETKLKEreereqqlteakvKLENDIAEIMKSSGDSSAQLMKMNDELRLKERQLEQIQLELT 891
Cdd:PTZ00440 603 LINEALFNKEKFINEKNDLQEKVKY-------------ILNKFYKGDLQELLDELSHFLDDHKYLYHEAKSKEDLQTLLN 669
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 892 KANEKAVQLQK----NVEQTAQKAEQSQQEtLKTHQEELkkMQDQLTDMKKQMETSQNQYKdlqAKYEKETSEM--ITKH 965
Cdd:PTZ00440 670 TSKNEYEKLEFmksdNIDNIIKNLKKELQN-LLSLKENI--IKKQLNNIEQDISNSLNQYT---IKYNDLKSSIeeYKEE 743
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 966 DADIKGFKQNLLDAEEALKAAQKKNDELETQAEELkkqaeqakadkrAEEVLQTMEKVTKEKDAIHQEKIETLASLENSR 1045
Cdd:PTZ00440 744 EEKLEVYKHQIINRKNEFILHLYENDKDLPDGKNT------------YEEFLQYKDTILNKENKISNDINILKENKKNNQ 811
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1046 QTNEKLQNELDMLKQNNLKNEEELTKSKELLNLENK--KVEELKKEFEALKLAAAQKSQQLAALQ--------------- 1108
Cdd:PTZ00440 812 DLLNSYNILIQKLEAHTEKNDEELKQLLQKFPTEDEnlNLKELEKEFNENNQIVDNIIKDIENMNkniniiktlniainr 891
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024359659 1109 -EENVKLAEELGRSRDEVTshQKLEEERSVLNNQLLEMKKRESTLKKEIDEERASLQKSISDTS 1171
Cdd:PTZ00440 892 sNSNKQLVEHLLNNKIDLK--NKLEQHMKIINTDNIIQKNEKLNLLNNLNKEKEKIEKQLSDTK 953
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1031-1313 |
2.42e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 2.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1031 HQEKIETLASLENSRQTNEKLQN-------ELDMLKQNNLKNEEELTKSKELLNLE----NKKVEELKKEFEALKLAAAQ 1099
Cdd:TIGR02168 171 KERRKETERKLERTRENLDRLEDilnelerQLKSLERQAEKAERYKELKAELRELElallVLRLEELREELEELQEELKE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1100 KSQQLAALQEENVKLAEELGRSRDEVTS-HQKLEEERSVLNNQLLEMKKRESTlKKEIDEERASLQKSISDTSALITQKD 1178
Cdd:TIGR02168 251 AEEELEELTAELQELEEKLEELRLEVSElEEEIEELQKELYALANEISRLEQQ-KQILRERLANLERQLEELEAQLEELE 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1179 EELEKLRNEITVLRGENASaktLQSVVKTLESDKLKLEEKVKNLEQKLKAKSEQPLTVtspSGDIAANLLQDESAEDKQQ 1258
Cdd:TIGR02168 330 SKLDELAEELAELEEKLEE---LKEELESLEAELEELEAELEELESRLEELEEQLETL---RSKVAQLELQIASLNNEIE 403
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 2024359659 1259 EID-FLNSVIVDLQRRNEELNLKIQRMCEAALNGNEEETINYDSEEEGLSKKTPRL 1313
Cdd:TIGR02168 404 RLEaRLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERL 459
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
728-921 |
2.56e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 51.37 E-value: 2.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 728 EMEDTLNKLQEAEIKVSNLTKELQGKEQKLLDLEKNLSAVNQVKDSLEKELQLLKEKFTSAVDGAENAQRAMQETINKLN 807
Cdd:COG3883 24 ELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSGGSVS 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 808 QKEeqFALMSSELEQLKSNLTVMET-------KLKEREEREQQLTEAKVKLENDIAEIMKSSGDSSAQLMKMNDELRLKE 880
Cdd:COG3883 104 YLD--VLLGSESFSDFLDRLSALSKiadadadLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQE 181
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2024359659 881 RQLEQIQLELTKANEKAVQLQKNVEQTAQKAEQSQQETLKT 921
Cdd:COG3883 182 ALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAA 222
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
357-531 |
2.57e-06 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 51.78 E-value: 2.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 357 ALKEKQQHIEQLLAE---RDLERAEVAKATS-----------HVGEIEQELALVRDGHDRHVLEMEAKMDQLRAMVEAAD 422
Cdd:COG2433 347 AYKNKFERVEKKVPPdvdRDEVKARVIRGLSieealeeliekELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLE 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 423 REKVELLNQLEEEKRKVEDLQFRVEEESItkgdlERKRQISEDPEntQTKLEhARIKELEQSLLFEKTKADKLQRELEDT 502
Cdd:COG2433 427 AEVEELEAELEEKDERIERLERELSEARS-----EERREIRKDRE--ISRLD-REIERLERELEEERERIEELKRKLERL 498
|
170 180 190
....*....|....*....|....*....|
gi 2024359659 503 RvatvseksRIMELE-RDLALRVKEVAELR 531
Cdd:COG2433 499 K--------ELWKLEhSGELVPVKVVEKFT 520
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
801-1077 |
2.62e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 52.22 E-value: 2.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 801 ETINKLNQKEEQFALMSSELEQLKSNLTVMETKLKEREEREQQLTEAKVKLENDIAEIMKSSGDSSAQLMKMND------ 874
Cdd:PRK11281 46 DALNKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLStlslrq 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 875 -ELRLKER--QLEQIQLELTKANEKAVQLQKNVEQtAQKA-EQSQQETlkthqEELKKMQDQLTDMKKQMETSQnqykdl 950
Cdd:PRK11281 126 lESRLAQTldQLQNAQNDLAEYNSQLVSLQTQPER-AQAAlYANSQRL-----QQIRNLLKGGKVGGKALRPSQ------ 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 951 QAKYEKETSEMITKHDadikgFKQNLLDAEEALKA-AQKKNDELETQAEELKKQAE---QAKADKRAEEVLQTMEKVTKE 1026
Cdd:PRK11281 194 RVLLQAEQALLNAQND-----LQRKSLEGNTQLQDlLQKQRDYLTARIQRLEHQLQllqEAINSKRLTLSEKTVQEAQSQ 268
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 2024359659 1027 KDAihqekietlasleNSRQTNEKLQNELDmlkqNNLKNEEELTKSKELLN 1077
Cdd:PRK11281 269 DEA-------------ARIQANPLVAQELE----INLQLSQRLLKATEKLN 302
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
705-946 |
2.76e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 52.22 E-value: 2.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 705 EEKEQTLENL-KAKLESVED----QHLVEMEDTLNKLQEAEIKVSNLTKELQGKEQKLLDLEKNLSAvnqvkdslekelq 779
Cdd:PRK11281 39 ADVQAQLDALnKQKLLEAEDklvqQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEA------------- 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 780 lLKEKFTSAVDgAENAQRAMQETINKLNQKEEQFALMSSELEQLKSNLTVMETklkeREEREQ-QLTEAKVKLEnDIAEI 858
Cdd:PRK11281 106 -LKDDNDEETR-ETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQT----QPERAQaALYANSQRLQ-QIRNL 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 859 MKSSGDSSAQL-----MKMNDELRLKERQLEQIQLELTKANEKAVQLQKNVEQTAQKAEQSQQEtLKTHQEELKkmQDQL 933
Cdd:PRK11281 179 LKGGKVGGKALrpsqrVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQ-LQLLQEAIN--SKRL 255
|
250
....*....|...
gi 2024359659 934 TDMKKQMETSQNQ 946
Cdd:PRK11281 256 TLSEKTVQEAQSQ 268
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
874-1097 |
2.98e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.84 E-value: 2.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 874 DELRLKERQLEQIQLELTKANEKAVQLQKNVE-------QTAQKAEQSQQETLKTHQEELKKMQDQLTDMKKQMETSQNQ 946
Cdd:COG4913 245 EDAREQIELLEPIRELAERYAAARERLAELEYlraalrlWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 947 YKDLQAKYEKETSEmitkhdaDIKGFKQNLLDAEEALKAAQKKNDELETQAEELKKQAEQAKAD--KRAEEVLQTMEKVT 1024
Cdd:COG4913 325 LDELEAQIRGNGGD-------RLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEfaALRAEAAALLEALE 397
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024359659 1025 KEKDAIHQEKIETLASLENSRQTNEKLQNELDMLKQNNLKNEEELTKSKELLNlenkkvEELKKEFEALKLAA 1097
Cdd:COG4913 398 EELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALA------EALGLDEAELPFVG 464
|
|
| PRK10246 |
PRK10246 |
exonuclease subunit SbcC; Provisional |
791-1152 |
3.10e-06 |
|
exonuclease subunit SbcC; Provisional
Pssm-ID: 182330 [Multi-domain] Cd Length: 1047 Bit Score: 52.11 E-value: 3.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 791 GAENAQRAMQETINKLNQ---KEEQFALMSSELEQLKSNLTVMETKLKEREEREQQLTEAKVKLENDIAEIMKSSGDSSA 867
Cdd:PRK10246 333 HAAKQSAELQAQQQSLNTwlaEHDRFRQWNNELAGWRAQFSQQTSDREQLRQWQQQLTHAEQKLNALPAITLTLTADEVA 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 868 QLMkmndELRLKERQLEQiqlELTKANEKAVQLQKNVEQTaqkaeqsqQETLKTHQEELKKMQDQLTDMKKQMETSQNQY 947
Cdd:PRK10246 413 AAL----AQHAEQRPLRQ---RLVALHGQIVPQQKRLAQL--------QVAIQNVTQEQTQRNAALNEMRQRYKEKTQQL 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 948 KDLQAKYEKEtsEMItkhdADIKGFKQNL----------------LDAEEALK--AAQKKNDELETQAEELKKQAEQ--- 1006
Cdd:PRK10246 478 ADVKTICEQE--ARI----KDLEAQRAQLqagqpcplcgstshpaVEAYQALEpgVNQSRLDALEKEVKKLGEEGAAlrg 551
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1007 -----AKADKRAEEVLQTMekvTKEKDAIHQEKIETLASLENSRQTNEKLQNELDMLKQnnlkNEEELTKSKELLNLENK 1081
Cdd:PRK10246 552 qldalTKQLQRDESEAQSL---RQEEQALTQQWQAVCASLNITLQPQDDIQPWLDAQEE----HERQLRLLSQRHELQGQ 624
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024359659 1082 KVEELKKEFEALKLAAAQKSQQLAALQEENVKLAEE------LGRSRDEVTSHQKLEEERSVLNNQLLEMKKRESTL 1152
Cdd:PRK10246 625 IAAHNQQIIQYQQQIEQRQQQLLTALAGYALTLPQEdeeaswLATRQQEAQSWQQRQNELTALQNRIQQLTPLLETL 701
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
550-961 |
3.32e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.69 E-value: 3.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 550 LQEISSLQEKMAAAGKEHQ--REMSSLKEKFESSEEALRKEIKTLSASNERMGK--ENESLKTKLDHANKENSDVIELWK 625
Cdd:COG4717 70 LKELKELEEELKEAEEKEEeyAELQEELEELEEELEELEAELEELREELEKLEKllQLLPLYQELEALEAELAELPERLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 626 sKLESAIASHQQAMEELKvsfnkgvgAQTAEFAELKTQMEkvklDYENEMSNLKLKQENEKSQHLKEIEALKAKLLEVTE 705
Cdd:COG4717 150 -ELEERLEELRELEEELE--------ELEAELAELQEELE----ELLEQLSLATEEELQDLAEELEELQQRLAELEEELE 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 706 EKEQTLENLKAKLESVEDQHLVEMEDTLNKLQEAEIKVSNLTKELQGKEQKLLDLEKNLSAVNQVKDSL--EKELQLLKE 783
Cdd:COG4717 217 EAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLlaLLFLLLARE 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 784 KFTSAVDGAENAQRAMQETINKLNQKEEQFALM---SSELEQLKSNLTVMETKLKEREEREQQLTEAKVK-LENDIAEIM 859
Cdd:COG4717 297 KASLGKEAEELQALPALEELEEEELEELLAALGlppDLSPEELLELLDRIEELQELLREAEELEEELQLEeLEQEIAALL 376
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 860 KSSGDSS----AQLMKMNDELRLKERQLEQIQLELTKANEKAVQLQKNVEQTAQKAE-QSQQETLKTHQEELKKMQDQLT 934
Cdd:COG4717 377 AEAGVEDeeelRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEElEELEEELEELEEELEELREELA 456
|
410 420
....*....|....*....|....*....
gi 2024359659 935 DMKKQMET--SQNQYKDLQAKYEKETSEM 961
Cdd:COG4717 457 ELEAELEQleEDGELAELLQELEELKAEL 485
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
788-1184 |
3.43e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 51.88 E-value: 3.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 788 AVDGAENAQRAMQETINKLNQKEEQFALMSSELEQLKSNLTVMETKLKereereqqlteakvklendiaeimkssgDSSA 867
Cdd:PRK04863 284 HLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQ----------------------------AASD 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 868 QLMKMNDELRLKErQLEQIQLELTKANEKAVQlQKNVEQTAQKAEQSQQETLKTHQEELKKMQDQLTDMKKQMETSQN-- 945
Cdd:PRK04863 336 HLNLVQTALRQQE-KIERYQADLEELEERLEE-QNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTra 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 946 -QYKDLQAKYEK-------------ETSEMITKHDADIKGFKQNLLDAEEALKAAQKKNDELETQAEELKKQA---EQAK 1008
Cdd:PRK04863 414 iQYQQAVQALERakqlcglpdltadNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAgevSRSE 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1009 ADKRAEEVLQTMEKVTKEKDAIHQEKIEtLASLE---NSRQTNEKLQNELDMLKQNNLKNEEELTKSKELLNLENKKVEE 1085
Cdd:PRK04863 494 AWDVARELLRRLREQRHLAEQLQQLRMR-LSELEqrlRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSE 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1086 LKKEFEALKLAAAQKSQQLAALQEENVKLAEELGRSRDEVT-----SHQKLEEERSVLN--NQLLEMKKRESTLKKEIDE 1158
Cdd:PRK04863 573 SVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALArlreqSGEEFEDSQDVTEymQQLLERERELTVERDELAA 652
|
410 420
....*....|....*....|....*.
gi 2024359659 1159 ERASLQKSISDTSALITQKDEELEKL 1184
Cdd:PRK04863 653 RKQALDEEIERLSQPGGSEDPRLNAL 678
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1050-1221 |
3.79e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 49.54 E-value: 3.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1050 KLQNELDMLKQNNLKNEEELTKSKELLNLENKKVEELKKEFEALKLAAAQKSQQLAALQEENVKLAEELGRSRD--EVTS 1127
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNnkEYEA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1128 HQK----LEEERSVLNNQLLEMKKRESTLKKEIDEERASLQKSISDTSALITQKDEELEKLRNEITVLRGEnasaktLQS 1203
Cdd:COG1579 94 LQKeiesLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAE------REE 167
|
170
....*....|....*...
gi 2024359659 1204 VVKTLESDKLKLEEKVKN 1221
Cdd:COG1579 168 LAAKIPPELLALYERIRK 185
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
679-941 |
4.52e-06 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 51.44 E-value: 4.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 679 KLKQENEKSQhlKEIEALKAKLLEvTEEKEQTLENLKAKLESVEDQHLVEMEDTLNKLQEAEIKVSNLTKELQgkeqkLL 758
Cdd:PLN02939 160 KILTEKEALQ--GKINILEMRLSE-TDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELD-----VL 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 759 DLEkNLSavnqvkdsLEKELQLLKEKFTSavdgaenaqraMQETINKLNQKEEQFALMSSELEQLKSNLTVMETKLKERE 838
Cdd:PLN02939 232 KEE-NML--------LKDDIQFLKAELIE-----------VAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLS 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 839 EREQQLTEAKVKLENDIAEIMKSSGDSSAQLMKMNDELRLKERQLEQiqlELTKAN------EKAVQLQKNVEQTAQKAE 912
Cdd:PLN02939 292 PLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEA---SLKEANvskfssYKVELLQQKLKLLEERLQ 368
|
250 260 270
....*....|....*....|....*....|..
gi 2024359659 913 QSQQET---LKTHQEELKKMQDQLTDMKKQME 941
Cdd:PLN02939 369 ASDHEIhsyIQLYQESIKEFQDTLSKLKEESK 400
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
456-916 |
4.82e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.92 E-value: 4.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 456 LERKRQISEDPENTQTKLEHARIKELEQSL---------LFEKTKA-DKLQRELEDTRVATVSEKSRIMELERDLALR-- 523
Cdd:COG4717 51 LEKEADELFKPQGRKPELNLKELKELEEELkeaeekeeeYAELQEElEELEEELEELEAELEELREELEKLEKLLQLLpl 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 524 VKEVAELRGRLESSkhIDDVDTSLSLLQEISSLQEKMAAAGKEHQREMSSLKEKFESSEEALRKEIKTLSASNERMGKEN 603
Cdd:COG4717 131 YQELEALEAELAEL--PERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRL 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 604 ESLKTKLDHANKENSDVielwKSKLESAIASHQQAMEELKVSFNKGVGAQTAEFAELKTQMEKVKLDYENE--------- 674
Cdd:COG4717 209 AELEEELEEAQEELEEL----EEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIagvlflvlg 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 675 -MSNLKLKQENEKSQHLKEIEALKAkLLEVTEEKEQTLENLKAKL---ESVEDQHLVEMEDTLNKLQEAEIKVSNLTKEL 750
Cdd:COG4717 285 lLALLFLLLAREKASLGKEAEELQA-LPALEELEEEELEELLAALglpPDLSPEELLELLDRIEELQELLREAEELEEEL 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 751 QgkEQKLLDLEKNLSAVNQVKDslEKELQLLKEKFTSAVDgAENAQRAMQETINKLNqKEEQFALMSSELEQLKSNLTVM 830
Cdd:COG4717 364 Q--LEELEQEIAALLAEAGVED--EEELRAALEQAEEYQE-LKEELEELEEQLEELL-GELEELLEALDEEELEEELEEL 437
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 831 ETKLKEREEREQQLTEAKVKLENDIAEIMkssgdSSAQLMKMNDELRLKERQLEqiqlELTKANEKAVQLQKNVEQTAQK 910
Cdd:COG4717 438 EEELEELEEELEELREELAELEAELEQLE-----EDGELAELLQELEELKAELR----ELAEEWAALKLALELLEEAREE 508
|
....*.
gi 2024359659 911 AEQSQQ 916
Cdd:COG4717 509 YREERL 514
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
360-1182 |
4.90e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 51.49 E-value: 4.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 360 EKQQHIEQLL-AERDL--ERAEVAKATSHVGEIEQELALVRDGHDRHVLEMEAKMDQLRAMVEA-ADREKVEllnQLEEE 435
Cdd:COG3096 279 ERRELSERALeLRRELfgARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASDHLNLVQTAlRQQEKIE---RYQED 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 436 krkVEDLQFRVEEESITKGDLERKRQISEDpENTQTKLEHARIK----ELEQSLLFEKTKADKLQ---RELEDTRVATVS 508
Cdd:COG3096 356 ---LEELTERLEEQEEVVEEAAEQLAEAEA-RLEAAEEEVDSLKsqlaDYQQALDVQQTRAIQYQqavQALEKARALCGL 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 509 EKSRIMELERDLA-LRVKEVAELRGRLESSKHIDDVDTSLSLLQEISSLQEKMAAagkEHQREmsslkEKFESSEEALRk 587
Cdd:COG3096 432 PDLTPENAEDYLAaFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKIAG---EVERS-----QAWQTARELLR- 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 588 EIKTLSASNERMgkenESLKTKLDHANKEnsdvielwksklesaiASHQQAMEELKVSFNKGVGAQTAEFAELktqmekv 667
Cdd:COG3096 503 RYRSQQALAQRL----QQLRAQLAELEQR----------------LRQQQNAERLLEEFCQRIGQQLDAAEEL------- 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 668 kldyenemsnlklkqENEKSQHLKEIEALKAKLLEVTEEK---EQTLENLKAKLESVEDQ--HLVEMEDTLNKLQE---A 739
Cdd:COG3096 556 ---------------EELLAELEAQLEELEEQAAEAVEQRselRQQLEQLRARIKELAARapAWLAAQDALERLREqsgE 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 740 EIKVSNltkELQGKEQKLLDLEKNLSA----VNQVKDSLEKELQLLkekftSAVDGAENAQramqetinkLNQKEEQFA- 814
Cdd:COG3096 621 ALADSQ---EVTAAMQQLLEREREATVerdeLAARKQALESQIERL-----SQPGGAEDPR---------LLALAERLGg 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 815 -LMSSELEQLK--------------------SNLTVMETKLKERE---------EREQQLTEAKV----KLENdiaeimk 860
Cdd:COG3096 684 vLLSEIYDDVTledapyfsalygparhaivvPDLSAVKEQLAGLEdcpedlyliEGDPDSFDDSVfdaeELED------- 756
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 861 ssgdssAQLMKMND-ELRL-------------KERQLEQIQLELTKANEKAVQLQKNVeQTAQKAEQSQQETLKTH---- 922
Cdd:COG3096 757 ------AVVVKLSDrQWRYsrfpevplfgraaREKRLEELRAERDELAEQYAKASFDV-QKLQRLHQAFSQFVGGHlava 829
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 923 -----QEELKKMQDQLTDMKKQMETSQNQYKDLQAKYE--KETSEMITK------------HDADIKGFKQNLLDAEEA- 982
Cdd:COG3096 830 fapdpEAELAALRQRRSELERELAQHRAQEQQLRQQLDqlKEQLQLLNKllpqanlladetLADRLEELREELDAAQEAq 909
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 983 --LKAAQKKNDELETQA----------EELKKQAEQAK-----ADKRAEEVLQTMEKVTkekdaiHQEKIETLASLENSR 1045
Cdd:COG3096 910 afIQQHGKALAQLEPLVavlqsdpeqfEQLQADYLQAKeqqrrLKQQIFALSEVVQRRP------HFSYEDAVGLLGENS 983
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1046 QTNEKLQNELDMLkqnnlknEEELTKSKELLNLENKKVEELKKEFEALKLAAAQKSQQLAALQEEnvklAEELGrSRDEV 1125
Cdd:COG3096 984 DLNEKLRARLEQA-------EEARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQE----LEELG-VQADA 1051
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1126 TSHQKLEEERSVLNNQLLEMKKRESTLKKEI---DEERASLQKSISDTSALITQKDEELE 1182
Cdd:COG3096 1052 EAEERARIRRDELHEELSQNRSRRSQLEKQLtrcEAEMDSLQKRLRKAERDYKQEREQVV 1111
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
688-1241 |
5.05e-06 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 50.91 E-value: 5.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 688 QHLKEIEALKAKLLEVTEEKEQTLENLKAKLESV---EDQHLVEMEDTLNKLQEAEIKVSNLTKELQGKEQKLLDL---- 760
Cdd:pfam07111 73 QELRRLEEEVRLLRETSLQQKMRLEAQAMELDALavaEKAGQAEAEGLRAALAGAEMVRKNLEEGSQRELEEIQRLhqeq 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 761 --------EKNLSAVNQVKDSLEKELQLLKEKFTSAVDGAENAQRAMQETINKLNQKEEQFALMSSELEQLKSNL---TV 829
Cdd:pfam07111 153 lssltqahEEALSSLTSKAEGLEKSLNSLETKRAGEAKQLAEAQKEAELLRKQLSKTQEELEAQVTLVESLRKYVgeqVP 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 830 METKLKEREEREQQLTEAKVKLENDIAEIMKSSGDSSAQLMKMNDELRLKERQL-EQIQ----LELTKANEKAVQLQKNV 904
Cdd:pfam07111 233 PEVHSQTWELERQELLDTMQHLQEDRADLQATVELLQVRVQSLTHMLALQEEELtRKIQpsdsLEPEFPKKCRSLLNRWR 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 905 EQTAQKAEQSQQETLKtHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEKETSEMITKHdADIKGFKQNLLDAEEALK 984
Cdd:pfam07111 313 EKVFALMVQLKAQDLE-HRDSVKQLRGQVAELQEQVTSQSQEQAILQRALQDKAAEVEVER-MSAKGLQMELSRAQEARR 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 985 AAQKKNDELETQ---------AEELKKQAEQAKADKRAEEV-------------LQTMEKVTKEKDAIHQEKIETLASLE 1042
Cdd:pfam07111 391 RQQQQTASAEEQlkfvvnamsSTQIWLETTMTRVEQAVARIpslsnrlsyavrkVHTIKGLMARKVALAQLRQESCPPPP 470
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1043 NSRQTNEKLQNELDMLKQNNLKNEEELTKSKELLNLE---------------NKKVEELKKEFEALKLAAAQKSQQLAAL 1107
Cdd:pfam07111 471 PAPPVDADLSLELEQLREERNRLDAELQLSAHLIQQEvgrareqgeaerqqlSEVAQQLEQELQRAQESLASVGQQLEVA 550
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1108 QEENVKLAEELGRSRDEVTSHQ---------KLEEERSVLNNQLLEMKKRESTLKKEIDEERASLQKsISDTSALITQKD 1178
Cdd:pfam07111 551 RQGQQESTEEAASLRQELTQQQeiygqalqeKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQ-IQHRATQEKERN 629
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024359659 1179 EELEKLRNEitvlrGENASAKTLQSVVKTLESDKlKLEEKVKNLEQKLKAKSEQPLTVTSPSG 1241
Cdd:pfam07111 630 QELRRLQDE-----ARKEEGQRLARRVQELERDK-NLMLATLQQEGLLSRYKQQRLLAVLPSG 686
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
915-1158 |
5.27e-06 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 50.78 E-value: 5.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 915 QQETLKTHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEketsEMITKHDADIKGFKQNLLDAEEALKAAQKkndELE 994
Cdd:PHA02562 179 LNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQ----NKYDELVEEAKTIKAEIEELTDELLNLVM---DIE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 995 TQAEELKKqAEQAKADKRAEevLQTMEKVTKekdaIHQEKIETLASLENSRQTNEKLQNELDMLKQNNLKNEEELTKSKE 1074
Cdd:PHA02562 252 DPSAALNK-LNTAAAKIKSK--IEQFQKVIK----MYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDE 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1075 LLNLENKkVEELKKEFEALKLAAAQKSQQLAALQEENVKLAEELGRSRDEVTSHqklEEERSVLNNQLLEMKKRESTLKK 1154
Cdd:PHA02562 325 LEEIMDE-FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDN---AEELAKLQDELDKIVKTKSELVK 400
|
....
gi 2024359659 1155 EIDE 1158
Cdd:PHA02562 401 EKYH 404
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
376-928 |
5.42e-06 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 50.89 E-value: 5.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 376 RAEVAKATSHVGEIEQELALVRDGHDRHVLEMEAKMDQLRAMVEaadrEKVELLNQLEEEKRKVEDLQFRVEEESITKGD 455
Cdd:pfam05557 1 RAELIESKARLSQLQNEKKQMELEHKRARIELEKKASALKRQLD----RESDRNQELQKRIRLLEKREAEAEEALREQAE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 456 LERKRQISEDPENTQTKLEHARIKELEQSLLFEKTKADKLQRELEDTRV---ATVSEKSRIMELERDLALRVKEVAELRG 532
Cdd:pfam05557 77 LNRLKKKYLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELelqSTNSELEELQERLDLLKAKASEAEQLRQ 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 533 RLESSKH-IDDVDTSLSLLQEISSLQEKMAAAGKEHQREMSSLKEkFESSEEALRKEIKTLSASNERMG---KENESLKT 608
Cdd:pfam05557 157 NLEKQQSsLAEAEQRIKELEFEIQSQEQDSEIVKNSKSELARIPE-LEKELERLREHNKHLNENIENKLllkEEVEDLKR 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 609 KLDHANKENSDVI--ELWKSKLESAIASHQQAMEELKVSF----------------NKGVGAQTAEFAELKTQMEKVKLD 670
Cdd:pfam05557 236 KLEREEKYREEAAtlELEKEKLEQELQSWVKLAQDTGLNLrspedlsrrieqlqqrEIVLKEENSSLTSSARQLEKARRE 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 671 YENEMSNL--KLKQENEKSQHLKE-IEALKAKLLEVTEEKeqtlENLKAKLESVEDQhlVEMEDTLNKLQEAEIKVSNLT 747
Cdd:pfam05557 316 LEQELAQYlkKIEDLNKKLKRHKAlVRRLQRRVLLLTKER----DGYRAILESYDKE--LTMSNYSPQLLERIEEAEDMT 389
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 748 KELQGK----EQKLLDLEKNLSAVNQVKDSLEKELQLLKEKFTSAVDGAENaqramqETINKLNQKEEQFALMSSELEQL 823
Cdd:pfam05557 390 QKMQAHneemEAQLSVAEEELGGYKQQAQTLERELQALRQQESLADPSYSK------EEVDSLRRKLETLELERQRLREQ 463
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 824 KSNLTVMETKLKEREEREQQLTEAKVKLENDIAEIMKSSGDSSAQLMKMNDELRLKERQLEQIQ--------LELTKANE 895
Cdd:pfam05557 464 KNELEMELERRCLQGDYDPKKTKVLHLSMNPAAEAYQQRKNQLEKLQAEIERLKRLLKKLEDDLeqvlrlpeTTSTMNFK 543
|
570 580 590
....*....|....*....|....*....|...
gi 2024359659 896 KAVQLQKNVEqTAQKAEQSQQETLKTHQEELKK 928
Cdd:pfam05557 544 EVLDLRKELE-SAELKNQRLKEVFQAKIQEFRD 575
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
585-1232 |
5.74e-06 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 51.37 E-value: 5.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 585 LRKEIKTLSASNERMGKENeslktkLDHANKENSDVIELWKSK---LESAIASHQQAMEELKVsFNKGVGAQTAEFAELK 661
Cdd:PTZ00440 693 LKKELQNLLSLKENIIKKQ------LNNIEQDISNSLNQYTIKyndLKSSIEEYKEEEEKLEV-YKHQIINRKNEFILHL 765
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 662 TQMEKVKLDYEN---EMSNLKLKQENEKSQHLKEIEALKAKLlEVTEEKEQTLENLKAKLESVEDQHLVEMEDTLNKLQE 738
Cdd:PTZ00440 766 YENDKDLPDGKNtyeEFLQYKDTILNKENKISNDINILKENK-KNNQDLLNSYNILIQKLEAHTEKNDEELKQLLQKFPT 844
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 739 A--EIKVSNLTKELQGKEQKLLDLEKNLSAVNQVKDSLeKELQLLKEKFTSAVDGAENAQRAMQETINKLNQKEEQFA-- 814
Cdd:PTZ00440 845 EdeNLNLKELEKEFNENNQIVDNIIKDIENMNKNINII-KTLNIAINRSNSNKQLVEHLLNNKIDLKNKLEQHMKIINtd 923
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 815 --LMSSELEQLKSNLTvmetklKEREEREQQLTEAKVKLENDIAEIMKSSGDSSAQLMKMNDELRL-----KERQLEQIQ 887
Cdd:PTZ00440 924 niIQKNEKLNLLNNLN------KEKEKIEKQLSDTKINNLKMQIEKTLEYYDKSKENINGNDGTHLekldkEKDEWEHFK 997
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 888 LELTKANEKAVQLQKNVEQTAQKAEQSQQETLKTHQEELKKmqdqltDMKKQMETSQNQYKDLQAKYE-KETSEMITKHD 966
Cdd:PTZ00440 998 SEIDKLNVNYNILNKKIDDLIKKQHDDIIELIDKLIKEKGK------EIEEKVDQYISLLEKMKTKLSsFHFNIDIKKYK 1071
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 967 ADIkgFKQNLLDAEEALKAAQKKNDELETQAEELKKQAEQAKADKRAEEVLQTMEKVTKEKD--AIHQEKIETLASLENS 1044
Cdd:PTZ00440 1072 NPK--IKEEIKLLEEKVEALLKKIDENKNKLIEIKNKSHEHVVNADKEKNKQTEHYNKKKKSleKIYKQMEKTLKELENM 1149
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1045 RQTNEKLQNeldmlkQNNLKNEEELTKSKELLNLENKKVEELKKEFEALKLAAAQKSQQLAALQEENVKLAEELGRS--R 1122
Cdd:PTZ00440 1150 NLEDITLNE------VNEIEIEYERILIDHIVEQINNEAKKSKTIMEEIESYKKDIDQVKKNMSKERNDHLTTFEYNayY 1223
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1123 DEVTSHQKLEEERSVLNNQLLEMKKRESTLK--KEIDEERASLQKSISDTSALITQKDEELEKLRNEITVLRGENASAKT 1200
Cdd:PTZ00440 1224 DKATASYENIEELTTEAKGLKGEANRSTNVDelKEIKLQVFSYLQQVIKENNKMENALHEIKNMYEFLISIDSEKILKEI 1303
|
650 660 670
....*....|....*....|....*....|....
gi 2024359659 1201 LQSVVKTLE-SDKLKLE-EKVKNLEQKLKAKSEQ 1232
Cdd:PTZ00440 1304 LNSTKKAEEfSNDAKKElEKTDNLIKQVEAKIEQ 1337
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
810-1045 |
6.38e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 6.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 810 EEQFALMSSELEQLKSnltvMETKLKEREEREQQLTEAKvklenDIAEIMKSSGDSSAQLMKMNDELRL--KERQLEQIQ 887
Cdd:COG4913 224 FEAADALVEHFDDLER----AHEALEDAREQIELLEPIR-----ELAERYAAARERLAELEYLRAALRLwfAQRRLELLE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 888 LELTKANEKAVQLQKNVEQTAQKAEQSQQETLKTHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEketsemitKHDA 967
Cdd:COG4913 295 AELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRA--------RLEA 366
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2024359659 968 DIKGFKQNLLDAEEALKAAQKKNDELETQAEELKKQAEQAKADKRAEEvlqtmEKVTKEKDAIHQEkietLASLENSR 1045
Cdd:COG4913 367 LLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAAL-----RDLRRELRELEAE----IASLERRK 435
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1154-1284 |
6.80e-06 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 50.63 E-value: 6.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1154 KEIDEERASLQKSISDTSALITQKDEELEKLRNEITVLRGENASaktlqsvvktLESDKLKLEEKVKNLEQKLK-AKSEQ 1232
Cdd:COG2433 388 KELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEE----------LEAELEEKDERIERLERELSeARSEE 457
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 2024359659 1233 PltvtspsgdiaANLLQDESAEDKQQEIDFLNSVIVDLQRRNEELNLKIQRM 1284
Cdd:COG2433 458 R-----------REIRKDREISRLDREIERLERELEEERERIEELKRKLERL 498
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
771-1019 |
8.32e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 49.83 E-value: 8.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 771 KDSLEKELQLLKEKFTSAVDGAENAQRAMQETINKLNQKEEQFALMSSELEQLKSNLTVMETKLKEREER-EQQLTEAKV 849
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREElGERARALYR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 850 K-LENDIAEIMKSSGDSSAQLMKMNDELRLKERQLEQIQlELTKANEKAVQLQKNVEQTAQKAEQSQQEtLKTHQEELKK 928
Cdd:COG3883 98 SgGSVSYLDVLLGSESFSDFLDRLSALSKIADADADLLE-ELKADKAELEAKKAELEAKLAELEALKAE-LEAAKAELEA 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 929 MQDQLTDMKKQMETSQNQYKDLQAKYEKETSEMITKHDADIKGFKQNLLDAEEALKAAQKKNDELETQAEELKKQAEQAK 1008
Cdd:COG3883 176 QQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAGAAGAA 255
|
250
....*....|.
gi 2024359659 1009 ADKRAEEVLQT 1019
Cdd:COG3883 256 GAAAGSAGAAG 266
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
802-1001 |
9.12e-06 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 50.01 E-value: 9.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 802 TINKLNQK-EEQFALMSSELEQLKSNLTVMETKLKEREEREQQLTEAKVKLENDIAEIMKSSGDSSAQLMKMNDELRLKE 880
Cdd:PHA02562 189 KIDHIQQQiKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIK 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 881 RQLEQIQLE-----------------------LTKANEKAVQLQKNVEQ--TAQKAEQSQQETLKTHQEELKKMQDQLTD 935
Cdd:PHA02562 269 SKIEQFQKVikmyekggvcptctqqisegpdrITKIKDKLKELQHSLEKldTAIDELEEIMDEFNEQSKKLLELKNKIST 348
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2024359659 936 MKKQMETSQNQYKDLQAKYEKETSEMITkHDADIKGFKQNLLDAEEALKAAQKKNDELETQAEELK 1001
Cdd:PHA02562 349 NKQSLITLVDKAKKVKAAIEELQAEFVD-NAEELAKLQDELDKIVKTKSELVKEKYHRGIVTDLLK 413
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
975-1226 |
9.36e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.45 E-value: 9.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 975 NLLDAEEALKAAQKKNDELETQAEELKKQAEQ-AKADKRAEEVLQTMEKVTKEKDAIHQEKIETLASLENSR---QTNEK 1050
Cdd:PRK03918 156 GLDDYENAYKNLGEVIKEIKRRIERLEKFIKRtENIEELIKEKEKELEEVLREINEISSELPELREELEKLEkevKELEE 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1051 LQNELDMLKQNNLKNEEELTKSKELLNLENKKVEELKKEFEALKLAA---------AQKSQQLAALQEENVK----LAEE 1117
Cdd:PRK03918 236 LKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVkelkelkekAEEYIKLSEFYEEYLDelreIEKR 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1118 LGRSRDEVTSHQKLEEERSVLNNQLLEMKKRESTLKKEIDEERASLQKsisdtSALITQKDEELEKLRNEITVLRGENAS 1197
Cdd:PRK03918 316 LSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHEL-----YEEAKAKKEELERLKKRLTGLTPEKLE 390
|
250 260
....*....|....*....|....*....
gi 2024359659 1198 AKtlqsvVKTLESDKLKLEEKVKNLEQKL 1226
Cdd:PRK03918 391 KE-----LEELEKAKEEIEEEISKITARI 414
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1029-1232 |
1.24e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 1.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1029 AIHQEKIETLASLENSRQTNEKLQNELDMLKQNNLKNEEELTKSKELLNLENKKVEELKKEFEALKLAAAQKSQQLAALQ 1108
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1109 EENVKLAEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKRESTLKKEIDEERASLQKSISDTSALITQKDEELEKLRNEI 1188
Cdd:COG4942 97 AELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2024359659 1189 TVLRGENASAKtlqsvvKTLESDKLKLEEKVKNLEQKLKAKSEQ 1232
Cdd:COG4942 177 EALLAELEEER------AALEALKAERQKLLARLEKELAELAAE 214
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
874-1054 |
1.32e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 49.06 E-value: 1.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 874 DELRLKERQLEQIQLELTKANEKAVQLQKNVEQTAQKAEQSQQEtLKTHQEELKKMQDQLTDMKKQMETSQNQYKD-LQA 952
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAE-LEALQAEIDKLQAEIAEAEAEIEERREELGErARA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 953 KYEKETS-----------------------EMITKHDAD-IKGFKQNLLDAEEALKAAQKKNDELETQAEEL-------- 1000
Cdd:COG3883 95 LYRSGGSvsyldvllgsesfsdfldrlsalSKIADADADlLEELKADKAELEAKKAELEAKLAELEALKAELeaakaele 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2024359659 1001 KKQAEQAKADKRAEEVLQTMEKVTKEKDAIHQEKIETLASLENSRQTNEKLQNE 1054
Cdd:COG3883 175 AQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAA 228
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
892-1231 |
1.41e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 49.68 E-value: 1.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 892 KANEKAVQLQKNVEQTAQKAEQSQQETLKthqeELKKMQDQLTDMKKQMETSQNQYKDLqakyeKETSEMITKHDADIKG 971
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLR----EINEISSELPELREELEKLEKEVKEL-----EELKEEIEELEKELES 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 972 FKQNLLDAEEALKAAQKKNDELETQAEELKkqaEQAKADKRAEEVLQTMEKVTKEKDAIHQEKIETLASLENSRQTNEKL 1051
Cdd:PRK03918 250 LEGSKRKLEEKIRELEERIEELKKEIEELE---EKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGI 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1052 QNELDMLKQNNLKNEEELTKSKELLnlenKKVEELKKEFEALKLAAAQKSQQLAALQEENVKLAEELGRSRDEV-TSHQK 1130
Cdd:PRK03918 327 EERIKELEEKEERLEELKKKLKELE----KRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELeKAKEE 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1131 LEEERSVLNNQLLEMKKRESTLKKEIDEERASLQKSISDTSALitqKDEELEKLRNEITvlrgenASAKTLQSVVKTLES 1210
Cdd:PRK03918 403 IEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGREL---TEEHRKELLEEYT------AELKRIEKELKEIEE 473
|
330 340
....*....|....*....|.
gi 2024359659 1211 DKLKLEEKVKNLEQKLKAKSE 1231
Cdd:PRK03918 474 KERKLRKELRELEKVLKKESE 494
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
565-721 |
1.43e-05 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 49.64 E-value: 1.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 565 KEHQREMSSLKEKFE---SSEEALRKEIKTLSASNERM---GKENESLKTKLDHANKENSDVIELWK------SKLESAI 632
Cdd:pfam05667 331 QQREEELEELQEQLEdleSSIQELEKEIKKLESSIKQVeeeLEELKEQNEELEKQYKVKKKTLDLLPdaeeniAKLQALV 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 633 ASHQQAMEELKVSFNKGVGAQTAEFAELKTQmekvkldyenemsnlKLKQENEKSQHLKEIEALKAKLLEVTEE---KEQ 709
Cdd:pfam05667 411 DASAQRLVELAGQWEKHRVPLIEEYRALKEA---------------KSNKEDESQRKLEEIKELREKIKEVAEEakqKEE 475
|
170
....*....|..
gi 2024359659 710 TLENLKAKLESV 721
Cdd:pfam05667 476 LYKQLVAEYERL 487
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
817-1285 |
1.44e-05 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 49.35 E-value: 1.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 817 SSELEQLKSNLTVMETKLKeREEREQQltEAKVKLENDIAEIMKSSGDSSAQLMKMNDELRLKERQLEQIQLELTKANEK 896
Cdd:pfam05557 1 RAELIESKARLSQLQNEKK-QMELEHK--RARIELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAEL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 897 AVQLQKNVEQTAQKAEQSQQETLKTHqEELKKMQDQLTDMKKQMETSQNQYKDLQAKYE--KETSEMITKHDADIKGFKQ 974
Cdd:pfam05557 78 NRLKKKYLEALNKKLNEKESQLADAR-EVISCLKNELSELRRQIQRAELELQSTNSELEelQERLDLLKAKASEAEQLRQ 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 975 NLLDAEEALKAAQKKNDELEtqaEELKKQAEQAKADKRAEEVLQTMEKVTKEKDAIHQEKietlASLENSRQTNEKLQNE 1054
Cdd:pfam05557 157 NLEKQQSSLAEAEQRIKELE---FEIQSQEQDSEIVKNSKSELARIPELEKELERLREHN----KHLNENIENKLLLKEE 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1055 LDMLKQNnLKNEEELTKSKELLNLENKKVEELKKEFEALKLAAAQK-------SQQLAALQEENVKLAEELG----RSRD 1123
Cdd:pfam05557 230 VEDLKRK-LEREEKYREEAATLELEKEKLEQELQSWVKLAQDTGLNlrspedlSRRIEQLQQREIVLKEENSsltsSARQ 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1124 EVTSHQKLEEERSVLNNQLLEMK--------------KRESTLKKEIDEERASLQK-----SISDTSALITQKDEELEKL 1184
Cdd:pfam05557 309 LEKARRELEQELAQYLKKIEDLNkklkrhkalvrrlqRRVLLLTKERDGYRAILESydkelTMSNYSPQLLERIEEAEDM 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1185 RNEITVLRGEnasaktLQSVVKTLESDKLKLEEKVKNLEQKLKAKSEQPLTVTSPSgdiaanllQDESAEDKQQEIDFLN 1264
Cdd:pfam05557 389 TQKMQAHNEE------MEAQLSVAEEELGGYKQQAQTLERELQALRQQESLADPSY--------SKEEVDSLRRKLETLE 454
|
490 500
....*....|....*....|.
gi 2024359659 1265 SVIVDLQRRNEELNLKIQRMC 1285
Cdd:pfam05557 455 LERQRLREQKNELEMELERRC 475
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
622-1006 |
1.79e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 49.57 E-value: 1.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 622 ELWKSKleSAIASHQQAMEELKvsfnkgvgaqtAEFAELKTQMEKVKLDYENEMSNLKLKQENEKSQhlKEIEALKAKLL 701
Cdd:PRK04863 294 ELYTSR--RQLAAEQYRLVEMA-----------RELAELNEAESDLEQDYQAASDHLNLVQTALRQQ--EKIERYQADLE 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 702 EVTEEkeqtlenLKAKLESVEDQHLvEMEDTLNKLQEAEIKVSNLTKELQGKEQKLLDLEKNLSAVNQVKDSLEKELQLL 781
Cdd:PRK04863 359 ELEER-------LEEQNEVVEEADE-QQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLC 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 782 kekftsavdgaenaqRAMQETINKLNQKEEQFAlmsSELEQLKSNLTVMETKLKEREEREQQLTEAKVKLENDIAEIMKS 861
Cdd:PRK04863 431 ---------------GLPDLTADNAEDWLEEFQ---AKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRS 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 862 SGDSSAQ-LMKMNDELRLKERQLEQIQLELTKAnEKAVQLQKNVEQTAQKAEQS-----------------QQETLKTHQ 923
Cdd:PRK04863 493 EAWDVAReLLRRLREQRHLAEQLQQLRMRLSEL-EQRLRQQQRAERLLAEFCKRlgknlddedeleqlqeeLEARLESLS 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 924 EELKKMQDQLTDMKKQMETSQNQYKDL----------QAKYEK---------ETSEMITkhdadikGFKQNLLdaeEALK 984
Cdd:PRK04863 572 ESVSEARERRMALRQQLEQLQARIQRLaarapawlaaQDALARlreqsgeefEDSQDVT-------EYMQQLL---ERER 641
|
410 420
....*....|....*....|..
gi 2024359659 985 AAQKKNDELETQAEELKKQAEQ 1006
Cdd:PRK04863 642 ELTVERDELAARKQALDEEIER 663
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
831-1049 |
2.42e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 48.29 E-value: 2.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 831 ETKLKEREEREQQLTEAKVKLENDIAEIMKSSGDSSAQLMKMNDELRLKERQLEQIQLELTKANEKAVQLQKNVEQTAQK 910
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 911 AEQSQQ--------------ETLKTHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEKETSEMITKhdadikgfKQNL 976
Cdd:COG3883 95 LYRSGGsvsyldvllgsesfSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEAL--------KAEL 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024359659 977 LDAEEALKAAQKKNDELETQAEELKKQAEQAKADKRAEEVLQTMEKVTKEKDAIHQEKIETLASLENSRQTNE 1049
Cdd:COG3883 167 EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 239
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
355-942 |
3.67e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.43 E-value: 3.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 355 QEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALvrdghdrhvlemEAKMDQLRAMVEAADREKVELLNQLEE 434
Cdd:TIGR00618 337 QSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTL------------TQHIHTLQQQKTTLTQKLQSLCKELDI 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 435 EKRKVEDLQFRVEEESITKGDLERKRQiSEDPENTQTKLEHARIKELEQSLLFEKTKADKLQRELEDTRVATVSEKSRIM 514
Cdd:TIGR00618 405 LQREQATIDTRTSAFRDLQGQLAHAKK-QQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHL 483
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 515 ELERDLALRVKEVAELRGR----LESSKHIDDVDTSLSLLQEISSLQEKMAAAGKEHQREMsslkEKFESSEEALRKEIK 590
Cdd:TIGR00618 484 QETRKKAVVLARLLELQEEpcplCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSE----EDVYHQLTSERKQRA 559
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 591 TLSASNERMgKENESLKTKLDHANKENSDVIElwksKLESAIASHQQAMEELKVSFnkgvgaqtaefaELKTQMEKVKLD 670
Cdd:TIGR00618 560 SLKEQMQEI-QQSFSILTQCDNRSKEDIPNLQ----NITVRLQDLTEKLSEAEDML------------ACEQHALLRKLQ 622
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 671 YENEMSNLKLKQENEKSQHLKEIEALKAKLLEVTEEKEqtlenlKAKLESVEDQHLVEMEDTLNKLQEAEIKVSNLTKEL 750
Cdd:TIGR00618 623 PEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERV------REHALSIRVLPKELLASRQLALQKMQSEKEQLTYWK 696
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 751 QGKEQKLLDLEKNLsavnQVKDSLEKELQLLKEKFTSAVDGAENAQRAMQETINKLnQKEEQFALMSSELEQLKSNLTVM 830
Cdd:TIGR00618 697 EMLAQCQTLLRELE----THIEEYDREFNEIENASSSLGSDLAAREDALNQSLKEL-MHQARTVLKARTEAHFNNNEEVT 771
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 831 ETklkerEEREQQLTEAKVKLENDIAEIMKSSGdssaqlmkmndELRLKERQLEQI----QLELTKANEKAVQLQKNVEQ 906
Cdd:TIGR00618 772 AA-----LQTGAELSHLAAEIQFFNRLREEDTH-----------LLKTLEAEIGQEipsdEDILNLQCETLVQEEEQFLS 835
|
570 580 590
....*....|....*....|....*....|....*...
gi 2024359659 907 TAQKAEQSQQE--TLKTHQEELKKMQDQLTDMKKQMET 942
Cdd:TIGR00618 836 RLEEKSATLGEitHQLLKYEECSKQLAQLTQEQAKIIQ 873
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
333-603 |
3.80e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.53 E-value: 3.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 333 RTGLLTETSSRYARKISGTTALQEA---LKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALVRDGHDR---HVLE 406
Cdd:TIGR02169 690 LSSLQSELRRIENRLDELSQELSDAsrkIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKEleaRIEE 769
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 407 MEAKMDQLRAMVEA-ADREKVELLNQLEEEKRKVEDLQFRVEE-----ESITKGDLERKRQISEDPENTQTKLEH--ARI 478
Cdd:TIGR02169 770 LEEDLHKLEEALNDlEARLSHSRIPEIQAELSKLEEEVSRIEArlreiEQKLNRLTLEKEYLEKEIQELQEQRIDlkEQI 849
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 479 KELEQSLLFEKTKADKLQRELEDTRVATVSEKSRIMELERDLALRVKEVAELRGRLESSK-HIDDVDTSLSLLQE-ISSL 556
Cdd:TIGR02169 850 KSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEaQIEKKRKRLSELKAkLEAL 929
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 2024359659 557 QEKMAAAGKEHQREMSSLKEkfESSEEALRKEIKTLSASNERMGKEN 603
Cdd:TIGR02169 930 EEELSEIEDPKGEDEEIPEE--ELSLEDVQAELQRVEEEIRALEPVN 974
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
992-1237 |
4.26e-05 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 47.93 E-value: 4.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 992 ELETQAEELKKQAEQAK--ADKRAEEVL-QTMEKVTKEKDAIHQEKIETLA---SLENSRQ------TNEKLQNELDMLK 1059
Cdd:PLN03229 433 ELEGEVEKLKEQILKAKesSSKPSELALnEMIEKLKKEIDLEYTEAVIAMGlqeRLENLREefskanSQDQLMHPVLMEK 512
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1060 QNNLKNE--EELTKSKELLNLENKKveELKKEFEALKLAAAQKSQQLAALQEENVKLAEELGR----SRDEVTSHQKLEE 1133
Cdd:PLN03229 513 IEKLKDEfnKRLSRAPNYLSLKYKL--DMLNEFSRAKALSEKKSKAEKLKAEINKKFKEVMDRpeikEKMEALKAEVASS 590
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1134 ERSVLNNQLLEMKKRESTLKKEIDEERASLQKSISDTSALITQKD-------------EELEKLRNEITVLRGENASAKT 1200
Cdd:PLN03229 591 GASSGDELDDDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNkdtaeqtpppnlqEKIESLNEEINKKIERVIRSSD 670
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 2024359659 1201 LQSVVKTLESDKLK--------LEEKVKNLEQKLKAKSEQPLTVT 1237
Cdd:PLN03229 671 LKSKIELLKLEVAKasktpdvtEKEKIEALEQQIKQKIAEALNSS 715
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
955-1229 |
5.57e-05 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 46.83 E-value: 5.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 955 EKETSEMITKHDADIKGFKQNLLDAEEALKAAQKKNDELETQAEELKKQAEQAKADKRAE-EVLQTMEKVTKEKDAIHQE 1033
Cdd:COG1340 10 LEELEEKIEELREEIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREKRDELnEKVKELKEERDELNEKLNE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1034 KIETLASLENSRQTNEKLQNELDMLKQNNLKNEEELTKSKELLNLENK---KVEELKKEFEALKlAAAQKSQQLAALQEE 1110
Cdd:COG1340 90 LREELDELRKELAELNKAGGSIDKLRKEIERLEWRQQTEVLSPEEEKElveKIKELEKELEKAK-KALEKNEKLKELRAE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1111 NVKLAEELGRSRDEVTshqKLEEERSVLNNQLLEMKKRESTLKKEIDE---ERASLQKSISDTSALITQKDEELEKLRNE 1187
Cdd:COG1340 169 LKELRKEAEEIHKKIK---ELAEEAQELHEEMIELYKEADELRKEADElhkEIVEAQEKADELHEEIIELQKELRELRKE 245
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 2024359659 1188 ITVLRGENASAKtlqsvvktLESDKLKLEEKVKNLEQKLKAK 1229
Cdd:COG1340 246 LKKLRKKQRALK--------REKEKEELEEKAEEIFEKLKKG 279
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
760-1089 |
5.62e-05 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 47.20 E-value: 5.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 760 LEKNLSAVNQVKDSLEKELQLLKEKFTSAVDGAENAQRAMQETINKLNQKEEQFALMSSELEQLKSNLTVMETKLKEREE 839
Cdd:COG4372 29 LSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 840 REQQLTEAKVKLENDIAEIMKSSGDSSAQLMKMNDELRLKERQLEQIQLELTKANEKAVQLQKNVEQTAQKAEQSQQETL 919
Cdd:COG4372 109 EAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDEL 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 920 KTHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEKETSEMITKHDADIKGFKQNLLDAEEALKAAQKKNDELETQAEE 999
Cdd:COG4372 189 LKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAIL 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1000 LKKQAEQAKADKRAEEVLQTMEKVTKEKDAIHQEKIETLASLENSRQTNEKLQNELDMLKQNNLKNEEELTKSKELLNLE 1079
Cdd:COG4372 269 VEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLV 348
|
330
....*....|
gi 2024359659 1080 NKKVEELKKE 1089
Cdd:COG4372 349 GLLDNDVLEL 358
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
691-1009 |
7.10e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 47.64 E-value: 7.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 691 KEIEALKAKLLEVTEEKE------QTLENLKAKLESVEDQHL---------VEMEDTLNKLQEAEIKVSNLTKELQGKEQ 755
Cdd:PRK04863 786 KRIEQLRAEREELAERYAtlsfdvQKLQRLHQAFSRFIGSHLavafeadpeAELRQLNRRRVELERALADHESQEQQQRS 865
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 756 KLLDLEKNLSAVNQV--------KDSLEKELQLLKEKftsaVDGAENAQRAMQETINKLNQKEEQFALMSSELEQLksnl 827
Cdd:PRK04863 866 QLEQAKEGLSALNRLlprlnllaDETLADRVEEIREQ----LDEAEEAKRFVQQHGNALAQLEPIVSVLQSDPEQF---- 937
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 828 tvmETKLKEREEREQQLTEAKVKLEnDIAEIMKS----SGDSSAQLMKMNDEL--RLKERqLEQIQLELTKANEKAVQLQ 901
Cdd:PRK04863 938 ---EQLKQDYQQAQQTQRDAKQQAF-ALTEVVQRrahfSYEDAAEMLAKNSDLneKLRQR-LEQAEQERTRAREQLRQAQ 1012
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 902 ------KNVEQTAQKAEQSQQETLKTHQEELKKMQDQLT-DMKKQMETSQNQ-YKDLQAKYEKETSemitkhdadikgFK 973
Cdd:PRK04863 1013 aqlaqyNQVLASLKSSYDAKRQMLQELKQELQDLGVPADsGAEERARARRDElHARLSANRSRRNQ------------LE 1080
|
330 340 350
....*....|....*....|....*....|....*.
gi 2024359659 974 QNLLDAEEALKAAQKKNDELETQAEELKKQAEQAKA 1009
Cdd:PRK04863 1081 KQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKA 1116
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
337-595 |
7.67e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 7.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 337 LTETSSRYARKISGTTALQEALKEKQQHIEQLlAERDLERAEVAKATSHVGEIEQELALVRDGHDRhVLEMEAKMDQLRA 416
Cdd:COG4913 622 LEEELAEAEERLEALEAELDALQERREALQRL-AEYSWDEIDVASAEREIAELEAELERLDASSDD-LAALEEQLEELEA 699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 417 MVEAADREKVELLNQLEEEKRKVEDLQfrveeesitkGDLERKRQISEDPENTQTKLEHARIKELEQSLLFEKtKADKLQ 496
Cdd:COG4913 700 ELEELEEELDELKGEIGRLEKELEQAE----------EELDELQDRLEAAEDLARLELRALLEERFAAALGDA-VERELR 768
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 497 RELEDTRVATVSEKSRIMELERDLALRVKEVAELRGRlESSKHIDDVDTSLSLLQEISS-----LQEKMAAAGKEH-QRE 570
Cdd:COG4913 769 ENLEERIDALRARLNRAEEELERAMRAFNREWPAETA-DLDADLESLPEYLALLDRLEEdglpeYEERFKELLNENsIEF 847
|
250 260
....*....|....*....|....*
gi 2024359659 571 MSSLKEKFESSEEALRKEIKTLSAS 595
Cdd:COG4913 848 VADLLSKLRRAIREIKERIDPLNDS 872
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
724-906 |
8.16e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.69 E-value: 8.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 724 QHLVEMEDTLNKLQEAEIKVSNLTKELQGKEQKLLDLEKNLSAVNQVKDSLEKELQLLKEKFTSAVDGAENAQRAMQETI 803
Cdd:COG1579 7 RALLDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 804 NklnqkEEQFALMSSELEQLKSNLTVMETKLKEREEREQQLTEAKVKLENDIAEIMKSSGDSSAQLmkmndelrlkERQL 883
Cdd:COG1579 87 N-----NKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAEL----------DEEL 151
|
170 180
....*....|....*....|...
gi 2024359659 884 EQIQLELTKANEKAVQLQKNVEQ 906
Cdd:COG1579 152 AELEAELEELEAEREELAAKIPP 174
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
835-1117 |
8.36e-05 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 46.92 E-value: 8.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 835 KEREEREQQLTEAKVKLenDIAEIMKSSGDSSAQLMKmndelrlkeRQLEQIQLELTKANEKAVQLQKNVEQTAQKAEQS 914
Cdd:pfam05262 185 ALREDNEKGVNFRRDMT--DLKERESQEDAKRAQQLK---------EELDKKQIDADKAQQKADFAQDNADKQRDEVRQK 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 915 QqetlkthQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEKETSEmitkhdadikgfkqnllDAEEALKAAQKKNDELE 994
Cdd:pfam05262 254 Q-------QEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKK-----------------NDEEALKAKDHKAFDLK 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 995 TQAEELKKQAEQAKADKR------AEEVLQTMEKVTKEKDAIHQEKIETLASLENSRQTNEklQNELDMLKQNNLKNEEE 1068
Cdd:pfam05262 310 QESKASEKEAEDKELEAQkkrepvAEDLQKTKPQVEAQPTSLNEDAIDSSNPVYGLKVVDP--ITNLSELVLIDLKTEVR 387
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 2024359659 1069 LtKSKELLNLENKKVEELKKEFEALKLAAAQKSQQLAALQEENVKLAEE 1117
Cdd:pfam05262 388 L-RESAQQTIRRRGLYEREKDLVAIAITSGNAKLQLVDIDLKNLEVIKE 435
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
891-1276 |
9.44e-05 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 46.93 E-value: 9.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 891 TKANEKAVQLQKNVEQTAQKAEQSQQETLKthqeelKKMQDQLTDMKKQMETSQNQY----KDLQAKYEKE-TSEMITKH 965
Cdd:NF033838 50 SSGNESQKEHAKEVESHLEKILSEIQKSLD------KRKHTQNVALNKKLSDIKTEYlyelNVLKEKSEAElTSKTKKEL 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 966 DADIKGFKQNLLDAEEALKAAQKKNDELETQAE--------------------------------ELKKQAEQAKADKRA 1013
Cdd:NF033838 124 DAAFEQFKKDTLEPGKKVAEATKKVEEAEKKAKdqkeedrrnyptntyktleleiaesdvevkkaELELVKEEAKEPRDE 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1014 EEVLQTMEKV-TKEKDAIHQEKIET---LASLENSRQTNEKLQnelDMLKQNNLKNEEELTKSKELLNLENKKVEELKKE 1089
Cdd:NF033838 204 EKIKQAKAKVeSKKAEATRLEKIKTdreKAEEEAKRRADAKLK---EAVEKNVATSEQDKPKRRAKRGVLGEPATPDKKE 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1090 FEALKLAAAQKSQQLAALQ---EENVKLAEELGRSRDEVTSHQKLEEERSVLNN--QLLEMKKRESTLK-KEIDEERASL 1163
Cdd:NF033838 281 NDAKSSDSSVGEETLPSPSlkpEKKVAEAEKKVEEAKKKAKDQKEEDRRNYPTNtyKTLELEIAESDVKvKEAELELVKE 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1164 QKSISDTSALITQKDEELEKLRNEITVLRgenasaKTLQSVVKTLESDKLKLEE----KVKNLEQKLKAKSEQPlTVTSP 1239
Cdd:NF033838 361 EAKEPRNEEKIKQAKAKVESKKAEATRLE------KIKTDRKKAEEEAKRKAAEedkvKEKPAEQPQPAPAPQP-EKPAP 433
|
410 420 430
....*....|....*....|....*....|....*..
gi 2024359659 1240 SGDIAANLLQDESAEDKQQEIDFlnsvivdlQRRNEE 1276
Cdd:NF033838 434 KPEKPAEQPKAEKPADQQAEEDY--------ARRSEE 462
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
576-1169 |
1.05e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 46.82 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 576 EKFESSEEALRKEIKTLSASNERMGKENESLKTKLDHANKensdvIELWKSKLESAIASHQQ--AMEELKVSFNKGVgaq 653
Cdd:PRK01156 207 ADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSS-----LEDMKNRYESEIKTAESdlSMELEKNNYYKEL--- 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 654 TAEFAELKTQMEKVKLDYENEMSNLKlkqeneksqhlKEIEALKakllevteekeQTLENLKAKLESVEDQH-----LVE 728
Cdd:PRK01156 279 EERHMKIINDPVYKNRNYINDYFKYK-----------NDIENKK-----------QILSNIDAEINKYHAIIkklsvLQK 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 729 MEDTLNKLQEAEIKVSNLTKELQGKEQKLLDLEKNLSAVNQVKDSLEKELQLLKEKFTSAVDGAENAQRAMQETINKLNQ 808
Cdd:PRK01156 337 DYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINV 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 809 KEEQFalmSSELEQLKSNLTVMETKLKEREEREQQLTEAKV--KLENDIAEimkssgDSSAQLMK-MNDELRLKERQLEQ 885
Cdd:PRK01156 417 KLQDI---SSKVSSLNQRIRALRENLDELSRNMEMLNGQSVcpVCGTTLGE------EKSNHIINhYNEKKSRLEEKIRE 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 886 IQLELTKANEKAVQLQKNVEQTAQKaeqsQQETLKTHQEELKKMQDQLTDMKkqmeTSQNQYKDLQAKYEKETSEMITKH 965
Cdd:PRK01156 488 IEIEVKDIDEKIVDLKKRKEYLESE----EINKSINEYNKIESARADLEDIK----IKINELKDKHDKYEEIKNRYKSLK 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 966 DADIKGFKQNLLDAeealkAAQKKNDELET---QAEELKKQAEQAkaDKRAEEVLQTMEKVTKEKDAIHQEKIETLASLE 1042
Cdd:PRK01156 560 LEDLDSKRTSWLNA-----LAVISLIDIETnrsRSNEIKKQLNDL--ESRLQEIEIGFPDDKSYIDKSIREIENEANNLN 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1043 NSRQTNEKLQNELDMLKqnnlkneeeltkskellnlenKKVEELKKEFEALKLAAAQKSQQLAALQEENVKLAEELGRSR 1122
Cdd:PRK01156 633 NKYNEIQENKILIEKLR---------------------GKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALD 691
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 2024359659 1123 DEVTSHQKLEEERSVLNNQLLEMKKRESTLKKEIdEERASLQKSISD 1169
Cdd:PRK01156 692 DAKANRARLESTIEILRTRINELSDRINDINETL-ESMKKIKKAIGD 737
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
882-1061 |
1.05e-04 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 46.22 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 882 QLEQIQLELTkANEKAVQLQKNVEQTAQKAEQSQQETLKTHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEKETSEM 961
Cdd:PRK11637 48 QLKSIQQDIA-AKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 962 ITKHDAdikGFKQN-------LLDAEEAL-------------KAAQKKNDELETQAEEL---KKQAEQAKADKRaeEVLQ 1018
Cdd:PRK11637 127 AAQLDA---AFRQGehtglqlILSGEESQrgerilayfgylnQARQETIAELKQTREELaaqKAELEEKQSQQK--TLLY 201
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2024359659 1019 TMEKVTKEKDAIHQEKIETLASLENSRQtneKLQNELDMLKQN 1061
Cdd:PRK11637 202 EQQAQQQKLEQARNERKKTLTGLESSLQ---KDQQQLSELRAN 241
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
925-1127 |
1.43e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.98 E-value: 1.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 925 ELKKMQDQLTDMKKQMETSQNQYKDLQAKYEkETSEMITKHDADIKGFKQNLLDAEEALKAAQKkndELETQAEELKKQA 1004
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELE-ELNEEYNELQAELEALQAEIDKLQAEIAEAEA---EIEERREELGERA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1005 EQAKADKRA-------------EEVLQTMEKVTKEKDAiHQEKIETLASLensRQTNEKLQNELDMLKQNNLKNEEELTK 1071
Cdd:COG3883 93 RALYRSGGSvsyldvllgsesfSDFLDRLSALSKIADA-DADLLEELKAD---KAELEAKKAELEAKLAELEALKAELEA 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2024359659 1072 SKELLnleNKKVEELKKEFEALKLAAAQKSQQLAALQEENVKLAEELGRSRDEVTS 1127
Cdd:COG3883 169 AKAEL---EAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAA 221
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
413-1059 |
1.44e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 46.32 E-value: 1.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 413 QLRAMVEAADREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLERK--------RQISEDPENTQTKLEHARIKELEQS 484
Cdd:pfam01576 486 NLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKleedagtlEALEEGKKRLQRELEALTQQLEEKA 565
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 485 LLFEKTKADK--LQRELEDTRVATVSEKSRIMELERDLALRVKEVAElrGRLESSKHIDDVDTSLSLLQEisslQEKMAA 562
Cdd:pfam01576 566 AAYDKLEKTKnrLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAE--EKAISARYAEERDRAEAEARE----KETRAL 639
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 563 AGKEHQREMSSLKEKFESSEEALRKEIKTLSASNERMGKeneslktkldhankensDVIELWKSK--LESAIASHQQAME 640
Cdd:pfam01576 640 SLARALEEALEAKEELERTNKQLRAEMEDLVSSKDDVGK-----------------NVHELERSKraLEQQVEEMKTQLE 702
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 641 ELKVSFnkgvgaQTAEFAELKTQ--MEKVKLDYENEMSNLKLKQENEKSQHLKEIEALKAkllEVTEEKEQTLENLKAKl 718
Cdd:pfam01576 703 ELEDEL------QATEDAKLRLEvnMQALKAQFERDLQARDEQGEEKRRQLVKQVRELEA---ELEDERKQRAQAVAAK- 772
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 719 esvedqhlvemedtlnklqeaeikvsnltKELqgkEQKLLDLEKNLSAVNQVKDSLEKELQLLKEKFTSAVDGAENAQRA 798
Cdd:pfam01576 773 -----------------------------KKL---ELDLKELEAQIDAANKGREEAVKQLKKLQAQMKDLQRELEEARAS 820
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 799 MQETINKLNQKEEQFALMSSELEQLKSNLTVMETKLKEREEREQQLTEakvklendiaEIMKSSGDSSAQLmkmnDELRL 878
Cdd:pfam01576 821 RDEILAQSKESEKKLKNLEAELLQLQEDLAASERARRQAQQERDELAD----------EIASGASGKSALQ----DEKRR 886
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 879 KERQLEQIQLELTkanekavQLQKNVEQTAQKAEQSQQ--ETLKTHQEELKKMQDQLTDMKKQMEtsqNQYKDLQAKYEK 956
Cdd:pfam01576 887 LEARIAQLEEELE-------EEQSNTELLNDRLRKSTLqvEQLTTELAAERSTSQKSESARQQLE---RQNKELKAKLQE 956
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 957 ETSEMITKHDADIKGFKQNLLDAEEALKA--------------AQKKNDELETQAEELKKQAEQ-----AKADKRAEEVL 1017
Cdd:pfam01576 957 MEGTVKSKFKSSIAALEAKIAQLEEQLEQesrerqaanklvrrTEKKLKEVLLQVEDERRHADQykdqaEKGNSRMKQLK 1036
|
650 660 670 680
....*....|....*....|....*....|....*....|..
gi 2024359659 1018 QTMEKVTKEKDAIHQEKIETLASLENSRQTNEKLQNELDMLK 1059
Cdd:pfam01576 1037 RQLEEAEEEASRANAARRKLQRELDDATESNESMNREVSTLK 1078
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
702-887 |
1.53e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 46.36 E-value: 1.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 702 EVTEEKEQtLENLKAKLESVEdqhlvemedtlnklQEAEIKVSNLTKELQGKEQKLLDLEKNLSAVNQVKDSLEKElqlL 781
Cdd:PRK00409 510 LIGEDKEK-LNELIASLEELE--------------RELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEE---A 571
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 782 KEKFTSAVdgaENAQRAMQETINKLN--QKEEQFALMSSELE----QLKSNLTVMETKLKEREEREQQLT---EAKVKLE 852
Cdd:PRK00409 572 EKEAQQAI---KEAKKEADEIIKELRqlQKGGYASVKAHELIearkRLNKANEKKEKKKKKQKEKQEELKvgdEVKYLSL 648
|
170 180 190
....*....|....*....|....*....|....*....
gi 2024359659 853 NDIAEIMKSSGDSSAQ----LMKMndelRLKERQLEQIQ 887
Cdd:PRK00409 649 GQKGEVLSIPDDKEAIvqagIMKM----KVPLSDLEKIQ 683
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
658-779 |
1.54e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 45.92 E-value: 1.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 658 AELKTQMEKVKLDYENEMSNLKLKQENEKSQHLKEIEALKAKLLevteEKEQTLENLKAKLESvEDQHLVEMEDTLNKLQ 737
Cdd:PRK12704 49 KEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLL----QKEENLDRKLELLEK-REEELEKKEKELEQKQ 123
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2024359659 738 EaeiKVSNLTKELQGKEQKLLD-LEK--NLS---AVNQVKDSLEKELQ 779
Cdd:PRK12704 124 Q---ELEKKEEELEELIEEQLQeLERisGLTaeeAKEILLEKVEEEAR 168
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
546-842 |
1.55e-04 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 46.39 E-value: 1.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 546 SLSLLQEISSLQEKMAAAGKEHQREMSSLKEKFESSEEALRKEIKTLSASnermgkenESLKTKLDHANkensdviELWK 625
Cdd:PLN03229 481 AMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNY--------LSLKYKLDMLN-------EFSR 545
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 626 SKlesAIASHQQAMEELKVSFNKGVgAQTAEFAELKTQMEKVK-------------LDYENEMSNLKLKQENE------- 685
Cdd:PLN03229 546 AK---ALSEKKSKAEKLKAEINKKF-KEVMDRPEIKEKMEALKaevassgassgdeLDDDLKEKVEKMKKEIElelagvl 621
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 686 KSQHLkEIEALKAKLLEVTEEkeQTLENLKAKLESVEDQHLVEMEDTLNklqeaeikvsnlTKELQGKEQKL-LDLEKNL 764
Cdd:PLN03229 622 KSMGL-EVIGVTKKNKDTAEQ--TPPPNLQEKIESLNEEINKKIERVIR------------SSDLKSKIELLkLEVAKAS 686
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2024359659 765 SAVN-QVKDSLEKELQLLKEKFTSAVDGAEnaqraMQETINKLNQKEEQFALMSSELEQLKSNLTVMETKLKEREEREQ 842
Cdd:PLN03229 687 KTPDvTEKEKIEALEQQIKQKIAEALNSSE-----LKEKFEELEAELAAARETAAESNGSLKNDDDKEEDSKEDGSRVE 760
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
841-1125 |
1.58e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.16 E-value: 1.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 841 EQQLTEAKVKLEND-IAEIMKSSGDSSAQLMKMNDELRLKERQLEQIQLELtkaNEKAVQLQKNVEQTAqkaeqsqqetl 919
Cdd:PHA02562 189 KIDHIQQQIKTYNKnIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEEL---TDELLNLVMDIEDPS----------- 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 920 kthqEELKKMQDQLTDMKKQMETSQNQYKdlqakyeketseMITKHDAdIKGFKQNLLDAEEALKAAQKKNDELETQAEE 999
Cdd:PHA02562 255 ----AALNKLNTAAAKIKSKIEQFQKVIK------------MYEKGGV-CPTCTQQISEGPDRITKIKDKLKELQHSLEK 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1000 LKkqaeqakadkraeevlqtmekvtkekdaihqEKIETLASLENSRQTNEKLQNELdmlkQNNLKNEeeltksKELLNLE 1079
Cdd:PHA02562 318 LD-------------------------------TAIDELEEIMDEFNEQSKKLLEL----KNKISTN------KQSLITL 356
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 2024359659 1080 NKKVEELKKEFEALKLAAAQKSQQLAALQEENVKLAEELGRSRDEV 1125
Cdd:PHA02562 357 VDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEK 402
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
755-1160 |
1.69e-04 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 45.84 E-value: 1.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 755 QKLLDLEKNLSAVNQVKDSLEKELQLLKEKFtsavDGAENAQRAMQETINKLNQkeeqfalMSSELEQLKSNLTVMETKL 834
Cdd:pfam05622 14 QRCHELDQQVSLLQEEKNSLQQENKKLQERL----DQLESGDDSGTPGGKKYLL-------LQKQLEQLQEENFRLETAR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 835 KEREEREQQLTEAKVKLENDIAEIMKSSgDSSAQLMKMNDELRL---KERQLEQIQLELTKANEKAVQLQKNVEQTAQKA 911
Cdd:pfam05622 83 DDYRIKCEELEKEVLELQHRNEELTSLA-EEAQALKDEMDILREssdKVKKLEATVETYKKKLEDLGDLRRQVKLLEERN 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 912 EQSQQETLKtHQEELKKMqdqlTDMKKQMETSQNQYKDLQAKYEKETSE----------MITKHDADIKGfKQNLLDAEE 981
Cdd:pfam05622 162 AEYMQRTLQ-LEEELKKA----NALRGQLETYKRQVQELHGKLSEESKKadklefeykkLEEKLEALQKE-KERLIIERD 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 982 ALKAAqkkNDEL---ETQAEELKKQAEQAKADKRAEEVLQTMEKVTKEKDAI----HQEKIETLASLENSRQTNEKLQNE 1054
Cdd:pfam05622 236 TLRET---NEELrcaQLQQAELSQADALLSPSSDPGDNLAAEIMPAEIREKLirlqHENKMLRLGQEGSYRERLTELQQL 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1055 LDMLKQNNLKNEEELTKSKELLNLENKKVEELKKEFEALKLAA---AQKSQQLAALQEENVKLAEELGRSRDEV------ 1125
Cdd:pfam05622 313 LEDANRRKNELETQNRLANQRILELQQQVEELQKALQEQGSKAedsSLLKQKLEEHLEKLHEAQSELQKKKEQIeelepk 392
|
410 420 430
....*....|....*....|....*....|....*...
gi 2024359659 1126 ---TSHQKLEEERSVLNNQLLEMKKRESTLKKEIDEER 1160
Cdd:pfam05622 393 qdsNLAQKIDELQEALRKKDEDMKAMEERYKKYVEKAK 430
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
951-1172 |
1.91e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 1.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 951 QAKYEKETSEMITKHDADIKGFKQNLLDAEEALKAAQKKNDELETQAEELKKQAEQAKAD-KRAEEVLQTMEKVTKEKDA 1029
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQElAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1030 IHQEKIETLASLENSRQTNEKLQNELDMLKQNN-LKNEEELTKSKELLNLENKKVEELK---KEFEALKLAAAQKSQQLA 1105
Cdd:COG4942 98 ELEAQKEELAELLRALYRLGRQPPLALLLSPEDfLDAVRRLQYLKYLAPARREQAEELRadlAELAALRAELEAERAELE 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2024359659 1106 ALQEENVKLAEELGRSRDEVTS-HQKLEEERSVLNNQLLEMKKRESTLKKEIDEERASLQKSISDTSA 1172
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKlLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
911-1118 |
1.98e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.78 E-value: 1.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 911 AEQSQQETLKTHQEELKK----MQDQLTDMKKQMETSQNQYKDLQAKYE-KETSEMITKHDADIKGFKQNLLDAEEALKA 985
Cdd:COG3206 158 AEAYLEQNLELRREEARKalefLEEQLPELRKELEEAEAALEEFRQKNGlVDLSEEAKLLLQQLSELESQLAEARAELAE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 986 AQKKNDELETQAEELKKQAEQAKADKRAEEVLQTMEKVTKEKDAI-------HQEKIETLASLENSRQtneKLQNELDML 1058
Cdd:COG3206 238 AEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELsarytpnHPDVIALRAQIAALRA---QLQQEAQRI 314
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1059 KQNNLKNEEELTKSKELLNlenKKVEELKKEFEALklaaAQKSQQLAALQEEnVKLAEEL 1118
Cdd:COG3206 315 LASLEAELEALQAREASLQ---AQLAQLEARLAEL----PELEAELRRLERE-VEVAREL 366
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
658-1075 |
2.03e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 45.72 E-value: 2.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 658 AELKTQMEKVKLDYENEMSNLKLKQENEKSQhLKEIEALKAKLLEVTEEKEQTLENLKAKLESVedqhLVEMEDTLNKLQ 737
Cdd:COG5185 158 TGIIKDIFGKLTQELNQNLKKLEIFGLTLGL-LKGISELKKAEPSGTVNSIKESETGNLGSEST----LLEKAKEIINIE 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 738 EAEIKVSNLTKELQGKEQKLLDLEKNLSAVNQVKDSLEKELQLLKEKFTSAVDGAENAQRAMQETINKLNQKEEQFALMS 817
Cdd:COG5185 233 EALKGFQDPESELEDLAQTSDKLEKLVEQNTDLRLEKLGENAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKATE 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 818 SELEQLKSN--LTVMETKLKEREEREQQLTEAKVKLENDIAEIMKSSGDSSAQLMKMNdELRLKERQLEQIQLELTKANE 895
Cdd:COG5185 313 SLEEQLAAAeaEQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEV-ELSKSSEELDSFKDTIESTKE 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 896 KAVQLQKNVEQTAQKAEQSQQETLKTHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEKETSEMITKHDADIKgfkqn 975
Cdd:COG5185 392 SLDEIPQNQRGYAQEILATLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMREADEESQSRLE----- 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 976 lldaeealKAAQKKNDELETQAEELKKQAEQAKAdkraeEVLQTMEKVTKEKDAIhQEKIETLASLENsrQTNEKLQNEL 1055
Cdd:COG5185 467 --------EAYDEINRSVRSKKEDLNEELTQIES-----RVSTLKATLEKLRAKL-ERQLEGVRSKLD--QVAESLKDFM 530
|
410 420
....*....|....*....|
gi 2024359659 1056 DMLKQNNLKNEEELTKSKEL 1075
Cdd:COG5185 531 RARGYAHILALENLIPASEL 550
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
347-1225 |
2.47e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 45.81 E-value: 2.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 347 KISGTTALQEALKEKQQHIEQLLAERDLER---AEVAKATSHVGEIEQELALVRDGHDrhvLEMEAKMDQLRAMVEAADR 423
Cdd:TIGR01612 1157 DVADKAISNDDPEEIEKKIENIVTKIDKKKniyDEIKKLLNEIAEIEKDKTSLEEVKG---INLSYGKNLGKLFLEKIDE 1233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 424 EKVELLNQLEEEKRKVEDLQFRVEEESITKGDLERKRQISEDPE-----NTQTKLEHARIKELEQSLLFEKTKADKLQRE 498
Cdd:TIGR01612 1234 EKKKSEHMIKAMEAYIEDLDEIKEKSPEIENEMGIEMDIKAEMEtfnisHDDDKDHHIISKKHDENISDIREKSLKIIED 1313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 499 LedtrvatvSEKSRIMELERDLALRVkevaelrgrLESSKHIDDVDTSLS---------LLQEISSLQEKMAAAGKEHQR 569
Cdd:TIGR01612 1314 F--------SEESDINDIKKELQKNL---------LDAQKHNSDINLYLNeianiynilKLNKIKKIIDEVKEYTKEIEE 1376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 570 EMSSLKEKFESSEEALRKE-------------------------IKTLSASNERMGKENESLKTKLDHANKENSDVIELW 624
Cdd:TIGR01612 1377 NNKNIKDELDKSEKLIKKIkddinleeckskiestlddkdidecIKKIKELKNHILSEESNIDTYFKNADENNENVLLLF 1456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 625 --------------KSKLESAIASHQQAMEELKVSFNKGVGAQTaEFAELKTQMEKVKLDYE----------NEMSNLKL 680
Cdd:TIGR01612 1457 kniemadnksqhilKIKKDNATNDHDFNINELKEHIDKSKGCKD-EADKNAKAIEKNKELFEqykkdvtellNKYSALAI 1535
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 681 KQ-----ENEKSQHLKEIEALKAKLLEVTEEKEQTLENLKAKLESVEDQhlVEMEDTLNKlqeAEIKVSNLTKELQGKEQ 755
Cdd:TIGR01612 1536 KNkfaktKKDSEIIIKEIKDAHKKFILEAEKSEQKIKEIKKEKFRIEDD--AAKNDKSNK---AAIDIQLSLENFENKFL 1610
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 756 KLLDLEKNLSAVNQVKDSLEKELQllkekfTSAVDGaenaqramQETinKLNQKEEQFALMSSELEQLKSNLTVMETKLK 835
Cdd:TIGR01612 1611 KISDIKKKINDCLKETESIEKKIS------SFSIDS--------QDT--ELKENGDNLNSLQEFLESLKDQKKNIEDKKK 1674
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 836 EREEREQQLTeakvKLENDIAEimkssgdssaqlMKMNDELRLKERQLEQIQLELTKANEKAVQLQKNVEQTAQKAEQSQ 915
Cdd:TIGR01612 1675 ELDELDSEIE----KIEIDVDQ------------HKKNYEIGIIEKIKEIAIANKEEIESIKELIEPTIENLISSFNTND 1738
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 916 QETLKTHqEELKKMQDQLTDMKKQMETSQNqykdLQAKYEKETSemitkhdadikgfkqnlldaEEALKAAQKKNDELET 995
Cdd:TIGR01612 1739 LEGIDPN-EKLEEYNTEIGDIYEEFIELYN----IIAGCLETVS--------------------KEPITYDEIKNTRINA 1793
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 996 QAE-----ELKKQAEQAKADKRAEEVLQTMEKVTKEKDAIH----QEKIETLASLENSRQTNEKLQNELDmlkQNNLKNe 1066
Cdd:TIGR01612 1794 QNEflkiiEIEKKSKSYLDDIEAKEFDRIINHFKKKLDHVNdkftKEYSKINEGFDDISKSIENVKNSTD---ENLLFD- 1869
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1067 eELTKSKEL-LNLENKKVEELKKEFEAL-----KLAAA-----QKSQQLAALQEENVKLAEELGRSRDE----VTSHQKL 1131
Cdd:TIGR01612 1870 -ILNKTKDAyAGIIGKKYYSYKDEAEKIfinisKLANSiniqiQNNSGIDLFDNINIAILSSLDSEKEDtlkfIPSPEKE 1948
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1132 EEE----RSVLNNQLLEMKKRESTLKKEIDE-----ERASLQKSISDTSAL---ITQKDEELEKLRNEITVLRGENASAK 1199
Cdd:TIGR01612 1949 PEIytkiRDSYDTLLDIFKKSQDLHKKEQDTlniifENQQLYEKIQASNELkdtLSDLKYKKEKILNDVKLLLHKFDELN 2028
|
970 980 990
....*....|....*....|....*....|.
gi 2024359659 1200 TL----QSVVKTLESDKL-KLEEKVKNLEQK 1225
Cdd:TIGR01612 2029 KLscdsQNYDTILELSKQdKIKEKIDNYEKE 2059
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
422-807 |
2.88e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.40 E-value: 2.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 422 DREKVELLNQLEEEKRKVEDL-----QFRVEEESITKGDLERKRQISEdpENTQTKLEHARIKELEQSLLFEKTKADKLQ 496
Cdd:TIGR04523 320 EKKLEEIQNQISQNNKIISQLneqisQLKKELTNSESENSEKQRELEE--KQNEIEKLKKENQSYKQEIKNLESQINDLE 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 497 RELEDTRVATVSEKSRIMELERDLALRVKEVAELRGRLESSKhiddvdtslsllQEISSLQEKMAAAGKEHQrEMSSLKE 576
Cdd:TIGR04523 398 SKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNN------------SEIKDLTNQDSVKELIIK-NLDNTRE 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 577 KFESSEEALRKEIKTLSASNERMGKENESLKTKLDHANKENSDVIELWKsKLESAIASHQQAMEELKVSFNKgvgaQTAE 656
Cdd:TIGR04523 465 SLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVK-DLTKKISSLKEKIEKLESEKKE----KESK 539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 657 FAELKTqmEKVKLDYENEMSNLKlKQENEKSQHLKEIEALKAKLLEVTEEKEQTLENLKAklesvedqhlvEMEDTLNKL 736
Cdd:TIGR04523 540 ISDLED--ELNKDDFELKKENLE-KEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEK-----------EKKDLIKEI 605
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2024359659 737 QEAEIKVSNLTKELQGKEQKLLDLEKNLSAVNQVKDSLEKELQLLKEKFTSAVDGAENAQRAMQETINKLN 807
Cdd:TIGR04523 606 EEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKID 676
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
787-1015 |
2.91e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.82 E-value: 2.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 787 SAVDGAENAQRAMQETINKLNQKEEQFALMSSELEQLKSNLTVMETKLKEREEREQQLTEAKVKLENDIAEIMKSSGDsS 866
Cdd:COG3883 13 FADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGE-R 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 867 AQLMKMNDELRLKERQLEQIQlELTKANEKAVQLQKNVEQTAQKAEQ--SQQETLKTHQEELKKMQDQLTDMKKQMETSQ 944
Cdd:COG3883 92 ARALYRSGGSVSYLDVLLGSE-SFSDFLDRLSALSKIADADADLLEElkADKAELEAKKAELEAKLAELEALKAELEAAK 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2024359659 945 NQYKDLQAKYEKETsemitkhdADIKGFKQNLLDAEEALKAAQKKNDELETQAEELKKQAEQAKADKRAEE 1015
Cdd:COG3883 171 AELEAQQAEQEALL--------AQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAA 233
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
966-1172 |
2.96e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.82 E-value: 2.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 966 DADIKGFKQNLLDAEEALKAAQKKNDELETQAEELKKQAEQAKAD-KRAEEVLQTMEKVTKEKDAIHQEKIETLASLENS 1044
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAElEALQAEIDKLQAEIAEAEAEIEERREELGERARA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1045 RQTNEKLQNELDMLKQNN-----LKNEEELTKSKELLNLENKKVEELKKEFEALKLAAAQKSQQLAALQEENVKLAEELg 1119
Cdd:COG3883 95 LYRSGGSVSYLDVLLGSEsfsdfLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAEL- 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2024359659 1120 rsrdevtshQKLEEERSVLNNQLLEMKKRESTLKKEIDEERASLQKSISDTSA 1172
Cdd:COG3883 174 ---------EAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAA 217
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
923-1232 |
3.04e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 44.89 E-value: 3.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 923 QEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEKETSEMitkhDADIKGFKQNLLDAEEALKAAQKKNDELETQAEELKK 1002
Cdd:pfam07888 33 QNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQW----ERQRRELESRVAELKEELRQSREKHEELEEKYKELSA 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1003 QAEQAKADKRA-----EEVLQTMEKVTKEKDAIHQEKIETLASLENSRQTNEKLqneldmlkqNNLKNEEELTKSKELLN 1077
Cdd:pfam07888 109 SSEELSEEKDAllaqrAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKA---------GAQRKEEEAERKQLQAK 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1078 LENKKVE--ELKKEFEALKLAAAQKSQQLAALQEENVKLAEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKRESTLKKE 1155
Cdd:pfam07888 180 LQQTEEElrSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEE 259
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2024359659 1156 IDEERASLQKSISDTSALITQKDEELEKLRNEITVLRGENAS-AKTLQSVVKTLESDKLKLEEKVKNLEQKLKAKSEQ 1232
Cdd:pfam07888 260 LSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREGRARwAQERETLQQSAEADKDRIEKLSAELQRLEERLQEE 337
|
|
| CLIP1_ZNF |
pfam16641 |
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of ... |
1312-1329 |
3.58e-04 |
|
CLIP1 zinc knuckle; This zinc knuckle domain is found tandemly repeated at the C-terminal of the cytoplasmic linker protein CLIP1 (CLIP170). It forms a complex with the CAP-Gly domain of Dynactin.
Pssm-ID: 465212 Cd Length: 17 Bit Score: 38.99 E-value: 3.58e-04
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
890-1049 |
4.34e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.38 E-value: 4.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 890 LTKANEKAVQLqknVEQTAQKAEQSQQETLKTHQEELKKMQDQLTDMKKQMETS-QNQYKDLQAKYE--KETSEMITKHD 966
Cdd:PRK12704 33 IKEAEEEAKRI---LEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNElQKLEKRLLQKEEnlDRKLELLEKRE 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 967 ADIKGFKQNLLDAEEALKAAQKKNDELETQA-EELKK----QAEQAKadkraEEVLQTMEKVTKEKDAIHQEKIETLASL 1041
Cdd:PRK12704 110 EELEKKEKELEQKQQELEKKEEELEELIEEQlQELERisglTAEEAK-----EILLEKVEEEARHEAAVLIKEIEEEAKE 184
|
....*...
gi 2024359659 1042 ENSRQTNE 1049
Cdd:PRK12704 185 EADKKAKE 192
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
683-1008 |
4.97e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 44.66 E-value: 4.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 683 ENEKSQHLKEIEALKakllevTEEKEQTLENLKAKLESVEdqhlvEMEDTLNKLQEAEIKVSN---LTKELQgkeQKLLD 759
Cdd:PRK10929 25 EKQITQELEQAKAAK------TPAQAEIVEALQSALNWLE-----ERKGSLERAKQYQQVIDNfpkLSAELR---QQLNN 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 760 LEKNLSAV--NQVKDSLEKEL-----QLLkekftsavdgaenaqramqETINKLNQKEEQFALMSSELEQLKsnltvmet 832
Cdd:PRK10929 91 ERDEPRSVppNMSTDALEQEIlqvssQLL-------------------EKSRQAQQEQDRAREISDSLSQLP-------- 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 833 klkereereQQLTEAKvKLENDIAEIMKSSGDSSAQLmkmndelrlkerqlEQIQLELTKANEKAVQLQKNVEQTAQKAE 912
Cdd:PRK10929 144 ---------QQQTEAR-RQLNEIERRLQTLGTPNTPL--------------AQAQLTALQAESAALKALVDELELAQLSA 199
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 913 QSQQETLKTHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEKETSEMITKHDAD-----IKGFKQNlLDAEEALKAAQ 987
Cdd:PRK10929 200 NNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGDlpksiVAQFKIN-RELSQALNQQA 278
|
330 340
....*....|....*....|.
gi 2024359659 988 KKNDELETQAEELKKQAEQAK 1008
Cdd:PRK10929 279 QRMDLIASQQRQAASQTLQVR 299
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
349-614 |
5.00e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 5.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 349 SGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELAlvrdghdrhvlEMEAKMDQLRAMVEAADREKVEL 428
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLA-----------ALERRIAALARRIRALEQELAAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 429 LNQLEEEKRKVEDLQFRVEeesitkgdlERKRQISEDPENTQTKLEHARIKeleqsLLFEKTKADKLQRELEDTRVATVS 508
Cdd:COG4942 82 EAELAELEKEIAELRAELE---------AQKEELAELLRALYRLGRQPPLA-----LLLSPEDFLDAVRRLQYLKYLAPA 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 509 EKSRIMELERDLAlrvkEVAELRGRLESSKhiddvDTSLSLLQEISSLQEKMAAAGKEHQREMSSLKEKFESSE---EAL 585
Cdd:COG4942 148 RREQAEELRADLA----ELAALRAELEAER-----AELEALLAELEEERAALEALKAERQKLLARLEKELAELAaelAEL 218
|
250 260
....*....|....*....|....*....
gi 2024359659 586 RKEIKTLSASNERMGKENESLKTKLDHAN 614
Cdd:COG4942 219 QQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
705-1116 |
5.07e-04 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 44.36 E-value: 5.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 705 EEKEQTLENLKAKLESVEDQHLVEMEDTLNKLQEAEIKVSNlTKELQGKEQKLLDLEKNLSAVNQVKDSLEKELQLLKEK 784
Cdd:pfam09731 102 AEEEKEATKDAAEAKAQLPKSEQEKEKALEEVLKEAISKAE-SATAVAKEAKDDAIQAVKAHTDSLKEASDTAEISREKA 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 785 FTSAVDGAENAQRAMQETINKLNQKEEQFAL-MSSELEQLKSNLTVMETKLKEREEREQ-------QLTEAKVKLENDIA 856
Cdd:pfam09731 181 TDSALQKAEALAEKLKEVINLAKQSEEEAAPpLLDAAPETPPKLPEHLDNVEEKVEKAQslaklvdQYKELVASERIVFQ 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 857 EIMKS-----SGDSSAQLMKMNDELrlkERQLEQIQLELTKANEKAVQLQKNVEQTAQKAEQSQQETLKTHQEELkkmqd 931
Cdd:pfam09731 261 QELVSifpdiIPVLKEDNLLSNDDL---NSLIAHAHREIDQLSKKLAELKKREEKHIERALEKQKEELDKLAEEL----- 332
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 932 qltdMKKQMETSQNQYKDLQAKYEKETSEMITKHDADIKG-FKQNLLDAEEALKaaqkknDELETQAEELKKQAEQakad 1010
Cdd:pfam09731 333 ----SARLEEVRAADEAQLRLEFEREREEIRESYEEKLRTeLERQAEAHEEHLK------DVLVEQEIELQREFLQ---- 398
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1011 kraeevlQTMEKVTKEKDAiHQEKIETLASlensrqtneklqneldmlkqnNLKNEEELTKSKELLNLENKKVEELKKEF 1090
Cdd:pfam09731 399 -------DIKEKVEEERAG-RLLKLNELLA---------------------NLKGLEKATSSHSEVEDENRKAQQLWLAV 449
|
410 420
....*....|....*....|....*...
gi 2024359659 1091 EALK--LAAAQKSQQLAALQEENVKLAE 1116
Cdd:pfam09731 450 EALRstLEDGSADSRPRPLVRELKALKE 477
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
800-986 |
5.35e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.37 E-value: 5.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 800 QETINKLNQKEEQFALMSSELEQLKSNLTVMETKLKEREEREQQLTEAKVKLENDIAEIMKSSGDSSAQLM--KMNDELR 877
Cdd:COG1579 13 QELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGnvRNNKEYE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 878 LKERQLEQIQLELTKANEKAVQLQKNVEQtaqkaeqsqqetlktHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEKE 957
Cdd:COG1579 93 ALQKEIESLKRRISDLEDEILELMERIEE---------------LEEELAELEAELAELEAELEEKKAELDEELAELEAE 157
|
170 180
....*....|....*....|....*....
gi 2024359659 958 TSEMITKHDADIKGFKQNLLDAEEALKAA 986
Cdd:COG1579 158 LEELEAEREELAAKIPPELLALYERIRKR 186
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
863-1182 |
5.38e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.56 E-value: 5.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 863 GDSSAQLMKMNDELRLKERQLEQIQLELTKANEKAVQLQKNVEQTAQKAEQSQQETLKTHQEELKKMQDQLtDMKKQMET 942
Cdd:PRK04863 833 ADPEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADETLADRVEEIREQL-DEAEEAKR 911
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 943 SQNQYKDLQAKYEKETSemitkhdadikgfkqnlldaeeALKAAQKKNDELETQAEELKKQAEQAKADKRA-EEVLQTME 1021
Cdd:PRK04863 912 FVQQHGNALAQLEPIVS----------------------VLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFAlTEVVQRRA 969
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1022 kvtkekdaiHQEKIETLASLENSRQTNEKLQNELDMLKQNNLKNEEELTKSKELLNLENKKVEELKKEFEAlklaaaqKS 1101
Cdd:PRK04863 970 ---------HFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDA-------KR 1033
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1102 QQLAALQEEnvklAEELGRSRDEvTSHQKLEEERSVLNNQLLEMKKRESTLKKEI---DEERASLQKSISDTSALITQKD 1178
Cdd:PRK04863 1034 QMLQELKQE----LQDLGVPADS-GAEERARARRDELHARLSANRSRRNQLEKQLtfcEAEMDNLTKKLRKLERDYHEMR 1108
|
....
gi 2024359659 1179 EELE 1182
Cdd:PRK04863 1109 EQVV 1112
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1032-1158 |
5.42e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 44.43 E-value: 5.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1032 QEKIETL-ASLENSRQTNEKLQNELDMLKQNNLKNEEELtkskellnleNKKVEELKKEFEALKLAAAQKSQQ-LAALQE 1109
Cdd:PRK00409 515 KEKLNELiASLEELERELEQKAEEAEALLKEAEKLKEEL----------EEKKEKLQEEEDKLLEEAEKEAQQaIKEAKK 584
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 2024359659 1110 ENVKLAEELGRSRDEVTSHQK---LEEERSVLNNQLLEMKKRESTLKKEIDE 1158
Cdd:PRK00409 585 EADEIIKELRQLQKGGYASVKaheLIEARKRLNKANEKKEKKKKKQKEKQEE 636
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
874-1049 |
5.79e-04 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 44.03 E-value: 5.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 874 DELRLKERQLEQIQLELTKANEKAVQLQKNVEQTAQKAEQSQQETlkthQEELKKmqdQLTDMKKQMETSQNQYKDLQAK 953
Cdd:PRK09510 90 EELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQA----EEAAAK---AAAAAKAKAEAEAKRAAAAAKK 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 954 YEKETSEmitKHDADIKGFKQNLLDAEEALKAAQKKNDELETQAEELKKQAEQAKADKRAE-EVLQTMEKVTKEKDAIHQ 1032
Cdd:PRK09510 163 AAAEAKK---KAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAaEAKAAAAKAAAEAKAAAE 239
|
170
....*....|....*..
gi 2024359659 1033 EKIETLASLENSRQTNE 1049
Cdd:PRK09510 240 KAAAAKAAEKAAAAKAA 256
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
394-1045 |
6.14e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 6.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 394 ALVRDghdrHVLE----------MEAKMDQLRAMVEAAD--REKVELLNQLEEEKRKVEDLQFRVE--EESITKGDLERK 459
Cdd:COG4913 211 DFVRE----YMLEepdtfeaadaLVEHFDDLERAHEALEdaREQIELLEPIRELAERYAAARERLAelEYLRAALRLWFA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 460 RQISEDPENTQTKLEhARIKELEQSLLFEKTKADKLQRELEDTRVATVSEK-SRIMELERDLALRVKEVAELRGRLESSK 538
Cdd:COG4913 287 QRRLELLEAELEELR-AELARLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERERRRARLE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 539 HiddvdtslsLLQEISSLQEKMAAAGKEHQREMSSLKEKFESSEEALRKEIKTLSASNERMGKENESLKTKLDH--ANKE 616
Cdd:COG4913 366 A---------LLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASleRRKS 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 617 N--SDVIELwKSKLESAIASHQQAM----EELKVSfnkgvgaqtAEFAELKTQMEK----------VKLDYENEMS---- 676
Cdd:COG4913 437 NipARLLAL-RDALAEALGLDEAELpfvgELIEVR---------PEEERWRGAIERvlggfaltllVPPEHYAAALrwvn 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 677 NLKLKQE------NEKSQHLKEIEALKAKLLEVTEEKEQTLEN-LKAKLESVEDQHLVEMEDTLNKLQEAeIKVSNLTKE 749
Cdd:COG4913 507 RLHLRGRlvyervRTGLPDPERPRLDPDSLAGKLDFKPHPFRAwLEAELGRRFDYVCVDSPEELRRHPRA-ITRAGQVKG 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 750 LQGKEQKllDLEKNL--------SAVNQVKDsLEKELQLLKEkftsAVDGAENAQRAMQETINKLNQKEEQFAlmssELE 821
Cdd:COG4913 586 NGTRHEK--DDRRRIrsryvlgfDNRAKLAA-LEAELAELEE----ELAEAEERLEALEAELDALQERREALQ----RLA 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 822 QLKSNLTVMETKLKEREEREQQLteakvklendiaeimkssgdssAQLMKMNDELRLKERQLEQIQLELTKANEKAVQLQ 901
Cdd:COG4913 655 EYSWDEIDVASAEREIAELEAEL----------------------ERLDASSDDLAALEEQLEELEAELEELEEELDELK 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 902 KNVEQTAQKAEQ--SQQETLKTHQEELKKMQDQLT------------------DMKKQMETSQNQYKDLQAKYEKETSEM 961
Cdd:COG4913 713 GEIGRLEKELEQaeEELDELQDRLEAAEDLARLELralleerfaaalgdaverELRENLEERIDALRARLNRAEEELERA 792
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 962 ITKHDADIKGFKQNLLDAEEALKAAQKKNDELETQA-EELKKQAEQAKADKRAEEVLQTMEKVTKEKDAIhQEKIETL-A 1039
Cdd:COG4913 793 MRAFNREWPAETADLDADLESLPEYLALLDRLEEDGlPEYEERFKELLNENSIEFVADLLSKLRRAIREI-KERIDPLnD 871
|
....*.
gi 2024359659 1040 SLENSR 1045
Cdd:COG4913 872 SLKRIP 877
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
463-699 |
6.16e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 6.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 463 SEDPENTQTKLE--HARIKELEQSLLFEKTKADKLQRELEDTRVATVSEKSRIMELERDLALRVKEVAELRGRlesskhI 540
Cdd:COG4942 19 ADAAAEAEAELEqlQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE------I 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 541 DDVDTSLSLLQEisSLQEKMAAAGKEHQREMSSLKEKFESSEEALRKeIKTLSASNERMGKENESLKTKLDHANKENSDv 620
Cdd:COG4942 93 AELRAELEAQKE--ELAELLRALYRLGRQPPLALLLSPEDFLDAVRR-LQYLKYLAPARREQAEELRADLAELAALRAE- 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2024359659 621 IELWKSKLESAIASHQQAMEELKvsfnkgvgAQTAEFAELKTQMEKVKLDYENEMSNLKlKQENEKSQHLKEIEALKAK 699
Cdd:COG4942 169 LEAERAELEALLAELEEERAALE--------ALKAERQKLLARLEKELAELAAELAELQ-QEAEELEALIARLEAEAAA 238
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
355-709 |
8.12e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.96 E-value: 8.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 355 QEALK-EKQQHIEQLLAERDLERAEVAKAtshvGEIEQELALVRDgHDRHVLEMEAKMDQLRamveaadrekvellnqLE 433
Cdd:pfam17380 298 QERLRqEKEEKAREVERRRKLEEAEKARQ----AEMDRQAAIYAE-QERMAMERERELERIR----------------QE 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 434 EEKRKVEdlqfRVEEESITkgdlerkrqisedpentqtkLEHARIKELEQSLLFEKTKADKLQRELEDTRVATVSEKSRi 513
Cdd:pfam17380 357 ERKRELE----RIRQEEIA--------------------MEISRMRELERLQMERQQKNERVRQELEAARKVKILEEER- 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 514 melERDLALRVKEVAELRGRLESSKhiddvdtslsllqeisslqekmaaagkehQREMSSLKEKFESSEEALRKEIKTLS 593
Cdd:pfam17380 412 ---QRKIQQQKVEMEQIRAEQEEAR-----------------------------QREVRRLEEERAREMERVRLEEQERQ 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 594 ASNERMGKENESLKTK---LDHANKENSDVIELWKSKLESAIASHQQAMEElkvsfnkgvgaQTAEFAELKTQMEKVKLD 670
Cdd:pfam17380 460 QQVERLRQQEEERKRKkleLEKEKRDRKRAEEQRRKILEKELEERKQAMIE-----------EERKRKLLEKEMEERQKA 528
|
330 340 350
....*....|....*....|....*....|....*....
gi 2024359659 671 YENEMSNLKLKQENEKSQHLKEIEALKAKLLEVTEEKEQ 709
Cdd:pfam17380 529 IYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSR 567
|
|
| ClyA_NheA-like |
cd22654 |
Bacillus cereus non-hemolytic enterotoxin (Nhe) component A (NheA), and similar proteins; This ... |
749-965 |
8.53e-04 |
|
Bacillus cereus non-hemolytic enterotoxin (Nhe) component A (NheA), and similar proteins; This model contains Bacillus cereus tripartite non-hemolytic enterotoxin (Nhe) component A (NheA), a member of the cytolysin A (ClyA) family of alpha pore-forming toxins (alpha-PFTs). Non-hemolytic enterotoxin (Nhe), despite its name, is hemolytic and able to lyse erythrocytes from various mammalian organisms. It consists of three proteins, NheA, NheB and NheC, encoded by one operon containing three genes nheA, nheB and nheC, respectively. Separately, these three proteins show no toxicity; maximal activity is seen only when all three components are presented. The NheB and NheC components are able to bind to cell membranes while NheA is not; NheC primes the host cell for the formation of ion permeable NheB/C pores. Binding of NheA to NheB/NheC is thought to be the final stage of pore formation. Structure of NheA shows an elongated, almost entirely alpha-helical protein with an enlarged "head" domain compared with other cytolysins, displaying on its surface an enlarged beta-tongue which is of amphipathic rather than hydrophobic nature. It has been proposed that NheA could even form beta-barrel pores.
Pssm-ID: 439152 [Multi-domain] Cd Length: 333 Bit Score: 43.02 E-value: 8.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 749 ELQGK-EQKLLDLEKNLSAVNQVKDSLEKELQLLKEKFTSAVD--GAENAQRA-MQETINKLNQ--KEEQFALMSSELEQ 822
Cdd:cd22654 101 KLQSQlQTIQNSMEQTSSNLNRFKTLLDADSKNFSTDAKKAIDslSGSNGEIAqLRTQIKTINDeiQEELTKILNRPIEV 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 823 LKSNLTVMETKLKEREEREQQLTEAKVKLENDIAEIMKSSGDssaQLMKMNDELRLKERQLEQIQLELTKANEKAVQLQK 902
Cdd:cd22654 181 GDGSINIGKQVFTITITTATTKTVDVTSIGGLINGIGNASDD---EVKEAANKIQQKQKELVDLIKKLSDAEIQATQLTL 257
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024359659 903 NVEQTAQKAE--QSQQETLKTHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYE--KETSEMITKH 965
Cdd:cd22654 258 VEDQVNGFTEliKRQIATLENLVEDWEMLNQNMNQLQTNVNSGKIDSKLLQKQLKqiKKISDELNKQ 324
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
534-1071 |
1.00e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 1.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 534 LESSKHIDDVDTSLSLLQEISSLQEKMAAAgkEHQREM-SSLKEKFESSEEALRKEiktlsasnermgKENESLKTKLDH 612
Cdd:COG4913 218 LEEPDTFEAADALVEHFDDLERAHEALEDA--REQIELlEPIRELAERYAAARERL------------AELEYLRAALRL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 613 ANKEnsDVIELWKSK---LESAIASHQQAMEELKvsfnKGVGAQTAEFAELKTQMEKVKLD----YENEMSNLKlKQENE 685
Cdd:COG4913 284 WFAQ--RRLELLEAEleeLRAELARLEAELERLE----ARLDALREELDELEAQIRGNGGDrleqLEREIERLE-RELEE 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 686 KSQHLKEIEALKAKLLEVTEEKEQTLENLKAKLESVEDQHLVEMEDTLNKLQEAEIKVSNLTKELQGKEQKLLDLEKNLS 765
Cdd:COG4913 357 RERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKS 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 766 ----AVNQVKDSLEKELQLLKE--KFtsavdGAE-----NAQRAMQETINKL--NQK------EEQFALMSSELEQLKSN 826
Cdd:COG4913 437 nipaRLLALRDALAEALGLDEAelPF-----VGElievrPEEERWRGAIERVlgGFAltllvpPEHYAAALRWVNRLHLR 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 827 LTVMETKLKEREEREQQLTEakvkLENDIAEIMKSSG--------------------DSSAQL------------MKMND 874
Cdd:COG4913 512 GRLVYERVRTGLPDPERPRL----DPDSLAGKLDFKPhpfrawleaelgrrfdyvcvDSPEELrrhpraitragqVKGNG 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 875 ELRLK----------------ERQLEQIQLELTKANEKAVQLQKNVEQtaQKAEQSQQETLKTHQEELKKMQDQLTDmkk 938
Cdd:COG4913 588 TRHEKddrrrirsryvlgfdnRAKLAALEAELAELEEELAEAEERLEA--LEAELDALQERREALQRLAEYSWDEID--- 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 939 qMETSQNQYKDLQAKYEKetsemITKHDADIKGFKQNLLDAEEALKAAQKKNDELETQAEELKKQAEQAKAD-KRAEEVL 1017
Cdd:COG4913 663 -VASAEREIAELEAELER-----LDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEElDELQDRL 736
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 2024359659 1018 QTMEKVTKEKDAIH-QEKIETLASLENSRQTNEKLQNELDMLKQNNLKNEEELTK 1071
Cdd:COG4913 737 EAAEDLARLELRALlEERFAAALGDAVERELRENLEERIDALRARLNRAEEELER 791
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
414-777 |
1.04e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 43.35 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 414 LRAMVEAADREKVELLNQLEEEKRKVEDLQFRVEEEsitKGDLERKRqisedpenTQTKLEHARIKELEQSLLFEKTKAD 493
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEAANRQREKEKERYKRD---REQWERQR--------RELESRVAELKEELRQSREKHEELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 494 KLQRELEDTRVATVSEKSRIMELERDLALRVKEVAELRGRLESSKHIDDVDtslslLQEISSLQEKMAAAGKEHQREMSS 573
Cdd:pfam07888 101 EKYKELSASSEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETE-----LERMKERAKKAGAQRKEEEAERKQ 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 574 LKEKFESSEEALRKEIKTL----------SASNERMGKENESLKTKLDHANK---ENSDVIELWKSKLESAIAShQQAME 640
Cdd:pfam07888 176 LQAKLQQTEEELRSLSKEFqelrnslaqrDTQVLQLQDTITTLTQKLTTAHRkeaENEALLEELRSLQERLNAS-ERKVE 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 641 ELKVSFNKGVGAQTAEFAEL-KTQMEKVKLDYENEMSNLKLKQE-----NEKSQHLKEIEALKAKLLEVTEE-------- 706
Cdd:pfam07888 255 GLGEELSSMAAQRDRTQAELhQARLQAAQLTLQLADASLALREGrarwaQERETLQQSAEADKDRIEKLSAElqrleerl 334
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024359659 707 KEQTLENLKAKLE--SVEDQHLVEMEDTLNKLQEAEIKVSNLTKElqgKEQKLLDLEKNLSAVNQVKDSLEKE 777
Cdd:pfam07888 335 QEERMEREKLEVElgREKDCNRVQLSESRRELQELKASLRVAQKE---KEQLQAEKQELLEYIRQLEQRLETV 404
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
960-1087 |
1.12e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 43.28 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 960 EMITKHDADIKGFKQNLLDAEEALKAAQKKNDELETQAEELKKQAEQAKADKRaEEVLQTMEKVTKEKDAIhqekIETLA 1039
Cdd:PRK00409 520 ELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAE-KEAQQAIKEAKKEADEI----IKELR 594
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2024359659 1040 SLENSRQTNEKLQNELDMLKQNNLKNEEELTKSKEllnlENKKVEELK 1087
Cdd:PRK00409 595 QLQKGGYASVKAHELIEARKRLNKANEKKEKKKKK----QKEKQEELK 638
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
656-766 |
1.14e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.23 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 656 EFAELKTQMEKVKLDYENEMSNL--KLKQE----NEKSQHLKEIEALKAKLLEVTEEKEQTLENLKAKLESVEDQHLVEM 729
Cdd:PRK12704 65 EIHKLRNEFEKELRERRNELQKLekRLLQKeenlDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQEL 144
|
90 100 110
....*....|....*....|....*....|....*..
gi 2024359659 730 EdtlnklqeaeiKVSNLTKElQGKEQKLLDLEKNLSA 766
Cdd:PRK12704 145 E-----------RISGLTAE-EAKEILLEKVEEEARH 169
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
576-815 |
1.15e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 43.35 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 576 EKFESSEEALRKEIKTLSAsneRMGKENESLKTkldhANKENSDViELWKSKLESAiashQQAMEELKVSFNKGVGAQTA 655
Cdd:PLN02939 159 EKILTEKEALQGKINILEM---RLSETDARIKL----AAQEKIHV-EILEEQLEKL----RNELLIRGATEGLCVHSLSK 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 656 EFAELKTQmekvkldyenemsNLKLKQEneksqhlkeIEALKAKLLEVTE--------EKEQTLenLKAKLESVEDQHLV 727
Cdd:PLN02939 227 ELDVLKEE-------------NMLLKDD---------IQFLKAELIEVAEteervfklEKERSL--LDASLRELESKFIV 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 728 EMEDTLnKLQEAEI-----KVSNLTKEL-----------------QGKEQKLLDLEKNLSAVNQVKDSLEK------ELQ 779
Cdd:PLN02939 283 AQEDVS-KLSPLQYdcwweKVENLQDLLdratnqvekaalvldqnQDLRDKVDKLEASLKEANVSKFSSYKvellqqKLK 361
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 2024359659 780 LLKEKFT-------SAVDGAENAQRAMQETINKLNQKEEQFAL 815
Cdd:PLN02939 362 LLEERLQasdheihSYIQLYQESIKEFQDTLSKLKEESKKRSL 404
|
|
| tolA_full |
TIGR02794 |
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
878-1041 |
1.20e-03 |
|
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]
Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 42.91 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 878 LKERQLEQIQLELTKANEKAVQLQKNVEQTA------QKAEQSQQETLKTHQEELKKMQdQLTDMKKQMETSQNQYKDLQ 951
Cdd:TIGR02794 47 AVAQQANRIQQQKKPAAKKEQERQKKLEQQAeeaekqRAAEQARQKELEQRAAAEKAAK-QAEQAAKQAEEKQKQAEEAK 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 952 AKYEKET---SEMITKHDADIKGFKQNLLDAE-EALKAAQKKNDELETQAEELKKQAEQAKADKRAEEVLQTMEKVTKEK 1027
Cdd:TIGR02794 126 AKQAAEAkakAEAEAERKAKEEAAKQAEEEAKaKAAAEAKKKAEEAKKKAEAEAKAKAEAEAKAKAEEAKAKAEAAKAKA 205
|
170
....*....|....
gi 2024359659 1028 DAIHQEKIETLASL 1041
Cdd:TIGR02794 206 AAEAAAKAEAEAAA 219
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
864-1231 |
1.32e-03 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 43.14 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 864 DSSAQLMKMNDELRLKERQLEQIQLELTKANEKAVQLQKNVEQTaqKAEQSQQET----LKTHQEELKK----MQDQLTD 935
Cdd:pfam05622 28 EEKNSLQQENKKLQERLDQLESGDDSGTPGGKKYLLLQKQLEQL--QEENFRLETarddYRIKCEELEKevleLQHRNEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 936 MKKQMETSQnQYKDlQAKYEKETSEMITKHDADIKGFK------------------------QNLLDAEEALKAAQKKND 991
Cdd:pfam05622 106 LTSLAEEAQ-ALKD-EMDILRESSDKVKKLEATVETYKkkledlgdlrrqvklleernaeymQRTLQLEEELKKANALRG 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 992 ELET---QAEEL--KKQAEQAKADKRAEEVLQTMEKVtkekDAIHQEKIETLASLENSRQTNEKL------QNELDMLKQ 1060
Cdd:pfam05622 184 QLETykrQVQELhgKLSEESKKADKLEFEYKKLEEKL----EALQKEKERLIIERDTLRETNEELrcaqlqQAELSQADA 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1061 NNLKNEEEL-TKSKELLNLENK-KVEELKKEFEALKLAA-AQKSQQLAALQEenvkLAEELGRSRDEvtshqkLEEERSV 1137
Cdd:pfam05622 260 LLSPSSDPGdNLAAEIMPAEIReKLIRLQHENKMLRLGQeGSYRERLTELQQ----LLEDANRRKNE------LETQNRL 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1138 LNNQLLEMKKRESTLKKEIDEeraslQKSISDTSALITQKDEELEKLRNEItvlrGENASAKTLQsvVKTLESDKL-KLE 1216
Cdd:pfam05622 330 ANQRILELQQQVEELQKALQE-----QGSKAEDSSLLKQKLEEHLEKLHEA----QSELQKKKEQ--IEELEPKQDsNLA 398
|
410
....*....|....*
gi 2024359659 1217 EKVKNLEQKLKAKSE 1231
Cdd:pfam05622 399 QKIDELQEALRKKDE 413
|
|
| Surf_Exclu_PgrA |
TIGR04320 |
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface ... |
891-1005 |
1.40e-03 |
|
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.
Pssm-ID: 275124 [Multi-domain] Cd Length: 356 Bit Score: 42.79 E-value: 1.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 891 TKANEKAVQLQKNVEQTAQKAEQSQQETLKTHQEELKKMQDQLTDMKKQMETSQNQ-YKDLQAKYEKEtsemitkhdadi 969
Cdd:TIGR04320 256 LAALQAKLATAQADLAAAQTALNTAQAALTSAQTAYAAAQAALATAQKELANAQAQaLQTAQNNLATA------------ 323
|
90 100 110
....*....|....*....|....*....|....*.
gi 2024359659 970 kgfKQNLLDAEEALKAAQKKNDELETQAEELKKQAE 1005
Cdd:TIGR04320 324 ---QAALANAEARLAKAKEALANLNADLAKKQAALD 356
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
728-1022 |
1.54e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 42.21 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 728 EMEDTLNKLQEaeiKVSNLTKELQGKEQKLLDLEKNLSAVNQVKDSLEKELQLLKEKFTSAVDGAENAQRAMQETINKLN 807
Cdd:COG1340 5 ELSSSLEELEE---KIEELREEIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREKRDELNEKVKELKEERD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 808 QKEEQFALMSSELEQLKSNLTVMETKLK---------EREEREQQLTEAKVKLENDIAEIMKssgdssaQLMKMNDELRL 878
Cdd:COG1340 82 ELNEKLNELREELDELRKELAELNKAGGsidklrkeiERLEWRQQTEVLSPEEEKELVEKIK-------ELEKELEKAKK 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 879 KERQLEQIQLELTKANEKAVQLQKNVEQTAQKAEQSQQetlktHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEKET 958
Cdd:COG1340 155 ALEKNEKLKELRAELKELRKEAEEIHKKIKELAEEAQE-----LHEEMIELYKEADELRKEADELHKEIVEAQEKADELH 229
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024359659 959 SEMItkhdadikgfkqnllDAEEALKAAQKKNDELETQAEELKKQAEQAKADKRAEEVLQTMEK 1022
Cdd:COG1340 230 EEII---------------ELQKELRELRKELKKLRKKQRALKREKEKEELEEKAEEIFEKLKK 278
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
352-919 |
1.56e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.03 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 352 TALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALVRDGH-DRHVLEMEAKMDQLRAMVE----------- 419
Cdd:TIGR00618 375 HTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQgQLAHAKKQQELQQRYAELCaaaitctaqce 454
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 420 -AADREKVELLNQLEEEKRKVEDLQ-FRVEEESITKGDLERKRQISEDPENTQTKLEHARIkELEQSLLFEKT------- 490
Cdd:TIGR00618 455 kLEKIHLQESAQSLKEREQQLQTKEqIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNP-ARQDIDNPGPLtrrmqrg 533
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 491 --KADKLQRELEDTRVATVSEKSRIMELERDLALRVKEVAELRGRLESSKhiDDVDTSLSLLQEISSLQEKMAAAGKEHQ 568
Cdd:TIGR00618 534 eqTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSK--EDIPNLQNITVRLQDLTEKLSEAEDMLA 611
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 569 REMSSLKEKFESSEEALRKeiktlsASNERMGKENESLKTKLDHANKENsdvieLWKSKLESAIASHQQAMEELkvsfnk 648
Cdd:TIGR00618 612 CEQHALLRKLQPEQDLQDV------RLHLQQCSQELALKLTALHALQLT-----LTQERVREHALSIRVLPKEL------ 674
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 649 gvgAQTAEFAELKTQMEKVKLDYENEMSNLKLKQENEKSQHLKEIEALKAKLLEVTEEKEQTLENLKAKLESVEDQHLVE 728
Cdd:TIGR00618 675 ---LASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQ 751
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 729 MEDTLNKLQEAEIKVSNLTKELQGKEQKLLDLEKNLSAVNQVKDSLEKELQLLKEKFTSAVDGAENAQRAMQETINklnQ 808
Cdd:TIGR00618 752 ARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLV---Q 828
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 809 KEEQFalmSSELEQLKSNLTVMETKLKEREEREQQLTEAKVKLENDIAEIMKSSGDSSAQLMKMNDELRLKERQLEQIQL 888
Cdd:TIGR00618 829 EEEQF---LSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGINQIKIQFDGDALIKFLHEITLYAN 905
|
570 580 590
....*....|....*....|....*....|.
gi 2024359659 889 ELTkANEKAVQLQKNVEQTAQKAEQSQQETL 919
Cdd:TIGR00618 906 VRL-ANQSEGRFHGRYADSHVNARKYQGLAL 935
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1044-1203 |
1.61e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.92 E-value: 1.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1044 SRQTNEKLQNELDMLKQNNLKNEEELTKSKELLNLENKKVEELKKEFEALKlaaaqksQQLAALQEENVKLAEELGRSRD 1123
Cdd:COG2433 383 EELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELE-------AELEEKDERIERLERELSEARS 455
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1124 EVtsHQKLEEERSVLNnqlleMKKRESTLKKEIDEERASLQKSISdtsalitqKDEELEKLRNEitVLRGENASAKTLQS 1203
Cdd:COG2433 456 EE--RREIRKDREISR-----LDREIERLERELEEERERIEELKR--------KLERLKELWKL--EHSGELVPVKVVEK 518
|
|
| PspA |
COG1842 |
Phage shock protein A [Transcription, Signal transduction mechanisms]; |
823-1020 |
1.67e-03 |
|
Phage shock protein A [Transcription, Signal transduction mechanisms];
Pssm-ID: 441447 [Multi-domain] Cd Length: 217 Bit Score: 41.35 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 823 LKSNLTVMETKLkerEEREQQLTEAKVKLENDIAEIMKSSGDSSAQLMKMndelrlkERQLEQIQLELTKANEKAVQ-LQ 901
Cdd:COG1842 10 IRANINALLDKA---EDPEKMLDQAIRDMEEDLVEARQALAQVIANQKRL-------ERQLEELEAEAEKWEEKARLaLE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 902 KNVEQTAQKA---EQSQQETLKTHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEK--------ETSEMITKHDADIk 970
Cdd:COG1842 80 KGREDLAREAlerKAELEAQAEALEAQLAQLEEQVEKLKEALRQLESKLEELKAKKDTlkarakaaKAQEKVNEALSGI- 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2024359659 971 gfkqNLLDAEEALKAAQKKNDELETQAE---------ELKKQAEQAKADKRAEEVLQTM 1020
Cdd:COG1842 159 ----DSDDATSALERMEEKIEEMEARAEaaaelaagdSLDDELAELEADSEVEDELAAL 213
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
390-1284 |
2.04e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 42.73 E-value: 2.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 390 EQELALVRDGHDRHVLEMEA--------KMDQLRAMVEAADREK-------VEL-LNQLEEEKRKVEDLQFRV-----EE 448
Cdd:TIGR01612 1547 EIIIKEIKDAHKKFILEAEKseqkikeiKKEKFRIEDDAAKNDKsnkaaidIQLsLENFENKFLKISDIKKKIndclkET 1626
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 449 ESITK-------GDLERKRQISEDPENT-QTKLEhaRIKELEQSLLFEKTKADKLQRELEDTRVATVSEKSrimELERDL 520
Cdd:TIGR01612 1627 ESIEKkissfsiDSQDTELKENGDNLNSlQEFLE--SLKDQKKNIEDKKKELDELDSEIEKIEIDVDQHKK---NYEIGI 1701
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 521 ALRVKEVAEL-RGRLESSKH-----IDDVDTSLSL--LQEISSlQEKMaaagKEHQREMSSLKEKFESSEEALRKEIKTL 592
Cdd:TIGR01612 1702 IEKIKEIAIAnKEEIESIKElieptIENLISSFNTndLEGIDP-NEKL----EEYNTEIGDIYEEFIELYNIIAGCLETV 1776
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 593 SAS--------NERMGKENESLKTkLDHANKENSDVIELWKSKLESAIASHQQAMEELKVSFNKGVGAQTAEFAELKTQM 664
Cdd:TIGR01612 1777 SKEpitydeikNTRINAQNEFLKI-IEIEKKSKSYLDDIEAKEFDRIINHFKKKLDHVNDKFTKEYSKINEGFDDISKSI 1855
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 665 EKVKLDY-ENEMSNLkLKQENE-------KSQHLKEIEALK-----AKLLEVTEEKEQT------LENLKAKLESVEDQh 725
Cdd:TIGR01612 1856 ENVKNSTdENLLFDI-LNKTKDayagiigKKYYSYKDEAEKifiniSKLANSINIQIQNnsgidlFDNINIAILSSLDS- 1933
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 726 lvEMEDTLNKLQEAEIKVSNLTK----------------ELQGKEQKLLD-------LEKNLSAVNQVKDSL-------E 775
Cdd:TIGR01612 1934 --EKEDTLKFIPSPEKEPEIYTKirdsydtlldifkksqDLHKKEQDTLNiifenqqLYEKIQASNELKDTLsdlkykkE 2011
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 776 K---ELQLLKEKFTSAVDGAENAQRamQETINKLNqKEEQFALMSSELEQLKSNLtVMETKLKEREEREQQLTEAKVKLE 852
Cdd:TIGR01612 2012 KilnDVKLLLHKFDELNKLSCDSQN--YDTILELS-KQDKIKEKIDNYEKEKEKF-GIDFDVKAMEEKFDNDIKDIEKFE 2087
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 853 NDIAEIMKSSGDSSAQL-------MKMNDELRLKERQLEQIQLELTKANEKAVQLQKNVEQTAQKAEQSQQETLKT---- 921
Cdd:TIGR01612 2088 NNYKHSEKDNHDFSEEKdniiqskKKLKELTEAFNTEIKIIEDKIIEKNDLIDKLIEMRKECLLFSYATLVETLKSkvin 2167
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 922 HQEELKKMQDQLTDMKKQMETSQNQYKD----LQAKYE-KETSEMITKHDADIKGFKQNLLDAEealKAAQKKNDELetq 996
Cdd:TIGR01612 2168 HSEFITSAAKFSKDFFEFIEDISDSLNDdidaLQIKYNlNQTKKHMISILADATKDHNNLIEKE---KEATKIINNL--- 2241
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 997 AEELKKQAEQAKADKRAEEVLQTM---EKVTKEKDAIHQ--EKIETLaSLENSRQTNEK---LQNELDMLKQ-------- 1060
Cdd:TIGR01612 2242 TELFTIDFNNADADILHNNKIQIIyfnSELHKSIESIKKlyKKINAF-KLLNISHINEKyfdISKEFDNIIQlqkhklte 2320
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1061 --NNLKNEEELTKSKELLNLE------NKKVEELKKEFEALklaaAQKSQQLAALQEENVKLAEELGRSRDEVTshqKLE 1132
Cdd:TIGR01612 2321 nlNDLKEIDQYISDKKNIFLHalnentNFNFNALKEIYDDI----INRENKADEIENINNKENENIMQYIDTIT---KLT 2393
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1133 EERSVLNNQLLEMKKRESTLKKEIDEERASLQKSISDTSALITQKDEELEKLRNEITV-LRGENASAKTLQSV------V 1205
Cdd:TIGR01612 2394 EKIQDILIFVTTYENDNNIIKQHIQDNDENDVSKIKDNLKKTIQSFQEILNKIDEIKAqFYGGNNINNIIITIsqnandV 2473
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1206 KTLESDKLKLEEKVKNLEQKLK--------AKSEQPLTVTSPSGDI---AANLLQDESAEDKQQEIDFLNSVIVDLQRRN 1274
Cdd:TIGR01612 2474 KNHFSKDLTIENELIQIQKRLEdiknaaheIRSEQITKYTNAIHNHieeQFKKIENNSNKDEVYKINEIDNIIEKIINYN 2553
|
1050
....*....|
gi 2024359659 1275 EELNLKIQRM 1284
Cdd:TIGR01612 2554 KEPEVKLHAI 2563
|
|
| PRK15374 |
PRK15374 |
type III secretion system needle tip complex protein SipB; |
926-1120 |
2.11e-03 |
|
type III secretion system needle tip complex protein SipB;
Pssm-ID: 185272 [Multi-domain] Cd Length: 593 Bit Score: 42.26 E-value: 2.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 926 LKKMQDQLTDMKKQMETSQNQYKDLQAKYE---KETSEMITKHDADIKGF---KQNLLDAEEALKAAQKKNDELETQAEE 999
Cdd:PRK15374 101 LSQLESRLAVWQAMIESQKEMGIQVSKEFQtalGEAQEATDLYEASIKKTdtaKSVYDAAEKKLTQAQNKLQSLDPADPG 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1000 LKKqaEQAKADKRAEEVLQTMEKVTKEKDAIHQEKIETLASLEN--------SRQTNEKLQNELDMLKQNNLKNEEELTK 1071
Cdd:PRK15374 181 YAQ--AEAAVEQAGKEATEAKEALDKATDATVKAGTDAKAKAEKadniltkfQGTANAASQNQVSQGEQDNLSNVARLTM 258
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2024359659 1072 -SKELLNLENKKVEELKKE----FEALKLAAAQKSQQLAALQEENVKLAEELGR 1120
Cdd:PRK15374 259 lMAMFIEIVGKNTEESLQNdlalFNALQEGRQAEMEKKSAEFQEETRKAEETNR 312
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
548-788 |
2.50e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 2.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 548 SLLQEISSLQEKMAAAGKEHQREMSSLKEkFESSEEALRKEIKTLSASNERMGKENESLKTKLDHANKEnsdvIELWKSK 627
Cdd:COG4942 31 QLQQEIAELEKELAALKKEEKALLKQLAA-LERRIAALARRIRALEQELAALEAELAELEKEIAELRAE----LEAQKEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 628 LESAIASHQQA--MEELKVSFNKGVGAQTAefaelktqmekVKLDYENEMSNLKLKQENEKSQHLKEIEALKAKLLEVTE 705
Cdd:COG4942 106 LAELLRALYRLgrQPPLALLLSPEDFLDAV-----------RRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 706 EKEQTLENLKAKLESVEDQhlvemedtlnkLQEAEIKVSNLTKELQGKEQKLLDLEKNLSAVNQVKDSLEKELQLLKEKF 785
Cdd:COG4942 175 ELEALLAELEEERAALEAL-----------KAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
...
gi 2024359659 786 TSA 788
Cdd:COG4942 244 PAA 246
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
476-743 |
2.91e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.84 E-value: 2.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 476 ARIKELEqsLLFEKTKADKLQRELEDTRVATVSEKSrimelERDLALRVKEVAELRGRLesSKHIDDVDTSLSLLQEISS 555
Cdd:PRK05771 4 VRMKKVL--IVTLKSYKDEVLEALHELGVVHIEDLK-----EELSNERLRKLRSLLTKL--SEALDKLRSYLPKLNPLRE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 556 LQEKMaaagkehqrEMSSLKEKFESSEEALRKEIKTLSASNERMgKENESLKTKLDHANKE-------NSDVIELWKSKL 628
Cdd:PRK05771 75 EKKKV---------SVKSLEELIKDVEEELEKIEKEIKELEEEI-SELENEIKELEQEIERlepwgnfDLDLSLLLGFKY 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 629 ESAIAS--HQQAMEELKVSFNKGVgAQTAEFAE---------LKTQMEKV-KLDYENEMSNLKLKQENEKSQhlkEIEAL 696
Cdd:PRK05771 145 VSVFVGtvPEDKLEELKLESDVEN-VEYISTDKgyvyvvvvvLKELSDEVeEELKKLGFERLELEEEGTPSE---LIREI 220
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 2024359659 697 KAKLLEVTEEKEQTLENLKAKLESVEDQHLVEMEDTLNKLQEAEIKV 743
Cdd:PRK05771 221 KEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALS 267
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
583-932 |
2.94e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 41.87 E-value: 2.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 583 EALRKEIKTLSASNERMGKENESLKTKLDHANKENSDVIELWKSKLESAIASHQQAMEELKVSFNKGVGAQTAE----FA 658
Cdd:COG5185 242 ESELEDLAQTSDKLEKLVEQNTDLRLEKLGENAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKATESLEeqlaAA 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 659 ELKTQMEKVKLDYENEMSNLKLKQENEKSQHLKEIEALKAKLLEVT-----EEKEQTLENLKAKLESVEDQHLVEMEDTL 733
Cdd:COG5185 322 EAEQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVgevelSKSSEELDSFKDTIESTKESLDEIPQNQR 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 734 NKLQEAEIKVSNLTKELqgkEQKLLDLEKNL-SAVNQVKDSLEKELQLLKEKFTSAVDGAENAQRAMQETINKLNQ-KEE 811
Cdd:COG5185 402 GYAQEILATLEDTLKAA---DRQIEELQRQIeQATSSNEEVSKLLNELISELNKVMREADEESQSRLEEAYDEINRsVRS 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 812 QFALMSSELEQLKSNLTVMETKLKEREEREQQLTEAKVKLENDIAEIMKSSgdssaqlMKMNDELRLKERQLEQIQLELT 891
Cdd:COG5185 479 KKEDLNEELTQIESRVSTLKATLEKLRAKLERQLEGVRSKLDQVAESLKDF-------MRARGYAHILALENLIPASELI 551
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 2024359659 892 KA-NEKAVQLQKNVEQTAQKAEQSQQETLKTHQEELKKMQDQ 932
Cdd:COG5185 552 QAsNAKTDGQAANLRTAVIDELTQYLSTIESQQAREDPIPDQ 593
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
356-533 |
3.11e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 3.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 356 EALKEKQQHIEQLLAERDLERAEVAkatshVGEIEQELALVRDGHDRHvlemEAKMDQLRAMVEAADREKVELLNQLEEE 435
Cdd:COG4913 265 AAARERLAELEYLRAALRLWFAQRR-----LELLEAELEELRAELARL----EAELERLEARLDALREELDELEAQIRGN 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 436 K-RKVEDLQFRVEEESITKGDLERKR--------QISEDPENTQTKLEHARiKELEQSLlfektkaDKLQRELEDTRVAT 506
Cdd:COG4913 336 GgDRLEQLEREIERLERELEERERRRarleallaALGLPLPASAEEFAALR-AEAAALL-------EALEEELEALEEAL 407
|
170 180
....*....|....*....|....*..
gi 2024359659 507 VSEKSRIMELERDLALRVKEVAELRGR 533
Cdd:COG4913 408 AEAEAALRDLRRELRELEAEIASLERR 434
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
991-1257 |
3.19e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.21 E-value: 3.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 991 DELETQAEELKKQAEQAKADKRAEEVLQTMEKVTKEKDAIHQEKIETLASLENSRQTNEKLQNELDMLKQNNLKNEEELT 1070
Cdd:PRK11281 39 ADVQAQLDALNKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETL 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1071 KSKELLNLEnKKVEELKKEFEALKLAAAQKSQQLAALQEenvklAEElgRSRDEVTSHQK-LEEERSVLNNQLLEMKKRE 1149
Cdd:PRK11281 119 STLSLRQLE-SRLAQTLDQLQNAQNDLAEYNSQLVSLQT-----QPE--RAQAALYANSQrLQQIRNLLKGGKVGGKALR 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1150 STLKKEIDEERASL-------QKSISDTSALITQKDEELEKLRNEITVLRGENAsakTLQSVVKtleSDKLKL-EEKVKN 1221
Cdd:PRK11281 191 PSQRVLLQAEQALLnaqndlqRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQ---LLQEAIN---SKRLTLsEKTVQE 264
|
250 260 270
....*....|....*....|....*....|....*.
gi 2024359659 1222 LEQKLKAKSEQpltvTSPsgdiaanLLQDESAEDKQ 1257
Cdd:PRK11281 265 AQSQDEAARIQ----ANP-------LVAQELEINLQ 289
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
805-1232 |
3.42e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 3.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 805 KLNQKEEQFALMSSELEQLKSNLTVMETKLKEREEREQQLTEAkvklendiaeIMKSSGDSSAQLMKmndELRLKERQLE 884
Cdd:COG4913 289 RLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQ----------IRGNGGDRLEQLER---EIERLERELE 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 885 QIQLELTKANEKAVQLQKNVEQTAQ--KAEQSQ-QETLKTHQEELKKMQDQLTDMKKQMETSQNQYKDLQakyeketsem 961
Cdd:COG4913 356 ERERRRARLEALLAALGLPLPASAEefAALRAEaAALLEALEEELEALEEALAEAEAALRDLRRELRELE---------- 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 962 itkhdADIKGFKQN-------LLDAEEAL-KAAQKKNDELETQAEELKKQAEQAK------------------ADKRAEE 1015
Cdd:COG4913 426 -----AEIASLERRksniparLLALRDALaEALGLDEAELPFVGELIEVRPEEERwrgaiervlggfaltllvPPEHYAA 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1016 VLQTMEKvTKEKDAIHQEKIETLASLENSRQTNEK-LQNELDmLKQNNLKN--EEELTKSKELLNLENkkVEELKKEFEA 1092
Cdd:COG4913 501 ALRWVNR-LHLRGRLVYERVRTGLPDPERPRLDPDsLAGKLD-FKPHPFRAwlEAELGRRFDYVCVDS--PEELRRHPRA 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1093 LKLA--------AAQK----------------SQQLAALQEENVKLAEELGRSRDEVtshQKLEEERSVLNNQLLEMKKR 1148
Cdd:COG4913 577 ITRAgqvkgngtRHEKddrrrirsryvlgfdnRAKLAALEAELAELEEELAEAEERL---EALEAELDALQERREALQRL 653
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1149 ESTLKKEIDeeRASLQKSISdtsalitQKDEELEKLRNEITVLRGENASAKTLQSVVKTLESDKLKLEEKVKNLEQKLKA 1228
Cdd:COG4913 654 AEYSWDEID--VASAEREIA-------ELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQ 724
|
....
gi 2024359659 1229 KSEQ 1232
Cdd:COG4913 725 AEEE 728
|
|
| COG5391 |
COG5391 |
Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function ... |
964-1190 |
3.77e-03 |
|
Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only];
Pssm-ID: 227680 [Multi-domain] Cd Length: 524 Bit Score: 41.71 E-value: 3.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 964 KHDADIKGFKQNLLDAEEALKAAQKKNdeLETQAEELKKQAEQA-KADKRAEEVLQTMEKVTKEKDaIHQEKIETLAS-- 1040
Cdd:COG5391 251 SHSTLLSSFIENRKSVPTPLSLDLTST--TQELDMERKELNESTsKAIHNILSIFSLFEKILIQLE-SEEESLTRLLEsl 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1041 LENSRQ----------TNEKLQNELDMLKQNNLKNEEELTKSKE-LLNLENKKVEELKKEFEALKLAAAQKSQQLAALQE 1109
Cdd:COG5391 328 NNLLLLvlnfsgvfakRLEQNQNSILNEGVVQAETLRSSLKELLtQLQDEIKSRESLILTDSNLEKLTDQNLEDVEELSR 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1110 ENVKLAEElgrsrDEVTSHQ---------KLEEERSVLNNQllEMKKRESTLKKEIDEERASLQKSISDTSALITQKDEE 1180
Cdd:COG5391 408 SLRKNSSQ-----RAVVSQQpegltsfskLSYKLRDFVQEK--SRSKSIESLQQDKEKLEEQLAIAEKDAQEINEELKNE 480
|
250
....*....|
gi 2024359659 1181 LEKLRNEITV 1190
Cdd:COG5391 481 LKFFFSVRNS 490
|
|
| ATG16 |
pfam08614 |
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for ... |
804-938 |
3.90e-03 |
|
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for eukaryotic cells. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. ATG16 (also known as Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway.
Pssm-ID: 462536 [Multi-domain] Cd Length: 176 Bit Score: 39.92 E-value: 3.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 804 NKLNQKEEQFALMSSELEQLKSNLTVMETKLKEREERE-----QQLTEAKVKLENDIAEIMKSSGDSSAQLMKMNDELRL 878
Cdd:pfam08614 10 NRLLDRTALLEAENAKLQSEPESVLPSTSSSKLSKASPqsasiQSLEQLLAQLREELAELYRSRGELAQRLVDLNEELQE 89
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2024359659 879 KERQLEQIQLELTKANEKAVQLQKNVEQTA------QKAEQSQQETLKTHQEELKKMQDQLTDMKK 938
Cdd:pfam08614 90 LEKKLREDERRLAALEAERAQLEEKLKDREeelrekRKLNQDLQDELVALQLQLNMAEEKLRKLEK 155
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
728-1045 |
4.06e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.45 E-value: 4.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 728 EMEDTLNKLQEAEI-KVSNLTKELQGKeqKLLDLEKNLSAVNQVKDSLE---KELQLLKEKFTSAVDgaenaqramqETI 803
Cdd:PRK05771 17 YKDEVLEALHELGVvHIEDLKEELSNE--RLRKLRSLLTKLSEALDKLRsylPKLNPLREEKKKVSV----------KSL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 804 NKLNQKEEqfalmsSELEQLksnltvmETKLKEREEREQQLTEAKVKLENDIAEIMK-SSGDSSAQLMKMNDEL-----R 877
Cdd:PRK05771 85 EELIKDVE------EELEKI-------EKEIKELEEEISELENEIKELEQEIERLEPwGNFDLDLSLLLGFKYVsvfvgT 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 878 LKERQLEQIQLELTKANEK---------------AVQLQKNVEQTAQKAEQSQQETL--KTHQEELKKMQDQLTDMKKQM 940
Cdd:PRK05771 152 VPEDKLEELKLESDVENVEyistdkgyvyvvvvvLKELSDEVEEELKKLGFERLELEeeGTPSELIREIKEELEEIEKER 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 941 ETSQNQYKDLQAKYEKEtsemitkhdadikgfkqnLLDAEEALKAaqkkndELEtQAEELKKQAEQAKA--------DKR 1012
Cdd:PRK05771 232 ESLLEELKELAKKYLEE------------------LLALYEYLEI------ELE-RAEALSKFLKTDKTfaiegwvpEDR 286
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 2024359659 1013 AEEVLQTMEKVTKEKDAIH-------QEKIETLasLENSR 1045
Cdd:PRK05771 287 VKKLKELIDKATGGSAYVEfvepdeeEEEVPTK--LKNPK 324
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
660-783 |
4.12e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.38 E-value: 4.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 660 LKTQMEKVKLDYENEMSNLKLKQENEKSQHLKEIEALKAKLLEVTEEKEQtlenLKAKLESVEDQhLVEMEDTLNKLQEA 739
Cdd:COG2433 382 LEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEE----LEAELEEKDER-IERLERELSEARSE 456
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 2024359659 740 EIKVSNLTKELQGKEQKLLDLEKNLSAVNQVKDSLEKELQLLKE 783
Cdd:COG2433 457 ERREIRKDREISRLDREIERLERELEEERERIEELKRKLERLKE 500
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
412-601 |
4.26e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 4.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 412 DQLRAMVEAADREKVELLNQLEEEKRKVEDLQFRVEeesitkgDLERKRQISEDPEntQTKLEHARIKELEQSLL----- 486
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAEAALE-------EFRQKNGLVDLSE--EAKLLLQQLSELESQLAearae 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 487 --FEKTKADKLQRELEDTR--VATVSEKSRIMELERDLALRVKEVAELRGRLeSSKHIDDVdtslSLLQEISSLQEKMAA 562
Cdd:COG3206 235 laEAEARLAALRAQLGSGPdaLPELLQSPVIQQLRAQLAELEAELAELSARY-TPNHPDVI----ALRAQIAALRAQLQQ 309
|
170 180 190
....*....|....*....|....*....|....*....
gi 2024359659 563 AGKEHQREMSSLKEKFESSEEALRKEIKTLSASNERMGK 601
Cdd:COG3206 310 EAQRILASLEAELEALQAREASLQAQLAQLEARLAELPE 348
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1016-1232 |
4.28e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.54 E-value: 4.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1016 VLQTMEKVTKEKDAIHQEKIETLASLENSRQ----TNEKLQNELDML-------KQN----NLKNEEELTKSKELLNLE- 1079
Cdd:PHA02562 164 VLSEMDKLNKDKIRELNQQIQTLDMKIDHIQqqikTYNKNIEEQRKKngeniarKQNkydeLVEEAKTIKAEIEELTDEl 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1080 ---NKKVEELKKEFEALKLAAAQKSQQLAALQEEnVKLAEELGRSRdevTSHQKLEEERSVLN---NQLLEMKKRESTLK 1153
Cdd:PHA02562 244 lnlVMDIEDPSAALNKLNTAAAKIKSKIEQFQKV-IKMYEKGGVCP---TCTQQISEGPDRITkikDKLKELQHSLEKLD 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1154 KEIDEEraslqKSISDTSALITQKDEELE-KLRNEITVLRGENASAKTLQSVVKTLESDKLKLEEKVKNLEQKLKAKSEQ 1232
Cdd:PHA02562 320 TAIDEL-----EEIMDEFNEQSKKLLELKnKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKT 394
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
816-1006 |
4.31e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.29 E-value: 4.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 816 MSSELEQLKsNLTVMETKLKEREEREQQLTEAKVKLENDIAEIMKSSGDSSAQLMKMNDELRLKERQLEQIQLELTKANE 895
Cdd:COG1579 2 MPEDLRALL-DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 896 KAVQLQKNVEQTA-QKAEQSQQETLKTHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEKETSEmitkhdadikgfkq 974
Cdd:COG1579 81 QLGNVRNNKEYEAlQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAE-------------- 146
|
170 180 190
....*....|....*....|....*....|..
gi 2024359659 975 nlldAEEALKAAQKKNDELETQAEELKKQAEQ 1006
Cdd:COG1579 147 ----LDEELAELEAELEELEAEREELAAKIPP 174
|
|
| ClyA_Cry6Aa-like |
cd22656 |
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes ... |
611-827 |
4.85e-03 |
|
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes pesticidal Cry6Aa toxin from Bacillus thuringiensis, one of the many parasporal crystal (Cry) toxins produced during the sporulation phase of growth. Many of these proteins are toxic to numerous insect species and have been effectively used as proteinaceous insecticides to directly kill insect pests; some have been used to control insect growth on transgenic agricultural plants. Cry6Aa exists as a protoxin, which is activated by cleavage using trypsin. Structure studies for Cry6Aa support a mechanism of action by pore formation, similar to cytolysin A (ClyA)-type alpha pore-forming toxins (alpha-PFTs) such as HblB, and bioassay and mutation studies show that Cry6Aa is an active pore-forming toxin. Cry6Aa shows atypical features compared to other members of alpha-PFTs, including internal repeat sequences and small loop regions within major alpha helices.
Pssm-ID: 439154 [Multi-domain] Cd Length: 309 Bit Score: 40.82 E-value: 4.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 611 DHANKENSDVIELWKSKLESAIASHQQAMEELKVSFNKGVGAQTAEFAELKTQMEKVKldyeNEMSNLKLKQENEKSQhL 690
Cdd:cd22656 84 NAGGTIDSYYAEILELIDDLADATDDEELEEAKKTIKALLDDLLKEAKKYQDKAAKVV----DKLTDFENQTEKDQTA-L 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 691 KEIEALKAKLL--EVTEEKEQTLENLKAKLESVEDQHLVEMEDTLNKLQeaeikvsnltKELQGKEQKLLDLEKNLSAVN 768
Cdd:cd22656 159 ETLEKALKDLLtdEGGAIARKEIKDLQKELEKLNEEYAAKLKAKIDELK----------ALIADDEAKLAAALRLIADLT 228
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2024359659 769 QVKDSLekelqllkekftsavdgaENAQRAMQETINKLNQKEEQFALMSSELEQLKSNL 827
Cdd:cd22656 229 AADTDL------------------DNLLALIGPAIPALEKLQGAWQAIATDLDSLKDLL 269
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1057-1282 |
4.88e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 4.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1057 MLKQNNLKNEEELTKSKELLNlenKKVEELKKEFEAL--KLAAAQKSQQLAALQEENVKLAEELGRSRDEVTshqKLEEE 1134
Cdd:COG3206 161 YLEQNLELRREEARKALEFLE---EQLPELRKELEEAeaALEEFRQKNGLVDLSEEAKLLLQQLSELESQLA---EARAE 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1135 RSVLNNQLLEMKKR------------ESTLKKEIDEERASLQKSISDTSALITQKDEELEKLRNEITVLRGEnaSAKTLQ 1202
Cdd:COG3206 235 LAEAEARLAALRAQlgsgpdalpellQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQ--LQQEAQ 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1203 SVVKTLESDKLKLEEKVKNLEQKLKAKSEQpltvtspsgdiAANLLQDES-AEDKQQEIDFLNSVIVDLQRRNEELNLKI 1281
Cdd:COG3206 313 RILASLEAELEALQAREASLQAQLAQLEAR-----------LAELPELEAeLRRLEREVEVARELYESLLQRLEEARLAE 381
|
.
gi 2024359659 1282 Q 1282
Cdd:COG3206 382 A 382
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
870-1209 |
4.94e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.04 E-value: 4.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 870 MKMNDELRLKERQLEQIQLELTKANEKAVQLQKNVEQTAQKAEQSQQETLKThQEELKKMQDQLTDMKKQMETSQNQYKD 949
Cdd:COG4372 27 AALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQL-EEELEELNEQLQAAQAELAQAQEELES 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 950 LQAKYEKETSEmITKHDADIKGFKQNLLDAEEALKAAQKKNDELETQAEELKKQAEQAKADKRAEEVLQTMEKVTKEKDA 1029
Cdd:COG4372 106 LQEEAEELQEE-LEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQA 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1030 IHQEKIETLASLENSRQTNEKLQNELDMLKQNNLKNEEELTKSKELLNLENKKVEELKKEFEALKLAAAQKSQQLAALQE 1109
Cdd:COG4372 185 LDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELE 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1110 ENVKLAEELGRSRDEVTSHQKLEEERSVLNNQLLEMKKRESTLKKEIDEERASLQKSISDTSALITQKDEELEKLRNEIT 1189
Cdd:COG4372 265 LAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQ 344
|
330 340
....*....|....*....|
gi 2024359659 1190 VLRGENASAKTLQSVVKTLE 1209
Cdd:COG4372 345 LLLVGLLDNDVLELLSKGAE 364
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
882-1029 |
5.08e-03 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 40.95 E-value: 5.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 882 QLEQIQLELTKANEKAVQLQKNVEQTAQKAEQSQQEtlktHQEELKKM-QDQLTDMKKQMETSQNQYKDLQAKYEKETSE 960
Cdd:PRK09510 63 QYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAA----EQERLKQLeKERLAAQEQKKQAEEAAKQAALKQKQAEEAA 138
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024359659 961 MITKHDADIKGFKQNLLDAEEALKAAQ--KKNDELETQ---AEELKKQAEQAKADKRAEEVLQTMEKVTKEKDA 1029
Cdd:PRK09510 139 AKAAAAAKAKAEAEAKRAAAAAKKAAAeaKKKAEAEAAkkaAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAA 212
|
|
| Leu_zip |
pfam15294 |
Leucine zipper; This family includes Leucine zipper transcription factor-like protein 1 ... |
583-717 |
5.39e-03 |
|
Leucine zipper; This family includes Leucine zipper transcription factor-like protein 1 (LZTFL1) and Leucine zipper protein 2 (LUZP2).
Pssm-ID: 464620 [Multi-domain] Cd Length: 276 Bit Score: 40.46 E-value: 5.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 583 EALRKEIKTLSASNERMGKENESLKTKLDHANKEnsdvielwKSKLESAIASHQQAMEELKVSFNkgvgaQTAEFAELKT 662
Cdd:pfam15294 129 ALLHMEIERLKEENEKLKERLKTLESQATQALDE--------KSKLEKALKDLQKEQGAKKDVKS-----NLKEISDLEE 195
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 2024359659 663 QMEKVKLDYENEMSNLKlkqeNEKSQHLKEIEALKAKLLEVTEEKEQTLENLKAK 717
Cdd:pfam15294 196 KMAALKSDLEKTLNAST----ALQKSLEEDLASTKHELLKVQEQLEMAEKELEKK 246
|
|
| Laminin_I |
pfam06008 |
Laminin Domain I; coiled-coil structure. It has been suggested that the domains I and II from ... |
983-1184 |
5.60e-03 |
|
Laminin Domain I; coiled-coil structure. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure.
Pssm-ID: 310534 [Multi-domain] Cd Length: 258 Bit Score: 40.09 E-value: 5.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 983 LKAAQKKNDELETQAEELKKQAEQ--AKADKRAEEVLQTMEKVTKEKDAIHQ---------EKIETLASLEN---SRQTN 1048
Cdd:pfam06008 42 IEILEKELSSLAQETEELQKKATQtlAKAQQVNAESERTLGHAKELAEAIKNlidnikeinEKVATLGENDFalpSSDLS 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1049 EKLQNELDMLKQNNLKN--------EEELTKSKELLNLENKKVEELKKEFEALKLAAAQKsqqlaaLQEENVKLaEELGR 1120
Cdd:pfam06008 122 RMLAEAQRMLGEIRSRDfgtqlqnaEAELKAAQDLLSRIQTWFQSPQEENKALANALRDS------LAEYEAKL-SDLRE 194
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024359659 1121 SRDEVTSHQKLEEERSVLNNQLLEMKKREstlKKEIDEERASLQKSISDTSALITQKDEELEKL 1184
Cdd:pfam06008 195 LLREAAAKTRDANRLNLANQANLREFQRK---KEEVSEQKNQLEETLKTARDSLDAANLLLQEI 255
|
|
| Laminin_I |
pfam06008 |
Laminin Domain I; coiled-coil structure. It has been suggested that the domains I and II from ... |
876-1104 |
6.35e-03 |
|
Laminin Domain I; coiled-coil structure. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure.
Pssm-ID: 310534 [Multi-domain] Cd Length: 258 Bit Score: 40.09 E-value: 6.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 876 LRLKERQLEQIQLELTKANEKAVQLQKNVEQTAQKAEQSQQETLKTHQ------EELKKMQDQLTDMKKQMETSQNQYKD 949
Cdd:pfam06008 35 ENAHKIQIEILEKELSSLAQETEELQKKATQTLAKAQQVNAESERTLGhakelaEAIKNLIDNIKEINEKVATLGENDFA 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 950 LQAKYEKETSEMITKHDADIKG--FKQNLLDAEEALKAAQKKNDELETQAEELKKQaeqakadkraeevLQTMEKVTKEK 1027
Cdd:pfam06008 115 LPSSDLSRMLAEAQRMLGEIRSrdFGTQLQNAEAELKAAQDLLSRIQTWFQSPQEE-------------NKALANALRDS 181
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024359659 1028 DAIHQEKIETLASLENSRQTNEKLQNELDMLKQNNLkneEELTKSKELLNLENKKVEELKKEFEALKLAAAQKSQQL 1104
Cdd:pfam06008 182 LAEYEAKLSDLRELLREAAAKTRDANRLNLANQANL---REFQRKKEEVSEQKNQLEETLKTARDSLDAANLLLQEI 255
|
|
| PYST-B |
TIGR01597 |
Plasmodium yoelii subtelomeric family PYST-B; This model represents a paralogous family of ... |
945-1071 |
6.61e-03 |
|
Plasmodium yoelii subtelomeric family PYST-B; This model represents a paralogous family of Plasmodium yoelii genes preferentially located in the subtelomeric regions of the chromosomes. There are no obvious homologs to these genes in any other organism.
Pssm-ID: 130658 Cd Length: 255 Bit Score: 39.88 E-value: 6.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 945 NQYKDLQAKyEKETSEMITKHDADIKGFKQN--LLDAEEALKAAQKKNDELETQAEELKKQAEQAKADKRAEEVLQTMEK 1022
Cdd:TIGR01597 69 NQFNDCNDD-DKEIAHLRNIIDSHIKKHKERntLPDLNNVDKKTKKLINKLQKELEELKKELDNEMNDELTIQPIHDKII 147
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 2024359659 1023 VTKEKDAIHQEKiETLASLENSRQTNEKLQNELDMLKQNNLKNEEELTK 1071
Cdd:TIGR01597 148 IKKDENNSVSEH-EDFKQLENEKNSSVSEHEEFDIASSDNLKIKRKLKK 195
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
1065-1293 |
6.89e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 40.81 E-value: 6.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1065 NEEELTKskELLNLENKK-------VEELKKEFEAL--KLAAAQKSQQLAALQEENVKLAEELGRS----RDEV------ 1125
Cdd:PRK10929 24 DEKQITQ--ELEQAKAAKtpaqaeiVEALQSALNWLeeRKGSLERAKQYQQVIDNFPKLSAELRQQlnneRDEPrsvppn 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1126 TSHQKLEEERSVLNNQLLEmKKREstLKKEIDEERAslqksISDTSALITQKDEELEKLRNEITV-LRGENASAKTL-QS 1203
Cdd:PRK10929 102 MSTDALEQEILQVSSQLLE-KSRQ--AQQEQDRARE-----ISDSLSQLPQQQTEARRQLNEIERrLQTLGTPNTPLaQA 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1204 VVKTLESDKLKLEEKVKNLE-QKLKAKSEQPLTvtspsgdiaanLLQDESAEDKQQEIDflnsviVDLQRRNEELNLKIQ 1282
Cdd:PRK10929 174 QLTALQAESAALKALVDELElAQLSANNRQELA-----------RLRSELAKKRSQQLD------AYLQALRNQLNSQRQ 236
|
250
....*....|.
gi 2024359659 1283 RMCEAALNGNE 1293
Cdd:PRK10929 237 REAERALESTE 247
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
447-740 |
7.24e-03 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 40.90 E-value: 7.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 447 EEESITKGDLERKRQISEDPENTQTKLEHARIKELEQSllfeKTKADKLQRELEDTRVATVSEKSRIMELERDLALRVKE 526
Cdd:pfam09731 122 SEQEKEKALEEVLKEAISKAESATAVAKEAKDDAIQAV----KAHTDSLKEASDTAEISREKATDSALQKAEALAEKLKE 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 527 VAELRGRLESSKHIDDVDTSLSLLQEISSLQEKMAAAGKEHQREMSSLKEKFESSEEALRKEIKTL-------------- 592
Cdd:pfam09731 198 VINLAKQSEEEAAPPLLDAAPETPPKLPEHLDNVEEKVEKAQSLAKLVDQYKELVASERIVFQQELvsifpdiipvlked 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 593 -SASNERMGKENESLKTKLDHANKENSDVIELWKSKLESAIASH----QQAMEELKVSFNKGVGAQTAEF-AELKTQMEK 666
Cdd:pfam09731 278 nLLSNDDLNSLIAHAHREIDQLSKKLAELKKREEKHIERALEKQkeelDKLAEELSARLEEVRAADEAQLrLEFEREREE 357
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024359659 667 VKLDYENEMSNLKLKQENEKSQHLKEIEALKAKLLevteeKEQTLENLKAKLESVEDQHLVEMEDTLNKLQEAE 740
Cdd:pfam09731 358 IRESYEEKLRTELERQAEAHEEHLKDVLVEQEIEL-----QREFLQDIKEKVEEERAGRLLKLNELLANLKGLE 426
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
548-1022 |
7.48e-03 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 40.44 E-value: 7.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 548 SLLQEISSLQEKMAAAgkEHQREMSSLKEKFESSeeaLRKEIKTLSASNERMGKENESLKTKLDHANKEnsdVIELwksk 627
Cdd:pfam05622 32 SLQQENKKLQERLDQL--ESGDDSGTPGGKKYLL---LQKQLEQLQEENFRLETARDDYRIKCEELEKE---VLEL---- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 628 lesaiashQQAMEELKvsfnkgvgAQTAEFAELKTQMEkvkldyenemsnlKLKQENEKsqhLKEIEAlkakLLEVTEEK 707
Cdd:pfam05622 100 --------QHRNEELT--------SLAEEAQALKDEMD-------------ILRESSDK---VKKLEA----TVETYKKK 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 708 EQTLENLKAKLESVEDQHLVEMEDTLnKLQEAEIKVSNLTKELQGKEQKLLDLEKNLSAVNQVKDSLEKELQLLKEKFTS 787
Cdd:pfam05622 144 LEDLGDLRRQVKLLEERNAEYMQRTL-QLEEELKKANALRGQLETYKRQVQELHGKLSEESKKADKLEFEYKKLEEKLEA 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 788 AVDGAEN--AQR-AMQETINKLNQKEEQFALMSSELEQLKSNLTVMETKLKEREEREQQLTEAKVKLENDIAEiMKSSGD 864
Cdd:pfam05622 223 LQKEKERliIERdTLRETNEELRCAQLQQAELSQADALLSPSSDPGDNLAAEIMPAEIREKLIRLQHENKMLR-LGQEGS 301
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 865 SSAQLMKMNDELRLKERQLEQIQLELTKANEKAVQLQKNVEQtAQKAEQSQ----------QETLKTHQEELKKMQDQLT 934
Cdd:pfam05622 302 YRERLTELQQLLEDANRRKNELETQNRLANQRILELQQQVEE-LQKALQEQgskaedssllKQKLEEHLEKLHEAQSELQ 380
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 935 DMKKQMETSQNQYKDLQAKYEKETSEMITKHDADIKG----FKQNLLDAEEALKAAQ-KKNDELETQAEELKKQAeqAKA 1009
Cdd:pfam05622 381 KKKEQIEELEPKQDSNLAQKIDELQEALRKKDEDMKAmeerYKKYVEKAKSVIKTLDpKQNPASPPEIQALKNQL--LEK 458
|
490
....*....|...
gi 2024359659 1010 DKRAEEVLQTMEK 1022
Cdd:pfam05622 459 DKKIEHLERDFEK 471
|
|
| ClyA_XaxA-like |
cd22657 |
Xenorhabdus nematophila alpha-xenorhabdolysin (XaxA) and Yersinia enterocolitica YaxA, and ... |
690-878 |
7.85e-03 |
|
Xenorhabdus nematophila alpha-xenorhabdolysin (XaxA) and Yersinia enterocolitica YaxA, and similar proteins; This model includes Xenorhabdus nematophila alpha-xenorhabdolysin (XaxA) and Yersinia enterocolitica YaxA, both parts of two-component alpha-helical pore-forming toxins (alpha-PFTs). The xaxAB genes encoding the XaxAB toxin have also been also identified in various plant and human pathogens. XaxAB triggers necrosis and apoptosis in both insect hemocytes and mammalian cells. Structure studies show that component A binds to component B's back, forming a subunit; twelve to fifteen of these subunits then conjoin as the pore-forming toxin. Component A stabilizes each subunit on the membrane and activates component B, which then punctures the membrane by swinging out its lower end. Similarly, Yersinia enterocolitica YaxA, encoded by the yaxAB gene, forms a pore predominantly composed of decamers of YaxA-YaxB heterodimers. Although both subunits bear membrane-active moieties, only YaxA is capable of binding to membranes by itself and YaxB is subsequently recruited to membrane-associated YaxA and induced to present its lytic transmembrane helices; pore formation then progresses by further oligomerization of YaxA-YaxB dimers. YaxAB has been found to be strongly upregulated by the Yersinia master regulator RovA, a transcriptional activator of Yersinia outer membrane protein invasion which is involved in bacterial attachment and invasion across the intestinal epithelium.
Pssm-ID: 439155 [Multi-domain] Cd Length: 306 Bit Score: 39.88 E-value: 7.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 690 LKEIEALKAKL---LEVTEEKEQTLENLKAKLESVEDqhlvEMEDTLN---KLQEAEIKVSNLTKELQGKEQKLLDLEKN 763
Cdd:cd22657 87 IEIISDLGEYLediKEDIKEYSKSTEEVKARLDDFRD----ELREELIpevKLKLKLIDRNDLDEEIEELNEEIDELDEE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 764 LsavnqvkDSLEKEL-QLLKEKFTSAVDG--------------AENAQR---AMQETINKLNQKEEQFALMSSELEQLKS 825
Cdd:cd22657 163 I-------DELNKEYkKLVGLAFTGLAGGpigllitggifgvkAEKIRKernELIAEREELIQKLKSKNRLLGSLERLET 235
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 2024359659 826 NLTVMETKLKEREEREQQLTEAKVKLENDIAEimkssgdSSAQLMKMNDELRL 878
Cdd:cd22657 236 DLQDLDIRMIDAEVATKNLETVWNTILTYIDA-------SAEELDKIDDALSL 281
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
360-599 |
8.08e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.82 E-value: 8.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 360 EKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALVRDGHDRHVLEMEAKMDQLRAMVEAADREKVELLNQLEEEKRKV 439
Cdd:TIGR02169 791 SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL 870
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 440 EDLQFRVEEESITKGDLERKR-----QISEDPENTQTKLEHARIKELEQSLLFEKTKADKLQ-RELEDTRVATVSEKSRI 513
Cdd:TIGR02169 871 EELEAALRDLESRLGDLKKERdeleaQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEElSEIEDPKGEDEEIPEEE 950
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 514 MELErDLALRVKEVAELRGRLES--SKHIDDVDTSLSLLQEISSLQEKMaaagkehQREMSSLKEKFESSEEaLRKEI-- 589
Cdd:TIGR02169 951 LSLE-DVQAELQRVEEEIRALEPvnMLAIQEYEEVLKRLDELKEKRAKL-------EEERKAILERIEEYEK-KKREVfm 1021
|
250
....*....|
gi 2024359659 590 KTLSASNERM 599
Cdd:TIGR02169 1022 EAFEAINENF 1031
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
714-1033 |
8.83e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 40.27 E-value: 8.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 714 LKAKLESVEDQHLVEMEDTLNKLQEAEIKVSNLTKELQGKEQKLLDLEKNLSAVNQVKDSLEKELQLLKEKFTSAVDGAE 793
Cdd:COG4372 25 LIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 794 NAQRAMQETINKLNQKEEQFALMSSELEQLKSNLTVMETKLKEREEREQQLTEAKVKLENDIAEIMKS-SGDSSAQLMKM 872
Cdd:COG4372 105 SLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQElQALSEAEAEQA 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 873 NDELRLKERQLEQIQLELTKANEKAVQLQKNVEQTAQKAEQSQQETL-KTHQEELKKMQDQLTDMKKQMETSQNQYKDLQ 951
Cdd:COG4372 185 LDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLgLALSALLDALELEEDKEELLEEVILKEIEELE 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 952 AKYEKETSEMITKHDADIKGFKQNLLDAEEALKAAQKKNDELETQAEELKKQAEQAKADKRAEEVLQTMEKVTKEKDAIH 1031
Cdd:COG4372 265 LAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQ 344
|
..
gi 2024359659 1032 QE 1033
Cdd:COG4372 345 LL 346
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
761-1068 |
9.14e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 40.66 E-value: 9.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 761 EKNLSAVNQVKDSLEKELQLLKEKFTSAVDGAENAQRamqeTINKLNQKEEQfAL-----MSSELEQLKSNLTVMETKLK 835
Cdd:PLN02939 106 EAIAAIDNEQQTNSKDGEQLSDFQLEDLVGMIQNAEK----NILLLNQARLQ-ALedlekILTEKEALQGKINILEMRLS 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 836 EREEREQqlTEAKVKLENDIAEimkssgdssAQLMKMNDEL----RLKERQLEQIQLELTKANEKAVQLQKNVEqtaqka 911
Cdd:PLN02939 181 ETDARIK--LAAQEKIHVEILE---------EQLEKLRNELlirgATEGLCVHSLSKELDVLKEENMLLKDDIQ------ 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 912 eqsqqeTLKTHQEELKKMQDQLTDMKKQMETSQNQYKDLQAKYEKETSEMIT----KHDADIKGFK--QNLLD--AEEAL 983
Cdd:PLN02939 244 ------FLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKlsplQYDCWWEKVEnlQDLLDraTNQVE 317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 984 KAAQ--KKNDELETQAEELKKQAEQAKADKRAEEVLQTM-EKVTKEKDAIHQEKIETLASLENSRQTNEKLQNELdmlkq 1060
Cdd:PLN02939 318 KAALvlDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLqQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTL----- 392
|
....*...
gi 2024359659 1061 NNLKNEEE 1068
Cdd:PLN02939 393 SKLKEESK 400
|
|
| CCCAP |
pfam15964 |
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in ... |
987-1277 |
9.29e-03 |
|
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in eukaryotes. CCCAP is also known as SDCCAG8, serologically defined colon cancer antigen 8. It is associated with the centrosome.
Pssm-ID: 435040 [Multi-domain] Cd Length: 703 Bit Score: 40.27 E-value: 9.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 987 QKKNDELETQAEELKKQAEQAKA-----DKRAEEVLQTMEKVTKEKDAIHQEKIETLASLENSRQTNEKLQNELD-MLKQ 1060
Cdd:pfam15964 381 EKRAQEKEALRKEMKKEREELGAtmlalSQNVAQLEAQVEKVTREKNSLVSQLEEAQKQLASQEMDVTKVCGEMRyQLNQ 460
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1061 NNLKNEEE-------LTKSKELLNLENKKVEELKKEFEALKLAAAQKSQQLAALQEENVKLAEELGRSRDEV--TSHQKL 1131
Cdd:pfam15964 461 TKMKKDEAekehreyRTKTGRQLEIKDQEIEKLGLELSESKQRLEQAQQDAARAREECLKLTELLGESEHQLhlTRLEKE 540
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 1132 EEERSVLNN---QLLEMKKRESTLKKEIDEERASLQKSISDTSALITQKDEELEKLRNEITVLrgenasaktlqsvvktl 1208
Cdd:pfam15964 541 SIQQSFSNEakaQALQAQQREQELTQKMQQMEAQHDKTVNEQYSLLTSQNTFIAKLKEECCTL----------------- 603
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2024359659 1209 esdklklEEKVKNLEQKLKAKSEQpltvtspsgdiaanllqdesaedKQQEIDFLNSVIVDLQRRNEEL 1277
Cdd:pfam15964 604 -------AKKLEEITQKSRSEVEQ-----------------------LSQEKEYLQDRLEKLQKRNEEL 642
|
|
| FPP |
pfam05911 |
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant ... |
659-803 |
9.50e-03 |
|
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant proteins that are filament-like. It interacts with the nuclear envelope-associated protein, MAF1, the WPP family pfam13943.
Pssm-ID: 461778 [Multi-domain] Cd Length: 859 Bit Score: 40.43 E-value: 9.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 659 ELKTQMEKVKLDYENEMSNLKLKQENEKSQHLKEIEALKAKLlevtEEKEQTLENLKAKLES-------VEDQ------- 724
Cdd:pfam05911 677 DLKTEENKRLKEEFEQLKSEKENLEVELASCTENLESTKSQL----QESEQLIAELRSELASlkesnslAETQlkcmaes 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 725 ------HLVEMEDTLNKLQEaeiKVSNLTKELQGKEQ-------KLLDLE------KNLSAVNQVKDSLEKELQLLKEKF 785
Cdd:pfam05911 753 yedletRLTELEAELNELRQ---KFEALEVELEEEKNcheeleaKCLELQeqlernEKKESSNCDADQEDKKLQQEKEIT 829
|
170
....*....|....*...
gi 2024359659 786 TSAVDGAEnaqraMQETI 803
Cdd:pfam05911 830 AASEKLAE-----CQETI 842
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
652-917 |
9.62e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.49 E-value: 9.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 652 AQTAEFAELKTQM----EKVKLDYENEMSNLKLKQENEKsqhlKEIEALKAKLLEVTEEKEQTLENLKakLESVEDQHLV 727
Cdd:pfam17380 321 AEKARQAEMDRQAaiyaEQERMAMERERELERIRQEERK----RELERIRQEEIAMEISRMRELERLQ--MERQQKNERV 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 728 EMEdtlnklQEAEIKVSNLTKELQGKEQKLLDLEKNLSAvnQVKDSLEKELQLLKEKFTSAVDGAENAQRAMQETINKLN 807
Cdd:pfam17380 395 RQE------LEAARKVKILEEERQRKIQQQKVEMEQIRA--EQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLR 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024359659 808 QKEEQFALMSSELEQLKSNLTVMETKL-----KEREEREQQLTEAKVK---LENDIAEimKSSGDSSAQLMKMNDELRLK 879
Cdd:pfam17380 467 QQEEERKRKKLELEKEKRDRKRAEEQRrkileKELEERKQAMIEEERKrklLEKEMEE--RQKAIYEEERRREAEEERRK 544
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 2024359659 880 ERQLE---QIQLELTKANEK-----AVQLQKNVEQTAQKAEQSQQE 917
Cdd:pfam17380 545 QQEMEerrRIQEQMRKATEErsrleAMEREREMMRQIVESEKARAE 590
|
|
| |
