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Conserved domains on  [gi|2024474044|ref|XP_040521476|]
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leucine-rich repeat-containing protein 61 [Gallus gallus]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 11469232)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions

Gene Ontology:  GO:0005515
PubMed:  11751054|7583641|14747988
SCOP:  4003523

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
36-112 4.73e-17

Leucine-rich repeat (LRR) protein [Transcription];


:

Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 79.98  E-value: 4.73e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024474044  36 LKLRGRGIADLGC-LGDCTNLEWLDLSGNAISQLG-PLAGLKALAVLNLSRNRISSL-EPLSSCESLQSLNLAGNQVSSL 112
Cdd:COG4886   141 LDLSNNQLTDLPEpLGNLTNLKSLDLSNNQLTDLPeELGNLTNLKELDLSNNQITDLpEPLGNLTNLEELDLSGNQLTDL 220
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
36-112 4.73e-17

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 79.98  E-value: 4.73e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024474044  36 LKLRGRGIADLGC-LGDCTNLEWLDLSGNAISQLG-PLAGLKALAVLNLSRNRISSL-EPLSSCESLQSLNLAGNQVSSL 112
Cdd:COG4886   141 LDLSNNQLTDLPEpLGNLTNLKSLDLSNNQLTDLPeELGNLTNLKELDLSNNQITDLpEPLGNLTNLEELDLSGNQLTDL 220
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 49-166 7.76e-13

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 65.58  E-value: 7.76e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024474044  49 LGDCTNLEWLDLSGNAISQLGPLAGLKALAVLNLSRNRISSLEPLSSC------------------------------ES 98
Cdd:cd21340    42 LEFLTNLTHLYLQNNQIEKIENLENLVNLKKLYLGGNRISVVEGLENLtnleelhienqrlppgekltfdprslaalsNS 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024474044  99 LQSLNLAGNQVSSLQQLRCL--------AGLRRLESLRLRDALGQLS---------NPVCATAAYRAALPELLPGLRDID 161
Cdd:cd21340   122 LRVLNISGNNIDSLEPLAPLrnleqldaSNNQISDLEELLDLLSSWPslreldltgNPVCKKPKYRDKIILASKSLEVLD 201


                  ....*
gi 2024474044 162 GERVS 166
Cdd:cd21340   202 GKEIT 206
LRR_8 pfam13855
Leucine rich repeat;
53-109 5.85e-11

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 56.76  E-value: 5.85e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2024474044  53 TNLEWLDLSGNAISQLGP--LAGLKALAVLNLSRNRISSLEP--LSSCESLQSLNLAGNQV 109
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDgaFKGLSNLKVLDLSNNLLTTLSPgaFSGLPSLRYLDLSGNRL 61
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 54-110 1.50e-06

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 49.08  E-value: 1.50e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2024474044  54 NLEWLDLSGNAISQLGP--LAGLKALAVLNLSRNRISSLEP--LSSCESLQSLNLAGNQVS 110
Cdd:PLN00113  476 RLENLDLSRNQFSGAVPrkLGSLSELMQLKLSENKLSGEIPdeLSSCKKLVSLDLSHNQLS 536
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
36-112 4.73e-17

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 79.98  E-value: 4.73e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024474044  36 LKLRGRGIADLGC-LGDCTNLEWLDLSGNAISQLG-PLAGLKALAVLNLSRNRISSL-EPLSSCESLQSLNLAGNQVSSL 112
Cdd:COG4886   141 LDLSNNQLTDLPEpLGNLTNLKSLDLSNNQLTDLPeELGNLTNLKELDLSNNQITDLpEPLGNLTNLEELDLSGNQLTDL 220
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
36-154 2.02e-16

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 78.05  E-value: 2.02e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024474044  36 LKLRGRGIADLGC-LGDCTNLEWLDLSGNAISQLGPLAGLKALAVLNLSRNRISSLEPLSSCESLQSLNLAGNQVSSLqQ 114
Cdd:COG4886   210 LDLSGNQLTDLPEpLANLTNLETLDLSNNQLTDLPELGNLTNLEELDLSNNQLTDLPPLANLTNLKTLDLSNNQLTDL-K 288

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 2024474044 115 LRCLAGLRRLESLRLRDALGQLSNPVCATAAYRAALPELL 154
Cdd:COG4886   289 LKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLL 328
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 49-166 7.76e-13

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 65.58  E-value: 7.76e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024474044  49 LGDCTNLEWLDLSGNAISQLGPLAGLKALAVLNLSRNRISSLEPLSSC------------------------------ES 98
Cdd:cd21340    42 LEFLTNLTHLYLQNNQIEKIENLENLVNLKKLYLGGNRISVVEGLENLtnleelhienqrlppgekltfdprslaalsNS 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024474044  99 LQSLNLAGNQVSSLQQLRCL--------AGLRRLESLRLRDALGQLS---------NPVCATAAYRAALPELLPGLRDID 161
Cdd:cd21340   122 LRVLNISGNNIDSLEPLAPLrnleqldaSNNQISDLEELLDLLSSWPslreldltgNPVCKKPKYRDKIILASKSLEVLD 201


                  ....*
gi 2024474044 162 GERVS 166
Cdd:cd21340   202 GKEIT 206
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 30-118 5.00e-12

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 63.27  E-value: 5.00e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024474044  30 LESILLLKLRGRGIADLGCLGDCTNLEWLDLSGNAISQLGPLAGLKALAVLNLSRNRISSLEPLSSCESLQSLNLAGNQ- 108
Cdd:cd21340     1 LKRITHLYLNDKNITKIDNLSLCKNLKVLYLYDNKITKIENLEFLTNLTHLYLQNNQIEKIENLENLVNLKKLYLGGNRi 80

                          90
                  ....*....|..
gi 2024474044 109 --VSSLQQLRCL 118
Cdd:cd21340    81 svVEGLENLTNL 92
LRR_8 pfam13855
Leucine rich repeat;
53-109 5.85e-11

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 56.76  E-value: 5.85e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2024474044  53 TNLEWLDLSGNAISQLGP--LAGLKALAVLNLSRNRISSLEP--LSSCESLQSLNLAGNQV 109
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDgaFKGLSNLKVLDLSNNLLTTLSPgaFSGLPSLRYLDLSGNRL 61
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
30-115 1.89e-10

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 60.33  E-value: 1.89e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024474044  30 LESILLLKLRGRGIADLGCLGDCTNLEWLDLSGNAISQLGPLAGLKALAVLNLSRNRISSLEpLSSCESLQSLNLAGNQV 109
Cdd:COG4886   227 LTNLETLDLSNNQLTDLPELGNLTNLEELDLSNNQLTDLPPLANLTNLKTLDLSNNQLTDLK-LKELELLLGLNSLLLLL 305


                  ....*.
gi 2024474044 110 SSLQQL 115
Cdd:COG4886   306 LLLNLL 311
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
29-112 6.66e-10

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 58.79  E-value: 6.66e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024474044  29 ALESILLLKLRGRGIADLGCLGDCTNLEWL-----------------DLSGNAISQLGP-LAGLKALAVLNLSRNRISSL 90
Cdd:COG4886    72 LLLLLLSLLLLSLLLLGLTDLGDLTNLTELdlsgneelsnltnleslDLSGNQLTDLPEeLANLTNLKELDLSNNQLTDL 151

                          90       100
                  ....*....|....*....|...
gi 2024474044  91 -EPLSSCESLQSLNLAGNQVSSL 112
Cdd:COG4886   152 pEPLGNLTNLKSLDLSNNQLTDL 174
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 53-95 2.17e-08

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 49.17  E-value: 2.17e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 2024474044  53 TNLEWLDLSGNAISQLGPLAGLKALAVLNLSRN-RISSLEPLSS 95
Cdd:pfam12799   1 PNLEVLDLSNNQITDIPPLAKLPNLETLDLSGNnKITDLSDLAN 44
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 75-116 2.75e-07

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 46.08  E-value: 2.75e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 2024474044  75 KALAVLNLSRNRISSLEPLSSCESLQSLNLAGN-QVSSLQQLR 116
Cdd:pfam12799   1 PNLEVLDLSNNQITDIPPLAKLPNLETLDLSGNnKITDLSDLA 43
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 31-116 9.84e-07

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 48.24  E-value: 9.84e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024474044  31 ESILLLKLRGRGIADLGCLGDCTNLEWLDLSGNAISQLGPLaglkalavlnlsrnrissLEPLSSCESLQSLNLAGNQVS 110
Cdd:cd21340   120 NSLRVLNISGNNIDSLEPLAPLRNLEQLDASNNQISDLEEL------------------LDLLSSWPSLRELDLTGNPVC 181


                  ....*.
gi 2024474044 111 SLQQLR 116
Cdd:cd21340   182 KKPKYR 187
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 54-110 1.50e-06

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 49.08  E-value: 1.50e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2024474044  54 NLEWLDLSGNAISQLGP--LAGLKALAVLNLSRNRISSLEP--LSSCESLQSLNLAGNQVS 110
Cdd:PLN00113  476 RLENLDLSRNQFSGAVPrkLGSLSELMQLKLSENKLSGEIPdeLSSCKKLVSLDLSHNQLS 536
LRR_8 pfam13855
Leucine rich repeat;
47-87 1.32e-05

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 41.74  E-value: 1.32e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 2024474044  47 GCLGDCTNLEWLDLSGNAISQLGP--LAGLKALAVLNLSRNRI 87
Cdd:pfam13855  19 GAFKGLSNLKVLDLSNNLLTTLSPgaFSGLPSLRYLDLSGNRL 61
LRR_9 pfam14580
Leucine-rich repeat;
36-165 7.88e-05

Leucine-rich repeat;


Pssm-ID: 405295 [Multi-domain]  Cd Length: 175  Bit Score: 42.06  E-value: 7.88e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024474044  36 LKLRGRGIADLGCLGDCTN-LEWLDLSGNAISQLGPLAGLKALAVLNLSRNRI----SSLEPLSSCesLQSLNLAGNQVS 110
Cdd:pfam14580  24 LDLRGYKIPIIENLGATLDqFDTIDFSDNEIRKLDGFPLLRRLKTLLLNNNRIcrigEGLGEALPN--LTELILTNNNLQ 101

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2024474044 111 SLQQLRCLAGLRRLeslrlrDALGQLSNPVCATAAYRAALPELLPGLRDIDGERV 165
Cdd:pfam14580 102 ELGDLDPLASLKKL------TFLSLLRNPVTNKPHYRLYVIYKVPQLRLLDFRKV 150
RNA1 COG5238
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ...
 53-110 3.40e-03

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444072 [Multi-domain]  Cd Length: 434  Bit Score: 38.23  E-value: 3.40e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024474044  53 TNLEWLDLSGNAISQLGP------LAGLKALAVLNLSRNRISS------LEPLSSCESLQSLNLAGNQVS 110
Cdd:COG5238   264 TTVETLYLSGNQIGAEGAialakaLQGNTTLTSLDLSVNRIGDegaialAEGLQGNKTLHTLNLAYNGIG 333
RNA1 COG5238
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ...
 10-116 4.07e-03

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444072 [Multi-domain]  Cd Length: 434  Bit Score: 38.23  E-value: 4.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024474044  10 DGEGTRITAQLLKASTgefaleSILLLKLRGRGIADLGC------LGDCTNLEWLDLSGNAISQLGP------LAGLKAL 77
Cdd:COG5238   305 GDEGAIALAEGLQGNK------TLHTLNLAYNGIGAQGAialakaLQENTTLHSLDLSDNQIGDEGAialakyLEGNTTL 378

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 2024474044  78 AVLNLSRNRISSLEPLSSCESLQ-----SLNLAGNQVSSLQQLR 116
Cdd:COG5238   379 RELNLGKNNIGKQGAEALIDALQtnrlhTLILDGNLIGAEAQQR 422
PLN03150 PLN03150
hypothetical protein; Provisional
 55-110 5.51e-03

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 37.87  E-value: 5.51e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024474044  55 LEWLDLSGNAISQLGP--LAGLKALAVLNLSRNRISSLEP--LSSCESLQSLNLAGNQVS 110
Cdd:PLN03150  444 LQSINLSGNSIRGNIPpsLGSITSLEVLDLSYNSFNGSIPesLGQLTSLRILNLNGNSLS 503
RNA1 COG5238
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ...
 9-110 7.35e-03

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444072 [Multi-domain]  Cd Length: 434  Bit Score: 37.46  E-value: 7.35e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024474044   9 EDGEGTRITAQLLKASTGEFALE--SILLLKLRGRGIADLGC------LGDCTNLEWLDLSGNAISQLGP------LAGL 74
Cdd:COG5238   156 VHLLGLAARLGLLAAISMAKALQnnSVETVYLGCNQIGDEGIeelaeaLTQNTTVTTLWLKRNPIGDEGAeilaeaLKGN 235

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 2024474044  75 KALAVLNLSRNRISS------LEPLSSCESLQSLNLAGNQVS 110
Cdd:COG5238   236 KSLTTLDLSNNQIGDegvialAEALKNNTTVETLYLSGNQIG 277
RNA1 COG5238
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ...
 49-110 8.71e-03

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444072 [Multi-domain]  Cd Length: 434  Bit Score: 37.08  E-value: 8.71e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024474044  49 LGDCTNLEWLDLSGNAISQLGP------LAGLKALAVLNLSRNRISS------LEPLSSCESLQSLNLAGNQVS 110
Cdd:COG5238   288 LQGNTTLTSLDLSVNRIGDEGAialaegLQGNKTLHTLNLAYNGIGAqgaialAKALQENTTLHSLDLSDNQIG 361
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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