|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
77-879 |
5.13e-22 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 103.21 E-value: 5.13e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 77 KLTRENNELHLEVLKLK-EQSDHHIKDLKASLRRAENEAADLRFLNNQYVHKIKLLEKESKAKTEKIQQLQEK--NLQAV 153
Cdd:TIGR02168 217 ELKAELRELELALLVLRlEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKElyALANE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 154 VQTPGGRKRNIPFRRQRMQIDQPvppsavsaypvpqpedpYIADLLQVADNRIQELQSEVTQLQEKLEISENGKKNYSKQ 233
Cdd:TIGR02168 297 ISRLEQQKQILRERLANLERQLE-----------------ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 234 VEYLQQSNKELENRIQDLLDTKKNVTSEVVHLSNKNEELCQELNEIDHLAQQLERHKEI---VLETADKEIGEAKK---- 306
Cdd:TIGR02168 360 LEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERlqqEIEELLKKLEEAELkelq 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 307 -EIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLELLLNQLEQEKQRLTEKTEN--FEIKERE--- 380
Cdd:TIGR02168 440 aELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGvkALLKNQSgls 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 381 ----LVLEIERMRLEYGIALGDKSPSRLDAFVKtleDDRDYYKRELEYLQKMIKRRPS----PSRRSPEKSEDLRLITRE 452
Cdd:TIGR02168 520 gilgVLSELISVDEGYEAAIEAALGGRLQAVVV---ENLNAAKKAIAFLKQNELGRVTflplDSIKGTEIQGNDREILKN 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 453 RDELQSMLDRFEKHMIEIQSNVKLLTAerdrlNILYEQSQSELNRLRREAKHNlvsQSHVGEDGDASLADFRRLmaeKES 532
Cdd:TIGR02168 597 IEGFLGVAKDLVKFDPKLRKALSYLLG-----GVLVVDDLDNALELAKKLRPG---YRIVTLDGDLVRPGGVIT---GGS 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 533 LREKLKIQQEAANLEKskmqhdisvLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAELC 612
Cdd:TIGR02168 666 AKTNSSILERRREIEE---------LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLA 736
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 613 SLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDKEKDNLQETVDEKT 692
Cdd:TIGR02168 737 RLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLN 816
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 693 EKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDL 772
Cdd:TIGR02168 817 EEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSEL 896
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 773 ATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIaskekenQELLEKFRmlhtqaEDWEIKAHQAEGESSSI 852
Cdd:TIGR02168 897 EELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRI-------DNLQERLS------EEYSLTLEEAEALENKI 963
|
810 820
....*....|....*....|....*..
gi 2024501339 853 rlellsvDTDRRHLRERVELLEKEIQE 879
Cdd:TIGR02168 964 -------EDDEEEARRRLKRLENKIKE 983
|
|
| cc_Cep135_MBD |
cd22292 |
coiled-coil microtubule binding domain of centrosomal protein of 135 kDa (Cep135) and similar ... |
81-142 |
8.04e-21 |
|
coiled-coil microtubule binding domain of centrosomal protein of 135 kDa (Cep135) and similar proteins; Cep135, also called centrosomal protein 4, is involved in early centriole assembly, duplication, biogenesis, and formation. It is required for the recruitment of CEP295 to the proximal end of new-born centrioles at the centriolar microtubule wall during early S phase in a PLK4-dependent manner. This model corresponds to a conserved coiled-coil domain of Cep135, which is critical for microtubule binding.
Pssm-ID: 412088 [Multi-domain] Cd Length: 62 Bit Score: 86.85 E-value: 8.04e-21
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024501339 81 ENNELHLEVLKLKEQSDHHIKDLKASLRRAENEAADLRFLNNQYVHKIKLLEKESKAKTEKI 142
Cdd:cd22292 1 ENNELHLELIKLKEESDAKIKDLKSSLRKLEHENADLRFLNSQYLHKIKVLEKESKAKSEKI 62
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
271-1011 |
1.30e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 85.49 E-value: 1.30e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 271 ELCQELNEIDH--LAQQLERHKEiVLETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKAd 348
Cdd:TIGR02168 217 ELKAELRELELalLVLRLEELRE-ELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALA- 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 349 dkenlelllnqleQEKQRLTEKTEnfEIKERELVLEIERMRLEYGIALGDKSPSRLDAFVKTLEDdrdyykrELEYLQKM 428
Cdd:TIGR02168 295 -------------NEISRLEQQKQ--ILRERLANLERQLEELEAQLEELESKLDELAEELAELEE-------KLEELKEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 429 IKRRPSPSRRSPEKSEDLRLITRERDELqsmLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAKHNLVS 508
Cdd:TIGR02168 353 LESLEAELEELEAELEELESRLEELEEQ---LETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKK 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 509 QShvgedgDASLADFRRLMAEKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLEN 588
Cdd:TIGR02168 430 LE------EAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 589 ELKLKSsKLIQTSDDSSQLKAELCSLHLLNEQLQRTVE-DLQHRL-SLKKDELQSAQEEIVKLEEKidrlnqkstsqdea 666
Cdd:TIGR02168 504 FSEGVK-ALLKNQSGLSGILGVLSELISVDEGYEAAIEaALGGRLqAVVVENLNAAKKAIAFLKQN-------------- 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 667 vNVLRSTITVLDKEKDN-LQETVDEKTEKIACLDDNLANKEKTITHLRLTLS----------ELESSTDQLK-------- 727
Cdd:TIGR02168 569 -ELGRVTFLPLDSIKGTeIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvdDLDNALELAKklrpgyri 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 728 -----DLLS-----------------SRDREISSLRRQLDASHTEIAETgrvkEIALKENRRLQDDLATMTRENQAvssE 785
Cdd:TIGR02168 648 vtldgDLVRpggvitggsaktnssilERRREIEELEEKIEELEEKIAEL----EKALAELRKELEELEEELEQLRK---E 720
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 786 LEDAIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHTQAEDWEIKAHQAEGESSSIRLELLSVDTDRRH 865
Cdd:TIGR02168 721 LEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 866 LRERVELLEKEIQEHMIAHQAYESQISSITKNMSKLEEDIKREHQDKSSVLADLTSVRELCVKLEASKDLLSRQLASKSM 945
Cdd:TIGR02168 801 LREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLN 880
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2024501339 946 DYEKVLGELEDVKSEAELLKKQLSSERLTIQNLETLLATSRDKEFQNHLTSHEKDSEIQLLKDKLT 1011
Cdd:TIGR02168 881 ERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS 946
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
482-1059 |
4.18e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.28 E-value: 4.18e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 482 DRLNILYEQSQSELNRLRREAKhnlvsqshvgedgDAslADFRRLMAEKESLREKLKIQQ-EAANLEKSKMQHDISVLEN 560
Cdd:COG1196 189 ERLEDILGELERQLEPLERQAE-------------KA--ERYRELKEELKELEAELLLLKlRELEAELEELEAELEELEA 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 561 NIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQ 640
Cdd:COG1196 254 ELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELE 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 641 SAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELE 720
Cdd:COG1196 334 ELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALL 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 721 SSTDQLKDLLSSRDREISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRV 800
Cdd:COG1196 414 ERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARL 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 801 HNYITEVSRFESLIAS-KEKENQELLEKFRMLHTQAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEK---- 875
Cdd:COG1196 494 LLLLEAEADYEGFLEGvKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAkagr 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 876 --EIQEHMIAHQAYESQISSITKNMSK--LEEDIKREHQDKSSVLADLTSVRELCVKLEASKDLLSRQLASksmDYEKVL 951
Cdd:COG1196 574 atFLPLDKIRARAALAAALARGAIGAAvdLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAG---RLREVT 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 952 GELEDVKSEAELLKKQLSSERLTIQNLETLLATSRDKEFQNHLTSHEKDSEIQLLKDKLTLAEGKLSSHNREVSMLRSKV 1031
Cdd:COG1196 651 LEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQL 730
|
570 580
....*....|....*....|....*...
gi 2024501339 1032 AQLQTdyDVLKRQLTTERFERERAIQEM 1059
Cdd:COG1196 731 EAERE--ELLEELLEEEELLEEEALEEL 756
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
408-1060 |
4.87e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 73.95 E-value: 4.87e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 408 VKTLEDDRDYYKRELEYLQKMIKRRPSPSRRSPEKSEdlrlitRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNIL 487
Cdd:TIGR02169 200 LERLRREREKAERYQALLKEKREYEGYELLKEKEALE------RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQL 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 488 YEQSQSELNRLRREAKHNLVSQSHvgeDGDASLADFRRLMAEKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFEL 567
Cdd:TIGR02169 274 LEELNKKIKDLGEEEQLRVKEKIG---ELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERK 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 568 ERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAELcslhllnEQLQRTVEDLQHRLSLKKDELQSAQEEIV 647
Cdd:TIGR02169 351 RRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKL-------EKLKREINELKRELDRLQEELQRLSEELA 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 648 KLEEKIDRLNQKSTSQDEAVNVLRSTITVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLK 727
Cdd:TIGR02169 424 DLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASE 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 728 DLLSSRDREISSLRRQLDASHTEIAETGRVKE-----IALKENRRLQ-----DDL----------------ATMTRENQA 781
Cdd:TIGR02169 504 ERVRGGRAVEEVLKASIQGVHGTVAQLGSVGEryataIEVAAGNRLNnvvveDDAvakeaiellkrrkagrATFLPLNKM 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 782 VSSELEDAIREKEEMKTRVHNYITEVSRFES---------LIASKEKENQELLEKFRML----------------HTQAE 836
Cdd:TIGR02169 584 RDERRDLSILSEDGVIGFAVDLVEFDPKYEPafkyvfgdtLVVEDIEAARRLMGKYRMVtlegelfeksgamtggSRAPR 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 837 DWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQEHMIAHQAYESQISSITKNMSKLEEDIKREHQDKSSVL 916
Cdd:TIGR02169 664 GGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELE 743
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 917 ADLTSVRELCVKLEASKDLLSRQLASKSMDYEKVLGELEDVK-----SEAELLKKQLSSERLTIQNLETLLATSRDKEFQ 991
Cdd:TIGR02169 744 EDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEarlshSRIPEIQAELSKLEEEVSRIEARLREIEQKLNR 823
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2024501339 992 NHLTSHEKDSEIQLLKDKLTLAEGKLSSHNREVSMLRSKVAQLQT---DYDVLKRQLTTERF----ERERAIQEMR 1060
Cdd:TIGR02169 824 LTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEeleELEAALRDLESRLGdlkkERDELEAQLR 899
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
203-934 |
3.97e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.40 E-value: 3.97e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 203 DNRIQELQSEVTQLQEklEISENGKKNYSKQVEyLQQSNKEL----ENRIQDLLDTKKNVTSEVVHLSNKNEELCQELNE 278
Cdd:TIGR02169 243 ERQLASLEEELEKLTE--EISELEKRLEEIEQL-LEELNKKIkdlgEEEQLRVKEKIGELEAEIASLERSIAEKERELED 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 279 IDHLAQQLERHKEIVLETA---DKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLEL 355
Cdd:TIGR02169 320 AEERLAKLEAEIDKLLAEIeelEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKR 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 356 LLNQLEQEKQRLTEKTENFEIKERELVLEIERMRleygialgdkspSRLDAFVKTLEDDRDYYKRELEYLQKMIKRRPSP 435
Cdd:TIGR02169 400 EINELKRELDRLQEELQRLSEELADLNAAIAGIE------------AKINELEEEKEDKALEIKKQEWKLEQLAADLSKY 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 436 SRRSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQ---SQSELNRLRRE-------AKHN 505
Cdd:TIGR02169 468 EQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGvhgTVAQLGSVGERyataievAAGN 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 506 LVSQSHVGEDGDA--SLADFRRLMAEKESLREKLKIQQEAANLEKSKMQHDISVLENNI---QQFE------------LE 568
Cdd:TIGR02169 548 RLNNVVVEDDAVAkeAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVefdPKYEpafkyvfgdtlvVE 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 569 RCELKSTISIlKERIKSLENEL------------KLKSSKLIQTSD--DSSQLKAELCSLHLLNEQLQRTVEDLQHRLSL 634
Cdd:TIGR02169 628 DIEAARRLMG-KYRMVTLEGELfeksgamtggsrAPRGGILFSRSEpaELQRLRERLEGLKRELSSLQSELRRIENRLDE 706
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 635 KKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRL 714
Cdd:TIGR02169 707 LSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEA 786
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 715 TLSEleSSTDQLKDLLSSRDREISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKE 794
Cdd:TIGR02169 787 RLSH--SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKE 864
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 795 EMKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHTQAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLE 874
Cdd:TIGR02169 865 ELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDE 944
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 875 KEIQEHMIAHQAYEsQISSITKNMSKLEEDIKREHQDKSSVLADLTSVRELCVKLEASKD 934
Cdd:TIGR02169 945 EIPEEELSLEDVQA-ELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERK 1003
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
265-977 |
7.15e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 66.58 E-value: 7.15e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 265 LSNKNEELCQELNEIDHLAQQLErHKEIVLETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELF 344
Cdd:TIGR04523 28 ANKQDTEEKQLEKKLKTIKNELK-NKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLS 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 345 GKADDKENLELLLNQLEQEKQRLTEKTEnfEIKERELVLEIERMRLEYGIALGDKSPSRLDAFVKTLEDDRDYYKRELEY 424
Cdd:TIGR04523 107 KINSEIKNDKEQKNKLEVELNKLEKQKK--ENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLN 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 425 LQKMIKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAKH 504
Cdd:TIGR04523 185 IQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNK 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 505 NLVSQSHvgedgdasladfrrlmAEKESLREKLKIQQEAANLEKSKMQhdISVLENNIQQFELErcELKSTISILKERIK 584
Cdd:TIGR04523 265 IKKQLSE----------------KQKELEQNNKKIKELEKQLNQLKSE--ISDLNNQKEQDWNK--ELKSELKNQEKKLE 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 585 SLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQD 664
Cdd:TIGR04523 325 EIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQE 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 665 EAVNVLRSTITVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQL 744
Cdd:TIGR04523 405 KLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNL 484
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 745 DAshteiaetgRVKEIALKENrrlqdDLATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKEnqel 824
Cdd:TIGR04523 485 EQ---------KQKELKSKEK-----ELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDE---- 546
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 825 lekfrmlhtqaedweikahqaegesssirleLLSVDTDRRHlrervELLEKEIQEhmiahqayesqissitknmskLEED 904
Cdd:TIGR04523 547 -------------------------------LNKDDFELKK-----ENLEKEIDE---------------------KNKE 569
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024501339 905 IKREHQDKSSVLADLTSVRELCVKLEASKDLLSRQLASKSMDYEKVLGELEDVKSEaellKKQLSSERLTIQN 977
Cdd:TIGR04523 570 IEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKE----NEKLSSIIKNIKS 638
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
205-981 |
8.31e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 66.63 E-value: 8.31e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 205 RIQELQSEVTQLQEKLEISENGKKNYSKQVEYLQQSN-KELENRIQDLLDTKKNVTSEvvhLSNKNEELCQELNEIDHLA 283
Cdd:TIGR02169 188 RLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEgYELLKEKEALERQKEAIERQ---LASLEEELEKLTEEISELE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 284 QQLERhKEIVLETADKEIGEA--------KKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLEL 355
Cdd:TIGR02169 265 KRLEE-IEQLLEELNKKIKDLgeeeqlrvKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELER 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 356 LLNQLEQEKQRLTEktenfEIKERELVLEIERMRLEYGIALGDKSPSRLDAFVKTLEDdrdyYKRELEYLQKMIKRRPSP 435
Cdd:TIGR02169 344 EIEEERKRRDKLTE-----EYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEK----LKREINELKRELDRLQEE 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 436 SRRSPEKSEDLRL--------ITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNIL---YEQSQSELNRLRREAKH 504
Cdd:TIGR02169 415 LQRLSEELADLNAaiagieakINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLkeeYDRVEKELSKLQRELAE 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 505 NLVSQSHVGEDG----------DASLADFRRLMAEKESLREKL------------------------------------- 537
Cdd:TIGR02169 495 AEAQARASEERVrggraveevlKASIQGVHGTVAQLGSVGERYataievaagnrlnnvvveddavakeaiellkrrkagr 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 538 -------KIQQEAANLEKSKMQHDISVLENNI---QQFE------------LERCELKSTISIlKERIKSLENELKLKSS 595
Cdd:TIGR02169 575 atflplnKMRDERRDLSILSEDGVIGFAVDLVefdPKYEpafkyvfgdtlvVEDIEAARRLMG-KYRMVTLEGELFEKSG 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 596 KLIQTSDDSSqlkaelcSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTIT 675
Cdd:TIGR02169 654 AMTGGSRAPR-------GGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIE 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 676 VLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSS-----RDREISSLRRQLDASHTE 750
Cdd:TIGR02169 727 QLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDlearlSHSRIPEIQAELSKLEEE 806
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 751 IAE-TGRVKEIALKENRRLQdDLATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFR 829
Cdd:TIGR02169 807 VSRiEARLREIEQKLNRLTL-EKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLG 885
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 830 MLHTqaedwEIKAHQAEGESSSIRLELLSVDTDRrhLRERVELLEKEIqehmiahQAYESQISSItknmskleEDIKREH 909
Cdd:TIGR02169 886 DLKK-----ERDELEAQLRELERKIEELEAQIEK--KRKRLSELKAKL-------EALEEELSEI--------EDPKGED 943
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024501339 910 QDKSSVLADLTSVRELCVKLEASKDLLSRQLASKSMDYEKVLGELEDVKSEAELLKKQLSSERLTIQNLETL 981
Cdd:TIGR02169 944 EEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
520-981 |
1.09e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 65.83 E-value: 1.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 520 LADFRRLMAEKESLREKLKIQQEAANL----------EKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENE 589
Cdd:PRK02224 215 LAELDEEIERYEEQREQARETRDEADEvleeheerreELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 590 LKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLnqkstsqdeavnv 669
Cdd:PRK02224 295 RDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEEL------------- 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 670 lRSTITVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTI-----------THLRLTLSELESSTDQLKDL---LSSRDR 735
Cdd:PRK02224 362 -REEAAELESELEEAREAVEDRREEIEELEEEIEELRERFgdapvdlgnaeDFLEELREERDELREREAELeatLRTARE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 736 EISSLRRQLDASH-----TEIAETGRVKEIALKENRR--LQDDLATMTRENQAVSSELE------DAIREKEEMKTRVHN 802
Cdd:PRK02224 441 RVEEAEALLEAGKcpecgQPVEGSPHVETIEEDRERVeeLEAELEDLEEEVEEVEERLEraedlvEAEDRIERLEERRED 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 803 YITEVSRFESLIASKEKENQELLEKFRMLHTQAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKeIQEHMI 882
Cdd:PRK02224 521 LEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER-IRTLLA 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 883 AHQAYESQISSITKNMSKLEEdikREHQDKSSVLADLTSVRELCVKLEASKDLLSRQLASKSMDY-EKVLGELEDVKSEA 961
Cdd:PRK02224 600 AIADAEDEIERLREKREALAE---LNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYlEQVEEKLDELREER 676
|
490 500
....*....|....*....|
gi 2024501339 962 ELLKKQLSSERLTIQNLETL 981
Cdd:PRK02224 677 DDLQAEIGAVENELEELEEL 696
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
535-1049 |
1.74e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.46 E-value: 1.74e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 535 EKLKIQQEAAN----LEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAE 610
Cdd:TIGR02168 203 KSLERQAEKAErykeLKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEE 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 611 LCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDKEKDNLQETVDE 690
Cdd:TIGR02168 283 IEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 691 KTEKIACLD--------------DNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRR-----QLDASHTEI 751
Cdd:TIGR02168 363 LEAELEELEsrleeleeqletlrSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKkleeaELKELQAEL 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 752 AETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESL--IASKEKENQELLEKFR 829
Cdd:TIGR02168 443 EELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFseGVKALLKNQSGLSGIL 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 830 MLHTQ----AEDWE----------------------IKAHQAEGESSSIRLELLSVDTDR-RHLRERVELLEKEIQEHMI 882
Cdd:TIGR02168 523 GVLSElisvDEGYEaaieaalggrlqavvvenlnaaKKAIAFLKQNELGRVTFLPLDSIKgTEIQGNDREILKNIEGFLG 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 883 AHQAYESQISSITKNMSKL-------------EEDIKREHQDKSSVLADLTSVRE---------------LCVK-----L 929
Cdd:TIGR02168 603 VAKDLVKFDPKLRKALSYLlggvlvvddldnaLELAKKLRPGYRIVTLDGDLVRPggvitggsaktnssiLERRreieeL 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 930 EASKDLLSRQLASKSMDYEKVLGELEDVKSEAELLKKQLSSERLTIQNLETLLATSRDKEFQNHLTSHEKDSEIQLLKDK 1009
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE 762
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 2024501339 1010 LTLAEGKLSSHNREVSMLRSKVAQLQTDYDVLKRQLTTER 1049
Cdd:TIGR02168 763 IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
271-813 |
2.62e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 64.68 E-value: 2.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 271 ELCQELNEIDHLAQQLERHKEIVLETADkEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGK---- 346
Cdd:PRK02224 210 GLESELAELDEEIERYEEQREQARETRD-EADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLrerl 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 347 ---ADDKENLELLLNQLEQEKQRLTEKTENFEIKERELVLEIERMRLEYGIALGDKSPSRLDAfvKTLEDDRDYYKRELE 423
Cdd:PRK02224 289 eelEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDA--DDLEERAEELREEAA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 424 YLQKMIKRRPSPSRRSPEKSEDLrlitreRDELQSMLDRFEKhmieiqsnvklLTAERDRLNILYEQSQSELNRLRREAK 503
Cdd:PRK02224 367 ELESELEEAREAVEDRREEIEEL------EEEIEELRERFGD-----------APVDLGNAEDFLEELREERDELREREA 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 504 hnlvsqshvgeDGDASLADFRRLMAEKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERI 583
Cdd:PRK02224 430 -----------ELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERL 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 584 KSLEnelklksskliqtsdDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQ 663
Cdd:PRK02224 499 ERAE---------------DLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEA 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 664 DEAVNVLRSTITVLDKEKDNLQETVdEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQ 743
Cdd:PRK02224 564 EEEAEEAREEVAELNSKLAELKERI-ESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAE 642
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024501339 744 LDASHTEIAETGRVKEIALKENrrLQDDLATMTRENQAVSSE---LEDAIREKEEMKTRVHNYITEVSRFESL 813
Cdd:PRK02224 643 FDEARIEEAREDKERAEEYLEQ--VEEKLDELREERDDLQAEigaVENELEELEELRERREALENRVEALEAL 713
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
301-689 |
1.36e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 1.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 301 IGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLELLLNQLEQEKQRLTEKTENFEikERE 380
Cdd:TIGR02168 672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE--ERI 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 381 LVLEIERMRLEYGIALGDKSPSRLDAFVKTLEDDRDYYKRELEYLQkmikrrpspsrrspeksEDLRLITRERDELQSML 460
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK-----------------EELKALREALDELRAEL 812
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 461 DRFEKHMIEIQSNVKLLTAERDRLnilyEQSQSELNRLRREAKHNLVSQSHVGEDGDASLADFRRLMAEKESLREKLKIQ 540
Cdd:TIGR02168 813 TLLNEEAANLRERLESLERRIAAT----ERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEA 888
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 541 QEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLiqtSDDSSQLKAELCSLHLLNEQ 620
Cdd:TIGR02168 889 LALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL---SEEYSLTLEEAEALENKIED 965
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024501339 621 LQRTVEDLQHRLSLKKDEL----QSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDKE-KDNLQETVD 689
Cdd:TIGR02168 966 DEEEARRRLKRLENKIKELgpvnLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREaRERFKDTFD 1039
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
232-735 |
1.66e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 62.00 E-value: 1.66e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 232 KQVEYLQQSNKELENRIQDLLDTKKNVTSEVVHLSNKNEELCQELNEIDHLAQQLERHKEIvLETADKEIGEAKKEIERK 311
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEE-IEELEKELESLEGSKRKL 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 312 DSEIQDLEETITRLKSELSSCRRQNERLsEELFGKADDKENLELLLNQLEQEKQRLTEKTENFEIKERELVLEIERM--- 388
Cdd:PRK03918 258 EEKIRELEERIEELKKEIEELEEKVKEL-KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELeek 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 389 -----RLEYGIALGDKSPSRLDAFVKTLED--------DRDYYKRELEYLQKMIKRRPSPSRRSPEKSEDLRLITRERDE 455
Cdd:PRK03918 337 eerleELKKKLKELEKRLEELEERHELYEEakakkeelERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGE 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 456 LQSMLDRFEKHMIEIQSN------VKLLTAERDRLNILYEQSqSELNRLRREAKhnlvSQSHVGEDGDASLADFRRLMAE 529
Cdd:PRK03918 417 LKKEIKELKKAIEELKKAkgkcpvCGRELTEEHRKELLEEYT-AELKRIEKELK----EIEEKERKLRKELRELEKVLKK 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 530 KESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFEL---ERCELKSTISILKERIKSLEnELKLKSSKLIQTSDDSSQ 606
Cdd:PRK03918 492 ESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKlkeKLIKLKGEIKSLKKELEKLE-ELKKKLAELEKKLDELEE 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 607 LKAELcsLHLLNEQLQRTVEDLQHRL-----------SLK--KDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRST 673
Cdd:PRK03918 571 ELAEL--LKELEELGFESVEELEERLkelepfyneylELKdaEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKE 648
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024501339 674 ITVLDKEKDnlQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDR 735
Cdd:PRK03918 649 LEELEKKYS--EEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREK 708
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
274-879 |
2.99e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 2.99e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 274 QELNEIDHLAQQLE-RHKEIVLETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKEN 352
Cdd:COG1196 220 EELKELEAELLLLKlRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 353 LELLLNQLEQEKQRLTEKTENFEIKERELVLEIERMRLEygialgdkspsrldafVKTLEDDRDYYKRELEYLQKMIKRR 432
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEE----------------LEELEEELEEAEEELEEAEAELAEA 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 433 PSPSRRSPEKSEDLRlitRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAKHNLVSQSHV 512
Cdd:COG1196 364 EEALLEAEAELAEAE---EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 513 GEDGDASLADFRRLMAEKESLREKLKIQQEAANLekskmqhdisvLENNIQQFELERCELKSTISILKERIKSLENELK- 591
Cdd:COG1196 441 EEALEEAAEEEAELEEEEEALLELLAELLEEAAL-----------LEAALAELLEELAEAAARLLLLLEAEADYEGFLEg 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 592 LKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLR 671
Cdd:COG1196 510 VKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALA 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 672 STITVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQldashtEI 751
Cdd:COG1196 590 AALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGS------LT 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 752 AETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRvhnyitevsrfesLIASKEKENQELLEKFRML 831
Cdd:COG1196 664 GGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAE-------------AEEERLEEELEEEALEEQL 730
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 2024501339 832 HTQAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQE 879
Cdd:COG1196 731 EAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
283-907 |
4.20e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.72 E-value: 4.20e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 283 AQQLERHKEIVLETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELfgkaddkenlelllnqlEQ 362
Cdd:COG1196 209 AEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAEL-----------------EE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 363 EKQRLTEKTENFEIK-ERELVLEIERMRLEYGIALgdkspsrldafvktLEDDRDYYKRELEYLQKmikrrpspsrRSPE 441
Cdd:COG1196 272 LRLELEELELELEEAqAEEYELLAELARLEQDIAR--------------LEERRRELEERLEELEE----------ELAE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 442 KSEDLRLITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREakhnlvsqshvgedgdasLA 521
Cdd:COG1196 328 LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE------------------LL 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 522 DFRRLMAEKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKlksskliQTS 601
Cdd:COG1196 390 EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE-------ALL 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 602 DDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQ--EEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDK 679
Cdd:COG1196 463 ELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEgfLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEA 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 680 EKDNLQETVDEKTEKIA--CLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRD--REISSLRRQLDASHTEIAETG 755
Cdd:COG1196 543 ALAAALQNIVVEDDEVAaaAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAavDLVASDLREADARYYVLGDTL 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 756 RVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRVhnyITEVSRFESLIASKEKENQELLEKFRMLHTQA 835
Cdd:COG1196 623 LGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSR---RELLAALLEAEAELEELAERLAEEELELEEAL 699
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024501339 836 EDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQEHMIAHQAYESQISSITKNMSKLEEDIKR 907
Cdd:COG1196 700 LAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELER 771
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
101-656 |
1.63e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.79 E-value: 1.63e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 101 KDLKASLRRAENEAadlrflnnqYVHKIKLLEKESKAKTEKIQQLQEKNLQAVVQTpggRKRNIPFRRQRMQIDQpvpps 180
Cdd:COG1196 216 RELKEELKELEAEL---------LLLKLRELEAELEELEAELEELEAELEELEAEL---AELEAELEELRLELEE----- 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 181 avsaypvpqpedpyIADLLQVADNRIQELQSEVTQLQEKLEISENGKKNYSKQVEYLQQSNKELENRIQDLLDTKKNVTS 260
Cdd:COG1196 279 --------------LELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 261 EVVHLSNKNEELCQELNEIDHLAQQLER---HKEIVLETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNE 337
Cdd:COG1196 345 ELEEAEEELEEAEAELAEAEEALLEAEAelaEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELE 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 338 RLSEELFGKADDKENLELLLNQLEQEKQRLTEKTENFEIKERELVLEIERMRLEYGIALGDKSPSR-LDAFVKTLEDDRD 416
Cdd:COG1196 425 ELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAaRLLLLLEAEADYE 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 417 YYKRELEYLQKMIKRRPSPSRRSPEKSEDLRLITRERDELQSML-------DRFEKHMIEIQSNVKLLTAERDRLNILYE 489
Cdd:COG1196 505 GFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALqnivvedDEVAAAAIEYLKAAKAGRATFLPLDKIRA 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 490 QSQSELNRLR----------------REAKHNLVSQSHVGEDGDASLADFRRLMAEKESLREKLK------IQQEAANLE 547
Cdd:COG1196 585 RAALAAALARgaigaavdlvasdlreADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVtlegegGSAGGSLTG 664
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 548 KSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVED 627
Cdd:COG1196 665 GSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEE 744
|
570 580 590
....*....|....*....|....*....|....*
gi 2024501339 628 LQHRLSLKKDE------LQSAQEEIVKLEEKIDRL 656
Cdd:COG1196 745 EELLEEEALEElpeppdLEELERELERLEREIEAL 779
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
734-1055 |
2.26e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.54 E-value: 2.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 734 DREISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTR-----------ENQAVSSELEDAIREKEEMKTRVHN 802
Cdd:TIGR02169 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERyqallkekreyEGYELLKEKEALERQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 803 YITEVSRFESLIASKEKENQELLEKFRMLHTQAEDweikahQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQEHMI 882
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKD------LGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 883 AHQAYESQISSITKNMSKLEEDIKREHQDKSSV---LADLTSVRELCVKLEASKDLLSRQLASKSMDYEKvlgELEDVKS 959
Cdd:TIGR02169 323 RLAKLEAEIDKLLAEIEELEREIEEERKRRDKLteeYAELKEELEDLRAELEEVDKEFAETRDELKDYRE---KLEKLKR 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 960 EAELLKKQLSSERLTIQNLETLLATSRDKEFQNHLTSHEKDSEIQLLKDKLTLAEGKLSSHNREVSMLRSKVAQLQTDYD 1039
Cdd:TIGR02169 400 EINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD 479
|
330
....*....|....*.
gi 2024501339 1040 VLKRQLTTERFERERA 1055
Cdd:TIGR02169 480 RVEKELSKLQRELAEA 495
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
418-800 |
3.11e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.16 E-value: 3.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 418 YKRELEYLQKMIKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNR 497
Cdd:TIGR02169 669 SRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSS 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 498 LRREAkhnlvsqshvgEDGDASLADFRRLMAEKEslREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTIS 577
Cdd:TIGR02169 749 LEQEI-----------ENVKSELKELEARIEELE--EDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLR 815
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 578 ILKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLN 657
Cdd:TIGR02169 816 EIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELE 895
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 658 QKSTSQDEAVNVLRSTITVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTithlrltlSELESSTDQLKDLLSSRDREI 737
Cdd:TIGR02169 896 AQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEI--------PEEELSLEDVQAELQRVEEEI 967
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024501339 738 SSLRrqlDASHTEIAETgrvkEIALKENRRLQDDLATMTREnqavSSELEDAIREKEEMKTRV 800
Cdd:TIGR02169 968 RALE---PVNMLAIQEY----EEVLKRLDELKEKRAKLEEE----RKAILERIEEYEKKKREV 1019
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
533-1062 |
3.76e-08 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 57.81 E-value: 3.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 533 LREKLKIQQEAANLEKSKMQHDISVLEN---NIQQFELERCELKSTISILKERIKSL--ENELKLKSSKLIQTSDD--SS 605
Cdd:pfam05483 273 LEEKTKLQDENLKELIEKKDHLTKELEDikmSLQRSMSTQKALEEDLQIATKTICQLteEKEAQMEELNKAKAAHSfvVT 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 606 QLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEivkLEEKIDRLNQKSTSQDEAVNVLRSTITVLDkEKDNLQ 685
Cdd:pfam05483 353 EFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSE---LEEMTKFKNNKEVELEELKKILAEDEKLLD-EKKQFE 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 686 ETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKdllssrdREISSLRRQLDASHTEIAETGRVKEIALKEN 765
Cdd:pfam05483 429 KIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYL-------KEVEDLKTELEKEKLKNIELTAHCDKLLLEN 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 766 RRLQDDLATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIaskEKENQELLEKFRMLHTQAEDWEIKAHQA 845
Cdd:pfam05483 502 KELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDEL---ESVREEFIQKGDEVKCKLDKSEENARSI 578
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 846 EGESSSIRLELLSVDTDRRHLRERVELLEKEIQEHMIAHQAYESQISSITKNMSKLEEDIKRehqdkssVLADLTSVREl 925
Cdd:pfam05483 579 EYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNK-------LELELASAKQ- 650
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 926 cvKLEASKDLLSRQLASKSMDYEKVLGELEDVKSEA-ELLKKQLSSERLTIQNLETLLATSRDKEFQNHLTSHEKDSEIQ 1004
Cdd:pfam05483 651 --KFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIAdEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELG 728
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 2024501339 1005 LLKDKLTLAEGKLSSHNREVSMLRSKVAQLqtdydvlKRQLTTERFERERAIQEMRRH 1062
Cdd:pfam05483 729 LYKNKEQEQSSAKAALEIELSNIKAELLSL-------KKQLEIEKEEKEKLKMEAKEN 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
199-799 |
4.76e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.64 E-value: 4.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 199 LQVADNRIQELQSEVTQLQEKLEISENGKKNYSKQVEYLQQSNKELENRIQDLLDTKKNVTSEVVHLSNKNEELCQELNE 278
Cdd:COG1196 269 LEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEE 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 279 IdhlaqqlerhkEIVLETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLELLLN 358
Cdd:COG1196 349 A-----------EEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLE 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 359 QLEQEKQRLTEKTENFEIKERELVLEIERMRLEYgialgdkspSRLDAFVKTLEDDRDYYKRELEYLQKmiKRRPSPSRR 438
Cdd:COG1196 418 RLEEELEELEEALAELEEEEEEEEEALEEAAEEE---------AELEEEEEALLELLAELLEEAALLEA--ALAELLEEL 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 439 SPEKSEDLRLITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEqsQSELNRLRREAKHNLVSQSHVGEDGDA 518
Cdd:COG1196 487 AEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYE--AALEAALAAALQNIVVEDDEVAAAAIE 564
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 519 SLADFRRLMAEKESLReklkiQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLI 598
Cdd:COG1196 565 YLKAAKAGRATFLPLD-----KIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRA 639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 599 QTsddssqLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLD 678
Cdd:COG1196 640 VT------LAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAE 713
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 679 KEKDNLQETVDEKTEKiaclddnlanKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDASHTEIAETGRVK 758
Cdd:COG1196 714 EERLEEELEEEALEEQ----------LEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGPVN 783
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 2024501339 759 EIALKENRRLQDDLATMTRENQAVSSE---LEDAIRE-KEEMKTR 799
Cdd:COG1196 784 LLAIEEYEELEERYDFLSEQREDLEEAretLEEAIEEiDRETRER 828
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
817-1072 |
5.23e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.25 E-value: 5.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 817 KEKENQELLEKFRMLHTQAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQEhmiAHQAYESQISSItk 896
Cdd:COG1196 223 KELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEE---AQAEEYELLAEL-- 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 897 nmSKLEEDIKREHQDKSSVLADLTSVRELCVKLEASKDLLSRQLASKSMDYEKVLGELEDVKSEAELLKKQLSSERLTIQ 976
Cdd:COG1196 298 --ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 977 NLETLLATSRDKEFQNHLTSHEKDSEIQLLKDKLTLAEGKLSSHNREVSMLRSKVAQLQTDYDVLKRQLTTERFERERAI 1056
Cdd:COG1196 376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
250
....*....|....*.
gi 2024501339 1057 QEMRRHGLSTSSLRAS 1072
Cdd:COG1196 456 EEEEALLELLAELLEE 471
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
202-426 |
1.23e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.08 E-value: 1.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 202 ADNRIQELQSEVTQLQEKLEISENGKKNYSKQVEYLQQSnKELENRIQDLLDTKKNVTSEVVHLSNKNEELcQEL----N 277
Cdd:COG4913 608 NRAKLAALEAELAELEEELAEAEERLEALEAELDALQER-REALQRLAEYSWDEIDVASAEREIAELEAEL-ERLdassD 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 278 EIDHLAQQLERHKEIvLETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRR-----QNERLsEELFGKADDKEN 352
Cdd:COG4913 686 DLAALEEQLEELEAE-LEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDlarleLRALL-EERFAAALGDAV 763
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024501339 353 LELLLNQLEQEKQRLTEKTENfeiKERELVLEIERMRLEYGIALGDkspsrLDAFVktleDDRDYYKRELEYLQ 426
Cdd:COG4913 764 ERELRENLEERIDALRARLNR---AEEELERAMRAFNREWPAETAD-----LDADL----ESLPEYLALLDRLE 825
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
187-987 |
3.79e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 54.74 E-value: 3.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 187 VPQPEDPYIADLLQVADNRIQELQSevtQLQEKLEISEngkknysKQVEYLQQSNKELENRIQDLLDTKKNVTSEVVHLS 266
Cdd:pfam15921 68 IAYPGKEHIERVLEEYSHQVKDLQR---RLNESNELHE-------KQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRES 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 267 NKNEELCQELNEIDHLAQQLERHKEIVLETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELF-- 344
Cdd:pfam15921 138 QSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFrs 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 345 -GKADDKENLELLLNQLEQeKQRLTEKTENFEI------KERELVLEIERMRLEYGIALGDKSPSRLDAFVKTLEDDRDY 417
Cdd:pfam15921 218 lGSAISKILRELDTEISYL-KGRIFPVEDQLEAlksesqNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANS 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 418 YKRELEYLQKMIKRRPSPSRRSPEKSED----LRLITRERDEL-QSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQ 492
Cdd:pfam15921 297 IQSQLEIIQEQARNQNSMYMRQLSDLEStvsqLRSELREAKRMyEDKIEELEKQLVLANSELTEARTERDQFSQESGNLD 376
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 493 SELNRLRREAkHNLVSQSHVGEDGDASLADfrRLMAEKESLrEKLKIQQEAANLEKSKMQHDISVLENNIQQfelercEL 572
Cdd:pfam15921 377 DQLQKLLADL-HKREKELSLEKEQNKRLWD--RDTGNSITI-DHLRRELDDRNMEVQRLEALLKAMKSECQG------QM 446
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 573 KSTISILKERIKSLENELKLkSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEK 652
Cdd:pfam15921 447 ERQMAAIQGKNESLEKVSSL-TAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSR 525
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 653 ID----RLNQKSTSQDEAVNVLRS-------------TITVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLT 715
Cdd:pfam15921 526 VDlklqELQHLKNEGDHLRNVQTEcealklqmaekdkVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLE 605
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 716 LSELESstdqLKDLLSSRDREISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATmtrENQAVSSELEDAIREKEE 795
Cdd:pfam15921 606 LQEFKI----LKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLN---EVKTSRNELNSLSEDYEV 678
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 796 MKTRVHNyitevsrfesliasKEKENQELLEKFRMlhtqaedwEIKAHQAEGESSsiRLELLSVDTDRRHLRERVELLEK 875
Cdd:pfam15921 679 LKRNFRN--------------KSEEMETTTNKLKM--------QLKSAQSELEQT--RNTLKSMEGSDGHAMKVAMGMQK 734
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 876 EIqehmiahQAYESQISSITKNMSKLEEDIKREHQDKSSvladltsvrelcvkLEASKDLLSRQLASKSMDYEKVLGELE 955
Cdd:pfam15921 735 QI-------TAKRGQIDALQSKIQFLEEAMTNANKEKHF--------------LKEEKNKLSQELSTVATEKNKMAGELE 793
|
810 820 830
....*....|....*....|....*....|..
gi 2024501339 956 DVKSEAELLKKQLSSERLTIQNLETLLATSRD 987
Cdd:pfam15921 794 VLRSQERRLKEKVANMEVALDKASLQFAECQD 825
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
619-827 |
8.76e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.46 E-value: 8.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 619 EQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDKEKDNLQETVDEKTEKIACL 698
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 699 DDNLAN------KEKTITHLRLTLS-----ELESSTDQLKDLLSSRDREISSLRRQ---LDASHTEIAETGRVKEIALKE 764
Cdd:COG4942 103 KEELAEllralyRLGRQPPLALLLSpedflDAVRRLQYLKYLAPARREQAEELRADlaeLAALRAELEAERAELEALLAE 182
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024501339 765 NRRLQDDLATMTRENQAVSSELEdaiREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEK 827
Cdd:COG4942 183 LEEERAALEALKAERQKLLARLE---KELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
196-777 |
9.54e-07 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 52.98 E-value: 9.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 196 ADLLQVADNRIQELQSEVTQLQEKLEISENGKKNYSKQVEylqqsnkELENRIQDLLDTKKNVTSEVVHLSNKNEELCQE 275
Cdd:PRK01156 168 YDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIA-------DDEKSHSITLKEIERLSIEYNNAMDDYNNLKSA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 276 LNEIDHLAQQLERHKEIVletadKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLEL 355
Cdd:PRK01156 241 LNELSSLEDMKNRYESEI-----KTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILS 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 356 LLNQLEQEKQRLTEKTENFEIKERELVLEIERMRleygialgDKSPSRLDafVKTLEDDRDYYKRELEYLQKMIKR-RPS 434
Cdd:PRK01156 316 NIDAEINKYHAIIKKLSVLQKDYNDYIKKKSRYD--------DLNNQILE--LEGYEMDYNSYLKSIESLKKKIEEySKN 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 435 PSRRSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAKHNlVSQSHVGE 514
Cdd:PRK01156 386 IERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCP-VCGTTLGE 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 515 DGDASLadfrrlmaekeslreklkiqQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISIL-KERIKSLENELKLK 593
Cdd:PRK01156 465 EKSNHI--------------------INHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLeSEEINKSINEYNKI 524
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 594 SSKLIQTSDD-------------SSQLKAELCSLHLLNEQLQRT--VEDLQHRLSLKKDELQSAQEEIVK-LEEKIDRLN 657
Cdd:PRK01156 525 ESARADLEDIkikinelkdkhdkYEEIKNRYKSLKLEDLDSKRTswLNALAVISLIDIETNRSRSNEIKKqLNDLESRLQ 604
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 658 QKSTSQDEAVNVLRSTITVLDKEKDNLQETVDEKTEKIACLDDnlanKEKTITHLRLTLSELESSTDQLKDL---LSSRD 734
Cdd:PRK01156 605 EIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEK----LRGKIDNYKKQIAEIDSIIPDLKEItsrINDIE 680
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 2024501339 735 REISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTR 777
Cdd:PRK01156 681 DNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINE 723
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
409-969 |
1.16e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.76 E-value: 1.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 409 KTLEDDRDYYKRELEYLQKMIKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILY 488
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 489 EQSQSELNRLR---------REAKHNLVSQSHVGEDGDASLADFRRLMAEKESLRE-KLKIQQEAANLEK--SKMQHDIS 556
Cdd:PRK03918 245 KELESLEGSKRkleekirelEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEfYEEYLDELREIEKrlSRLEEEIN 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 557 VLENNIQQFElercELKSTISILKERIKSLENELKlKSSKLIQTSDDSSQLKAELCSLHllNEQLQRTVEDLQHRLSLKK 636
Cdd:PRK03918 325 GIEERIKELE----EKEERLEELKKKLKELEKRLE-ELEERHELYEEAKAKKEELERLK--KRLTGLTPEKLEKELEELE 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 637 DELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDKEKDNLQEtvDEKTEKIACLDDNLANKEKTITHLRLTL 716
Cdd:PRK03918 398 KAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTE--EHRKELLEEYTAELKRIEKELKEIEEKE 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 717 SELESSTDQLKDLLsSRDREISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEM 796
Cdd:PRK03918 476 RKLRKELRELEKVL-KKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEEL 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 797 KTRVHNYITEVSRFESLIASKEKENQEL-LEKFRMLHTQAEDWEiKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEK 875
Cdd:PRK03918 555 KKKLAELEKKLDELEEELAELLKELEELgFESVEELEERLKELE-PFYNEYLELKDAEKELEREEKELKKLEEELDKAFE 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 876 EIQEHMIAHQAYESQISSITKNMSKLE-EDIKREHQDKSSVLADLTSvrelcvKLEASKDLLsRQLASKSMDYEKVLGEL 954
Cdd:PRK03918 634 ELAETEKRLEELRKELEELEKKYSEEEyEELREEYLELSRELAGLRA------ELEELEKRR-EEIKKTLEKLKEELEER 706
|
570
....*....|....*
gi 2024501339 955 EDVKSEAELLKKQLS 969
Cdd:PRK03918 707 EKAKKELEKLEKALE 721
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
529-1053 |
1.78e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 52.33 E-value: 1.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 529 EKESLREKLKIQQEAANLEKskmqhDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLK 608
Cdd:TIGR04523 35 EKQLEKKLKTIKNELKNKEK-----ELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKIN 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 609 AELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDKEKDNLQETV 688
Cdd:TIGR04523 110 SEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNI 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 689 DEKTEKIACLDDNLAN---KEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDASHTEIAETgrvKEIALKEN 765
Cdd:TIGR04523 190 DKIKNKLLKLELLLSNlkkKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQL---KDEQNKIK 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 766 RRLQDDLATMTREN----------QAVSSELEDAIREKEEMKTR-VHNYITEVSRFESLIASKEKENQELLEKfrmLHTQ 834
Cdd:TIGR04523 267 KQLSEKQKELEQNNkkikelekqlNQLKSEISDLNNQKEQDWNKeLKSELKNQEKKLEEIQNQISQNNKIISQ---LNEQ 343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 835 AEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQEHMIAHQAYESQISSITKNMSKLEEDIKREHQDKSS 914
Cdd:TIGR04523 344 ISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKEL 423
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 915 VLADLTSVRELCVKLEASKDLLSRQLASKSMDYEKVLGELEDVKSEAELLKKQLSSERLTIQNLETLLaTSRDKEFqNHL 994
Cdd:TIGR04523 424 LEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKEL-KSKEKEL-KKL 501
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2024501339 995 TSHEKDSE--IQLLKDKLTLAEGKLSSHNREVSMLRSKVAQLQTDYDVLKRQLTTERFERE 1053
Cdd:TIGR04523 502 NEEKKELEekVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKE 562
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
587-792 |
2.14e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 51.37 E-value: 2.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 587 ENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQK------- 659
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREElgerara 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 660 ----------------STSQDEAVNVLRSTITVLDKEKDNLQETVDEKTEkiacLDDNLANKEKTITHLRLTLSELESST 723
Cdd:COG3883 95 lyrsggsvsyldvllgSESFSDFLDRLSALSKIADADADLLEELKADKAE----LEAKKAELEAKLAELEALKAELEAAK 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2024501339 724 DQLKDLLSSRDREISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIRE 792
Cdd:COG3883 171 AELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 239
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
632-827 |
2.17e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 51.37 E-value: 2.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 632 LSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDKEKDNLQETVDEKTEKIACLDDNLANkektitH 711
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGE------R 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 712 LRlTLSELESSTDQLKDLLSSRD-----REISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSEL 786
Cdd:COG3883 92 AR-ALYRSGGSVSYLDVLLGSESfsdflDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAK 170
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2024501339 787 EDAIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEK 827
Cdd:COG3883 171 AELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
247-795 |
2.24e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.86 E-value: 2.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 247 RIQDLLDTKKNVTSEVVHLSNKNEELCQELNEIDHLAQQLERHkeivLETADKEIGEAKKEIERKDSEIQDLEETITRLK 326
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLE----LEELELELEEAQAEEYELLAELARLEQDIARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 327 SELSSCRRQNERLSEELfgkADDKENLELLLNQLEQEKQRLTEKTENFEIKERELvLEIERMRLEygialgdkspsRLDA 406
Cdd:COG1196 309 ERRRELEERLEELEEEL---AELEEELEELEEELEELEEELEEAEEELEEAEAEL-AEAEEALLE-----------AEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 407 FVKTLEDDRDYYKRELEYLQKMIKRRPSPSRRSPEKSEDLRLITRERDELQsmldrfekhmiEIQSNVKLLTAERDRLNI 486
Cdd:COG1196 374 LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELE-----------ELEEALAELEEEEEEEEE 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 487 LYEQSQSELNRLRREAKHNLVSQSHVGEDGDASLADFRRLMAEKESLREKLKIQQEAANLEKSKMQhDISVLENNIQQFE 566
Cdd:COG1196 443 ALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE-GVKAALLLAGLRG 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 567 LERcelksTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRtvEDLQHRLSLKKDELQSAQEEI 646
Cdd:COG1196 522 LAG-----AVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGR--ATFLPLDKIRARAALAAALAR 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 647 VKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDKEKDNLqetvDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQL 726
Cdd:COG1196 595 GAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARL----EAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRREL 670
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2024501339 727 KDLLSSRDREISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEE 795
Cdd:COG1196 671 LAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLE 739
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
619-938 |
3.40e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 3.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 619 EQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKstsQDEAVNVLRSTITVLDKEKDNLQETVDEKTEKIACL 698
Cdd:TIGR02169 180 EEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEK---REYEGYELLKEKEALERQKEAIERQLASLEEELEKL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 699 DDNLANKEKTITHLRLTLSELESSTDQLKDllssrdREISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRE 778
Cdd:TIGR02169 257 TEEISELEKRLEEIEQLLEELNKKIKDLGE------EEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAE 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 779 NQAVSSELEDAIREKEEMKTRVHNYITEVSRFE-------SLIASKEKENQELLEKFRMLHTQAEDWEIKAHQAEGESSS 851
Cdd:TIGR02169 331 IDKLLAEIEELEREIEEERKRRDKLTEEYAELKeeledlrAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDR 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 852 IRLELLSVDTDRRHLRERVELLE---KEIQEHMIAHQ----AYESQISSITKNMSKLEEDIKREHQDKSSVLADLTSVRE 924
Cdd:TIGR02169 411 LQEELQRLSEELADLNAAIAGIEakiNELEEEKEDKAleikKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490
|
330
....*....|....
gi 2024501339 925 LCVKLEASKDLLSR 938
Cdd:TIGR02169 491 ELAEAEAQARASEE 504
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
543-756 |
4.65e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 4.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 543 AANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQ 622
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 623 RTVEDLQHRLSLKKDELQS-----------AQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDKEKDNLQETVDEK 691
Cdd:COG4942 97 AELEAQKEELAELLRALYRlgrqpplalllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024501339 692 TEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDASHTEIAETGR 756
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
194-760 |
4.71e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 51.06 E-value: 4.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 194 YIADLLQVADNRIQELQSEVTQLQEKLEISENGKKNYSkqVEYLQQSN-----KELENRIQDLLDTKKNVTSEVVHLSNK 268
Cdd:PRK01156 187 YLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLS--IEYNNAMDdynnlKSALNELSSLEDMKNRYESEIKTAESD 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 269 NEELCQELNEIDHLAqqlERHKEIVLETA-------------DKEIGEAKKEIERKDSEIQDLEETITRLkSELSSCRRQ 335
Cdd:PRK01156 265 LSMELEKNNYYKELE---ERHMKIINDPVyknrnyindyfkyKNDIENKKQILSNIDAEINKYHAIIKKL-SVLQKDYND 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 336 NERLSEELfgkaDDKENLELLLNQLEQEKQRLTEKTENFEIKERELVLEIERMRLEYGIALGDK--SPSRLDAFVKTLED 413
Cdd:PRK01156 341 YIKKKSRY----DDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQeiDPDAIKKELNEINV 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 414 DRDYYKRELEYLQKMIKRRPSPSRRSPEKSEDLRL--------ITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLN 485
Cdd:PRK01156 417 KLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGqsvcpvcgTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDID 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 486 ILYEQSQSELNRLRREAKHNLVSQSHVGEDGDASLADFRRLMAEkesLREKLKIQQEAANLEKSKmqhDISVLENNIQQF 565
Cdd:PRK01156 497 EKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKINE---LKDKHDKYEEIKNRYKSL---KLEDLDSKRTSW 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 566 eLERCELKSTISIlkERIKSLENElklKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEE 645
Cdd:PRK01156 571 -LNALAVISLIDI--ETNRSRSNE---IKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKIL 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 646 IVKLEEKIDRLNQKSTsqdeavnvlrstitvldkEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQ 725
Cdd:PRK01156 645 IEKLRGKIDNYKKQIA------------------EIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEI 706
|
570 580 590
....*....|....*....|....*....|....*
gi 2024501339 726 LKDLLSSRDREISSLRRQLDASHTEIAETGRVKEI 760
Cdd:PRK01156 707 LRTRINELSDRINDINETLESMKKIKKAIGDLKRL 741
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
520-979 |
6.33e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 50.56 E-value: 6.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 520 LADFRRLMAEKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELER-------CELKSTISILKERIKSLeNELKL 592
Cdd:pfam01576 105 IQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERklleeriSEFTSNLAEEEEKAKSL-SKLKN 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 593 KSSKLIQTSDD---------------SSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVK-------LE 650
Cdd:pfam01576 184 KHEAMISDLEErlkkeekgrqelekaKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEetaqknnAL 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 651 EKIDRLNQKSTSQDEAVNVLRSTITVLDKEKDNLQETVDE-KTEKIACLDDNLAN------KEKTITHLRLTLSELESST 723
Cdd:pfam01576 264 KKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEAlKTELEDTLDTTAAQqelrskREQEVTELKKALEEETRSH 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 724 D-QLKDLLSSRDREISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTREN--------------QAVSSELED 788
Cdd:pfam01576 344 EaQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKqdsehkrkklegqlQELQARLSE 423
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 789 AIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHTQAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRE 868
Cdd:pfam01576 424 SERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQE 503
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 869 RVEllekeiqEHMIAHQAYESQISSITKNMSkleeDIKREHQDKSSVLADLTSVRElcvKLEASKDLLSRQLASKSMDYE 948
Cdd:pfam01576 504 QLE-------EEEEAKRNVERQLSTLQAQLS----DMKKKLEEDAGTLEALEEGKK---RLQRELEALTQQLEEKAAAYD 569
|
490 500 510
....*....|....*....|....*....|.
gi 2024501339 949 KVLGELEDVKSEAELLKKQLSSERLTIQNLE 979
Cdd:pfam01576 570 KLEKTKNRLQQELDDLLVDLDHQRQLVSNLE 600
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
579-785 |
8.49e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 8.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 579 LKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLN- 657
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKe 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 658 ---------QKSTSQDEAVNVLRST--------ITVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELE 720
Cdd:COG4942 105 elaellralYRLGRQPPLALLLSPEdfldavrrLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELE 184
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024501339 721 SSTDQLKDLLSSRDREISSLRRQLDASHTEIAEtgrvkeiALKENRRLQDDLATMTRENQAVSSE 785
Cdd:COG4942 185 EERAALEALKAERQKLLARLEKELAELAAELAE-------LQQEAEELEALIARLEAEAAAAAER 242
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
716-987 |
9.91e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 49.65 E-value: 9.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 716 LSELESSTDQLKDLLSsrDREISSLRRQLDASHTEIAETGrvKEIALKENRRLQddlATMTREnqavssELEDAIREKEE 795
Cdd:PRK02224 182 LSDQRGSLDQLKAQIE--EKEEKDLHERLNGLESELAELD--EEIERYEEQREQ---ARETRD------EADEVLEEHEE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 796 MKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHTQAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEK 875
Cdd:PRK02224 249 RREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRD 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 876 EIQEHMIAHQAYESQISSITKNMSKLEEDIKREHQDKSSVLADLTSVRELCVKLEASKDLLSRQLASKSMDYEKVLGELE 955
Cdd:PRK02224 329 RLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLG 408
|
250 260 270
....*....|....*....|....*....|..
gi 2024501339 956 DVKSEAELLKKQLSSERLTIQNLETLLATSRD 987
Cdd:PRK02224 409 NAEDFLEELREERDELREREAELEATLRTARE 440
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
703-1062 |
1.19e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.67 E-value: 1.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 703 ANKEKTITHLRLTLSELesstDQLKDLLSSRDREISSLRRQldashTEIAEtgrvKEIALKENRRlQDDLATMTRENQAV 782
Cdd:TIGR02168 172 ERRKETERKLERTRENL----DRLEDILNELERQLKSLERQ-----AEKAE----RYKELKAELR-ELELALLVLRLEEL 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 783 SSELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFrmlhtqaedweikaHQAEGESSSIRLELLSVDTD 862
Cdd:TIGR02168 238 REELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEI--------------EELQKELYALANEISRLEQQ 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 863 RRHLRERVELLEKEIQEHMIAHQAYESQISSITKNMSKLEEDIKREHQDKSSVLADLTSVRELCVKLEASKDLLSRQLAS 942
Cdd:TIGR02168 304 KQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLET 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 943 KSMDYEKVLGELEDVKSEAELLKKQLSSERLTIQNLETLLATSRDKEFQNHLtsHEKDSEIQLLKDKLTLAEGKLSSHNR 1022
Cdd:TIGR02168 384 LRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAEL--KELQAELEELEEELEELQEELERLEE 461
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 2024501339 1023 EVSMLRSKVAQLQTDYDVLKRQLTTERFeRERAIQEMRRH 1062
Cdd:TIGR02168 462 ALEELREELEEAEQALDAAERELAQLQA-RLDSLERLQEN 500
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
228-1061 |
1.65e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 49.27 E-value: 1.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 228 KNYSKQVEYLQQSNKELENRIQDLLDTKKNVTSEVVHLSNKNEELCQ----ELNEIDHLAQQLERHKEivletadKEIGE 303
Cdd:TIGR00606 251 KNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQgtdeQLNDLYHNHQRTVREKE-------RELVD 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 304 AKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLELLLNQLEQEKQRLTEKtenfEIKErelVL 383
Cdd:TIGR00606 324 CQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSER----QIKN---FH 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 384 EIERMRLEYGIALGDKSPSRLDAFVKTLEDDRDYYKRELEYLQKMIKRRPSPSRrspEKSEDLRLITRERDELQSMLDRf 463
Cdd:TIGR00606 397 TLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILE---KKQEELKFVIKELQQLEGSSDR- 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 464 ekhmieiqsnvkLLTAERDRLNILYEQSQSELNRLRREAKHNLVSQSHVGEDGDASLADFRRLMAEKESLREKLKiqqEA 543
Cdd:TIGR00606 473 ------------ILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRT---QM 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 544 ANLEKSKMQHDISVLENNIQQFElercELKSTISILKERiKSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQR 623
Cdd:TIGR00606 538 EMLTKDKMDKDEQIRKIKSRHSD----ELTSLLGYFPNK-KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINN 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 624 TVEDLQHRLSLKKDEL------QSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDKEKDNLQETVDEKTekiac 697
Cdd:TIGR00606 613 ELESKEEQLSSYEDKLfdvcgsQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVF----- 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 698 lddnlankeKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTR 777
Cdd:TIGR00606 688 ---------QTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNR 758
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 778 ENQAVSSELED------AIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKfrmlhTQAEDWEIKAHQaegesss 851
Cdd:TIGR00606 759 DIQRLKNDIEEqetllgTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAK-----LQGSDLDRTVQQ------- 826
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 852 IRLELLSVDTDRRHLRERVELLEKEIQEHMIAHQAYESQISSITKNMSKLEEDIKREHQDKSSVLADLTSVRELCVKLEA 931
Cdd:TIGR00606 827 VNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKD 906
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 932 SKD-------LLSRQLASKSMDYEKVLGELEDVKSEAELLKKQLSSERLTIQNLETLLATSRDKEFQnhltshEKDSEIQ 1004
Cdd:TIGR00606 907 AKEqdspletFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLK------QKETELN 980
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*..
gi 2024501339 1005 LLKDKLTLAEGKLSSHNREVSMLRSKVAQLQTDYDVLKRQLTteRFERERAIQEMRR 1061
Cdd:TIGR00606 981 TVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLT--LRKRENELKEVEE 1035
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
199-693 |
1.79e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.86 E-value: 1.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 199 LQVADNRIQELQSEVTQLQEKleiSENGKKNYSKQVEYLQQSNKELENRIQDLLDTKKNVTSEVVHLSNKNEELCQELNE 278
Cdd:TIGR04523 206 LKKKIQKNKSLESQISELKKQ---NNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKK 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 279 IDHLAQQLERHKEIVLETADKE----IGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLE 354
Cdd:TIGR04523 283 IKELEKQLNQLKSEISDLNNQKeqdwNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQ 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 355 LLLNQLEQEKQRLteKTENFEIKERELVLEIERMRLEYGIALGDKSPSRLDAFVKTLEDDRDYYKRELEYLQKMIKRRPS 434
Cdd:TIGR04523 363 RELEEKQNEIEKL--KKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNS 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 435 PSRRSPEKSEDLRLITRE----RDELQSMLDRFEKHMIEIQSNVKLLTAErdrlnilYEQSQSELNRLRREAKhnlvsqs 510
Cdd:TIGR04523 441 EIKDLTNQDSVKELIIKNldntRESLETQLKVLSRSINKIKQNLEQKQKE-------LKSKEKELKKLNEEKK------- 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 511 hvgedgdaslaDFRRLMAEKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQ--FELERCELKSTISILKERIKSLEN 588
Cdd:TIGR04523 507 -----------ELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKddFELKKENLEKEIDEKNKEIEELKQ 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 589 ELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVN 668
Cdd:TIGR04523 576 TQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIK 655
|
490 500
....*....|....*....|....*
gi 2024501339 669 VLRSTITVLDKEKDNLQETVDEKTE 693
Cdd:TIGR04523 656 EIRNKWPEIIKKIKESKTKIDDIIE 680
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
195-772 |
1.80e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.86 E-value: 1.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 195 IADLLQVADNRIQELQSEVTQLQEKLEISENGKKNYSKQVEYLQQSNKELENRIQDLLDTKKNVTSEVVHLSNKNEELCQ 274
Cdd:TIGR04523 87 LNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKK 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 275 ELNEIDHLAQQLERHKEIVLETADKeIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLE 354
Cdd:TIGR04523 167 QKEELENELNLLEKEKLNIQKNIDK-IKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKT 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 355 LLLNQLEQEKQRLTEKTENFEIKERELVLEIERMrleygialgdkspsrlDAFVKTLEDDRDYYKRELEYL--QKMIKRR 432
Cdd:TIGR04523 246 TEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQN----------------NKKIKELEKQLNQLKSEISDLnnQKEQDWN 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 433 PSPSRRSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRRE------AKHNL 506
Cdd:TIGR04523 310 KELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKEnqsykqEIKNL 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 507 VSQShvgEDGDASLADFRRLMAEKESL-----REKLKIQQEAANL--EKSKMQHDISVLENNIQQFELERCELKSTISIL 579
Cdd:TIGR04523 390 ESQI---NDLESKIQNQEKLNQQKDEQikklqQEKELLEKEIERLkeTIIKNNSEIKDLTNQDSVKELIIKNLDNTRESL 466
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 580 KERIKSLEN--------------ELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEE 645
Cdd:TIGR04523 467 ETQLKVLSRsinkikqnleqkqkELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDE 546
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 646 IVK---------LEEKIDRLNQKstsqdeaVNVLRSTITVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTL 716
Cdd:TIGR04523 547 LNKddfelkkenLEKEIDEKNKE-------IEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKEL 619
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 2024501339 717 SELESSTDQLKDLLSSRDREISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDL 772
Cdd:TIGR04523 620 EKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKI 675
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
413-642 |
2.25e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 2.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 413 DDRDYYKRELEYLQKMIKRRPSPSRRSPEK----SEDLRLITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILY 488
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEekalLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 489 EQSQSELNRLRREA-KHNLVSQSHVGEDGDASLADFRRLMAEKESLREklkIQQEAANLEKskmqhDISVLENNIQQFEL 567
Cdd:COG4942 100 EAQKEELAELLRALyRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPA---RREQAEELRA-----DLAELAALRAELEA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024501339 568 ERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSA 642
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
530-879 |
2.83e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 48.28 E-value: 2.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 530 KESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKA 609
Cdd:pfam10174 301 KESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKSTLAG 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 610 ELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDKEKDNLQETVD 689
Cdd:pfam10174 381 EIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQRE 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 690 ----EKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSS---------------------RDREISSLRRQL 744
Cdd:pfam10174 461 redrERLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSlassglkkdsklksleiaveqKKEECSKLENQL 540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 745 DASHtEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKENQEL 824
Cdd:pfam10174 541 KKAH-NAEEAVRTNPEINDRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAELESLTLRQMKEQNKK 619
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 2024501339 825 LEKFRMLHTQaedwEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQE 879
Cdd:pfam10174 620 VANIKHGQQE----MKKKGAQLLEEARRREDNLADNSQQLQLEELMGALEKTRQE 670
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
584-1010 |
2.84e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 48.54 E-value: 2.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 584 KSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVedlqhrlslkKDELQSAQEEIVKLEEKIDRLNQKSTSQ 663
Cdd:COG5022 785 RLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTI----------KREKKLRETEEVEFSLKAEVLIQKFGRS 854
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 664 DEAVNVLRSTI--TVLDKEKDNLQETVDEKTEKiacLDDNlankeKTITHLRLTLSELESSTDQLKDLLSSRDREISSLR 741
Cdd:COG5022 855 LKAKKRFSLLKkeTIYLQSAQRVELAERQLQEL---KIDV-----KSISSLKLVNLELESEIIELKKSLSSDLIENLEFK 926
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 742 RQLDASHTEIAETGRVKEIALKE---NRRLQDDLATMTRENQAvSSELEDAIREKEEMKTRVHNYITEVSRFESLIASKE 818
Cdd:COG5022 927 TELIARLKKLLNNIDLEEGPSIEyvkLPELNKLHEVESKLKET-SEEYEDLLKKSTILVREGNKANSELKNFKKELAELS 1005
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 819 KENQELLEKFRML-HTQAEDWEIKAHQAEGES-SSIRLELLSVDTDRRHLRERVELLEKEIQE--------HMIAHQAYE 888
Cdd:COG5022 1006 KQYGALQESTKQLkELPVEVAELQSASKIISSeSTELSILKPLQKLKGLLLLENNQLQARYKAlklrrensLLDDKQLYQ 1085
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 889 SQissITKNMSKLEEDIKREHQDKSSVLadLTSVRELCVKLEASKDLLSRQ---LASKSMDYEKVLGELEDVKSEAELLK 965
Cdd:COG5022 1086 LE---STENLLKTINVKDLEVTNRNLVK--PANVLQFIVAQMIKLNLLQEIskfLSQLVNTLEPVFQKLSVLQLELDGLF 1160
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 2024501339 966 KQLSSERLTiqNLETLLATSRDKEFQNHLT---SHEKDSEIQLLKDKL 1010
Cdd:COG5022 1161 WEANLEALP--SPPPFAALSEKRLYQSALYdekSKLSSSEVNDLKNEL 1206
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
204-350 |
1.03e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 1.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 204 NRIQELQSEVTQLQEKLEISENGKKNYSKQVEYLQ--QSNKELENRIQDLLDTKKNVTSEVVHLSNKNEELCQELNEIDH 281
Cdd:COG4717 95 EELEELEEELEELEAELEELREELEKLEKLLQLLPlyQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAE 174
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2024501339 282 LAQQLERHKEIVLETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDK 350
Cdd:COG4717 175 LQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEE 243
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
528-725 |
1.19e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.59 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 528 AEKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLI-------QT 600
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGeraralyRS 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 601 SDDSSQLKAelcslhLLNeqlQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDKE 680
Cdd:COG3883 99 GGSVSYLDV------LLG---SESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAA 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2024501339 681 KDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQ 725
Cdd:COG3883 170 KAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAA 214
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
529-728 |
2.04e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 45.39 E-value: 2.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 529 EKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLK 608
Cdd:PHA02562 189 KIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIK 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 609 AELCSLHLLNEQLQ---------RTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDK 679
Cdd:PHA02562 269 SKIEQFQKVIKMYEkggvcptctQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKIST 348
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2024501339 680 EKDNLQETVDE-----------------KTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKD 728
Cdd:PHA02562 349 NKQSLITLVDKakkvkaaieelqaefvdNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTDLLKD 414
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
571-1054 |
2.05e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.44 E-value: 2.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 571 ELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLhllnEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLE 650
Cdd:PRK03918 190 NIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEL----EELKEEIEELEKELESLEGSKRKLEEKIRELE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 651 EKIDRLNQKSTSQDEAVNVLRStITVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLL 730
Cdd:PRK03918 266 ERIEELKKEIEELEEKVKELKE-LKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELK 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 731 ssrdREISSLRRQLDASHTEIAETGRVKEIaLKENRRLQDDLATMTRENqaVSSELEDAIREKEEMKTRVHNYITEVSRF 810
Cdd:PRK03918 345 ----KKLKELEKRLEELEERHELYEEAKAK-KEELERLKKRLTGLTPEK--LEKELEELEKAKEEIEEEISKITARIGEL 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 811 ESLIASKEKENQELLEKFRM------LHTQAEDWEIKAHQAEgESSSIRLELLSVDTDRRHLRERVELLEKEI--QEHMI 882
Cdd:PRK03918 418 KKEIKELKKAIEELKKAKGKcpvcgrELTEEHRKELLEEYTA-ELKRIEKELKEIEEKERKLRKELRELEKVLkkESELI 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 883 AHQAYESQISSITKNMSKLE-EDIKREHQDkssvladLTSVRELCVKLEASKDLLSRQLaSKSMDYEKVLGELEDVKSEA 961
Cdd:PRK03918 497 KLKELAEQLKELEEKLKKYNlEELEKKAEE-------YEKLKEKLIKLKGEIKSLKKEL-EKLEELKKKLAELEKKLDEL 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 962 ELLKKQLSSE--RLTIQNLETLLATSRD-KEFQNHLTS--------HEKDSEIQLLKDKLTLAEGKLSSHNREVSMLRSK 1030
Cdd:PRK03918 569 EEELAELLKEleELGFESVEELEERLKElEPFYNEYLElkdaekelEREEKELKKLEEELDKAFEELAETEKRLEELRKE 648
|
490 500
....*....|....*....|....
gi 2024501339 1031 VAQLQTDYDVLKRQLTTERFERER 1054
Cdd:PRK03918 649 LEELEKKYSEEEYEELREEYLELS 672
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
546-803 |
2.07e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 2.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 546 LEKSKMQHDISVLENNIQQFElercELKSTISILKERIKSLEnELKLKSSKLIQTSDDSSQLKAELcslhllneqLQRTV 625
Cdd:COG4913 218 LEEPDTFEAADALVEHFDDLE----RAHEALEDAREQIELLE-PIRELAERYAAARERLAELEYLR---------AALRL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 626 EDLQHRLSLKKDELQSAQEEIVKLEEKIDRLnqkstsqdeavnvlrstitvlDKEKDNLQETVDEKTEKIACLD-DNLAN 704
Cdd:COG4913 284 WFAQRRLELLEAELEELRAELARLEAELERL---------------------EARLDALREELDELEAQIRGNGgDRLEQ 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 705 KEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDASHTEIAETgrvKEIALKENRRLQDDLATMTRENQAVSS 784
Cdd:COG4913 343 LEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAAL---LEALEEELEALEEALAEAEAALRDLRR 419
|
250
....*....|....*....
gi 2024501339 785 ELEDAIREKEEMKTRVHNY 803
Cdd:COG4913 420 ELRELEAEIASLERRKSNI 438
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
28-376 |
2.60e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.11 E-value: 2.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 28 ESLPLVEKLFSDLVHTTESLRSA--KLSAGKIEKECSnyDAIIEPYKTETAKLTRENNELHLEVLKLKEQSD------HH 99
Cdd:pfam15921 458 ESLEKVSSLTAQLESTKEMLRKVveELTAKKMTLESS--ERTVSDLTASLQEKERAIEATNAEITKLRSRVDlklqelQH 535
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 100 IKDLKASLRRAENEAADLRFLNNQYVHKIKLLEKESKAKTEKIQQlQEKNLQAVVQTPGGRKRNIPFRRQRMQidqpvpp 179
Cdd:pfam15921 536 LKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQ-HGRTAGAMQVEKAQLEKEINDRRLELQ------- 607
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 180 savsaypvpqpedpYIADLLQVADNRIQELQSEVTQLQ-EKLEISENGKKNYsKQVEYLQQSNKELENRIQDLLDTKKNV 258
Cdd:pfam15921 608 --------------EFKILKDKKDAKIRELEARVSDLElEKVKLVNAGSERL-RAVKDIKQERDQLLNEVKTSRNELNSL 672
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 259 TSEVVHLS----NKNEELCQELN----EIDHLAQQLERHKEIV--LETAD-----------KEIGEAKKEIERKDSEIQD 317
Cdd:pfam15921 673 SEDYEVLKrnfrNKSEEMETTTNklkmQLKSAQSELEQTRNTLksMEGSDghamkvamgmqKQITAKRGQIDALQSKIQF 752
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 2024501339 318 LEETITRLKSELSSCRRQNERLSEELFGKADDKENLELLLNQLEQEKQRLTEKTENFEI 376
Cdd:pfam15921 753 LEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEV 811
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
548-909 |
2.67e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.42 E-value: 2.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 548 KSKMQHDISVLENNIQQFELERCELKSTISILKERIKSL-------ENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQ 620
Cdd:TIGR00606 690 EAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMlglapgrQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEE 769
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 621 LQRTVEDLQHRLSLKKDEL------QSAQEEIVKLEEKIDRLNQKSTSQDeavnvLRSTITVLDKEKDNLQETVDEKTEK 694
Cdd:TIGR00606 770 QETLLGTIMPEEESAKVCLtdvtimERFQMELKDVERKIAQQAAKLQGSD-----LDRTVQQVNQEKQEKQHELDTVVSK 844
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 695 IACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRD----------REISSLRRQLDASHTEIAETGRVKEIALKE 764
Cdd:TIGR00606 845 IELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQqfeeqlvelsTEVQSLIREIKDAKEQDSPLETFLEKDQQE 924
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 765 NRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSrfESLIASKEKENQELLEKFRMLHTQAEDWE--IKA 842
Cdd:TIGR00606 925 KEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGK--DDYLKQKETELNTVNAQLEECEKHQEKINedMRL 1002
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 843 HQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQEHMiaHQAYESQISSITKNMSKLEED---IKREH 909
Cdd:TIGR00606 1003 MRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHL--KEMGQMQVLQMKQEHQKLEENidlIKRNH 1070
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
530-1061 |
2.89e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 44.89 E-value: 2.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 530 KESLREKLKIQQEAANLEKSKmqHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKA 609
Cdd:PRK01156 152 KKILDEILEINSLERNYDKLK--DVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNN 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 610 ELCSLHLLNEQLQR--TVEDLQHRLSLK----KDELQSAQEEIVKLEEKIDRLNQKSTSqdeAVNVLRSTItvldKEKDN 683
Cdd:PRK01156 230 AMDDYNNLKSALNElsSLEDMKNRYESEiktaESDLSMELEKNNYYKELEERHMKIIND---PVYKNRNYI----NDYFK 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 684 LQETVDEKTEKIACLDDNLANKEKTIThlrlTLSELESSTDQLKDLLSSRD---REISSLRRQLDASHTEIAETGRVKEI 760
Cdd:PRK01156 303 YKNDIENKKQILSNIDAEINKYHAIIK----KLSVLQKDYNDYIKKKSRYDdlnNQILELEGYEMDYNSYLKSIESLKKK 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 761 ALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHTQA----- 835
Cdd:PRK01156 379 IEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSvcpvc 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 836 -------------EDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQEHMIahqAYESQISSITKNMSKLE 902
Cdd:PRK01156 459 gttlgeeksnhiiNHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSI---NEYNKIESARADLEDIK 535
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 903 EDIKR-----------EHQDKSSVLADLTSVRELCVKLEASKDLL--------SRQLASKSMDYEKVLGELE----DVKS 959
Cdd:PRK01156 536 IKINElkdkhdkyeeiKNRYKSLKLEDLDSKRTSWLNALAVISLIdietnrsrSNEIKKQLNDLESRLQEIEigfpDDKS 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 960 ---------------------EAELLKKQLSSERLTIQNLETLLATSRDKE-FQNHLTSHEKDSEiqllkDKLTLAEGKL 1017
Cdd:PRK01156 616 yidksireieneannlnnkynEIQENKILIEKLRGKIDNYKKQIAEIDSIIpDLKEITSRINDIE-----DNLKKSRKAL 690
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 2024501339 1018 SSHNREVSMLRSKVAQLQTDYDVLKRQLTterfERERAIQEMRR 1061
Cdd:PRK01156 691 DDAKANRARLESTIEILRTRINELSDRIN----DINETLESMKK 730
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
669-800 |
2.90e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 44.57 E-value: 2.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 669 VLRSTITVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDASH 748
Cdd:PRK09039 43 FLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELA 122
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 2024501339 749 TEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRV 800
Cdd:PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKI 174
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
205-713 |
3.51e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.65 E-value: 3.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 205 RIQELQSEVTQLQEKLEISENGKKNYSKQVEYLQQSNKELENRIQDLLDT-------KKNVTSEVVHLSNKNEELCQEL- 276
Cdd:PRK02224 252 ELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEaglddadAEAVEARREELEDRDEELRDRLe 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 277 ----------NEIDHLAQQLERHKEIVLE------TADKEIGEAKKEIERKDSEIQDLEETItrlkselsscrrqnERLS 340
Cdd:PRK02224 332 ecrvaaqahnEEAESLREDADDLEERAEElreeaaELESELEEAREAVEDRREEIEELEEEI--------------EELR 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 341 EELFGKADDKENLELLLNQLEQEKQRLTEKtenfeIKERELVLEIERMRLEYGIALGDK-------SPSRLDAFVKTLED 413
Cdd:PRK02224 398 ERFGDAPVDLGNAEDFLEELREERDELRER-----EAELEATLRTARERVEEAEALLEAgkcpecgQPVEGSPHVETIEE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 414 DRDyYKRELEYLQKMIKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFEkhmieiqsnvKLLTAERDRLnilyEQSQS 493
Cdd:PRK02224 473 DRE-RVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLE----------ELIAERRETI----EEKRE 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 494 ELNRLRREAkhnlvsqshvgEDGDASLADFRRLMAEKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFElERCELK 573
Cdd:PRK02224 538 RAEELRERA-----------AELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLA-AIADAE 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 574 STISILKERIKSLENELKLKSSKLIQTSDDSSQLKAELcslhllneqlqrtvedLQHRLSLKKDELQSAQEEIVKLEEKI 653
Cdd:PRK02224 606 DEIERLREKREALAELNDERRERLAEKRERKRELEAEF----------------DEARIEEAREDKERAEEYLEQVEEKL 669
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 654 DRLNQKSTSQDEAVNVLRSTITVLDKEKDNLqETVDEKTEKIACLDDNLANKEKTITHLR 713
Cdd:PRK02224 670 DELREERDDLQAEIGAVENELEELEELRERR-EALENRVEALEALYDEAEELESMYGDLR 728
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
517-896 |
3.78e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 3.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 517 DASLADFRRLMAEKESLREKLkiqqEAANLEKSKMQHDISVLENNIQQFEL--ERCELKSTISILKERIKSLENELKL-- 592
Cdd:COG4717 84 EEKEEEYAELQEELEELEEEL----EELEAELEELREELEKLEKLLQLLPLyqELEALEAELAELPERLEELEERLEElr 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 593 -KSSKLIQTSDDSSQLKAELCSLHLLN--------EQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQ 663
Cdd:COG4717 160 eLEEELEELEAELAELQEELEELLEQLslateeelQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAA 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 664 DEA--------VNVLRSTITVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDR 735
Cdd:COG4717 240 ALEerlkearlLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEE 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 736 EISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQ-------------AVSSELEDAIREKEEMKTRVHN 802
Cdd:COG4717 320 ELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQleeleqeiaallaEAGVEDEEELRAALEQAEEYQE 399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 803 YITEVSRFESLIASKEKENQELLEKFrmlhtQAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEK--EIQEH 880
Cdd:COG4717 400 LKEELEELEEQLEELLGELEELLEAL-----DEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEdgELAEL 474
|
410
....*....|....*.
gi 2024501339 881 MIAHQAYESQISSITK 896
Cdd:COG4717 475 LQELEELKAELRELAE 490
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
593-1063 |
4.02e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.83 E-value: 4.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 593 KSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVK-LEEKIDRLNQKSTSQDEAVNVLR 671
Cdd:pfam12128 242 EFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDqWKEKRDELNGELSAADAAVAKDR 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 672 STITVLDKEK------------------DNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSE-----LESSTDQLKD 728
Cdd:pfam12128 322 SELEALEDQHgafldadietaaadqeqlPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEqnnrdIAGIKDKLAK 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 729 LLSSRDREI-----------SSLRRQLDASHTEIAETGRVKEIALKENRRLQDDlATMTRE---NQAVSSELEDAIREKE 794
Cdd:pfam12128 402 IREARDRQLavaeddlqaleSELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQ-ATATPElllQLENFDERIERAREEQ 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 795 E---------------MKTRVHNYITEVSRFESLIASKEKENQELLEK--------FRMLHTQAEDW------------- 838
Cdd:pfam12128 481 EaanaeverlqselrqARKRRDQASEALRQASRRLEERQSALDELELQlfpqagtlLHFLRKEAPDWeqsigkvispell 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 839 -------EIKAHQAEGESS--SIRLELLSVDTDRRH-----LRERVELLEKEIQEHMIAHQAYESQISSITK---NMSKL 901
Cdd:pfam12128 561 hrtdldpEVWDGSVGGELNlyGVKLDLKRIDVPEWAaseeeLRERLDKAEEALQSAREKQAAAEEQLVQANGeleKASRE 640
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 902 EEDIKREHQDkssvlADLTsVRELCVKLEASKDLLSRQLASKSmdyEKVLGELEDVKSEAELLKKQLSSERLTIQnlETL 981
Cdd:pfam12128 641 ETFARTALKN-----ARLD-LRRLFDEKQSEKDKKNKALAERK---DSANERLNSLEAQLKQLDKKHQAWLEEQK--EQK 709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 982 LATSRDKEFQNHLTSHEKDSEIQLLKDKLTLAEgklSSHNREVSMLRS----KVAQLQTDYDVLKRqLTTERFERERAIQ 1057
Cdd:pfam12128 710 REARTEKQAYWQVVEGALDAQLALLKAAIAARR---SGAKAELKALETwykrDLASLGVDPDVIAK-LKREIRTLERKIE 785
|
....*.
gi 2024501339 1058 EMRRHG 1063
Cdd:pfam12128 786 RIAVRR 791
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
191-343 |
4.80e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 44.08 E-value: 4.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 191 EDPYIADLLQVADNRIQELQSEVTQLQEKLeisengkKNYSKQVEYLQQSNKELENRIQDLLDTkknvtsevvhlsnkNE 270
Cdd:COG2433 386 IEKELPEEEPEAEREKEHEERELTEEEEEI-------RRLEEQVERLEAEVEELEAELEEKDER--------------IE 444
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024501339 271 ELCQELNEIdhlaqQLERHKEIvletadkeigeakkeieRKDSEIQDLEETITRLKSELSSCRRQNERLSEEL 343
Cdd:COG2433 445 RLERELSEA-----RSEERREI-----------------RKDREISRLDREIERLERELEEERERIEELKRKL 495
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
660-879 |
4.85e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 4.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 660 STSQDEAVNVLRSTITVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISS 739
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 740 LRRQLDASHTEIAE-------TGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFES 812
Cdd:COG4942 95 LRAELEAQKEELAEllralyrLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024501339 813 LIASKEKENQELLEKFRMLHTQAEDweiKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQE 879
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQK---LLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
464-802 |
5.12e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.34 E-value: 5.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 464 EKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAKHNLVSQSHVgEDGDASLADFRRLMAEKEslREKLKIQQEA 543
Cdd:pfam17380 281 QKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEM-DRQAAIYAEQERMAMERE--RELERIRQEE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 544 ANLEKSKM-QHDISVLENNIQqfELERCELKStisilKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQ 622
Cdd:pfam17380 358 RKRELERIrQEEIAMEISRMR--ELERLQMER-----QQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQE 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 623 RTVEDLQHRLSLKKD-ELQSAQEEIVKLEEKIDRLNQKSTSQdeavnvlRSTITVLDKEKDNLQETVDEKTEKIaclddn 701
Cdd:pfam17380 431 EARQREVRRLEEERArEMERVRLEEQERQQQVERLRQQEEER-------KRKKLELEKEKRDRKRAEEQRRKIL------ 497
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 702 lankEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQldashtEIAETGRVKEIALKENRRLQDDLATMTRENqa 781
Cdd:pfam17380 498 ----EKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERR------REAEEERRKQQEMEERRRIQEQMRKATEER-- 565
|
330 340
....*....|....*....|.
gi 2024501339 782 vsSELEDAIREKEEMKTRVHN 802
Cdd:pfam17380 566 --SRLEAMEREREMMRQIVES 584
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
270-792 |
6.37e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 6.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 270 EELCQELNEIDHLAQQLERHKEIV-LETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFG-KA 347
Cdd:COG4913 258 RELAERYAAARERLAELEYLRAALrLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGnGG 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 348 DDKENLELLLNQLEQEKQRLTEKTENFEIKERELVLEIERmrleygialgdkSPSRLDAFVKTLEDDRDYYKRELEYLQk 427
Cdd:COG4913 338 DRLEQLEREIERLERELEERERRRARLEALLAALGLPLPA------------SAEEFAALRAEAAALLEALEEELEALE- 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 428 miKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQSN------------------VKLLTAERD------- 482
Cdd:COG4913 405 --EALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDAlaealgldeaelpfvgelIEVRPEEERwrgaier 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 483 -----RLNILYEQSQseLNRLRREAKHNLVSQSHVGEDGDASLADFRRLMAEKESLREKLKIQQ-EAANLEKSKMQHDIS 556
Cdd:COG4913 483 vlggfALTLLVPPEH--YAAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDPDSLAGKLDFKPhPFRAWLEAELGRRFD 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 557 VLE-NNIQQFELER------CELKS--------------TISIL----KERIKSLENELKLKSSKLIQTSDDSSQLKAEL 611
Cdd:COG4913 561 YVCvDSPEELRRHPraitraGQVKGngtrhekddrrrirSRYVLgfdnRAKLAALEAELAELEEELAEAEERLEALEAEL 640
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 612 cslhllnEQLQRTVEDLQHRLSLKKDEL--QSAQEEIVKLEEKIDRLNQkstSQDEaVNVLRSTITVLDKEKDNLQETVD 689
Cdd:COG4913 641 -------DALQERREALQRLAEYSWDEIdvASAEREIAELEAELERLDA---SSDD-LAALEEQLEELEAELEELEEELD 709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 690 EKTEKIACLDDNLANKEKTITHLRLTLSELEsstdqlkdllssrDREISSLRRQLDASHTEIAETGRVKEIAlkenRRLQ 769
Cdd:COG4913 710 ELKGEIGRLEKELEQAEEELDELQDRLEAAE-------------DLARLELRALLEERFAAALGDAVERELR----ENLE 772
|
570 580
....*....|....*....|...
gi 2024501339 770 DDLATMTRENQAVSSELEDAIRE 792
Cdd:COG4913 773 ERIDALRARLNRAEEELERAMRA 795
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
513-760 |
7.18e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 7.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 513 GEDGDASLADFRRLMAEKESLREKLKIQQEAANLEKSKMQhDISVLENNIQQFELERCELKStisiLKERIKSLENELKl 592
Cdd:COG4913 605 GFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQ-ERREALQRLAEYSWDEIDVAS----AEREIAELEAELE- 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 593 kssKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKST----------- 661
Cdd:COG4913 679 ---RLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARlelralleerf 755
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 662 -------SQDEAVNVLRSTITVLDKEKDNLQETVDEKTEK--------IACLDDNLANKEKTITHL-RLTLSELESSTDQ 725
Cdd:COG4913 756 aaalgdaVERELRENLEERIDALRARLNRAEEELERAMRAfnrewpaeTADLDADLESLPEYLALLdRLEEDGLPEYEER 835
|
250 260 270
....*....|....*....|....*....|....*.
gi 2024501339 726 LKDLLSSR-DREISSLRRQLDASHTEIAEtgRVKEI 760
Cdd:COG4913 836 FKELLNENsIEFVADLLSKLRRAIREIKE--RIDPL 869
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
562-735 |
7.37e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 7.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 562 IQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKD--EL 639
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNnkEY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 640 QSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDKEKDNLQETVDEKTEKiacLDDNLANKEKTITHLRLTLSEL 719
Cdd:COG1579 92 EALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAE---LDEELAELEAELEELEAEREEL 168
|
170
....*....|....*.
gi 2024501339 720 ESSTDqlKDLLSSRDR 735
Cdd:COG1579 169 AAKIP--PELLALYER 182
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
206-560 |
8.18e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.56 E-value: 8.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 206 IQELQSEVTQLQEKLEISENGKKNYSKQVEYLQQsnkELENriQDLLDTKknVTSEVVHLSNKNEELCQELNEidhLAQQ 285
Cdd:pfam05483 445 LQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKT---ELEK--EKLKNIE--LTAHCDKLLLENKELTQEASD---MTLE 514
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 286 LERHKEivletadkEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLELLLNQLEQEKQ 365
Cdd:pfam05483 515 LKKHQE--------DIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKE 586
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 366 RLTEKTENFEIKERELV---------LEIERMRLEYGIALGDKSPSRLDAFVKTLEDDRDYYKRELEYL----QKMIKRR 432
Cdd:pfam05483 587 KQMKILENKCNNLKKQIenknknieeLHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIidnyQKEIEDK 666
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 433 PSPSRRSPEKSEDLRLITRERDELQSMLDRFEKHmiEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAKhnlvSQSHV 512
Cdd:pfam05483 667 KISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQH--KIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQ----EQSSA 740
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 2024501339 513 GEDGDASLADFRrlmAEKESLREKLKIQQEAANLEKSKMQHDISVLEN 560
Cdd:pfam05483 741 KAALEIELSNIK---AELLSLKKQLEIEKEEKEKLKMEAKENTAILKD 785
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
198-1058 |
8.80e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.42 E-value: 8.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 198 LLQVADNRIQELQSEVTQLQEKLEISENGKKNYskqvEYLQQSNKELENRIQDLLDTKKNVTSEVVHLSNKNEELcqELN 277
Cdd:pfam02463 178 LIEETENLAELIIDLEELKLQELKLKEQAKKAL----EYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRD--EQE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 278 EIDHLAQQLERHKEIvLETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLELLL 357
Cdd:pfam02463 252 EIESSKQEIEKEEEK-LAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKEL 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 358 NQLEQEKQRLTEKTENFEIKERELVLEIERMRLEYGIALGDKspSRLDAFVKTLEDDRDYYKRELEYLQKMIKRRPSPSR 437
Cdd:pfam02463 331 KKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLE--EELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQ 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 438 RSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAKHNLVSQSHVGEDGD 517
Cdd:pfam02463 409 LLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLEL 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 518 ASLADFRRLMAEKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKL 597
Cdd:pfam02463 489 LLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVR 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 598 IQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVL 677
Cdd:pfam02463 569 ALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGL 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 678 DKEKDNLQETVDEKTEKIACLDDNLANKEKTIThLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDASHTEIAETGRV 757
Cdd:pfam02463 649 RKGVSLEEGLAEKSEVKASLSELTKELLEIQEL-QEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRV 727
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 758 KEIALKENRRLQddlatmtRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHTQAED 837
Cdd:pfam02463 728 QEAQDKINEELK-------LLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQE 800
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 838 WEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQEHMIAHQAYESQISSITKNMSKLEEDIKREHQDKSSVLA 917
Cdd:pfam02463 801 EELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELE 880
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 918 DLTSVRELCVKLEASKDLLSRQLASKSMDYEKVLGELEDVKSEAELLKKQLSSERltiQNLETLLATSRDKEFQNHLTSH 997
Cdd:pfam02463 881 EQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEE---EPEELLLEEADEKEKEENNKEE 957
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2024501339 998 EKDSEIQLLKDKLTLAEGKLsshnrevsMLRSKVAQLQTDYDVLKRQLTTERFERERAIQE 1058
Cdd:pfam02463 958 EEERNKRLLLAKEELGKVNL--------MAIEEFEEKEERYNKDELEKERLEEEKKKLIRA 1010
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
447-660 |
1.02e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 447 RLITRERDELQSMLDRFEKHMIEIQSNVklltaerdrlnilyEQSQSELNRLRReaKHNLVSQSHVGEDGDASLADFRRL 526
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKEL--------------EEAEAALEEFRQ--KNGLVDLSEEAKLLLQQLSELESQ 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 527 MAEKESLREKLKIQQEAANLEKSKMQHDISVLENNiqqfelercelkSTISILKERIKSLENELKLKSSKLIQTSDDSSQ 606
Cdd:COG3206 228 LAEARAELAEAEARLAALRAQLGSGPDALPELLQS------------PVIQQLRAQLAELEAELAELSARYTPNHPDVIA 295
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2024501339 607 LKAELCSL-HLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKS 660
Cdd:COG3206 296 LRAQIAALrAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELE 350
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
303-800 |
1.51e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.74 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 303 EAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLELLLNQLEQEKQRLTEKTENFEIKEREL- 381
Cdd:PRK03918 145 ESREKVVRQILGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELe 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 382 -----VLEIERMR-----LEYGIALGDKSPSRLDAFVKTLEDDRDYYKRELEYLQKMIKrrpsPSRRSPEKSEDLRLITR 451
Cdd:PRK03918 225 klekeVKELEELKeeieeLEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVK----ELKELKEKAEEYIKLSE 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 452 ERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLnilyEQSQSELNRLRREAKHNLVSQSHVGEDGDAsLADFRRLMAEKE 531
Cdd:PRK03918 301 FYEEYLDELREIEKRLSRLEEEINGIEERIKEL----EEKEERLEELKKKLKELEKRLEELEERHEL-YEEAKAKKEELE 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 532 SLREKL------KIQQEAANLEKSK--MQHDISVLENNIQQFELERCELKSTISILK-------------------ERIK 584
Cdd:PRK03918 376 RLKKRLtgltpeKLEKELEELEKAKeeIEEEISKITARIGELKKEIKELKKAIEELKkakgkcpvcgrelteehrkELLE 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 585 SLENELKLKSSKLIQTSDDSSQLKAE-------------LCSLHLLNEQLQRTVEDLQhrlSLKKDELQSAQEEIVKLEE 651
Cdd:PRK03918 456 EYTAELKRIEKELKEIEEKERKLRKElrelekvlkkeseLIKLKELAEQLKELEEKLK---KYNLEELEKKAEEYEKLKE 532
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 652 KIDRLNQKSTSQDEAVNVLRStitvLDKEKDNLQETVDEKTEKIACLDDNLANKE-KTITHLRLTLSELESSTDQLKDLL 730
Cdd:PRK03918 533 KLIKLKGEIKSLKKELEKLEE----LKKKLAELEKKLDELEEELAELLKELEELGfESVEELEERLKELEPFYNEYLELK 608
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 731 SSRDR------EISSLRRQLDASHTEIAETGRV-----KEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTR 799
Cdd:PRK03918 609 DAEKElereekELKKLEEELDKAFEELAETEKRleelrKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKR 688
|
.
gi 2024501339 800 V 800
Cdd:PRK03918 689 R 689
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
202-328 |
1.53e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 1.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 202 ADNRIQELQSEVTQLQEKLEISENgkkNYSKQVEYLQQSNKELENRIQDLLDTKKNVTSEVVHLSNKNEELCQELNEIDH 281
Cdd:PRK12704 73 FEKELRERRNELQKLEKRLLQKEE---NLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISG 149
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 2024501339 282 LAQqlERHKEIVLETADKEI------------GEAKKEIERKDSEIqdLEETITRLKSE 328
Cdd:PRK12704 150 LTA--EEAKEILLEKVEEEArheaavlikeieEEAKEEADKKAKEI--LAQAIQRCAAD 204
|
|
| DUF724 |
pfam05266 |
Protein of unknown function (DUF724); This family contains several uncharacterized proteins ... |
244-320 |
1.71e-03 |
|
Protein of unknown function (DUF724); This family contains several uncharacterized proteins found in Arabidopsis thaliana and other plants. This region is often found associated with Agenet domains and may contain coiled-coil.
Pssm-ID: 428400 [Multi-domain] Cd Length: 188 Bit Score: 40.72 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 244 LENRIQDLLDTKKNVTSEVVHLSNKNEELCQELNEIDHLAQQLERH---KEIVLETADKEIGEAKKEIERKDSEIQDLEE 320
Cdd:pfam05266 100 LKDRQTKLLEELKKLEKKIAEEESEKRKLEEEIDELEKKILELERQlalAKEKKEAADKEIARLKSEAEKLEQEIQDVEL 179
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
529-656 |
2.01e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.15 E-value: 2.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 529 EKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLK 608
Cdd:COG2433 389 ELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSEERREIRKDREIS 468
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2024501339 609 AelcslhllneqLQRTVEDLQHrlslkkdELQSAQEEIVKLEEKIDRL 656
Cdd:COG2433 469 R-----------LDREIERLER-------ELEEERERIEELKRKLERL 498
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
195-430 |
2.38e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.84 E-value: 2.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 195 IADLLQVADNRIQELQSEVTQLQEKLEISENGKKNYSKQ---VEYLQQSNKELENriqdlLDTKKNVTSEVVHLSNKNEE 271
Cdd:PRK05771 84 LEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEierLEPWGNFDLDLSL-----LLGFKYVSVFVGTVPEDKLE 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 272 LCQELNEIDHL--AQQLERHKEIVLETADKEIGEAKKEIERKDSEIQDLE------ETITRLKSELSSCRRQNERLSEEL 343
Cdd:PRK05771 159 ELKLESDVENVeyISTDKGYVYVVVVVLKELSDEVEEELKKLGFERLELEeegtpsELIREIKEELEEIEKERESLLEEL 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 344 fgkaddkenlelllnqleqekQRLTEKTENFEIKERELvLEIERMRLEygialgdkspsrldAFVKTLEDDRDYY----- 418
Cdd:PRK05771 239 ---------------------KELAKKYLEELLALYEY-LEIELERAE--------------ALSKFLKTDKTFAiegwv 282
|
250
....*....|...
gi 2024501339 419 -KRELEYLQKMIK 430
Cdd:PRK05771 283 pEDRVKKLKELID 295
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
451-667 |
2.39e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 2.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 451 RERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAKhnlvsqshvgedgdASLADFRRLMAEK 530
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELA--------------ALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 531 ESLREKLKIQQEA-----ANLEKSKMQHDISVLENN------------IQQFELERCELKSTISILKERIKSLENELKLK 593
Cdd:COG4942 93 AELRAELEAQKEElaellRALYRLGRQPPLALLLSPedfldavrrlqyLKYLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024501339 594 SSKLIQTSDDSSQLKAELCSLHllnEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAV 667
Cdd:COG4942 173 RAELEALLAELEEERAALEALK---AERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
617-879 |
2.56e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.84 E-value: 2.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 617 LNEQLQRTVEDLQ-----HRLSLKKDE----LQSAQEEIVKLEEKIDRLNQ--------KSTSQDEAVNVLRSTITVLDK 679
Cdd:PRK05771 14 LKSYKDEVLEALHelgvvHIEDLKEELsnerLRKLRSLLTKLSEALDKLRSylpklnplREEKKKVSVKSLEELIKDVEE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 680 EKDNLQETVDEKTEKIAclddNLANKEKTITHLRLTLSELESSTDQLKDLLSSR--DREISSLRRQLDASHTEIAETGRV 757
Cdd:PRK05771 94 ELEKIEKEIKELEEEIS----ELENEIKELEQEIERLEPWGNFDLDLSLLLGFKyvSVFVGTVPEDKLEELKLESDVENV 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 758 KEIALKEN---------RRLQDDLATMTRENQAVSSELEDAIREKEEmktrvhnyiteVSRFESLIASKEKENQELLEKF 828
Cdd:PRK05771 170 EYISTDKGyvyvvvvvlKELSDEVEEELKKLGFERLELEEEGTPSEL-----------IREIKEELEEIEKERESLLEEL 238
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 2024501339 829 RMLHTQAEDwEIKAHQAEGESSSIRLELLSVDTDRRHL--------RERVELLEKEIQE 879
Cdd:PRK05771 239 KELAKKYLE-ELLALYEYLEIELERAEALSKFLKTDKTfaiegwvpEDRVKKLKELIDK 296
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
888-1061 |
2.97e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.54 E-value: 2.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 888 ESQISSITKNMSKLEEDIKREHQDKSSVLADLtsvRELCVKLEASKDLLSRQLASKSMDYEKVLGELEDVKSEAELLKKQ 967
Cdd:PHA02562 194 QQQIKTYNKNIEEQRKKNGENIARKQNKYDEL---VEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSK 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 968 LSserlTIQNLETLL--------ATSRDKEFQNHLTS-HEKDSEIQLLKDKLTLAEGKLSSHNREVSMLRSKVAQLQTDY 1038
Cdd:PHA02562 271 IE----QFQKVIKMYekggvcptCTQQISEGPDRITKiKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKI 346
|
170 180
....*....|....*....|...
gi 2024501339 1039 DVLKRQLTTERFERERAIQEMRR 1061
Cdd:PHA02562 347 STNKQSLITLVDKAKKVKAAIEE 369
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
227-487 |
3.02e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.45 E-value: 3.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 227 KKNYSKQVEYLQQSN--------KELEN-RIQDLLDTKKNVTSEVVHL---SNKNEELCQELNEIDHL-AQQLERHKEIV 293
Cdd:PRK05771 15 KSYKDEVLEALHELGvvhiedlkEELSNeRLRKLRSLLTKLSEALDKLrsyLPKLNPLREEKKKVSVKsLEELIKDVEEE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 294 LETADKEIGEAKKEIERKDSEIQDLEETITRLK--SELS---SCRRQNERLSEELFGKADDKENlelllnqleqekqrlt 368
Cdd:PRK05771 95 LEKIEKEIKELEEEISELENEIKELEQEIERLEpwGNFDldlSLLLGFKYVSVFVGTVPEDKLE---------------- 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 369 ektENFEIKERELVLEIERMRLEYGIALgdkspsrldAFVKTLEDDRDYYKRELEYLQKMIKRRPSPSRRSPEKSEDLRL 448
Cdd:PRK05771 159 ---ELKLESDVENVEYISTDKGYVYVVV---------VVLKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEE 226
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 2024501339 449 ITRERDELQSMLDRF-EKHMIEIQSNVKLLTAERDRLNIL 487
Cdd:PRK05771 227 IEKERESLLEELKELaKKYLEELLALYEYLEIELERAEAL 266
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
199-391 |
3.72e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 3.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 199 LQVADNRIQELQSEVTQLQEKLEISENGKKNYSKQVEYLQQSNKELENRIQDLLDTKKNVTSEVVHLSNKNEELCQELNE 278
Cdd:COG4942 29 LEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 279 IDHLAQQLERHKEIVLETADKEIGEA--------------KKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELF 344
Cdd:COG4942 109 LLRALYRLGRQPPLALLLSPEDFLDAvrrlqylkylaparREQAEELRADLAELAALRAELEAERAELEALLAELEEERA 188
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2024501339 345 GKADDKENLELLLNQLEQEKQRLTEKTENFEIKERELVLEIERMRLE 391
Cdd:COG4942 189 ALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
190-343 |
3.86e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 3.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 190 PEDPYIADLLQVADNRIQELQSEVTQLQEKLEISENGKKNYSKQVEYLQQSNKELENRIQDLLDTKKNVTSEVVHLSNKN 269
Cdd:TIGR02169 784 LEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKK 863
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024501339 270 EELCQELNEIDHLAQQLE-RHKEIvletaDKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEEL 343
Cdd:TIGR02169 864 EELEEELEELEAALRDLEsRLGDL-----KKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEEL 933
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
334-1060 |
4.21e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.50 E-value: 4.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 334 RQNERLSEELFGKADDKENLELLLNQLEQEKQRLTEKTENFEIKERELVLEIERMRLEYGIALGDKSPSRLDAFVKTLED 413
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQEL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 414 DRDYYKRELEYLQKMIKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQS 493
Cdd:pfam02463 246 LRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKK 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 494 ELNRLRREaKHNLVSQSHVGEDGDASLADFRRLMAEKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELK 573
Cdd:pfam02463 326 AEKELKKE-KEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEE 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 574 STISILKERIKSLENELKLKSSKL------IQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRLS--LKKDELQSAQEE 645
Cdd:pfam02463 405 KEAQLLLELARQLEDLLKEEKKEEleileeEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSedLLKETQLVKLQE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 646 IVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQ 725
Cdd:pfam02463 485 QLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQ 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 726 LKDLLSSRDREISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRVHNYIT 805
Cdd:pfam02463 565 KLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAK 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 806 E-----VSRFESLIASKEKENQELLEKFRMLHTQAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQEH 880
Cdd:pfam02463 645 EsglrkGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLA 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 881 MIAHQAYEsqISSITKNMSKLEEDIKREHQDKSSVLADLTSVRELCVKLEASKDLLSR-QLASKSMDYEKVLGELEDVKS 959
Cdd:pfam02463 725 DRVQEAQD--KINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEReKTEKLKVEEEKEEKLKAQEEE 802
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 960 EAELLKKQLSSERLTIQNLETLLATSRDKEFQNHLtSHEKDSEIQLLKDKLTLAEGKLSSHNREVSMLRSKVAQLQTDYD 1039
Cdd:pfam02463 803 LRALEEELKEEAELLEEEQLLIEQEEKIKEEELEE-LALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEE 881
|
730 740
....*....|....*....|.
gi 2024501339 1040 VLKRQLTTERFERERAIQEMR 1060
Cdd:pfam02463 882 QKLKDELESKEEKEKEEKKEL 902
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
629-795 |
4.66e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 4.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 629 QHRLSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRstitvldkekdNLQETVDEktekiaclDDNLANKEKT 708
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQ-----------RLAEYSWD--------EIDVASAERE 669
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 709 ITHLRLTLSELESSTDQLKdllssrdreisSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELED 788
Cdd:COG4913 670 IAELEAELERLDASSDDLA-----------ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEA 738
|
....*..
gi 2024501339 789 AIREKEE 795
Cdd:COG4913 739 AEDLARL 745
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
237-665 |
7.90e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.34 E-value: 7.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 237 LQQSNKELENRIQdLLDTKKNVTSEVVHLSNKNEELCQELNEIDHLAQQLERHKEIVLETADkEIGEAKKEIERKDSEIQ 316
Cdd:TIGR00618 461 LQESAQSLKEREQ-QLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDID-NPGPLTRRMQRGEQTYA 538
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 317 DLEETITRLKSELSSCRRQNERLSEELFGKADDKENLELLLNQLEQEKQRLTEKTENFEiKERELVLEIERMRLEYGIAL 396
Cdd:TIGR00618 539 QLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQ-DLTEKLSEAEDMLACEQHAL 617
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 397 GDKSPSRLDAFVKTLEDDRDYYKRELEYLQKMIKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQSNVKL 476
Cdd:TIGR00618 618 LRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKE 697
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 477 LTAERDRLNILYEQSQSELNRLRREAKHNLVSQ-SHVGEDGDASLADFRRLMAEKESLREKLKIQQEAANLEK------- 548
Cdd:TIGR00618 698 MLAQCQTLLRELETHIEEYDREFNEIENASSSLgSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVtaalqtg 777
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 549 SKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQtsdDSSQLKAELCSLHLLNEQLQRTVEDL 628
Cdd:TIGR00618 778 AELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQ---EEEQFLSRLEEKSATLGEITHQLLKY 854
|
410 420 430
....*....|....*....|....*....|....*..
gi 2024501339 629 QHRLSlKKDELQSAQEEIVKLEEKIDRLNQKSTSQDE 665
Cdd:TIGR00618 855 EECSK-QLAQLTQEQAKIIQLSDKLNGINQIKIQFDG 890
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
519-785 |
7.91e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 40.27 E-value: 7.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 519 SLADFRRLMAEKESLREKLKIQQ----EAANLEKSKMQHDISVlENNIQQFELERCELKSTISILKERIKSLENELKLKS 594
Cdd:PLN02939 154 ALEDLEKILTEKEALQGKINILEmrlsETDARIKLAAQEKIHV-EILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLK 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 595 SKLIQTSDDSSQLKAELCSLHLLNEQ----------LQRTVEDLQHRLSlkkdelqSAQEEIVKLEE-KIDRLNQKSTS- 662
Cdd:PLN02939 233 EENMLLKDDIQFLKAELIEVAETEERvfklekerslLDASLRELESKFI-------VAQEDVSKLSPlQYDCWWEKVENl 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 663 ---QDEAVNVLRSTITVLDKEKDnLQETVDEKTEKIaclddnlanKEKTITHLRLTLSELesstdqlkdllssRDREISS 739
Cdd:PLN02939 306 qdlLDRATNQVEKAALVLDQNQD-LRDKVDKLEASL---------KEANVSKFSSYKVEL-------------LQQKLKL 362
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 2024501339 740 LRRQLDASHTEIAETGRVKEIALKEnrrLQDDLATMTRENQAVSSE 785
Cdd:PLN02939 363 LEERLQASDHEIHSYIQLYQESIKE---FQDTLSKLKEESKKRSLE 405
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
444-747 |
7.98e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 40.27 E-value: 7.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 444 EDLRLITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQsqseLNRLRREAKHNLVSQSHVgedgdasladF 523
Cdd:PLN02939 156 EDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQ----LEKLRNELLIRGATEGLC----------V 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 524 RRLMAEKESLREKLKIQQEAANLEKSKMQHdISVLENNIQQFELERcelkstiSILKERIKSLEnelklksSKLIQTSDD 603
Cdd:PLN02939 222 HSLSKELDVLKEENMLLKDDIQFLKAELIE-VAETEERVFKLEKER-------SLLDASLRELE-------SKFIVAQED 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 604 SSQLKAelcslhLLNEQLQRTVEDLQHRLSLKKDELQSAQ---EEIVKLEEKIDRLNQkstSQDEAVNVLRSTitvldke 680
Cdd:PLN02939 287 VSKLSP------LQYDCWWEKVENLQDLLDRATNQVEKAAlvlDQNQDLRDKVDKLEA---SLKEANVSKFSS------- 350
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2024501339 681 kdnlqETVDEKTEKIACLDDNL-ANKEKTITHLRLtlseLESSTDQLKDLLSSRDREisSLRRQLDAS 747
Cdd:PLN02939 351 -----YKVELLQQKLKLLEERLqASDHEIHSYIQL----YQESIKEFQDTLSKLKEE--SKKRSLEHP 407
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
785-1038 |
8.03e-03 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 40.06 E-value: 8.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 785 ELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHTQAEDWEI---KAHQAEGESSSIRLELLSVDT 861
Cdd:pfam05622 1 DLSEAQEEKDELAQRCHELDQQVSLLQEEKNSLQQENKKLQERLDQLESGDDSGTPggkKYLLLQKQLEQLQEENFRLET 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 862 DRRHLRERVELLEKEIQEhmIAHQAYESQISSITKNMSKLEEDIKREHQDKSSVL-ADLTSVRElcvKLEASKDLLS--R 938
Cdd:pfam05622 81 ARDDYRIKCEELEKEVLE--LQHRNEELTSLAEEAQALKDEMDILRESSDKVKKLeATVETYKK---KLEDLGDLRRqvK 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 939 QLASKSMDYEKVLGELEDVKSEAELLKKQLSSERLTIQNLETLLATSRDK----EFQNHlTSHEKDSEIQLLKDKLTLAE 1014
Cdd:pfam05622 156 LLEERNAEYMQRTLQLEEELKKANALRGQLETYKRQVQELHGKLSEESKKadklEFEYK-KLEEKLEALQKEKERLIIER 234
|
250 260
....*....|....*....|....
gi 2024501339 1015 GKLSSHNREVsmlrsKVAQLQTDY 1038
Cdd:pfam05622 235 DTLRETNEEL-----RCAQLQQAE 253
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
204-329 |
8.49e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.14 E-value: 8.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501339 204 NRIQELQSEVTQLQEKLEISENGKKNYSKQVEYLQQSNKELENRIQDLLDTKKNVTSEVVHLSNkNEELCQELNEIDHLA 283
Cdd:COG1579 24 HRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRN-NKEYEALQKEIESLK 102
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 2024501339 284 QQLERHKEIVLEtADKEIGEAKKEIERKDSEIQDLEETITRLKSEL 329
Cdd:COG1579 103 RRISDLEDEILE-LMERIEELEEELAELEAELAELEAELEEKKAEL 147
|
|
| |
