|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
77-922 |
1.13e-21 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 102.06 E-value: 1.13e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 77 KLTRENNELHLEVLKLK-EQSDHHIKDLKASLRRAENEAADLRFLNNQYVHKIKLLEKESKAKTEKIQQLQEK--NLQAV 153
Cdd:TIGR02168 217 ELKAELRELELALLVLRlEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKElyALANE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 154 VQTPGGRKRNIPFRRQRMQIDQpvppSAVSAYP--VPQPEDPYIADLLQVADnRIQELQSEVTQLQEKLEISENGKKNYS 231
Cdd:TIGR02168 297 ISRLEQQKQILRERLANLERQL----EELEAQLeeLESKLDELAEELAELEE-KLEELKEELESLEAELEELEAELEELE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 232 KQVELRDKEIERLmlaldggrSHEVISLESRSKSNEKLIAQLNLQVEYLQQSNKELENRIQDLLDTKKNvtsevvhlsNK 311
Cdd:TIGR02168 372 SRLEELEEQLETL--------RSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE---------AE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 312 NEELCQELNEIDHLAQQLERHKEIVLETADkeigEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSeelfGKAD 391
Cdd:TIGR02168 435 LKELQAELEELEEELEELQEELERLEEALE----ELREELEEAEQALDAAERELAQLQARLDSLERLQENLE----GFSE 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 392 DKENLELLLNQLEQEKQRLTEKTEnFEiKERELVLEIermrleygiALGdkspSRLDAFVKtleDDRDYYKRELEYLQKM 471
Cdd:TIGR02168 507 GVKALLKNQSGLSGILGVLSELIS-VD-EGYEAAIEA---------ALG----GRLQAVVV---ENLNAAKKAIAFLKQN 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 472 IKRRPSPSRRSPEKSEDLRLITRER----DELQSMLDRFEKHMIEIQSNVKLLTAerdrlNILYEQSQSELNRLRREAKH 547
Cdd:TIGR02168 569 ELGRVTFLPLDSIKGTEIQGNDREIlkniEGFLGVAKDLVKFDPKLRKALSYLLG-----GVLVVDDLDNALELAKKLRP 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 548 NlvsQSHVGEDGDASLADFRRLmaeKESLREKLKIQQEAANLEKskmqhdisvLENNIQQFELERCELKSTISILKERIK 627
Cdd:TIGR02168 644 G---YRIVTLDGDLVRPGGVIT---GGSAKTNSSILERRREIEE---------LEEKIEELEEKIAELEKALAELRKELE 708
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 628 SLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQD 707
Cdd:TIGR02168 709 ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE 788
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 708 EAVNVLRSTITVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQL 787
Cdd:TIGR02168 789 AQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELI 868
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 788 DASHTEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIaskekenQEL 867
Cdd:TIGR02168 869 EELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRI-------DNL 941
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*
gi 2024501341 868 LEKFRmlhtqaEDWEIKAHQAEGESSSIrlellsvDTDRRHLRERVELLEKEIQE 922
Cdd:TIGR02168 942 QERLS------EEYSLTLEEAEALENKI-------EDDEEEARRRLKRLENKIKE 983
|
|
| cc_Cep135_MBD |
cd22292 |
coiled-coil microtubule binding domain of centrosomal protein of 135 kDa (Cep135) and similar ... |
81-142 |
4.86e-21 |
|
coiled-coil microtubule binding domain of centrosomal protein of 135 kDa (Cep135) and similar proteins; Cep135, also called centrosomal protein 4, is involved in early centriole assembly, duplication, biogenesis, and formation. It is required for the recruitment of CEP295 to the proximal end of new-born centrioles at the centriolar microtubule wall during early S phase in a PLK4-dependent manner. This model corresponds to a conserved coiled-coil domain of Cep135, which is critical for microtubule binding.
Pssm-ID: 412088 [Multi-domain] Cd Length: 62 Bit Score: 87.62 E-value: 4.86e-21
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024501341 81 ENNELHLEVLKLKEQSDHHIKDLKASLRRAENEAADLRFLNNQYVHKIKLLEKESKAKTEKI 142
Cdd:cd22292 1 ENNELHLELIKLKEESDAKIKDLKSSLRKLEHENADLRFLNSQYLHKIKVLEKESKAKSEKI 62
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
314-1054 |
9.36e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 85.88 E-value: 9.36e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 314 ELCQELNEIDH--LAQQLERHKEiVLETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKAd 391
Cdd:TIGR02168 217 ELKAELRELELalLVLRLEELRE-ELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALA- 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 392 dkenlelllnqleQEKQRLTEKTEnfEIKERELVLEIERMRLEYGIALGDKSPSRLDAFVKTLEDdrdyykrELEYLQKM 471
Cdd:TIGR02168 295 -------------NEISRLEQQKQ--ILRERLANLERQLEELEAQLEELESKLDELAEELAELEE-------KLEELKEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 472 IKRRPSPSRRSPEKSEDLRLITRERDELqsmLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAKHNLVS 551
Cdd:TIGR02168 353 LESLEAELEELEAELEELESRLEELEEQ---LETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKK 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 552 QShvgedgDASLADFRRLMAEKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLEN 631
Cdd:TIGR02168 430 LE------EAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 632 ------ELKLKSSKLIQTSDDSSQL-----KAELCSLHLLNEQLQR-TVEDL-----------QHRL---------SLKK 679
Cdd:TIGR02168 504 fsegvkALLKNQSGLSGILGVLSELisvdeGYEAAIEAALGGRLQAvVVENLnaakkaiaflkQNELgrvtflpldSIKG 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 680 DELQSAQEEIVKLEEK----IDRLNQKSTSQDEAVNVLRSTITVLD--KEKDNLQETVDEKtEKIACLDDNLANKEKTIT 753
Cdd:TIGR02168 584 TEIQGNDREILKNIEGflgvAKDLVKFDPKLRKALSYLLGGVLVVDdlDNALELAKKLRPG-YRIVTLDGDLVRPGGVIT 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 754 hlrltlseleSSTDQLKDLLSSRDREISSLRRQLDASHTEIAETgrvkEIALKENRRLQDDLATMTRENQAvssELEDAI 833
Cdd:TIGR02168 663 ----------GGSAKTNSSILERRREIEELEEKIEELEEKIAEL----EKALAELRKELEELEEELEQLRK---ELEELS 725
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 834 REKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHTQAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERV 913
Cdd:TIGR02168 726 RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL 805
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 914 ELLEKEIQEHMIAHQAYESQISSITKNMSKLEEDIKREHQDKSSVLADLTSVRELCVKLEASKDLLSRQLASKSMDYEKV 993
Cdd:TIGR02168 806 DELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASL 885
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2024501341 994 LGELEDVKSEAELLKKQLSSERLTIQNLETLLATSRDKEFQNHLTSHEKDSEIQLLKDKLT 1054
Cdd:TIGR02168 886 EEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS 946
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
313-1061 |
5.34e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 83.57 E-value: 5.34e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 313 EELCQELNEIDHLAQQLERHKEIVLETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADD 392
Cdd:TIGR02168 196 NELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 393 KENLELLLNQLEQEKQRLTEKTENFE-----IKERELVLEIERMRLEYGIALGDKSPSRLDAFVKTLEDdrdyykrELEY 467
Cdd:TIGR02168 276 VSELEEEIEELQKELYALANEISRLEqqkqiLRERLANLERQLEELEAQLEELESKLDELAEELAELEE-------KLEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 468 LQKMIKRRPSPSRRSPEKSEDLRLITRERDELqsmLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAKH 547
Cdd:TIGR02168 349 LKEELESLEAELEELEAELEELESRLEELEEQ---LETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEE 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 548 NLVSQShvgedgDASLADFRRLMAEKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIK 627
Cdd:TIGR02168 426 LLKKLE------EAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQE 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 628 SLEN------ELKLKSSKLIQTSDDSSQL-----KAELCSLHLLNEQLQR-TVEDL-----------QHRL--------- 675
Cdd:TIGR02168 500 NLEGfsegvkALLKNQSGLSGILGVLSELisvdeGYEAAIEAALGGRLQAvVVENLnaakkaiaflkQNELgrvtflpld 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 676 SLKKDELQSAQEEIVKLEEK----IDRLNQKSTSQDEAVNVLRSTITVLD--KEKDNLQETVDEKtEKIACLDDNLANKE 749
Cdd:TIGR02168 580 SIKGTEIQGNDREILKNIEGflgvAKDLVKFDPKLRKALSYLLGGVLVVDdlDNALELAKKLRPG-YRIVTLDGDLVRPG 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 750 KTIT-----------HLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATM 818
Cdd:TIGR02168 659 GVITggsaktnssilERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL 738
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 819 TRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHTQAEDWEIKAHQAEGESSSIRLE 898
Cdd:TIGR02168 739 EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEE 818
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 899 LLSVDTDRRHLRERVELLEKEIQEHMIAHQAYESQISSITKNMSKLEEDIKREHQDKSSVLADLTSVRELCVKLEASKDL 978
Cdd:TIGR02168 819 AANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEE 898
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 979 LSRQLAsksmDYEKVLGELEDvksEAELLKKQLSSERLTIQNLETLLATSRDK-------EFQNHLTSHEK-DSEIQLLK 1050
Cdd:TIGR02168 899 LSEELR----ELESKRSELRR---ELEELREKLAQLELRLEGLEVRIDNLQERlseeyslTLEEAEALENKiEDDEEEAR 971
|
810
....*....|.
gi 2024501341 1051 DKLTLAEGKLA 1061
Cdd:TIGR02168 972 RRLKRLENKIK 982
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
525-1071 |
2.31e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.59 E-value: 2.31e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 525 DRLNILYEQSQSELNRLRREAKhnlvsqshvgedgDAslADFRRLMAEKESLREKLKIQQ-EAANLEKSKMQHDISVLEN 603
Cdd:COG1196 189 ERLEDILGELERQLEPLERQAE-------------KA--ERYRELKEELKELEAELLLLKlRELEAELEELEAELEELEA 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 604 NIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQ 683
Cdd:COG1196 254 ELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELE 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 684 SAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELE 763
Cdd:COG1196 334 ELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALL 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 764 SSTDQLKDLLSSRDREISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRV 843
Cdd:COG1196 414 ERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARL 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 844 HNYITEVSRFESLIAS-KEKENQELLEKFRMLHTQAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEK---- 918
Cdd:COG1196 494 LLLLEAEADYEGFLEGvKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAkagr 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 919 --EIQEHMIAHQAYESQISSITKNMSK--LEEDIKREHQDKSSVLADLTSVRELCVKLEASKDLLSRQLASksmDYEKVL 994
Cdd:COG1196 574 atFLPLDKIRARAALAAALARGAIGAAvdLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAG---RLREVT 650
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024501341 995 GELEDVKSEAELLKKQLSSERLTIQNLETLLATSRDKEFQNHLTSHEKDSEIQLLKDKLTLAEGKLAITKILSSEIK 1071
Cdd:COG1196 651 LEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE 727
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
308-950 |
1.14e-12 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 72.36 E-value: 1.14e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 308 LSNKNEELCQELNEIDHLAQQLErHKEIVLETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELF 387
Cdd:TIGR04523 28 ANKQDTEEKQLEKKLKTIKNELK-NKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLS 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 388 GKADDKENLELLLNQLEQEKQRLTEKTEnfEIKERELVLEIERMRLEYGIALGDKSPSRLDAFVKTLEDDRDYYKRELEY 467
Cdd:TIGR04523 107 KINSEIKNDKEQKNKLEVELNKLEKQKK--ENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLN 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 468 LQKMIKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAKH 547
Cdd:TIGR04523 185 IQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNK 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 548 NLVSQSHvgedgdasladfrrlmAEKESLREKLKIQQEAANLEKSKMQhdISVLENNIQQFELErcELKSTISILKERIK 627
Cdd:TIGR04523 265 IKKQLSE----------------KQKELEQNNKKIKELEKQLNQLKSE--ISDLNNQKEQDWNK--ELKSELKNQEKKLE 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 628 SLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQD 707
Cdd:TIGR04523 325 EIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQE 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 708 EAVNVLRSTITVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQL 787
Cdd:TIGR04523 405 KLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNL 484
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 788 DAshteiaetgRVKEIALKENrrlqdDLATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKENQEL 867
Cdd:TIGR04523 485 EQ---------KQKELKSKEK-----ELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKD 550
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 868 leKFRMlhtQAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQEHMIAHQAYESQISSITKNMSKLEED 947
Cdd:TIGR04523 551 --DFEL---KKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKE 625
|
...
gi 2024501341 948 IKR 950
Cdd:TIGR04523 626 NEK 628
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
203-977 |
6.92e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.10 E-value: 6.92e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 203 DNRIQELQSEVTQLQEklEISENGKKNYSKQVELRD--KEIERLmlaldggRSHEVISLESRSKSNEKLIAQLNLQVEYL 280
Cdd:TIGR02169 243 ERQLASLEEELEKLTE--EISELEKRLEEIEQLLEElnKKIKDL-------GEEEQLRVKEKIGELEAEIASLERSIAEK 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 281 QQSNKELENRIQDLldtkknvtsevvhlsnkNEELCQELNEIDHLAQQLERHKeIVLETADKEIGEAKKEIERKDSEIQD 360
Cdd:TIGR02169 314 ERELEDAEERLAKL-----------------EAEIDKLLAEIEELEREIEEER-KRRDKLTEEYAELKEELEDLRAELEE 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 361 LEETITRLKSELSSCRRQNERLSEELfgkaddkenlelllNQLEQEKQRLTEKTENFEIKERELVLEIERMRleygialg 440
Cdd:TIGR02169 376 VDKEFAETRDELKDYREKLEKLKREI--------------NELKRELDRLQEELQRLSEELADLNAAIAGIE-------- 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 441 dkspSRLDAFVKTLEDDRDYYKRELEYLQKMIKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQSNVKLL 520
Cdd:TIGR02169 434 ----AKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGG 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 521 TAERDRLNILYEQ---SQSELNRLRRE-------AKHNLVSQSHVGEDGDA--SLADFRRLMAEKESLREKLKIQQEAAN 588
Cdd:TIGR02169 510 RAVEEVLKASIQGvhgTVAQLGSVGERyataievAAGNRLNNVVVEDDAVAkeAIELLKRRKAGRATFLPLNKMRDERRD 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 589 LEKSKMQHDISVLENNI---QQFE------------LERCELKSTISIlKERIKSLENEL------------KLKSSKLI 641
Cdd:TIGR02169 590 LSILSEDGVIGFAVDLVefdPKYEpafkyvfgdtlvVEDIEAARRLMG-KYRMVTLEGELfeksgamtggsrAPRGGILF 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 642 QTSD--DSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITV 719
Cdd:TIGR02169 669 SRSEpaELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSS 748
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 720 LDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSEleSSTDQLKDLLSSRDREISSLRRQLDASHTEIAETGR 799
Cdd:TIGR02169 749 LEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH--SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTL 826
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 800 VKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHTQAE 879
Cdd:TIGR02169 827 EKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIE 906
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 880 DWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQEHMIAHQAYEsQISSITKNMSKLEEDIKREHQDKSSVL 959
Cdd:TIGR02169 907 ELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQA-ELQRVEEEIRALEPVNMLAIQEYEEVL 985
|
810
....*....|....*...
gi 2024501341 960 ADLTSVRELCVKLEASKD 977
Cdd:TIGR02169 986 KRLDELKEKRAKLEEERK 1003
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
451-802 |
3.62e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.79 E-value: 3.62e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 451 VKTLEDDRDYYKRELEYLQKMIKRRPSPSRRSPEKSEdlrlitRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNIL 530
Cdd:TIGR02169 200 LERLRREREKAERYQALLKEKREYEGYELLKEKEALE------RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQL 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 531 YEQSQSELNRLRREAKHNLVSQSHvgeDGDASLADFRRLMAEKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFEL 610
Cdd:TIGR02169 274 LEELNKKIKDLGEEEQLRVKEKIG---ELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERK 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 611 ERCELKstisilkERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIV 690
Cdd:TIGR02169 351 RRDKLT-------EEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELA 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 691 KLEEKIDRLNQKSTSQDEAVNVLRSTITVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLK 770
Cdd:TIGR02169 424 DLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASE 503
|
330 340 350
....*....|....*....|....*....|..
gi 2024501341 771 DLLSSRDREISSLRRQLDASHTEIAETGRVKE 802
Cdd:TIGR02169 504 ERVRGGRAVEEVLKASIQGVHGTVAQLGSVGE 535
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
255-811 |
5.53e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 66.97 E-value: 5.53e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 255 EVISLESRSKSNEKLIAQLNLQVEYLQQSNKELENRIQDLLDTKKNVTSEVVHLSNKNEELCQELNEIDHLAQQLErHKE 334
Cdd:TIGR04523 125 ELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLE-LLL 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 335 IVLETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELfgkaddkenlELLLNQLEQEKQRLTEKT 414
Cdd:TIGR04523 204 SNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQL----------NQLKDEQNKIKKQLSEKQ 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 415 ENFEIKERELvleiermrleygialgdkspsrldafvKTLEDDRDYYKRELEYLQKmikrrPSPSRRSPEKSEDLRLITR 494
Cdd:TIGR04523 274 KELEQNNKKI---------------------------KELEKQLNQLKSEISDLNN-----QKEQDWNKELKSELKNQEK 321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 495 ERDELQSMLDRFEKHMIEIQSNVKLLTAERDrlnilyeQSQSELNRLRREAKHNLVSQSHVGEDGDASLADFRRLMAEKE 574
Cdd:TIGR04523 322 KLEEIQNQISQNNKIISQLNEQISQLKKELT-------NSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQIN 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 575 SLREKLKIQQEAANLEKSKmqhdISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAEL 654
Cdd:TIGR04523 395 DLESKIQNQEKLNQQKDEQ----IKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQL 470
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 655 CSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDKEKDNLQETVDEK 734
Cdd:TIGR04523 471 KVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKD 550
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2024501341 735 TE--KIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDASHTEIAETGRVKEIALKENRRL 811
Cdd:TIGR04523 551 DFelKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKL 629
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
563-1024 |
5.70e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 66.99 E-value: 5.70e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 563 LADFRRLMAEKESLREKLKIQQEAANL----------EKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENE 632
Cdd:PRK02224 215 LAELDEEIERYEEQREQARETRDEADEvleeheerreELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 633 LKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLnqkstsqdeavnv 712
Cdd:PRK02224 295 RDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEEL------------- 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 713 lRSTITVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTI-----------THLRLTLSELESSTDQLKDL---LSSRDR 778
Cdd:PRK02224 362 -REEAAELESELEEAREAVEDRREEIEELEEEIEELRERFgdapvdlgnaeDFLEELREERDELREREAELeatLRTARE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 779 EISSLRRQLDASH-----TEIAETGRVKEIALKENRR--LQDDLATMTRENQAVSSELEDAI------REKEEMKTRVHN 845
Cdd:PRK02224 441 RVEEAEALLEAGKcpecgQPVEGSPHVETIEEDRERVeeLEAELEDLEEEVEEVEERLERAEdlveaeDRIERLEERRED 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 846 YITEVSRFESLIASKEKENQELLEKFRMLHTQAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKeIQEHMI 925
Cdd:PRK02224 521 LEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER-IRTLLA 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 926 AHQAYESQISSITKNMSKLEEdikREHQDKSSVLADLTSVRELCVKLEASKDLLSRQLASKSMDY-EKVLGELEDVKSEA 1004
Cdd:PRK02224 600 AIADAEDEIERLREKREALAE---LNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYlEQVEEKLDELREER 676
|
490 500
....*....|....*....|
gi 2024501341 1005 ELLKKQLSSERLTIQNLETL 1024
Cdd:PRK02224 677 DDLQAEIGAVENELEELEEL 696
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
314-856 |
1.41e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 65.45 E-value: 1.41e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 314 ELCQELNEIDHLAQQLERHKEIVLETADkEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGK---- 389
Cdd:PRK02224 210 GLESELAELDEEIERYEEQREQARETRD-EADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLrerl 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 390 ---ADDKENLELLLNQLEQEKQRLTEKTENFEIKERELVLEIERMRLEYGIALGDKSPSRLDAfvKTLEDDRDYYKRELE 466
Cdd:PRK02224 289 eelEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDA--DDLEERAEELREEAA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 467 YLQKMIKRRPSPSRRSPEKSEDLrlitreRDELQSMLDRFEKhmieiqsnvklLTAERDRLNILYEQSQSELNRLRREAK 546
Cdd:PRK02224 367 ELESELEEAREAVEDRREEIEEL------EEEIEELRERFGD-----------APVDLGNAEDFLEELREERDELREREA 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 547 hnlvsqshvgeDGDASLADFRRLMAEKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERI 626
Cdd:PRK02224 430 -----------ELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERL 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 627 KSLEnelklksskliqtsdDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQ 706
Cdd:PRK02224 499 ERAE---------------DLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEA 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 707 DEAVNVLRSTITVLDKEKDNLQETVdEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQ 786
Cdd:PRK02224 564 EEEAEEAREEVAELNSKLAELKERI-ESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAE 642
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024501341 787 LDASHTEIAETGRVKEIALKENrrLQDDLATMTRENQAVSSE---LEDAIREKEEMKTRVHNYITEVSRFESL 856
Cdd:PRK02224 643 FDEARIEEAREDKERAEEYLEQ--VEEKLDELREERDDLQAEigaVENELEELEELRERREALENRVEALEAL 713
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
199-699 |
6.42e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.42 E-value: 6.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 199 LQVADNRIQELQSEVTQLQEKLEISENGKKNYSKQVELRDKEIERLMLALDGGRShEVISLESRSKSNEKLIAQLNLQVE 278
Cdd:COG1196 241 LEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA-ELARLEQDIARLEERRRELEERLE 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 279 YLQQSNKELENRIQDLLDTKKNVTSEVVHLSNKNEELCQELNEIDHLAQQLER---HKEIVLETADKEIGEAKKEIERKD 355
Cdd:COG1196 320 ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAelaEAEEELEELAEELLEALRAAAELA 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 356 SEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLELLLNQLEQEKQRLTEKTENFEIKERELVLEIERMRLEY 435
Cdd:COG1196 400 AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 436 GIALGDKSPSR-LDAFVKTLEDDRDYYKRELEYLQKMIKRRPSPSRRSPEKSEDLRLITRERDELQSML-------DRFE 507
Cdd:COG1196 480 AELLEELAEAAaRLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALqnivvedDEVA 559
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 508 KHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLR----------------REAKHNLVSQSHVGEDGDASLADFRRLMA 571
Cdd:COG1196 560 AAAIEYLKAAKAGRATFLPLDKIRARAALAAALARgaigaavdlvasdlreADARYYVLGDTLLGRTLVAARLEAALRRA 639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 572 EKESLREKLK------IQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSD 645
Cdd:COG1196 640 VTLAGRLREVtlegegGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEE 719
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 646 DSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDE------LQSAQEEIVKLEEKIDRL 699
Cdd:COG1196 720 ELEEEALEEQLEAEREELLEELLEEEELLEEEALEElpeppdLEELERELERLEREIEAL 779
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
259-1024 |
8.06e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.16 E-value: 8.06e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 259 LESRSKSNEKLIAQLNLQVEYLQQSNKELENRIQDLLDTKKNVTSEvvhLSNKNEELCQELNEIDHLAQQLERhKEIVLE 338
Cdd:TIGR02169 200 LERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQ---LASLEEELEKLTEEISELEKRLEE-IEQLLE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 339 TADKEIGEA--------KKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLELLLNQLEQEKQRL 410
Cdd:TIGR02169 276 ELNKKIKDLgeeeqlrvKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKL 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 411 TEktenfEIKERELVLEIERMRLEYGIALGDKSPSRLDAFVKTLEDdrdyYKRELEYLQKMIKRRPSPSRRSPEKSEDLR 490
Cdd:TIGR02169 356 TE-----EYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEK----LKREINELKRELDRLQEELQRLSEELADLN 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 491 L--------ITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNIL---YEQSQSELNRLRREAKHNLVSQSHVGEDG 559
Cdd:TIGR02169 427 AaiagieakINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLkeeYDRVEKELSKLQRELAEAEAQARASEERV 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 560 ----------DASLADFRRLMAEKESLREKL--------------------------------------------KIQQE 585
Cdd:TIGR02169 507 rggraveevlKASIQGVHGTVAQLGSVGERYataievaagnrlnnvvveddavakeaiellkrrkagratflplnKMRDE 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 586 AANLEKSKMQHDISVLENNI---QQFE------------LERCELKSTISIlKERIKSLENELKLKSSKLIQTSDDSSql 650
Cdd:TIGR02169 587 RRDLSILSEDGVIGFAVDLVefdPKYEpafkyvfgdtlvVEDIEAARRLMG-KYRMVTLEGELFEKSGAMTGGSRAPR-- 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 651 kaelcSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDKEKDNLQET 730
Cdd:TIGR02169 664 -----GGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKER 738
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 731 VDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSS-----RDREISSLRRQLDASHTEIAE-TGRVKEIA 804
Cdd:TIGR02169 739 LEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDlearlSHSRIPEIQAELSKLEEEVSRiEARLREIE 818
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 805 LKENRRLQdDLATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHTqaedwEIK 884
Cdd:TIGR02169 819 QKLNRLTL-EKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKK-----ERD 892
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 885 AHQAEGESSSIRLELLSVDTDRrhLRERVELLEKEIqehmiahQAYESQISSItknmskleEDIKREHQDKSSVLADLTS 964
Cdd:TIGR02169 893 ELEAQLRELERKIEELEAQIEK--KRKRLSELKAKL-------EALEEELSEI--------EDPKGEDEEIPEEELSLED 955
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 965 VRELCVKLEASKDLLSRQLASKSMDYEKVLGELEDVKSEAELLKKQLSSERLTIQNLETL 1024
Cdd:TIGR02169 956 VQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
344-732 |
1.11e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 1.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 344 IGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLELLLNQLEQEKQRLTEKTENFEikERE 423
Cdd:TIGR02168 672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE--ERI 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 424 LVLEIERMRLEYGIALGDKSPSRLDAFVKTLEDDRDYYKRELEYLQkmikrrpspsrrspeksEDLRLITRERDELQSML 503
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK-----------------EELKALREALDELRAEL 812
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 504 DRFEKHMIEIQSNVKLLTAERDRLnilyEQSQSELNRLRREAKHNLVSQSHVGEDGDASLADFRRLMAEKESLREKLKIQ 583
Cdd:TIGR02168 813 TLLNEEAANLRERLESLERRIAAT----ERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEA 888
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 584 QEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLiqtSDDSSQLKAELCSLHLLNEQ 663
Cdd:TIGR02168 889 LALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL---SEEYSLTLEEAEALENKIED 965
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024501341 664 LQRTVEDLQHRLSLKKDEL----QSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDKE-KDNLQETVD 732
Cdd:TIGR02168 966 DEEEARRRLKRLENKIKELgpvnLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREaRERFKDTFD 1039
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
317-922 |
2.42e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 2.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 317 QELNEIDHLAQQLE-RHKEIVLETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKEN 395
Cdd:COG1196 220 EELKELEAELLLLKlRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 396 LELLLNQLEQEKQRLTEKTENFEIKERELVLEIERMRLEygialgdkspsrldafVKTLEDDRDYYKRELEYLQKMIKRR 475
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEE----------------LEELEEELEEAEEELEEAEAELAEA 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 476 PSPSRRSPEKSEDLRlitRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAKHNLVSQSHV 555
Cdd:COG1196 364 EEALLEAEAELAEAE---EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 556 GEDGDASLADFRRLMAEKESLREKLKIQQEAANLekskmqhdisvLENNIQQFELERCELKSTISILKERIKSLENELK- 634
Cdd:COG1196 441 EEALEEAAEEEAELEEEEEALLELLAELLEEAAL-----------LEAALAELLEELAEAAARLLLLLEAEADYEGFLEg 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 635 LKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLR 714
Cdd:COG1196 510 VKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALA 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 715 STITVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQldashtEI 794
Cdd:COG1196 590 AALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGS------LT 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 795 AETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRvhnyitevsrfesLIASKEKENQELLEKFRML 874
Cdd:COG1196 664 GGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAE-------------AEEERLEEELEEEALEEQL 730
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 2024501341 875 HTQAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQE 922
Cdd:COG1196 731 EAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
326-950 |
2.96e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 2.96e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 326 AQQLERHKEIVLETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELfgkaddkenlelllnqlEQ 405
Cdd:COG1196 209 AEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAEL-----------------EE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 406 EKQRLTEKTENFEIK-ERELVLEIERMRLEYGIALgdkspsrldafvktLEDDRDYYKRELEYLQKmikrrpspsrRSPE 484
Cdd:COG1196 272 LRLELEELELELEEAqAEEYELLAELARLEQDIAR--------------LEERRRELEERLEELEE----------ELAE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 485 KSEDLRLITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAkhnlvsqshvgedgdaslA 564
Cdd:COG1196 328 LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL------------------L 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 565 DFRRLMAEKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKlksskliQTS 644
Cdd:COG1196 390 EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE-------ALL 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 645 DDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQ--EEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDK 722
Cdd:COG1196 463 ELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEgfLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEA 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 723 EKDNLQETVDEKTEKIA--CLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRD--REISSLRRQLDASHTEIAETG 798
Cdd:COG1196 543 ALAAALQNIVVEDDEVAaaAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAavDLVASDLREADARYYVLGDTL 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 799 RVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRVhnyITEVSRFESLIASKEKENQELLEKFRMLHTQA 878
Cdd:COG1196 623 LGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSR---RELLAALLEAEAELEELAERLAEEELELEEAL 699
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024501341 879 EDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQEHMIAHQAYESQISSITKNMSKLEEDIKR 950
Cdd:COG1196 700 LAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELER 771
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
461-843 |
2.54e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.54 E-value: 2.54e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 461 YKRELEYLQKMIKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNR 540
Cdd:TIGR02169 669 SRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSS 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 541 LRREAkhnlvsqshvgEDGDASLADfrrLMAEKESLREKL-KIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTI 619
Cdd:TIGR02169 749 LEQEI-----------ENVKSELKE---LEARIEELEEDLhKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARL 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 620 SILKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRL 699
Cdd:TIGR02169 815 REIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDEL 894
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 700 NQKSTSQDEAVNVLRSTITVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTithlrltlSELESSTDQLKDLLSSRDRE 779
Cdd:TIGR02169 895 EAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEI--------PEEELSLEDVQAELQRVEEE 966
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024501341 780 ISSLRrqlDASHTEIAETgrvkEIALKENRRLQDDLATMTREnqavSSELEDAIREKEEMKTRV 843
Cdd:TIGR02169 967 IRALE---PVNMLAIQEY----EEVLKRLDELKEKRAKLEEE----RKAILERIEEYEKKKREV 1019
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
322-1061 |
9.85e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.61 E-value: 9.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 322 IDHLA--QQLERHKEIVLEtadkEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSE----ELFGKADDKEN 395
Cdd:TIGR02169 159 IDEIAgvAEFDRKKEKALE----ELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEkreyEGYELLKEKEA 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 396 LELLLNQLEQEKQRLTEKTENFEIKERELVLEIERMRLEYgialgdkspSRLDAFVKTL-EDDRDYYKRELEYLQKMIKR 474
Cdd:TIGR02169 235 LERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLL---------EELNKKIKDLgEEEQLRVKEKIGELEAEIAS 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 475 RPSPSRRSPEKSEDLRlitRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAkhnlvsqsh 554
Cdd:TIGR02169 306 LERSIAEKERELEDAE---ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAEL--------- 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 555 vgEDGDaslADFRRLMAEKESLREKLkiqqEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELK 634
Cdd:TIGR02169 374 --EEVD---KEFAETRDELKDYREKL----EKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKE 444
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 635 LKSSKLIQTSDDSSQLKAELcslhllnEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLR 714
Cdd:TIGR02169 445 DKALEIKKQEWKLEQLAADL-------SKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLK 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 715 S-------TITVLDKEKDNLQ----------------ETVDEKTEKIACLDDNLA--------NKEKTiTHLRLTLSELE 763
Cdd:TIGR02169 518 AsiqgvhgTVAQLGSVGERYAtaievaagnrlnnvvvEDDAVAKEAIELLKRRKAgratflplNKMRD-ERRDLSILSED 596
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 764 SSTDQLKDLLSSRDR----------------EISSLRRQLDASHT-----EIAE-----TG--RVKEIALKENRRLQDDL 815
Cdd:TIGR02169 597 GVIGFAVDLVEFDPKyepafkyvfgdtlvveDIEAARRLMGKYRMvtlegELFEksgamTGgsRAPRGGILFSRSEPAEL 676
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 816 ATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHTQAEDWEIKAHQAEGESSSI 895
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENV 756
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 896 RLELLSVDTDRRHLRERVELLEKEIQ--EHMIAHQ----------AYESQISSITKNMSKLEEDIKREHQDKSSVLADLT 963
Cdd:TIGR02169 757 KSELKELEARIEELEEDLHKLEEALNdlEARLSHSripeiqaelsKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQ 836
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 964 SVRELCVKLEASKDLLSRQLASKSMDYEKVLGELEDVKSEAELLKKQLSSERLTIQNLETLLATSRDKEFQNHLTSHEKD 1043
Cdd:TIGR02169 837 ELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKR 916
|
810
....*....|....*...
gi 2024501341 1044 SEIQLLKDKLTLAEGKLA 1061
Cdd:TIGR02169 917 KRLSELKAKLEALEEELS 934
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
195-842 |
2.76e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.94 E-value: 2.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 195 IADLLQVADNRIQELQSEVTQLQEKLEISENGKKnysKQVELRDKEIERLMLALDGgRSHEVISLESRSKSNEKLIAQLN 274
Cdd:COG1196 191 LEDILGELERQLEPLERQAEKAERYRELKEELKE---LEAELLLLKLRELEAELEE-LEAELEELEAELEELEAELAELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 275 LQVEYLQQSNKELENRIQDLLDTKKNVTSEVVHLSNKNEELCQELN----EIDHLAQQLERhkeivletADKEIGEAKKE 350
Cdd:COG1196 267 AELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRReleeRLEELEEELAE--------LEEELEELEEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 351 IERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLELLLNQLEQEKQRLTEKTENFEIKERELVLEIER 430
Cdd:COG1196 339 LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLER 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 431 MRLEYgialgdkspSRLDAFVKTLEDDRDyykRELEYLQKMIKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFEKHM 510
Cdd:COG1196 419 LEEEL---------EELEEALAELEEEEE---EEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 511 IEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAKHNLVSQSHVGEDGDASLADFRRLMAEKESLREKLKIQQEAANLE 590
Cdd:COG1196 487 AEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYL 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 591 KSKMQHDISVLENNIQQFELERCELKSTISILKERI------KSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQL 664
Cdd:COG1196 567 KAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDlvasdlREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRL 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 665 QRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDKEKDNLQETVDEKTEKIACLDDN 744
Cdd:COG1196 647 REVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEAL 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 745 LANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQA 824
Cdd:COG1196 727 EEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGPVNLLAIEEYEELEERYDFLSEQRED 806
|
650 660
....*....|....*....|..
gi 2024501341 825 VSSE---LEDAIRE-KEEMKTR 842
Cdd:COG1196 807 LEEAretLEEAIEEiDRETRER 828
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
253-1030 |
5.37e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 53.97 E-value: 5.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 253 SHEVISLESRSKSNEKLIAQlnlQVEYLQQSNKELENRIQDLLDTKKNVTSEVVHLSNKNEELCQELNEIDHLAQQLERH 332
Cdd:pfam15921 84 SHQVKDLQRRLNESNELHEK---QKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCL 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 333 KEIVLETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELF---GKADDKENLELLLNQLEQeKQR 409
Cdd:pfam15921 161 KEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFrslGSAISKILRELDTEISYL-KGR 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 410 LTEKTENFEI------KERELVLEIERMRLEYGIALGDKSPSRLDAFVKTLEDDRDYYKRELEYLQKMIKRRPSPSRRSP 483
Cdd:pfam15921 240 IFPVEDQLEAlksesqNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQL 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 484 EKSED----LRLITRERDEL-QSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAkHNLVSQSHVGED 558
Cdd:pfam15921 320 SDLEStvsqLRSELREAKRMyEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADL-HKREKELSLEKE 398
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 559 GDASLADfrRLMAEKESLrEKLKIQQEAANLEKSKMQHDISVLENNIQQfelercELKSTISILKERIKSLENELKLkSS 638
Cdd:pfam15921 399 QNKRLWD--RDTGNSITI-DHLRRELDDRNMEVQRLEALLKAMKSECQG------QMERQMAAIQGKNESLEKVSSL-TA 468
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 639 KLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKID----RLNQKSTSQDEAVNVLR 714
Cdd:pfam15921 469 QLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDlklqELQHLKNEGDHLRNVQT 548
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 715 S-------------TITVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESstdqLKDLLSSRDREIS 781
Cdd:pfam15921 549 EcealklqmaekdkVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKI----LKDKKDAKIRELE 624
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 782 SLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATmtrENQAVSSELEDAIREKEEMKTRVHNyitevsrfesliasKE 861
Cdd:pfam15921 625 ARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLN---EVKTSRNELNSLSEDYEVLKRNFRN--------------KS 687
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 862 KENQELLEKFRMlhtqaedwEIKAHQAEGESSsiRLELLSVDTDRRHLRERVELLEKEIqehmiahQAYESQISSITKNM 941
Cdd:pfam15921 688 EEMETTTNKLKM--------QLKSAQSELEQT--RNTLKSMEGSDGHAMKVAMGMQKQI-------TAKRGQIDALQSKI 750
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 942 SKLEEDIKREHQDKSSvladltsvrelcvkLEASKDLLSRQLASKSMDYEKVLGELEDVKSEAELLKKQLSSERLTIQNL 1021
Cdd:pfam15921 751 QFLEEAMTNANKEKHF--------------LKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKA 816
|
....*....
gi 2024501341 1022 ETLLATSRD 1030
Cdd:pfam15921 817 SLQFAECQD 825
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
662-870 |
6.23e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.84 E-value: 6.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 662 EQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDKEKDNLQETVDEKTEKIACL 741
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 742 DDNLAN------KEKTITHLRLTLS-----ELESSTDQLKDLLSSRDREISSLRRQ---LDASHTEIAETGRVKEIALKE 807
Cdd:COG4942 103 KEELAEllralyRLGRQPPLALLLSpedflDAVRRLQYLKYLAPARREQAEELRADlaeLAALRAELEAERAELEALLAE 182
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024501341 808 NRRLQDDLATMTRENQAVSSELEdaiREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEK 870
Cdd:COG4942 183 LEEERAALEALKAERQKLLARLE---KELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
196-803 |
9.62e-07 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 52.98 E-value: 9.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 196 ADLLQVADNRIQELQSEVTQLQEKLEISENGKKNYSKQVElRDKEIERLMLaldggRSHEVISLESRSKSNEKLIAQLNL 275
Cdd:PRK01156 168 YDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIA-DDEKSHSITL-----KEIERLSIEYNNAMDDYNNLKSAL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 276 QVeylQQSNKELENRIQDLLDTKKNVTSEVVHLSNKNEELCQELNEIDHLAQQLERHKEIVLETADKEIGEAKKEIERKD 355
Cdd:PRK01156 242 NE---LSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNID 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 356 SEIQDLEETITRLkSELSSCRRQNERLSEELfgkaDDKENLELLLNQLEQEKQRLTEKTENFEIKERELVLEIERMRLEY 435
Cdd:PRK01156 319 AEINKYHAIIKKL-SVLQKDYNDYIKKKSRY----DDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFI 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 436 GIALGDK--SPSRLDAFVKTLEDDRDYYKRELEYLQKMIKRRPSPSRRSPEKSEDLR---------------LITRERDE 498
Cdd:PRK01156 394 SEILKIQeiDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNgqsvcpvcgttlgeeKSNHIINH 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 499 LQSMLDRFEKHMIEIQSNVKLLTAERDRLnilyeqsQSELNRLRREAKHNLVSQSHVGEDGDASLADFRRLMAEkesLRE 578
Cdd:PRK01156 474 YNEKKSRLEEKIREIEIEVKDIDEKIVDL-------KKRKEYLESEEINKSINEYNKIESARADLEDIKIKINE---LKD 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 579 KLKIQQEAANLEKSKmqhDISVLENNIQQFeLERCELKSTISIlkERIKSLENElklKSSKLIQTSDDSSQLKAELCSLH 658
Cdd:PRK01156 544 KHDKYEEIKNRYKSL---KLEDLDSKRTSW-LNALAVISLIDI--ETNRSRSNE---IKKQLNDLESRLQEIEIGFPDDK 614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 659 LLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKSTsqdeavnvlrstitvldkEKDNLQETVDEKTEKI 738
Cdd:PRK01156 615 SYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIA------------------EIDSIIPDLKEITSRI 676
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024501341 739 ACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDASHTEIAETGRVKEI 803
Cdd:PRK01156 677 NDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKKIKKAIGDLKRL 741
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
313-820 |
1.06e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 52.98 E-value: 1.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 313 EELCQELNEIDHLAQQLERHKEIV--LETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKA 390
Cdd:PRK01156 152 KKILDEILEINSLERNYDKLKDVIdmLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAM 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 391 DDKENLELLLNQLEQEKQrlTEKTENFEIKERELVLEIERMRLEYGIALGDKSPSRL-DAFVKTLEDDRDY--YKRELEY 467
Cdd:PRK01156 232 DDYNNLKSALNELSSLED--MKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIInDPVYKNRNYINDYfkYKNDIEN 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 468 LQKMIKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFE--KHMI----EIQSNVKLLTAERDRLNILYEQSQSELNRL 541
Cdd:PRK01156 310 KKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSRYDdlNNQIleleGYEMDYNSYLKSIESLKKKIEEYSKNIERM 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 542 RREAKHNLVSQSHVGEDGDASLADFRR-----------LMAEKESLREKLKIQQEAANL--------------------- 589
Cdd:PRK01156 390 SAFISEILKIQEIDPDAIKKELNEINVklqdisskvssLNQRIRALRENLDELSRNMEMlngqsvcpvcgttlgeeksnh 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 590 -------EKSKMQHDISVLENNIQQFELERCELKSTISIL-KERIKSLENELKLKSSKLIQTSDD-------------SS 648
Cdd:PRK01156 470 iinhyneKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLeSEEINKSINEYNKIESARADLEDIkikinelkdkhdkYE 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 649 QLKAELCSLHLLNEQLQRT--VEDLQHRLSLKKDELQSAQEEIVK-LEEKIDRLNQKSTSQDEAVNVLRSTITVLDKEKD 725
Cdd:PRK01156 550 EIKNRYKSLKLEDLDSKRTswLNALAVISLIDIETNRSRSNEIKKqLNDLESRLQEIEIGFPDDKSYIDKSIREIENEAN 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 726 NLQETVDEKTEKIACLDDnlanKEKTITHLRLTLSELESSTDQLKDL---LSSRDREISSLRRQLDASHTEIAETGRVKE 802
Cdd:PRK01156 630 NLNNKYNEIQENKILIEK----LRGKIDNYKKQIAEIDSIIPDLKEItsrINDIEDNLKKSRKALDDAKANRARLESTIE 705
|
570
....*....|....*...
gi 2024501341 803 IALKENRRLQDDLATMTR 820
Cdd:PRK01156 706 ILRTRINELSDRINDINE 723
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
630-835 |
1.19e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 52.14 E-value: 1.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 630 ENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQK------- 702
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREElgerara 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 703 ----------------STSQDEAVNVLRSTITVLDKEKDNLQETVDEKTEkiacLDDNLANKEKTITHLRLTLSELESST 766
Cdd:COG3883 95 lyrsggsvsyldvllgSESFSDFLDRLSALSKIADADADLLEELKADKAE----LEAKKAELEAKLAELEALKAELEAAK 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2024501341 767 DQLKDLLSSRDREISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIRE 835
Cdd:COG3883 171 AELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 239
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
675-870 |
1.32e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 52.14 E-value: 1.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 675 LSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDKEKDNLQETVDEKTEKIACLDDNLANkektitH 754
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGE------R 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 755 LRlTLSELESSTDQLKDLLSSRD-----REISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSEL 829
Cdd:COG3883 92 AR-ALYRSGGSVSYLDVLLGSESfsdflDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAK 170
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2024501341 830 EDAIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEK 870
Cdd:COG3883 171 AELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
452-1012 |
1.69e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.37 E-value: 1.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 452 KTLEDDRDYYKRELEYLQKMIKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILY 531
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 532 EQSQSELNRLR---------REAKHNLVSQSHVGEDGDASLADFRRLMAEKESLRE-KLKIQQEAANLEK--SKMQHDIS 599
Cdd:PRK03918 245 KELESLEGSKRkleekirelEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEfYEEYLDELREIEKrlSRLEEEIN 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 600 VLENNIQQFElercELKSTISILKERIKSLENELKlKSSKLIQTSDDSSQLKAELCSLHllNEQLQRTVEDLQHRLSLKK 679
Cdd:PRK03918 325 GIEERIKELE----EKEERLEELKKKLKELEKRLE-ELEERHELYEEAKAKKEELERLK--KRLTGLTPEKLEKELEELE 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 680 DELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDKEKDNLQEtvDEKTEKIACLDDNLANKEKTITHLRLTL 759
Cdd:PRK03918 398 KAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTE--EHRKELLEEYTAELKRIEKELKEIEEKE 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 760 SELESSTDQLKDLLsSRDREISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEM 839
Cdd:PRK03918 476 RKLRKELRELEKVL-KKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEEL 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 840 KTRVHNYITEVSRFESLIASKEKENQEL-LEKFRMLHTQAEDWEiKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEK 918
Cdd:PRK03918 555 KKKLAELEKKLDELEEELAELLKELEELgFESVEELEERLKELE-PFYNEYLELKDAEKELEREEKELKKLEEELDKAFE 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 919 EIQEHMIAHQAYESQISSITKNMSKLE-EDIKREHQDKSSVLADLTSvrelcvKLEASKDLLsRQLASKSMDYEKVLGEL 997
Cdd:PRK03918 634 ELAETEKRLEELRKELEELEKKYSEEEyEELREEYLELSRELAGLRA------ELEELEKRR-EEIKKTLEKLKEELEER 706
|
570
....*....|....*
gi 2024501341 998 EDVKSEAELLKKQLS 1012
Cdd:PRK03918 707 EKAKKELEKLEKALE 721
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
563-1022 |
2.58e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 51.71 E-value: 2.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 563 LADFRRLMAEKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELER-------CELKSTISILKERIKSLeNELKL 635
Cdd:pfam01576 105 IQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERklleeriSEFTSNLAEEEEKAKSL-SKLKN 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 636 KSSKLIQTSDD---------------SSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVK-------LE 693
Cdd:pfam01576 184 KHEAMISDLEErlkkeekgrqelekaKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEetaqknnAL 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 694 EKIDRLNQKSTSQDEAVNVLRSTITVLDKEKDNLQETVDE-KTEKIACLDDNLAN------KEKTITHLRLTLSELESST 766
Cdd:pfam01576 264 KKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEAlKTELEDTLDTTAAQqelrskREQEVTELKKALEEETRSH 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 767 D-QLKDLLSSRDREISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTREN--------------QAVSSELED 831
Cdd:pfam01576 344 EaQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKqdsehkrkklegqlQELQARLSE 423
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 832 AIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHTQAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRE 911
Cdd:pfam01576 424 SERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQE 503
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 912 RVEllekeiqEHMIAHQAYESQISSITKNMSkleeDIKREHQDKSSVLADLTSVRElcvKLEASKDLLSRQLASKSMDYE 991
Cdd:pfam01576 504 QLE-------EEEEAKRNVERQLSTLQAQLS----DMKKKLEEDAGTLEALEEGKK---RLQRELEALTQQLEEKAAAYD 569
|
490 500 510
....*....|....*....|....*....|.
gi 2024501341 992 KVLGELEDVKSEAELLKKQLSSERLTIQNLE 1022
Cdd:pfam01576 570 KLEKTKNRLQQELDDLLVDLDHQRQLVSNLE 600
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
285-1031 |
2.73e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 51.97 E-value: 2.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 285 KELENRIQDLLDTKKNVTS---EVVHLSNKNEELCQELNEIDHLAQQLERHKEIV--LETADKEIGEAKKEIERKDSEIQ 359
Cdd:TIGR00606 186 KALETLRQVRQTQGQKVQEhqmELKYLKQYKEKACEIRDQITSKEAQLESSREIVksYENELDPLKNRLKEIEHNLSKIM 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 360 DLEETITRLKS---ELSSCRRQNERLSEELFGKADDKENL-----ELLLNQLEQEKQRLTEKTENFEIKERELVLEIERM 431
Cdd:TIGR00606 266 KLDNEIKALKSrkkQMEKDNSELELKMEKVFQGTDEQLNDlyhnhQRTVREKERELVDCQRELEKLNKERRLLNQEKTEL 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 432 RLEYGIALGDKSPSRLDAFVKTLEDDRDYYKRELEYLQK----MIKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFE 507
Cdd:TIGR00606 346 LVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERgpfsERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQ 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 508 KHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAKHNLVSQSHVGEDGDASLADFRRL-MAEKESLREKLKIQQEA 586
Cdd:TIGR00606 426 EQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELsKAEKNSLTETLKKEVKS 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 587 ANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSskliQTSDDSSQLKAELCSlhllNEQLQR 666
Cdd:TIGR00606 506 LQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKS----RHSDELTSLLGYFPN----KKQLED 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 667 TVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTI------TVLDKEKDNLQETVDEKTEKIAC 740
Cdd:TIGR00606 578 WLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLfdvcgsQDEESDLERLKEEIEKSSKQRAM 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 741 LDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDASHTEIAETGrvKEIALKENRRlqddlATMTR 820
Cdd:TIGR00606 658 LAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTE--SELKKKEKRR-----DEMLG 730
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 821 ENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHTQAEDWEI-KAHQAEGESSSIRLEL 899
Cdd:TIGR00606 731 LAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTImERFQMELKDVERKIAQ 810
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 900 LSVDTDRRHLRERVELLEKEIQEhmiaHQAYESQISSITKNMSKLEEDIKREHQDKSSVLADLTSVRELCVKLEASKDLL 979
Cdd:TIGR00606 811 QAAKLQGSDLDRTVQQVNQEKQE----KQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQF 886
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*.
gi 2024501341 980 SRQLASKSMDYEKVLGELEDVKSE----AELLKKQLSSERLTIQNLETLLATSRDK 1031
Cdd:TIGR00606 887 EEQLVELSTEVQSLIREIKDAKEQdsplETFLEKDQQEKEELISSKETSNKKAQDK 942
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
586-799 |
3.58e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 3.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 586 AANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQ 665
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 666 RTVEDLQHRLSLKKDELQS-----------AQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDKEKDNLQETVDEK 734
Cdd:COG4942 97 AELEAQKEELAELLRALYRlgrqpplalllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024501341 735 TEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDASHTEIAETGR 799
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
205-952 |
3.99e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 51.20 E-value: 3.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 205 RIQELQSEVTQLQEKLEISENGKKNYSKQVELRDKEIERLMLALDGGRSHEVISLESRSKSNEKLIAQLNLQVEYLQQSN 284
Cdd:TIGR00606 263 KIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEK 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 285 KELENRIQDLLDTKKNVTSEVVHLSNKNEELC--QELNEIDHLA---QQLERHKEIVLETADKEIGEAKKEIERKDSEIQ 359
Cdd:TIGR00606 343 TELLVEQGRLQLQADRHQEHIRARDSLIQSLAtrLELDGFERGPfseRQIKNFHTLVIERQEDEAKTAAQLCADLQSKER 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 360 DLEETITRLKSELSSCRRQNERLSEELFGKADDKENLELLLNQLEQEKQRLTEKTENFEIKERELVLEIERMRLEYGIAl 439
Cdd:TIGR00606 423 LKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKK- 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 440 GDKSPSRLDAFVKTLEDDRDYYKRELEYLQKMIKRRPSPSRRSPEKSEDLRLI-TRERDELQSMLDRF------EKHMIE 512
Cdd:TIGR00606 502 EVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIkSRHSDELTSLLGYFpnkkqlEDWLHS 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 513 IQSNVKLLTAERDRLNILYEQSQSELNRLRREAKHNLVSQSHVGED------GDASLADFRRLMAEKESLREKLKIQQEA 586
Cdd:TIGR00606 582 KSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKlfdvcgSQDEESDLERLKEEIEKSSKQRAMLAGA 661
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 587 ANL------------------------EKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSL-------ENELKL 635
Cdd:TIGR00606 662 TAVysqfitqltdenqsccpvcqrvfqTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMlglapgrQSIIDL 741
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 636 KSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDEL------QSAQEEIVKLEEKIDRLNQKSTSQDea 709
Cdd:TIGR00606 742 KEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLtdvtimERFQMELKDVERKIAQQAAKLQGSD-- 819
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 710 vnvLRSTITVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRD----------RE 779
Cdd:TIGR00606 820 ---LDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQqfeeqlvelsTE 896
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 780 ISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSrfESLIAS 859
Cdd:TIGR00606 897 VQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGK--DDYLKQ 974
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 860 KEKENQELLEKFRMLHTQAEDWE--IKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQEHMiaHQAYESQISSI 937
Cdd:TIGR00606 975 KETELNTVNAQLEECEKHQEKINedMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHL--KEMGQMQVLQM 1052
|
810
....*....|....*...
gi 2024501341 938 TKNMSKLEED---IKREH 952
Cdd:TIGR00606 1053 KQEHQKLEENidlIKRNH 1070
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
622-828 |
6.31e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 6.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 622 LKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLN- 700
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKe 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 701 ---------QKSTSQDEAVNVLRST--------ITVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELE 763
Cdd:COG4942 105 elaellralYRLGRQPPLALLLSPEdfldavrrLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELE 184
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024501341 764 SSTDQLKDLLSSRDREISSLRRQLDASHTEIAEtgrvkeiALKENRRLQDDLATMTRENQAVSSE 828
Cdd:COG4942 185 EERAALEALKAERQKLLARLEKELAELAAELAE-------LQQEAEELEALIARLEAEAAAAAER 242
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
759-1030 |
6.82e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.42 E-value: 6.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 759 LSELESSTDQLKDLLSsrDREISSLRRQLDASHTEIAETGrvKEIALKENRRLQddlATMTREnqavssELEDAIREKEE 838
Cdd:PRK02224 182 LSDQRGSLDQLKAQIE--EKEEKDLHERLNGLESELAELD--EEIERYEEQREQ---ARETRD------EADEVLEEHEE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 839 MKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHTQAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEK 918
Cdd:PRK02224 249 RREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRD 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 919 EIQEHMIAHQAYESQISSITKNMSKLEEDIKREHQDKSSVLADLTSVRELCVKLEASKDLLSRQLASKSMDYEKVLGELE 998
Cdd:PRK02224 329 RLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLG 408
|
250 260 270
....*....|....*....|....*....|..
gi 2024501341 999 DVKSEAELLKKQLSSERLTIQNLETLLATSRD 1030
Cdd:PRK02224 409 NAEDFLEELREERDELREREAELEATLRTARE 440
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
320-843 |
1.13e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 49.68 E-value: 1.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 320 NEIDHLAQQLERHKEIvletaDKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLsEELFGKADDKenlELL 399
Cdd:PRK03918 176 RRIERLEKFIKRTENI-----EELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEL-EELKEEIEEL---EKE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 400 LNQLEQEKQRLTEKTENFEIKERELVLEIERMRLEYG----IALGDKSPSRLDAFVKTLEDDRDYYKRELEYLQKMIKRR 475
Cdd:PRK03918 247 LESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKelkeLKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGI 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 476 PSPSRRSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQsNVKLLTAERDRLNilYEQSQSELNRLRREAKHNLVSQSHV 555
Cdd:PRK03918 327 EERIKELEEKEERLEELKKKLKELEKRLEELEERHELYE-EAKAKKEELERLK--KRLTGLTPEKLEKELEELEKAKEEI 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 556 GEDGDASLADFRRLMAEKESLR---EKLKIQQEAANLEKSKMQHDISvlENNIQQFELERCELKSTISILKERIKSLENE 632
Cdd:PRK03918 404 EEEISKITARIGELKKEIKELKkaiEELKKAKGKCPVCGRELTEEHR--KELLEEYTAELKRIEKELKEIEEKERKLRKE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 633 LKLKSSKLIQTSddssqlkaELCSLHLLNEQLQRTVEDLQhrlSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNV 712
Cdd:PRK03918 482 LRELEKVLKKES--------ELIKLKELAEQLKELEEKLK---KYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEK 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 713 LRStitvLDKEKDNLQETVDEKTEKIACLDDNLANKE-KTITHLRLTLSELESSTDQLKDLLSSRDR------EISSLRR 785
Cdd:PRK03918 551 LEE----LKKKLAELEKKLDELEEELAELLKELEELGfESVEELEERLKELEPFYNEYLELKDAEKElereekELKKLEE 626
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024501341 786 QLDASHTEIAETGRV-----KEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRV 843
Cdd:PRK03918 627 ELDKAFEELAETEKRleelrKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRR 689
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
456-685 |
1.81e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 1.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 456 DDRDYYKRELEYLQKMIKRRPSPSRRSPEK----SEDLRLITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILY 531
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEekalLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 532 EQSQSELNRLRREA-KHNLVSQSHVGEDGDASLADFRRLMAEKESLREklkIQQEAANLEKskmqhDISVLENNIQQFEL 610
Cdd:COG4942 100 EAQKEELAELLRALyRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPA---RREQAEELRA-----DLAELAALRAELEA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024501341 611 ERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSA 685
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
573-922 |
1.90e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 48.66 E-value: 1.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 573 KESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKA 652
Cdd:pfam10174 301 KESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKSTLAG 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 653 ELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDKEKDNLQETVD 732
Cdd:pfam10174 381 EIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQRE 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 733 ----EKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSS---------------------RDREISSLRRQL 787
Cdd:pfam10174 461 redrERLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSlassglkkdsklksleiaveqKKEECSKLENQL 540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 788 DASHtEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKENQEL 867
Cdd:pfam10174 541 KKAH-NAEEAVRTNPEINDRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAELESLTLRQMKEQNKK 619
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 2024501341 868 LEKFRMLHTQaedwEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQE 922
Cdd:pfam10174 620 VANIKHGQQE----MKKKGAQLLEEARRREDNLADNSQQLQLEELMGALEKTRQE 670
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
627-1053 |
2.72e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 48.54 E-value: 2.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 627 KSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVedlqhrlslkKDELQSAQEEIVKLEEKIDRLNQKSTSQ 706
Cdd:COG5022 785 RLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTI----------KREKKLRETEEVEFSLKAEVLIQKFGRS 854
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 707 DEAVNVLRSTI--TVLDKEKDNLQETVDEKTEKiacLDDNlankeKTITHLRLTLSELESSTDQLKDLLSSRDREISSLR 784
Cdd:COG5022 855 LKAKKRFSLLKkeTIYLQSAQRVELAERQLQEL---KIDV-----KSISSLKLVNLELESEIIELKKSLSSDLIENLEFK 926
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 785 RQLDASHTEIAETGRVKEIALKE---NRRLQDDLATMTRENQAvSSELEDAIREKEEMKTRVHNYITEVSRFESLIASKE 861
Cdd:COG5022 927 TELIARLKKLLNNIDLEEGPSIEyvkLPELNKLHEVESKLKET-SEEYEDLLKKSTILVREGNKANSELKNFKKELAELS 1005
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 862 KENQELLEKFRML-HTQAEDWEIKAHQAEGES-SSIRLELLSVDTDRRHLRERVELLEKEIQE--------HMIAHQAYE 931
Cdd:COG5022 1006 KQYGALQESTKQLkELPVEVAELQSASKIISSeSTELSILKPLQKLKGLLLLENNQLQARYKAlklrrensLLDDKQLYQ 1085
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 932 SQissITKNMSKLEEDIKREHQDKSSVLadLTSVRELCVKLEASKDLLSRQ---LASKSMDYEKVLGELEDVKSEAELLK 1008
Cdd:COG5022 1086 LE---STENLLKTINVKDLEVTNRNLVK--PANVLQFIVAQMIKLNLLQEIskfLSQLVNTLEPVFQKLSVLQLELDGLF 1160
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 2024501341 1009 KQLSSERLTiqNLETLLATSRDKEFQNHLT---SHEKDSEIQLLKDKL 1053
Cdd:COG5022 1161 WEANLEALP--SPPPFAALSEKRLYQSALYdekSKLSSSEVNDLKNEL 1206
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
235-386 |
4.19e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 47.55 E-value: 4.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 235 ELRDKEIERLMLALDGGRSHEVISLESrsksNEKLIAQLNLQVEYLQQSNKELENRIQDLLDTkknvtsevvhlsnkNEE 314
Cdd:COG2433 384 ELIEKELPEEEPEAEREKEHEERELTE----EEEEIRRLEEQVERLEAEVEELEAELEEKDER--------------IER 445
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024501341 315 LCQELNEIdhlaqQLERHKEIvletadkeigeakkeieRKDSEIQDLEETITRLKSELSSCRRQNERLSEEL 386
Cdd:COG2433 446 LERELSEA-----RSEERREI-----------------RKDREISRLDREIERLERELEEERERIEELKRKL 495
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
204-778 |
6.31e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.37 E-value: 6.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 204 NRIQELQSEVTQLQEKLEISENGKKNYSKQVElrdkeierlmlaldggrshevislesrsksnekLIAQLNLQVEYLQQS 283
Cdd:PRK03918 207 REINEISSELPELREELEKLEKEVKELEELKE---------------------------------EIEELEKELESLEGS 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 284 NKELENRIQDLLDTKKNVTSEVVHLsnknEELCQELNEIDHLAQQLERHKEIVLETADKEiGEAKKEIERKDSEIQDLEE 363
Cdd:PRK03918 254 KRKLEEKIRELEERIEELKKEIEEL----EEKVKELKELKEKAEEYIKLSEFYEEYLDEL-REIEKRLSRLEEEINGIEE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 364 TItrlkSELSSCRRQNERLSEELfgkaddkenlelllNQLEQEKQRLTEKTENFEiKERELVLEIERMRLEygiaLGDKS 443
Cdd:PRK03918 329 RI----KELEEKEERLEELKKKL--------------KELEKRLEELEERHELYE-EAKAKKEELERLKKR----LTGLT 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 444 PSRLdafvktleddrdyyKRELEYLQKmikrrpspsrRSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQSN------V 517
Cdd:PRK03918 386 PEKL--------------EKELEELEK----------AKEEIEEEISKITARIGELKKEIKELKKAIEELKKAkgkcpvC 441
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 518 KLLTAERDRLNILYEQSqSELNRLRREAKhnlvSQSHVGEDGDASLADFRRLMAEKESLREKLKIQQEAANLEKSKMQHD 597
Cdd:PRK03918 442 GRELTEEHRKELLEEYT-AELKRIEKELK----EIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYN 516
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 598 ISVLENNIQQFEL---ERCELKSTISILKERIKSLEnELKLKSSKLIQTSDDSSQLKAELcsLHLLNEQLQRTVEDLQHR 674
Cdd:PRK03918 517 LEELEKKAEEYEKlkeKLIKLKGEIKSLKKELEKLE-ELKKKLAELEKKLDELEEELAEL--LKELEELGFESVEELEER 593
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 675 L-----------SLK--KDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDKEKDnlQETVDEKTEKIACL 741
Cdd:PRK03918 594 LkelepfyneylELKdaEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYS--EEEYEELREEYLEL 671
|
570 580 590
....*....|....*....|....*....|....*..
gi 2024501341 742 DDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDR 778
Cdd:PRK03918 672 SRELAGLRAELEELEKRREEIKKTLEKLKEELEEREK 708
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
65-838 |
7.17e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.98 E-value: 7.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 65 DAIIEPYKTETAKLTRENNEL--HLEVLKLKEQSD-----HHIKDLKASLRRAENEAADLRFLNNQYVHKIKLLEKESKA 137
Cdd:TIGR02169 190 DLIIDEKRQQLERLRREREKAerYQALLKEKREYEgyellKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 138 KTEKIQQLQEKnlqaVVQTPGGRKRNIPFRRQRMQIDQPVPPSAVSAYpvpqpedpyiADLLQVADNRIQELQSEVTQLQ 217
Cdd:TIGR02169 270 IEQLLEELNKK----IKDLGEEEQLRVKEKIGELEAEIASLERSIAEK----------ERELEDAEERLAKLEAEIDKLL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 218 EKLEISENGKKNYSKQVELRDKEIERLMLALDGGRShEVISLESRSKSNEKLIAQLNLQVEYLQQSNKELENRIQDLLDT 297
Cdd:TIGR02169 336 AEIEELEREIEEERKRRDKLTEEYAELKEELEDLRA-ELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEE 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 298 KKNVTSEVVHLSNKNEELCQELNE-----------IDHLAQQLERHKEIvLETADKEIGEAK-------KEIERKDSEIQ 359
Cdd:TIGR02169 415 LQRLSEELADLNAAIAGIEAKINEleeekedkaleIKKQEWKLEQLAAD-LSKYEQELYDLKeeydrveKELSKLQRELA 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 360 DLEETITRLKSELSSCRRQNERLSEELFGKADdkenlelllnqleqekqrltektenfeikereLVLEIERMRLEYGIAL 439
Cdd:TIGR02169 494 EAEAQARASEERVRGGRAVEEVLKASIQGVHG--------------------------------TVAQLGSVGERYATAI 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 440 GDKSPSRLDAFVKtleDDRDYYKRELEYLQ-------------KMIKRRPSPSRRSPEKSEDLRLITRERDE-------- 498
Cdd:TIGR02169 542 EVAAGNRLNNVVV---EDDAVAKEAIELLKrrkagratflplnKMRDERRDLSILSEDGVIGFAVDLVEFDPkyepafky 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 499 ------LQSMLDRFEKHMIeiqsNVKLLTAERDrlniLYEQSQSELNRLRREAKHNLVSQShvgedGDASLADFRRLMAE 572
Cdd:TIGR02169 619 vfgdtlVVEDIEAARRLMG----KYRMVTLEGE----LFEKSGAMTGGSRAPRGGILFSRS-----EPAELQRLRERLEG 685
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 573 KESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKA 652
Cdd:TIGR02169 686 LKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEA 765
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 653 ELCSLHLLNEQLQRTVEDLQHRLSlkKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDKEKDNLQETVD 732
Cdd:TIGR02169 766 RIEELEEDLHKLEEALNDLEARLS--HSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRI 843
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 733 EKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDASHTEIAETgrvkEIALKENRRLQ 812
Cdd:TIGR02169 844 DLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL----EAQIEKKRKRL 919
|
810 820
....*....|....*....|....*.
gi 2024501341 813 DDLATMTRENQAVSSELEDAIREKEE 838
Cdd:TIGR02169 920 SELKAKLEALEEELSEIEDPKGEDEE 945
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
571-768 |
7.33e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.36 E-value: 7.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 571 AEKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLI-------QT 643
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGeraralyRS 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 644 SDDSSQLKAelcslhLLNeqlQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDKE 723
Cdd:COG3883 99 GGSVSYLDV------LLG---SESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAA 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2024501341 724 KDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQ 768
Cdd:COG3883 170 KAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAA 214
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
589-846 |
1.04e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 589 LEKSKMQHDISVLENNIQQFElercELKSTISILKERIKSLEnELKLKSSKLIQTSDDSSQLKAELcslhllneqLQRTV 668
Cdd:COG4913 218 LEEPDTFEAADALVEHFDDLE----RAHEALEDAREQIELLE-PIRELAERYAAARERLAELEYLR---------AALRL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 669 EDLQHRLSLKKDELQSAQEEIVKLEEKIDRLnqkstsqdeavnvlrstitvlDKEKDNLQETVDEKTEKIACLD-DNLAN 747
Cdd:COG4913 284 WFAQRRLELLEAELEELRAELARLEAELERL---------------------EARLDALREELDELEAQIRGNGgDRLEQ 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 748 KEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDASHTEIAETgrvKEIALKENRRLQDDLATMTRENQAVSS 827
Cdd:COG4913 343 LEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAAL---LEALEEELEALEEALAEAEAALRDLRR 419
|
250
....*....|....*....
gi 2024501341 828 ELEDAIREKEEMKTRVHNY 846
Cdd:COG4913 420 ELRELEAEIASLERRKSNI 438
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
597-1005 |
1.15e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 46.43 E-value: 1.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 597 DISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRLS 676
Cdd:PRK01156 184 NIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAES 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 677 lkkdELQSAQEEIVKLEEKIDRLNQKSTSqdeAVNVLRSTItvldKEKDNLQETVDEKTEKIACLDDNLANKEKTIThlr 756
Cdd:PRK01156 264 ----DLSMELEKNNYYKELEERHMKIIND---PVYKNRNYI----NDYFKYKNDIENKKQILSNIDAEINKYHAIIK--- 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 757 lTLSELESSTDQLKDLLSSRD---REISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAI 833
Cdd:PRK01156 330 -KLSVLQKDYNDYIKKKSRYDdlnNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIK 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 834 REKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHTQA------------------EDWEIKAHQAEGESSSI 895
Cdd:PRK01156 409 KELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSvcpvcgttlgeeksnhiiNHYNEKKSRLEEKIREI 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 896 RLELLSVDTDRRHLRERVELLEKEIQEHMIahqAYESQISSITKNMSKLEEDIKR-----------EHQDKSSVLADLTS 964
Cdd:PRK01156 489 EIEVKDIDEKIVDLKKRKEYLESEEINKSI---NEYNKIESARADLEDIKIKINElkdkhdkyeeiKNRYKSLKLEDLDS 565
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 2024501341 965 VRELCVKLEASKDLLS-RQLASKSMDYEKVLGELEDVKSEAE 1005
Cdd:PRK01156 566 KRTSWLNALAVISLIDiETNRSRSNEIKKQLNDLESRLQEIE 607
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
111-603 |
1.27e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 46.25 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 111 ENEAADLRFLNNQYVHKIKLLEKESKAKTEKIQQLQEK-------------NLQAVVQTPGGRKRNIPF---------RR 168
Cdd:pfam05483 253 ENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKkdhltkeledikmSLQRSMSTQKALEEDLQIatkticqltEE 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 169 QRMQIDQPVPPSAVSAYPVPQPEDPY--IADLLQVADNRIQELQSEVTQLQEKL-----EISENGKKNYSKQVELRD--- 238
Cdd:pfam05483 333 KEAQMEELNKAKAAHSFVVTEFEATTcsLEELLRTEQQRLEKNEDQLKIITMELqkkssELEEMTKFKNNKEVELEElkk 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 239 ------------KEIERLMLALDGGRSHEVISLESRSKSNEKLIAQLNLQVEYLQQSNKELENRIQDLLDTK-KNV--TS 303
Cdd:pfam05483 413 ilaedeklldekKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKlKNIelTA 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 304 EVVHLSNKNEELCQELNEidhLAQQLERHKEivletadkEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLS 383
Cdd:pfam05483 493 HCDKLLLENKELTQEASD---MTLELKKHQE--------DIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKG 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 384 EELFGKADDKENLELLLNQLEQEKQRLTEKTENFEIKERELV---------LEIERMRLEYGIALGDKSPSRLDAFVKTL 454
Cdd:pfam05483 562 DEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIenknknieeLHQENKALKKKGSAENKQLNAYEIKVNKL 641
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 455 EDDRDYYKRELEYL----QKMIKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFEKHmiEIQSNVKLLTAERDRLNIL 530
Cdd:pfam05483 642 ELELASAKQKFEEIidnyQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQH--KIAEMVALMEKHKHQYDKI 719
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024501341 531 YEQSQSELNRLRREAKhnlvSQSHVGEDGDASLADFRrlmAEKESLREKLKIQQEAANLEKSKMQHDISVLEN 603
Cdd:pfam05483 720 IEERDSELGLYKNKEQ----EQSSAKAALEIELSNIK---AELLSLKKQLEIEKEEKEKLKMEAKENTAILKD 785
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
196-386 |
1.33e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 1.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 196 ADLLQVADNRIQELQSEVTQLQEKLEISENGKKNYSKQVELRDKEIERLmlaldggrSHEVISLESRSKSNEKLIAQLNL 275
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAAL--------ARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 276 QVEYLQQSNKELENRIQDLLDT---KKNVTSEVVHLSNKN----------------------EELCQELNEIDHLAQQLE 330
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRAlyrLGRQPPLALLLSPEDfldavrrlqylkylaparreqaEELRADLAELAALRAELE 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2024501341 331 RHK---EIVLETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEEL 386
Cdd:COG4942 171 AERaelEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALI 229
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
614-1032 |
1.50e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.83 E-value: 1.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 614 ELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLhllnEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLE 693
Cdd:PRK03918 190 NIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEL----EELKEEIEELEKELESLEGSKRKLEEKIRELE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 694 EKIDRLNQKSTSQDEAVNVLRStITVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLL 773
Cdd:PRK03918 266 ERIEELKKEIEELEEKVKELKE-LKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELK 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 774 ssrdREISSLRRQLDASHTEIAETGRVKEIaLKENRRLQDDLATMTRENqaVSSELEDAIREKEEMKTRVHNYITEVSRF 853
Cdd:PRK03918 345 ----KKLKELEKRLEELEERHELYEEAKAK-KEELERLKKRLTGLTPEK--LEKELEELEKAKEEIEEEISKITARIGEL 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 854 ESLIASKEKENQELlekfrmlhtqaedweikaHQAEGESSSIRLELlsVDTDRRHLRERVELLEKEIQEHMiahQAYESQ 933
Cdd:PRK03918 418 KKEIKELKKAIEEL------------------KKAKGKCPVCGREL--TEEHRKELLEEYTAELKRIEKEL---KEIEEK 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 934 ISSITKNMSKLEEDIKREhqdkSSVLADLTSVRELCVKLEASKDLLSRQLASKSMDYEKVLGELEDVKSEAELLKKQLSS 1013
Cdd:PRK03918 475 ERKLRKELRELEKVLKKE----SELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEK 550
|
410
....*....|....*....
gi 2024501341 1014 ERLTIQNLETLLATSRDKE 1032
Cdd:PRK03918 551 LEELKKKLAELEKKLDELE 569
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
507-845 |
1.69e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.88 E-value: 1.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 507 EKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAKHNLVSQSHVgEDGDASLADFRRLMAEKEslREKLKIQQEA 586
Cdd:pfam17380 281 QKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEM-DRQAAIYAEQERMAMERE--RELERIRQEE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 587 ANLEKSKM-QHDISVLENNIQqfELERCELKStisilKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQ 665
Cdd:pfam17380 358 RKRELERIrQEEIAMEISRMR--ELERLQMER-----QQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQE 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 666 RTVEDLQHRLSLKKD-ELQSAQEEIVKLEEKIDRLNQKSTSQdeavnvlRSTITVLDKEKDNLQETVDEKTEKIaclddn 744
Cdd:pfam17380 431 EARQREVRRLEEERArEMERVRLEEQERQQQVERLRQQEEER-------KRKKLELEKEKRDRKRAEEQRRKIL------ 497
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 745 lankEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQldashtEIAETGRVKEIALKENRRLQDDLATMTRENqa 824
Cdd:pfam17380 498 ----EKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERR------REAEEERRKQQEMEERRRIQEQMRKATEER-- 565
|
330 340
....*....|....*....|.
gi 2024501341 825 vsSELEDAIREKEEMKTRVHN 845
Cdd:pfam17380 566 --SRLEAMEREREMMRQIVES 584
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
265-470 |
2.00e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 2.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 265 SNEKLIAQLNLQVEYLQQSNKELENRIQDL------LDTKKNVTSEVVHLSNKNEELCQELNEIDHLAQQLERHKE--IV 336
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALeaeldaLQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDAssDD 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 337 LETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERL-----------SEELFGKADDKENLELLLNQLEQ 405
Cdd:COG4913 687 LAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELqdrleaaedlaRLELRALLEERFAAALGDAVERE 766
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2024501341 406 EKQRLTEKTENFEIKERELVLEIERMRLEY------GIALGDKSPSRLDAFVK---TLEDDR--DYYKRELEYLQK 470
Cdd:COG4913 767 LRENLEERIDALRARLNRAEEELERAMRAFnrewpaETADLDADLESLPEYLAlldRLEEDGlpEYEERFKELLNE 842
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
572-771 |
2.10e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 45.39 E-value: 2.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 572 EKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLK 651
Cdd:PHA02562 189 KIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIK 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 652 AELCSLHLLNEQLQ---------RTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDK 722
Cdd:PHA02562 269 SKIEQFQKVIKMYEkggvcptctQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKIST 348
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2024501341 723 EKDNLQETVDE-----------------KTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKD 771
Cdd:PHA02562 349 NKQSLITLVDKakkvkaaieelqaefvdNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTDLLKD 414
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
313-835 |
2.10e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 2.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 313 EELCQELNEIDHLAQQLERHKEIV-LETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFG-KA 390
Cdd:COG4913 258 RELAERYAAARERLAELEYLRAALrLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGnGG 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 391 DDKENLELLLNQLEQEKQRLTEKTENFEIKERELVLEIERmrleygialgdkSPSRLDAFVKTLEDDRDYYKRELEYLQk 470
Cdd:COG4913 338 DRLEQLEREIERLERELEERERRRARLEALLAALGLPLPA------------SAEEFAALRAEAAALLEALEEELEALE- 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 471 miKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQSN------------------VKLLTAERD------- 525
Cdd:COG4913 405 --EALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDAlaealgldeaelpfvgelIEVRPEEERwrgaier 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 526 -----RLNILYEQSQseLNRLRREAKHNLVSQSHVGEDGDASLADFRRLMAEKESLREKLKIQQ-EAANLEKSKMQHDIS 599
Cdd:COG4913 483 vlggfALTLLVPPEH--YAAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDPDSLAGKLDFKPhPFRAWLEAELGRRFD 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 600 VLE-NNIQQFELER------CELKS--------------TISIL----KERIKSLENELKLKSSKLIQTSDDSSQLKAEL 654
Cdd:COG4913 561 YVCvDSPEELRRHPraitraGQVKGngtrhekddrrrirSRYVLgfdnRAKLAALEAELAELEEELAEAEERLEALEAEL 640
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 655 cslhllnEQLQRTVEDLQHRLSLKKDEL--QSAQEEIVKLEEKIDRLNQkstSQDEaVNVLRSTITVLDKEKDNLQETVD 732
Cdd:COG4913 641 -------DALQERREALQRLAEYSWDEIdvASAEREIAELEAELERLDA---SSDD-LAALEEQLEELEAELEELEEELD 709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 733 EKTEKIACLDDNLANKEKTITHLRLTLSELEsstdqlkdllssrDREISSLRRQLDASHTEIAETGRVKEIAlkenRRLQ 812
Cdd:COG4913 710 ELKGEIGRLEKELEQAEEELDELQDRLEAAE-------------DLARLELRALLEERFAAALGDAVERELR----ENLE 772
|
570 580
....*....|....*....|...
gi 2024501341 813 DDLATMTRENQAVSSELEDAIRE 835
Cdd:COG4913 773 ERIDALRARLNRAEEELERAMRA 795
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
712-843 |
2.37e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 44.57 E-value: 2.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 712 VLRSTITVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDASH 791
Cdd:PRK09039 43 FLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELA 122
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 2024501341 792 TEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRV 843
Cdd:PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKI 174
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
560-939 |
2.71e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 2.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 560 DASLADFRRLMAEKESLREKLkiqqEAANLEKSKMQHDISVLENNIQQFEL--ERCELKSTISILKERIKSLENELKL-- 635
Cdd:COG4717 84 EEKEEEYAELQEELEELEEEL----EELEAELEELREELEKLEKLLQLLPLyqELEALEAELAELPERLEELEERLEElr 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 636 -KSSKLIQTSDDSSQLKAELCSLHLLN--------EQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQ 706
Cdd:COG4717 160 eLEEELEELEAELAELQEELEELLEQLslateeelQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAA 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 707 DEA--------VNVLRSTITVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDR 778
Cdd:COG4717 240 ALEerlkearlLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEE 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 779 EISSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQ-------------AVSSELEDAIREKEEMKTRVHN 845
Cdd:COG4717 320 ELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQleeleqeiaallaEAGVEDEEELRAALEQAEEYQE 399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 846 YITEVSRFESLIASKEKENQELLEKFrmlhtQAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEK--EIQEH 923
Cdd:COG4717 400 LKEELEELEEQLEELLGELEELLEAL-----DEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEdgELAEL 474
|
410
....*....|....*.
gi 2024501341 924 MIAHQAYESQISSITK 939
Cdd:COG4717 475 LQELEELKAELRELAE 490
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
556-803 |
3.43e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 3.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 556 GEDGDASLADFRRLMAEKESLREKLKIQQEAANLEKSKMQhDISVLENNIQQFELERCELKStisiLKERIKSLENELKl 635
Cdd:COG4913 605 GFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQ-ERREALQRLAEYSWDEIDVAS----AEREIAELEAELE- 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 636 kssKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKST----------- 704
Cdd:COG4913 679 ---RLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARlelralleerf 755
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 705 -------SQDEAVNVLRSTITVLDKEKDNLQETVDEKTEK--------IACLDDNLANKEKTITHL-RLTLSELESSTDQ 768
Cdd:COG4913 756 aaalgdaVERELRENLEERIDALRARLNRAEEELERAMRAfnrewpaeTADLDADLESLPEYLALLdRLEEDGLPEYEER 835
|
250 260 270
....*....|....*....|....*....|....*.
gi 2024501341 769 LKDLLSSR-DREISSLRRQLDASHTEIAEtgRVKEI 803
Cdd:COG4913 836 FKELLNENsIEFVADLLSKLRRAIREIKE--RIDPL 869
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
703-922 |
3.91e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 3.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 703 STSQDEAVNVLRSTITVLDKEKDNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESSTDQLKDLLSSRDREISS 782
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 783 LRRQLDASHTEIAE-------TGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVsrfES 855
Cdd:COG4942 95 LRAELEAQKEELAEllralyrLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL---EA 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024501341 856 LIASKEKENQELLEKFRMLHTQAEDWEIKAHQAEGESSSIRLELLSVDTDRRHLRERVELLEKEIQE 922
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
636-1011 |
5.59e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.06 E-value: 5.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 636 KSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVK-LEEKIDRLNQKSTSQDEAVNVLR 714
Cdd:pfam12128 242 EFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDqWKEKRDELNGELSAADAAVAKDR 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 715 STITVLDKEK------------------DNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSE-----LESSTDQLKD 771
Cdd:pfam12128 322 SELEALEDQHgafldadietaaadqeqlPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEqnnrdIAGIKDKLAK 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 772 LLSSRDREI-----------SSLRRQLDASHTEIAETGRVKEIALKENRRLQDDlATMTRE---NQAVSSELEDAIREKE 837
Cdd:pfam12128 402 IREARDRQLavaeddlqaleSELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQ-ATATPElllQLENFDERIERAREEQ 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 838 E---------------MKTRVHNYITEVSRFESLIASKEKENQELLEK--------FRMLHTQAEDW------------- 881
Cdd:pfam12128 481 EaanaeverlqselrqARKRRDQASEALRQASRRLEERQSALDELELQlfpqagtlLHFLRKEAPDWeqsigkvispell 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 882 -------EIKAHQAEGESS--SIRLELLSVDTDRRH-----LRERVELLEKEIQEHMIAHQAYESQISSITK---NMSKL 944
Cdd:pfam12128 561 hrtdldpEVWDGSVGGELNlyGVKLDLKRIDVPEWAaseeeLRERLDKAEEALQSAREKQAAAEEQLVQANGeleKASRE 640
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024501341 945 EEDIKREHQDkssvlADLTsVRELCVKLEASKDLLSRQLASKSmdyEKVLGELEDVKSEAELLKKQL 1011
Cdd:pfam12128 641 ETFARTALKN-----ARLD-LRRLFDEKQSEKDKKNKALAERK---DSANERLNSLEAQLKQLDKKH 698
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
303-530 |
5.92e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 43.76 E-value: 5.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 303 SEVVHLSNKNEELCQE-LNEIDHLAQQLERH--------------KEIVLETADKEIGEAKKEIERK----DSEIQDLEE 363
Cdd:PRK05771 28 LGVVHIEDLKEELSNErLRKLRSLLTKLSEAldklrsylpklnplREEKKKVSVKSLEELIKDVEEElekiEKEIKELEE 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 364 TITRLKSELSSCRRQNERLseELFGK--ADDKENLELLLNQLEQEKQRLTEKTENFEIKERELVLEIERMRLEYGIALgd 441
Cdd:PRK05771 108 EISELENEIKELEQEIERL--EPWGNfdLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGYVYVVV-- 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 442 kspsrldAFVKTLEDDRDYYKRELEYLQKMIKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRF-EKHMIEIQSNVKLL 520
Cdd:PRK05771 184 -------VVLKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELaKKYLEELLALYEYL 256
|
250
....*....|
gi 2024501341 521 TAERDRLNIL 530
Cdd:PRK05771 257 EIELERAEAL 266
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
503-1015 |
6.41e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.90 E-value: 6.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 503 LDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRR------EAKHNLVSQSHVGEDGDASLADFRRLMAEKESL 576
Cdd:PRK03918 157 LDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEkekeleEVLREINEISSELPELREELEKLEKEVKELEEL 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 577 REKLkiqqEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLEnELKLKSSKLIQTSDDSSQLKAELCS 656
Cdd:PRK03918 237 KEEI----EELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELRE 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 657 LHLLNEQLQRTVEDLQHR---LSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEA------VNVLRSTITVLDKEK--- 724
Cdd:PRK03918 312 IEKRLSRLEEEINGIEERikeLEEKEERLEELKKKLKELEKRLEELEERHELYEEAkakkeeLERLKKRLTGLTPEKlek 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 725 --DNLQETVDEKTEKIACLDDNLANKEKTITHLRLTLSELESStdqlkdllssrDREISSLRRQLDASHTeiaetGRVKE 802
Cdd:PRK03918 392 elEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKA-----------KGKCPVCGRELTEEHR-----KELLE 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 803 IALKENRRLQDDLAtmtrenqavssELEDAIREKEEMKTRVHNYITEVSRF-------ESLIASKEKENQELLEKFRMLH 875
Cdd:PRK03918 456 EYTAELKRIEKELK-----------EIEEKERKLRKELRELEKVLKKESELiklkelaEQLKELEEKLKKYNLEELEKKA 524
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 876 TQAEDWEIKAHQAEGESSSIRLELlsvdtdrrhlrERVELLEKEIQEHMIAHQAYESQISSITKNMSK--------LEED 947
Cdd:PRK03918 525 EEYEKLKEKLIKLKGEIKSLKKEL-----------EKLEELKKKLAELEKKLDELEEELAELLKELEElgfesveeLEER 593
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2024501341 948 IKREHQDKSSVLADLTSVRELCVKLEASKDLlSRQLASKSMDYEKVLGELEDVKSEAELLKKQLSSER 1015
Cdd:PRK03918 594 LKELEPFYNEYLELKDAEKELEREEKELKKL-EEELDKAFEELAETEKRLEELRKELEELEKKYSEEE 660
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
605-778 |
6.74e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 6.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 605 IQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAELCSLHLLNEQLQRTVEDLQHRLSLKKD--EL 682
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNnkEY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 683 QSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDKEKDNLQETVDEKTEKiacLDDNLANKEKTITHLRLTLSEL 762
Cdd:COG1579 92 EALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAE---LDEELAELEAELEELEAEREEL 168
|
170
....*....|....*.
gi 2024501341 763 ESSTDqlKDLLSSRDR 778
Cdd:COG1579 169 AAKIP--PELLALYER 182
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
490-703 |
7.83e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 7.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 490 RLITRERDELQSMLDRFEKHMIEIQSNVklltaerdrlnilyEQSQSELNRLRReaKHNLVSQSHVGEDGDASLADFRRL 569
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKEL--------------EEAEAALEEFRQ--KNGLVDLSEEAKLLLQQLSELESQ 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 570 MAEKESLREKLKIQQEAANLEKSKMQHDISVLENNiqqfelercelkSTISILKERIKSLENELKLKSSKLIQTSDDSSQ 649
Cdd:COG3206 228 LAEARAELAEAEARLAALRAQLGSGPDALPELLQS------------PVIQQLRAQLAELEAELAELSARYTPNHPDVIA 295
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2024501341 650 LKAELCSL-HLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKS 703
Cdd:COG3206 296 LRAQIAALrAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELE 350
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
205-708 |
7.89e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.80 E-value: 7.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 205 RIQELQSEVTQLQEKLEISENGKKNYSKQVELRDKEI-ERLMLALDGGRSHEVISLESRSKSNEKLIAQLNLQVE----- 278
Cdd:TIGR00618 380 HIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTsAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEkleki 459
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 279 YLQQSNKELENRIQdLLDTKKNVTSEVVHLSNKNEELCQELNEIDHLAQQLERHKEIVLETADkEIGEAKKEIERKDSEI 358
Cdd:TIGR00618 460 HLQESAQSLKEREQ-QLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDID-NPGPLTRRMQRGEQTY 537
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 359 QDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLELLLNQLEQEKQRLTEKTENFEiKERELVLEIERMRLEYGIA 438
Cdd:TIGR00618 538 AQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQ-DLTEKLSEAEDMLACEQHA 616
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 439 LGDKSPSRLDAFVKTLEDDRDYYKRELEYLQKMIKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFEKHMIEIQSNVK 518
Cdd:TIGR00618 617 LLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWK 696
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 519 LLTAERDRLNILYEQSQSELNRLRREAKHNLVSQ-SHVGEDGDASLADFRRLMAEKESLREKLKIQQEAANLEK------ 591
Cdd:TIGR00618 697 EMLAQCQTLLRELETHIEEYDREFNEIENASSSLgSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVtaalqt 776
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 592 -SKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQtsdDSSQLKAELCSLHLLNEQLQRTVED 670
Cdd:TIGR00618 777 gAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQ---EEEQFLSRLEEKSATLGEITHQLLK 853
|
490 500 510
....*....|....*....|....*....|....*...
gi 2024501341 671 LQHRLSlKKDELQSAQEEIVKLEEKIDRLNQKSTSQDE 708
Cdd:TIGR00618 854 YEECSK-QLAQLTQEQAKIIQLSDKLNGINQIKIQFDG 890
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
205-787 |
1.14e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.11 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 205 RIQELQSEVTQLQEKLEISENGKKNYSKQVELRDKEIERLMLALDGGRShevislesRSKSNEKLIAQLNLQVEYLQQSN 284
Cdd:PRK02224 252 ELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLA--------EAGLDDADAEAVEARREELEDRD 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 285 KELENRIQDlldtkknvtsEVVHLSNKNEELCQELNEIDHLAQQLERHKEIVlETADKEIGEAKKEIERKDSEIQDLEET 364
Cdd:PRK02224 324 EELRDRLEE----------CRVAAQAHNEEAESLREDADDLEERAEELREEA-AELESELEEAREAVEDRREEIEELEEE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 365 ItrlkselsscrrqnERLSEELFGKADDKENLELLLNQLEQEKQRLTEKtenfeIKERELVLEIERMRLEYGIALGDK-- 442
Cdd:PRK02224 393 I--------------EELRERFGDAPVDLGNAEDFLEELREERDELRER-----EAELEATLRTARERVEEAEALLEAgk 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 443 -----SPSRLDAFVKTLEDDRDyYKRELEYLQKMIKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFEkhmieiqsnv 517
Cdd:PRK02224 454 cpecgQPVEGSPHVETIEEDRE-RVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLE---------- 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 518 KLLTAERDRLnilyEQSQSELNRLRREAkhnlvsqshvgEDGDASLADFRRLMAEKESLREKLKIQQEAANLEKSKMQHD 597
Cdd:PRK02224 523 ELIAERRETI----EEKRERAEELRERA-----------AELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKER 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 598 ISVLENNIQQFElERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLKAELcslhllneqlqrtvedLQHRLSL 677
Cdd:PRK02224 588 IESLERIRTLLA-AIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEF----------------DEARIEE 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 678 KKDELQSAQEEIVKLEEKIDRLNQKSTSqdeavnvLRSTITVLDKEKDNLQETVDEKTEkiaclddnLANKEKTITHLRL 757
Cdd:PRK02224 651 AREDKERAEEYLEQVEEKLDELREERDD-------LQAEIGAVENELEELEELRERREA--------LENRVEALEALYD 715
|
570 580 590
....*....|....*....|....*....|
gi 2024501341 758 TLSELESSTDQLKDLLssRDREISSLRRQL 787
Cdd:PRK02224 716 EAEELESMYGDLRAEL--RQRNVETLERML 743
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
28-419 |
1.61e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.80 E-value: 1.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 28 ESLPLVEKLFSDLVHTTESLRSA--KLSAGKIEKECSnyDAIIEPYKTETAKLTRENNELHLEVLKLKEQSD------HH 99
Cdd:pfam15921 458 ESLEKVSSLTAQLESTKEMLRKVveELTAKKMTLESS--ERTVSDLTASLQEKERAIEATNAEITKLRSRVDlklqelQH 535
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 100 IKDLKASLRRAENEAADLRFLNNQYVHKIKLLEKESKAKTEKIQQlQEKNLQAVVQTPGGRKRNIPFRRQRMQidqpvpp 179
Cdd:pfam15921 536 LKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQ-HGRTAGAMQVEKAQLEKEINDRRLELQ------- 607
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 180 savsaypvpqpedpYIADLLQVADNRIQELQSEVTQLQekleisengkknySKQVELRDKEIERLMLALDGGRSHEVISL 259
Cdd:pfam15921 608 --------------EFKILKDKKDAKIRELEARVSDLE-------------LEKVKLVNAGSERLRAVKDIKQERDQLLN 660
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 260 ESRSKSNEkliaqLNLQVEYLQQSNKELENRIQDLLDTKKNVTsevVHLSNKNEELCQELNEIDHLaQQLERHKEIVLET 339
Cdd:pfam15921 661 EVKTSRNE-----LNSLSEDYEVLKRNFRNKSEEMETTTNKLK---MQLKSAQSELEQTRNTLKSM-EGSDGHAMKVAMG 731
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 340 ADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLELLLNQLEQEKQRLTEKTENFEI 419
Cdd:pfam15921 732 MQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEV 811
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
204-518 |
1.65e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.70 E-value: 1.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 204 NRIQELQSEVTQLQEKLEISENGKKNYSKQVELRDKEIERLMLALDGGRSH------EVISLESRSKSNEKLIAQLNLQV 277
Cdd:TIGR04523 335 KIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEiknlesQINDLESKIQNQEKLNQQKDEQI 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 278 EYLQQSNKELENRIQDLLDTKKNVTSEVVHLSNKNEELCQELNEIDHLAQQLERHKEIV----------LETADKEIGEA 347
Cdd:TIGR04523 415 KKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLsrsinkikqnLEQKQKELKSK 494
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 348 KKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEElfgKADDKENLELLLNQLEQEKQRLteKTENFEIKERELVLE 427
Cdd:TIGR04523 495 EKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESE---KKEKESKISDLEDELNKDDFEL--KKENLEKEIDEKNKE 569
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 428 IERMRLEYgiALGDKSPSRLDAFVKTLEDDRDYYKRELEYLQKMIKRRPSPSRRSPEKSEDLRLItreRDELQSMLDRFE 507
Cdd:TIGR04523 570 IEELKQTQ--KSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSI---IKNIKSKKNKLK 644
|
330
....*....|.
gi 2024501341 508 KHMIEIQSNVK 518
Cdd:TIGR04523 645 QEVKQIKETIK 655
|
|
| DUF724 |
pfam05266 |
Protein of unknown function (DUF724); This family contains several uncharacterized proteins ... |
287-363 |
1.66e-03 |
|
Protein of unknown function (DUF724); This family contains several uncharacterized proteins found in Arabidopsis thaliana and other plants. This region is often found associated with Agenet domains and may contain coiled-coil.
Pssm-ID: 428400 [Multi-domain] Cd Length: 188 Bit Score: 40.72 E-value: 1.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 287 LENRIQDLLDTKKNVTSEVVHLSNKNEELCQELNEIDHLAQQLERH---KEIVLETADKEIGEAKKEIERKDSEIQDLEE 363
Cdd:pfam05266 100 LKDRQTKLLEELKKLEKKIAEEESEKRKLEEEIDELEKKILELERQlalAKEKKEAADKEIARLKSEAEKLEQEIQDVEL 179
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
572-699 |
1.74e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.54 E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 572 EKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLK 651
Cdd:COG2433 389 ELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSEERREIRKDREIS 468
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2024501341 652 AelcslhllneqLQRTVEDLQHrlslkkdELQSAQEEIVKLEEKIDRL 699
Cdd:COG2433 469 R-----------LDREIERLER-------ELEEERERIEELKRKLERL 498
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
494-710 |
1.80e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 494 RERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAKhnlvsqshvgedgdASLADFRRLMAEK 573
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELA--------------ALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 574 ESLREKLKIQQEA-----ANLEKSKMQHDISVLENN------------IQQFELERCELKSTISILKERIKSLENELKLK 636
Cdd:COG4942 93 AELRAELEAQKEElaellRALYRLGRQPPLALLLSPedfldavrrlqyLKYLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024501341 637 SSKLIQTSDDSSQLKAELCSLHllnEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAV 710
Cdd:COG4942 173 RAELEALLAELEEERAALEALK---AERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
672-838 |
2.67e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 2.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 672 QHRLSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRstitvldkekdNLQETVDEktekiaclDDNLANKEKT 751
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQ-----------RLAEYSWD--------EIDVASAERE 669
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 752 ITHLRLTLSELESSTDQLKdllssrdreisSLRRQLDASHTEIAETGRVKEIALKENRRLQDDLATMTRENQAVSSELED 831
Cdd:COG4913 670 IAELEAELERLDASSDDLA-----------ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEA 738
|
....*..
gi 2024501341 832 AIREKEE 838
Cdd:COG4913 739 AEDLARL 745
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
334-1015 |
2.71e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.02 E-value: 2.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 334 EIVLETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEElfgkaddKENLELLLNQLEQEKQRLTEK 413
Cdd:pfam05483 98 EAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKE-------NNATRHLCNLLKETCARSAEK 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 414 TENFEIKERE-------LVLEIERMRLEYGIALGDKSPSRLDAFVKTLEDDR------DYYKRELEYLQKMIKRRPSPSR 480
Cdd:pfam05483 171 TKKYEYEREEtrqvymdLNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEkiqhleEEYKKEINDKEKQVSLLLIQIT 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 481 RSPEKSEDLRLITRERDELQSMLDRFEKHMIEiqsNVKLLTAERDRLNilyeqsqSELNRLRREAKHNLVSQSHVGEDGD 560
Cdd:pfam05483 251 EKENKMKDLTFLLEESRDKANQLEEKTKLQDE---NLKELIEKKDHLT-------KELEDIKMSLQRSMSTQKALEEDLQ 320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 561 ASLADFRRLMAEKESLREKLKIQQEAANLEKSKMQHDISVLENNI----QQFELERCELKSTISILKERIKSLENELKLK 636
Cdd:pfam05483 321 IATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLrteqQRLEKNEDQLKIITMELQKKSSELEEMTKFK 400
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 637 SSKLIQTSDDSSQLkAELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKidrLNQKSTSQDEAVNVLRST 716
Cdd:pfam05483 401 NNKEVELEELKKIL-AEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQ---LTAIKTSEEHYLKEVEDL 476
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 717 ITVLDKEKDNLQETVDEktekiaCLDDNLANKEKTITHLRLTLsELESSTDQLKDLLSSRDREISSLRRQLDASHTEIAE 796
Cdd:pfam05483 477 KTELEKEKLKNIELTAH------CDKLLLENKELTQEASDMTL-ELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDE 549
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 797 TGRVKEIALKENRRLQDDLATMTRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHT 876
Cdd:pfam05483 550 LESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENK 629
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 877 QAEDWEIKAHQAEgesssirlelLSVDTDRRHLRERVELLEKEIQEHMIAHQAYESQIS---SITKNMSKLEEDIKREHQ 953
Cdd:pfam05483 630 QLNAYEIKVNKLE----------LELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEkakAIADEAVKLQKEIDKRCQ 699
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024501341 954 DKSSVLADLTSVR-----ELCVKLEASKDLLSRQLASKSMDYEKVLGELEDVKSEAELLKKQLSSER 1015
Cdd:pfam05483 700 HKIAEMVALMEKHkhqydKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEK 766
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
177-385 |
2.83e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.35 E-value: 2.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 177 VPPSAVSAYPVPQPEDPYIADL----------LQVADNRIQELQSEVTQLQEKLEISENGKKNYSKQVELRDKEIERLML 246
Cdd:COG3883 7 AAPTPAFADPQIQAKQKELSELqaeleaaqaeLDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERRE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 247 ALD--------GGRSHEVISLESRSKSNEKLIAQLNLqVEYLQQSNKELenrIQDLLDTKKNvtsevvhLSNKNEELCQE 318
Cdd:COG3883 87 ELGeraralyrSGGSVSYLDVLLGSESFSDFLDRLSA-LSKIADADADL---LEELKADKAE-------LEAKKAELEAK 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024501341 319 LNEIDHLAQQLERHKeivlETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEE 385
Cdd:COG3883 156 LAELEALKAELEAAK----AELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAA 218
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
72-698 |
3.18e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 41.96 E-value: 3.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 72 KTETAKLTRENNELHLEVLKLKEQSDHHIKDLKASLRRAENeaadlrFLNNQYVHKIKLLEKESKAKTEKIQQLQEKNLQ 151
Cdd:TIGR01612 1103 KEENIKYADEINKIKDDIKNLDQKIDHHIKALEEIKKKSEN------YIDEIKAQINDLEDVADKAISNDDPEEIEKKIE 1176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 152 AVVqTPGGRKRNIPFRRQRMQID-QPVPPSAVSAYPVPQPEDPY-----------IADLLQVADNRIQELQSEVTQLQEK 219
Cdd:TIGR01612 1177 NIV-TKIDKKKNIYDEIKKLLNEiAEIEKDKTSLEEVKGINLSYgknlgklflekIDEEKKKSEHMIKAMEAYIEDLDEI 1255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 220 LEISENGKKNYSKQVELRdKEIERLMLALDGGRSHEVISlesrsKSNEKLIAQLNLQVEYLQQSNkeleNRIQDLLDTKK 299
Cdd:TIGR01612 1256 KEKSPEIENEMGIEMDIK-AEMETFNISHDDDKDHHIIS-----KKHDENISDIREKSLKIIEDF----SEESDINDIKK 1325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 300 NVTSEVVHLSNKNEELCQELNEIDHLAQQLERHKeivLETADKEIGEAKKEIERKD----SEIQDLEETITRLK--SELS 373
Cdd:TIGR01612 1326 ELQKNLLDAQKHNSDINLYLNEIANIYNILKLNK---IKKIIDEVKEYTKEIEENNknikDELDKSEKLIKKIKddINLE 1402
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 374 SCRRQNErlseelfGKADDKENLELLLNQLEQEKQRLTEKTENFEIKERELVLEIERMRLEYGIALGD-KSPSRLDAFVK 452
Cdd:TIGR01612 1403 ECKSKIE-------STLDDKDIDECIKKIKELKNHILSEESNIDTYFKNADENNENVLLLFKNIEMADnKSQHILKIKKD 1475
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 453 TLEDDRDYYKREL-EYLQKMIKRRPSPSRRSPEKSEDLRLITRERDELQSMLDRFekHMIEIQSNVKllTAERDRLNILY 531
Cdd:TIGR01612 1476 NATNDHDFNINELkEHIDKSKGCKDEADKNAKAIEKNKELFEQYKKDVTELLNKY--SALAIKNKFA--KTKKDSEIIIK 1551
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 532 EQsqselnrlrREAKHNLVSQSHVGEDgdasladfrrlmAEKESLREKLKIQQEAANLEKS-KMQHDISVLENNIQQFEL 610
Cdd:TIGR01612 1552 EI---------KDAHKKFILEAEKSEQ------------KIKEIKKEKFRIEDDAAKNDKSnKAAIDIQLSLENFENKFL 1610
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 611 ERCELKSTISILKERIKSLENELklkSSKLIQTSDdsSQLKAELCSLHLLNEQLQrTVEDLQHRLSLKKDELQSAQEEIV 690
Cdd:TIGR01612 1611 KISDIKKKINDCLKETESIEKKI---SSFSIDSQD--TELKENGDNLNSLQEFLE-SLKDQKKNIEDKKKELDELDSEIE 1684
|
....*...
gi 2024501341 691 KLEEKIDR 698
Cdd:TIGR01612 1685 KIEIDVDQ 1692
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
746-1064 |
3.29e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.58 E-value: 3.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 746 ANKEKTITHLRLTLSELesstDQLKDLLSSRDREISSLRRQldashTEIAEtgrvKEIALKENRRlQDDLATMTRENQAV 825
Cdd:TIGR02168 172 ERRKETERKLERTRENL----DRLEDILNELERQLKSLERQ-----AEKAE----RYKELKAELR-ELELALLVLRLEEL 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 826 SSELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFrmlhtqaedweikaHQAEGESSSIRLELLSVDTD 905
Cdd:TIGR02168 238 REELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEI--------------EELQKELYALANEISRLEQQ 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 906 RRHLRERVELLEKEIQEhmiahqaYESQissITKNMSKLEEDIKREHQdKSSVLADLTSVRELCVKLEASKDLLSRQLAS 985
Cdd:TIGR02168 304 KQILRERLANLERQLEE-------LEAQ---LEELESKLDELAEELAE-LEEKLEELKEELESLEAELEELEAELEELES 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 986 KSMDYEKvlgELEDVKSEAELLKKQLSSERLTIQNLETL---LATSRDKEFQNHLTSHEKDSEIQLLKDKLTLAEGKLAI 1062
Cdd:TIGR02168 373 RLEELEE---QLETLRSKVAQLELQIASLNNEIERLEARlerLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEEL 449
|
..
gi 2024501341 1063 TK 1064
Cdd:TIGR02168 450 EE 451
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
680-951 |
3.35e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 3.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 680 DELQSAQEEIVKLEEKIDRLnqkstsqdeavnvlrstiTVLDKEKDNLQETVDEKTEKIACLDD-NLANKEKTITHLRLT 758
Cdd:COG4913 235 DDLERAHEALEDAREQIELL------------------EPIRELAERYAAARERLAELEYLRAAlRLWFAQRRLELLEAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 759 LSELESSTDQLKDLLSSRDREISSLRRQLDASHTEIAETGRVKEIALKEnrrlqddlatmtrenqavssELEDAIREKEE 838
Cdd:COG4913 297 LEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLER--------------------EIERLERELEE 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 839 MKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHTQAEDWEIKAHQAEGESssirlellsvDTDRRHLRERVELLEK 918
Cdd:COG4913 357 RERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEA----------EAALRDLRRELRELEA 426
|
250 260 270
....*....|....*....|....*....|...
gi 2024501341 919 EIqehmiahQAYESQISSITKNMSKLEEDIKRE 951
Cdd:COG4913 427 EI-------ASLERRKSNIPARLLALRDALAEA 452
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
202-386 |
3.54e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 3.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 202 ADNRIQELQSEVTQLQEKLEISENGKKNYSKQVELRDKEIERLMLALDggrsheviSLESRSKSNEKLIAQLNLQVEYLQ 281
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELE--------ALQAEIDKLQAEIAEAEAEIEERR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 282 QsnkELENRIQDLLDTKKNVTSEVVHLSNKN---------------EELCQELNEIDHLAQQLERHKEiVLETADKEIGE 346
Cdd:COG3883 86 E---ELGERARALYRSGGSVSYLDVLLGSESfsdfldrlsalskiaDADADLLEELKADKAELEAKKA-ELEAKLAELEA 161
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2024501341 347 AKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEEL 386
Cdd:COG3883 162 LKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAEL 201
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
660-922 |
5.62e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.68 E-value: 5.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 660 LNEQLQRTVEDLQ-----HRLSLKKDE----LQSAQEEIVKLEEKIDRLNQ--------KSTSQDEAVNVLRSTITVLDK 722
Cdd:PRK05771 14 LKSYKDEVLEALHelgvvHIEDLKEELsnerLRKLRSLLTKLSEALDKLRSylpklnplREEKKKVSVKSLEELIKDVEE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 723 EKDNLQETVDEKTEKIAclddNLANKEKTITHLRLTLSELESSTDQLKDLLSSR--DREISSLRRQLDASHTEIAETGRV 800
Cdd:PRK05771 94 ELEKIEKEIKELEEEIS----ELENEIKELEQEIERLEPWGNFDLDLSLLLGFKyvSVFVGTVPEDKLEELKLESDVENV 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 801 KEIALKEN---------RRLQDDLATMTRENQAVSSELEDAIREKEEmktrvhnyiteVSRFESLIASKEKENQELLEKF 871
Cdd:PRK05771 170 EYISTDKGyvyvvvvvlKELSDEVEEELKKLGFERLELEEEGTPSEL-----------IREIKEELEEIEKERESLLEEL 238
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 2024501341 872 RMLHTQAEDwEIKAHQAEGESSSIRLELLSVDTDRRHL--------RERVELLEKEIQE 922
Cdd:PRK05771 239 KELAKKYLE-ELLALYEYLEIELERAEALSKFLKTDKTfaiegwvpEDRVKKLKELIDK 296
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
562-828 |
6.08e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 40.66 E-value: 6.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 562 SLADFRRLMAEKESLREKLKIQQ----EAANLEKSKMQHDISVlENNIQQFELERCELKSTISILKERIKSLENELKLKS 637
Cdd:PLN02939 154 ALEDLEKILTEKEALQGKINILEmrlsETDARIKLAAQEKIHV-EILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLK 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 638 SKLIQTSDDSSQLKAELCSLHLLNEQ----------LQRTVEDLQHRLSlkkdelqSAQEEIVKLEE-KIDRLNQKSTS- 705
Cdd:PLN02939 233 EENMLLKDDIQFLKAELIEVAETEERvfklekerslLDASLRELESKFI-------VAQEDVSKLSPlQYDCWWEKVENl 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 706 ---QDEAVNVLRSTITVLDKEKDnLQETVDEKTEKIaclddnlanKEKTITHLRLTLSELesstdqlkdllssRDREISS 782
Cdd:PLN02939 306 qdlLDRATNQVEKAALVLDQNQD-LRDKVDKLEASL---------KEANVSKFSSYKVEL-------------LQQKLKL 362
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 2024501341 783 LRRQLDASHTEIAETGRVKEIALKEnrrLQDDLATMTRENQAVSSE 828
Cdd:PLN02939 363 LEERLQASDHEIHSYIQLYQESIKE---FQDTLSKLKEESKKRSLE 405
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
487-790 |
6.29e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 40.66 E-value: 6.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 487 EDLRLITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQsqseLNRLRREAKHNLVSQSHVgedgdasladF 566
Cdd:PLN02939 156 EDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQ----LEKLRNELLIRGATEGLC----------V 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 567 RRLMAEKESLREKLKIQQEAANLEKSKMQHdISVLENNIQQFELERcelkstiSILKERIKSLEnelklksSKLIQTSDD 646
Cdd:PLN02939 222 HSLSKELDVLKEENMLLKDDIQFLKAELIE-VAETEERVFKLEKER-------SLLDASLRELE-------SKFIVAQED 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 647 SSQLKAelcslhLLNEQLQRTVEDLQHRLSLKKDELQSAQ---EEIVKLEEKIDRLNQkstSQDEAVNVLRSTitvldke 723
Cdd:PLN02939 287 VSKLSP------LQYDCWWEKVENLQDLLDRATNQVEKAAlvlDQNQDLRDKVDKLEA---SLKEANVSKFSS------- 350
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2024501341 724 kdnlqETVDEKTEKIACLDDNL-ANKEKTITHLRLtlseLESSTDQLKDLLSSRDREisSLRRQLDAS 790
Cdd:PLN02939 351 -----YKVELLQQKLKLLEERLqASDHEIHSYIQL----YQESIKEFQDTLSKLKEE--SKKRSLEHP 407
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
204-699 |
6.96e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.43 E-value: 6.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 204 NRIQELQSEVTQLQEKLEISENGKKNYSKQVELRDKEIERLMlaldgGRSHEVISLESRSKSNEKLIAQLNLQVEYLQQS 283
Cdd:PRK03918 238 EEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELE-----EKVKELKELKEKAEEYIKLSEFYEEYLDELREI 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 284 NKELE------NRIQDLLDTKKNVTSEVVHLSNKNEELCQELNEIDHLAQQLERHKEIV--------------LETADKE 343
Cdd:PRK03918 313 EKRLSrleeeiNGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKeelerlkkrltgltPEKLEKE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 344 IGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEE-----LFGKADDKENLELLLNQLEQEKQRLTEKTENFE 418
Cdd:PRK03918 393 LEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAkgkcpVCGRELTEEHRKELLEEYTAELKRIEKELKEIE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 419 IKERELVLEIERMRLEYgialgdKSPSRLDAFVKTLEddrdyykrELEYLQKmiKRRPSPSRRSPEKSEDLRLITRERDE 498
Cdd:PRK03918 473 EKERKLRKELRELEKVL------KKESELIKLKELAE--------QLKELEE--KLKKYNLEELEKKAEEYEKLKEKLIK 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 499 LQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAKHNLVSQSHVGEDGDASLADFRRLMAEKESLRE 578
Cdd:PRK03918 537 LKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELER 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 579 KLKiQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISilKERIKSLENELKLKSSKLiqtsddsSQLKAELCSLH 658
Cdd:PRK03918 617 EEK-ELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYS--EEEYEELREEYLELSREL-------AGLRAELEELE 686
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 2024501341 659 LLNEQLQRTVEDLQHRlslkKDELQSAQEEIVKLEEKIDRL 699
Cdd:PRK03918 687 KRREEIKKTLEKLKEE----LEEREKAKKELEKLEKALERV 723
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
252-1060 |
8.16e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 40.34 E-value: 8.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 252 RSHEVISLESRSKSNEKLIAQLNLQVEYLQQSNKELENRIQDLLDTKKNVTSEVVHLSNKNEELcqELNEIDHLAQQLER 331
Cdd:pfam02463 185 LAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRD--EQEEIESSKQEIEK 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 332 HKEIvLETADKEIGEAKKEIERKDSEIQDLEETITRLKSELSSCRRQNERLSEELFGKADDKENLELLLNQLEQEKQRLT 411
Cdd:pfam02463 263 EEEK-LAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 412 EKTENFEIKERELVLEIERMRLEYGIALGDKspSRLDAFVKTLEDDRDYYKRELEYLQKMIKRRPSPSRRSPEKSEDLRL 491
Cdd:pfam02463 342 KELKELEIKREAEEEEEEELEKLQEKLEQLE--EELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLED 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 492 ITRERDELQSMLDRFEKHMIEIQSNVKLLTAERDRLNILYEQSQSELNRLRREAKHNLVSQSHVGEDGDASLADFRRLMA 571
Cdd:pfam02463 420 LLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERS 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 572 EKESLREKLKIQQEAANLEKSKMQHDISVLENNIQQFELERCELKSTISILKERIKSLENELKLKSSKLIQTSDDSSQLK 651
Cdd:pfam02463 500 QKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARK 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 652 AELCSLHLLNEQLQRTVEDLQHRLSLKKDELQSAQEEIVKLEEKIDRLNQKSTSQDEAVNVLRSTITVLDKEKDNLQETV 731
Cdd:pfam02463 580 LRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLA 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 732 DEKTEKIACLDDNLANKEKTIThLRLTLSELESSTDQLKDLLSSRDREISSLRRQLDASHTEIAETGRVKEIALKENRRL 811
Cdd:pfam02463 660 EKSEVKASLSELTKELLEIQEL-QEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEEL 738
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 812 QddlatmtRENQAVSSELEDAIREKEEMKTRVHNYITEVSRFESLIASKEKENQELLEKFRMLHTQAEDWEIKAHQAEGE 891
Cdd:pfam02463 739 K-------LLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELK 811
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 892 SSSIRLELLSVDTDRRHLRERVELLEKEIQEHMIAHQAYESQISSITKNMSKLEEDIKREHQDKSSVLADLTSVRELCVK 971
Cdd:pfam02463 812 EEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESK 891
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 972 LEASKDLLSRQLASKSMDYEKVLGELEDVKSEAELLKKQLSSERltiQNLETLLATSRDKEFQNHLTSHEKDSEIQLLKD 1051
Cdd:pfam02463 892 EEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEE---EPEELLLEEADEKEKEENNKEEEEERNKRLLLA 968
|
....*....
gi 2024501341 1052 KLTLAEGKL 1060
Cdd:pfam02463 969 KEELGKVNL 977
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
195-469 |
9.91e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.90 E-value: 9.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 195 IADLLQVADNRIQELQSEVTQLQEKLEIsengkknYSKQVELRDKEIErlmlaldggrshevislesrsksneklIAQLN 274
Cdd:COG4913 622 LEEELAEAEERLEALEAELDALQERREA-------LQRLAEYSWDEID---------------------------VASAE 667
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 275 LQVEylqqsnkELENRIQDLLDTKknvtsevvhlsnkneelcqelNEIDHLAQQLERHKEIvLETADKEIGEAKKEIERK 354
Cdd:COG4913 668 REIA-------ELEAELERLDASS---------------------DDLAALEEQLEELEAE-LEELEEELDELKGEIGRL 718
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024501341 355 DSEIQDLEETITRLKSELSSCRR-----QNERLsEELFGKADDKENLELLLNQLEQEKQRLTEKTENfeiKERELVLEIE 429
Cdd:COG4913 719 EKELEQAEEELDELQDRLEAAEDlarleLRALL-EERFAAALGDAVERELRENLEERIDALRARLNR---AEEELERAMR 794
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 2024501341 430 RMRLEYGIALGDkspsrLDAFVktleDDRDYYKRELEYLQ 469
Cdd:COG4913 795 AFNREWPAETAD-----LDADL----ESLPEYLALLDRLE 825
|
|
| |
