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Conserved domains on  [gi|2024503300|ref|XP_040528280|]
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coiled-coil domain-containing protein 73 isoform X20 [Gallus gallus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
CCDC73 super family cl25808
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil ...
24-1040 0e+00

Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil containing proteins. The function is not known. The alternative name is sarcoma antigen NY-SAR-79.


The actual alignment was detected with superfamily member pfam15818:

Pssm-ID: 464893 [Multi-domain]  Cd Length: 1048  Bit Score: 950.93  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   24 ETLQHQTDTLQQQNKEAMAAFKKQLQARMFAMEEEKGKYQLAVEIKEKEIDGLKETLKELQISKHTLQKKLNEMDQKLQM 103
Cdd:pfam15818   45 ETLQNQKETLAKQHKEAMAVFKKQLQMKMCALEEEKGKYQLATEIKEKEIEGLKETLKALQVSKYSLQKKVSEMEQKLQL 124
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  104 HLTGREEHNKKLNEVERCYATIACQFGIVKGVHEKLEHSVQEAIQLNKKLTSVNKRQETEISNLKEELKKVTTDLIRSKV 183
Cdd:pfam15818  125 HLLAKEDHHKQLNEIEKYYATITGQFGLVKENHGKLEQNVQEAIQLNKRLSALNKKQESEICSLKKELKKVTSDLIKSKV 204
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  184 TSQHRVGEENINLAAKEKQFQELQQKIRMETAISKRVQEENANIKEEKLEILSSLQCVQKQLQQITQTNVRMESELNALR 263
Cdd:pfam15818  205 TCQYKMGEENINLTIKEQKFQELQERLNMELELNKKINEEITHIQEEKQDIIISFQHMQQLLQQQTQANTEMEAELKALK 284
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  264 EEYQTLERDNELQREKAKENEEKFLNLQNEHEKALRIWKKDEENLRREMDTIKNELNSLKKTQGHLDDCHPPQGNQ---- 339
Cdd:pfam15818  285 ENNQTLERDNELQREKVKENEEKFLNLQNEHEKALGTWKKHVEELNGEINEIKNELSSLKETHIKLQEHYNKLCNQkkfe 364
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  340 HSEQVENLQIHSTVHpvirnsGQEQSKGSEIQAIQKKNDcmpsilrkdnnsghEDEIEVKNTVSFSLSTEELQIEQK--- 416
Cdd:pfam15818  365 EDKKFQNVPEVNNEN------SEMSTEKSENLIIQKYNS--------------EQEIREENTKSFCSDTEYRETEKKkgp 424
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  417 ---------LQVLENGFKDEINVASPLEGKEREVSPRNTLCTDTDLITQGQNseMHVTECKEAENLETTCRVLLEGNSAN 487
Cdd:pfam15818  425 pveeiiiedLQVLEKSFKNEIDTSVPQDKNQSEISLSKTLCTDKDLISQGQT--LNVTDFRKSVTTEIKDKLCLEKDNGC 502
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  488 LQQKLQDSTGPAAPHHTETSKVLLDAADRVIVSDKNAIQEMNSSNQELCSTTHESICTKvdknssiiELNSSVLTTKASK 567
Cdd:pfam15818  503 SEFKSPNNLFLVADQSIETEKIHLESTEGLGLHHADIHLETESNRSSFNGTLNEMAHNT--------NHNKDVSENEPFK 574
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  568 KESEAAVCTEKSAVCERNTDNHQVSEFHFGILSYPKENCQtgYQKCSLLNSDN-NVDNRLCRIERslLNLSDLPRDKFPF 646
Cdd:pfam15818  575 QQFRLLLCTQENATEKRITNSDQTKAGLDSSLDVKKNPVQ--CQKYSLQDSSNvSLDDKQCKIEQ--LLNKKSECSTLPL 650
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  647 KQTHIDAEDKNYNDNAA--NINRSGALRHIGFPpmdaqnvlAIYCDNASTD-KAAKEQSSNMPFTGTYNLCPEKINKGIN 723
Cdd:pfam15818  651 KQTSSFQQLCNDTSEKPglTIPCDTVVSHPISP--------AAFSDNLKADlKNSDNNVNIMPMLVKPNSSPGKRTTRKN 722
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  724 VDDVHSKQPE-HDSTEQSGGDESMCTLNAEAMSPVKAHDLDTTVQKVPADGIDVDKL----NEEIQIQSIKNEHSLDIND 798
Cdd:pfam15818  723 LDDMQSSQFKnCLGGLENGVTISHLQVNNENSHASQAKDLKTAVHPKTSTEIQFSSKesqiDENQITEATKNDLFLLVNV 802
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  799 DSINNSMLK--QEKDSVHSTVPGRKFAEGHLKESCSLPMRTSGNLVNASGRSSFDLSNSDKKAEKTSVCFKFLGLSSCSR 876
Cdd:pfam15818  803 NERQHTLLNntEKTESLNDIVSGKIYSEGQLEESHSFHIKPSGDLVNRSGRSAFDLSTSDKKTEKTPVYLNFLDPSPWSK 882
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  877 VNQMRSQATWTSSSQEPSVLKEKLPCLVENKKVPSRELFQNVSENVGRKETGPGSTSSNRAADTLNTSRIHRDPQGDPTE 956
Cdd:pfam15818  883 VNQTEGQTVSTSTSSIPLLLKEKPIGPSENTKIISVTLCKNVGVDDVRKDIGPDTTSISRVADTLNNSSIHPDPKGEPSE 962
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  957 EWNAIAKTFYDSSFPTEHVKEGFTALNEQKSSPMTVTSAQSERTLGDEDRFPTHNSTVQSQIEEIEKYLNLETLCSSRKR 1036
Cdd:pfam15818  963 ERNATAKTFYDSSFPTEHVKTEPLKSTVLQSHFQTVKIKDSPDLLKSSPGEDDWQSLITNQITEIEKLLSLENDNQPKKR 1042

                   ....
gi 2024503300 1037 KYED 1040
Cdd:pfam15818 1043 KAEE 1046
 
Name Accession Description Interval E-value
CCDC73 pfam15818
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil ...
24-1040 0e+00

Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil containing proteins. The function is not known. The alternative name is sarcoma antigen NY-SAR-79.


Pssm-ID: 464893 [Multi-domain]  Cd Length: 1048  Bit Score: 950.93  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   24 ETLQHQTDTLQQQNKEAMAAFKKQLQARMFAMEEEKGKYQLAVEIKEKEIDGLKETLKELQISKHTLQKKLNEMDQKLQM 103
Cdd:pfam15818   45 ETLQNQKETLAKQHKEAMAVFKKQLQMKMCALEEEKGKYQLATEIKEKEIEGLKETLKALQVSKYSLQKKVSEMEQKLQL 124
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  104 HLTGREEHNKKLNEVERCYATIACQFGIVKGVHEKLEHSVQEAIQLNKKLTSVNKRQETEISNLKEELKKVTTDLIRSKV 183
Cdd:pfam15818  125 HLLAKEDHHKQLNEIEKYYATITGQFGLVKENHGKLEQNVQEAIQLNKRLSALNKKQESEICSLKKELKKVTSDLIKSKV 204
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  184 TSQHRVGEENINLAAKEKQFQELQQKIRMETAISKRVQEENANIKEEKLEILSSLQCVQKQLQQITQTNVRMESELNALR 263
Cdd:pfam15818  205 TCQYKMGEENINLTIKEQKFQELQERLNMELELNKKINEEITHIQEEKQDIIISFQHMQQLLQQQTQANTEMEAELKALK 284
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  264 EEYQTLERDNELQREKAKENEEKFLNLQNEHEKALRIWKKDEENLRREMDTIKNELNSLKKTQGHLDDCHPPQGNQ---- 339
Cdd:pfam15818  285 ENNQTLERDNELQREKVKENEEKFLNLQNEHEKALGTWKKHVEELNGEINEIKNELSSLKETHIKLQEHYNKLCNQkkfe 364
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  340 HSEQVENLQIHSTVHpvirnsGQEQSKGSEIQAIQKKNDcmpsilrkdnnsghEDEIEVKNTVSFSLSTEELQIEQK--- 416
Cdd:pfam15818  365 EDKKFQNVPEVNNEN------SEMSTEKSENLIIQKYNS--------------EQEIREENTKSFCSDTEYRETEKKkgp 424
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  417 ---------LQVLENGFKDEINVASPLEGKEREVSPRNTLCTDTDLITQGQNseMHVTECKEAENLETTCRVLLEGNSAN 487
Cdd:pfam15818  425 pveeiiiedLQVLEKSFKNEIDTSVPQDKNQSEISLSKTLCTDKDLISQGQT--LNVTDFRKSVTTEIKDKLCLEKDNGC 502
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  488 LQQKLQDSTGPAAPHHTETSKVLLDAADRVIVSDKNAIQEMNSSNQELCSTTHESICTKvdknssiiELNSSVLTTKASK 567
Cdd:pfam15818  503 SEFKSPNNLFLVADQSIETEKIHLESTEGLGLHHADIHLETESNRSSFNGTLNEMAHNT--------NHNKDVSENEPFK 574
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  568 KESEAAVCTEKSAVCERNTDNHQVSEFHFGILSYPKENCQtgYQKCSLLNSDN-NVDNRLCRIERslLNLSDLPRDKFPF 646
Cdd:pfam15818  575 QQFRLLLCTQENATEKRITNSDQTKAGLDSSLDVKKNPVQ--CQKYSLQDSSNvSLDDKQCKIEQ--LLNKKSECSTLPL 650
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  647 KQTHIDAEDKNYNDNAA--NINRSGALRHIGFPpmdaqnvlAIYCDNASTD-KAAKEQSSNMPFTGTYNLCPEKINKGIN 723
Cdd:pfam15818  651 KQTSSFQQLCNDTSEKPglTIPCDTVVSHPISP--------AAFSDNLKADlKNSDNNVNIMPMLVKPNSSPGKRTTRKN 722
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  724 VDDVHSKQPE-HDSTEQSGGDESMCTLNAEAMSPVKAHDLDTTVQKVPADGIDVDKL----NEEIQIQSIKNEHSLDIND 798
Cdd:pfam15818  723 LDDMQSSQFKnCLGGLENGVTISHLQVNNENSHASQAKDLKTAVHPKTSTEIQFSSKesqiDENQITEATKNDLFLLVNV 802
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  799 DSINNSMLK--QEKDSVHSTVPGRKFAEGHLKESCSLPMRTSGNLVNASGRSSFDLSNSDKKAEKTSVCFKFLGLSSCSR 876
Cdd:pfam15818  803 NERQHTLLNntEKTESLNDIVSGKIYSEGQLEESHSFHIKPSGDLVNRSGRSAFDLSTSDKKTEKTPVYLNFLDPSPWSK 882
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  877 VNQMRSQATWTSSSQEPSVLKEKLPCLVENKKVPSRELFQNVSENVGRKETGPGSTSSNRAADTLNTSRIHRDPQGDPTE 956
Cdd:pfam15818  883 VNQTEGQTVSTSTSSIPLLLKEKPIGPSENTKIISVTLCKNVGVDDVRKDIGPDTTSISRVADTLNNSSIHPDPKGEPSE 962
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  957 EWNAIAKTFYDSSFPTEHVKEGFTALNEQKSSPMTVTSAQSERTLGDEDRFPTHNSTVQSQIEEIEKYLNLETLCSSRKR 1036
Cdd:pfam15818  963 ERNATAKTFYDSSFPTEHVKTEPLKSTVLQSHFQTVKIKDSPDLLKSSPGEDDWQSLITNQITEIEKLLSLENDNQPKKR 1042

                   ....
gi 2024503300 1037 KYED 1040
Cdd:pfam15818 1043 KAEE 1046
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
23-322 5.20e-11

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 67.00  E-value: 5.20e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   23 LETLQHQTDTLQQQNKEAMAAfKKQLQARMFAMEEEKGKYQLAVEIKEKEIDGLKETLKELQISKHTLQKKLNEMDQKLQ 102
Cdd:TIGR02168  700 LAELRKELEELEEELEQLRKE-LEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELA 778
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  103 MHLTGREEHNKKLNEVERCYATIACQFGIVKGVHEKLEHSVQEAIQLNKKLTSVNKRQETEISNLKEELKKVTTDLIRSk 182
Cdd:TIGR02168  779 EAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESL- 857
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  183 vtsQHRVGEENINLAAKEKQFQELQQKirmetaisKRVQEENANIKEEKLEILSslqcvqKQLQQITQTNVRMESELNAL 262
Cdd:TIGR02168  858 ---AAEIEELEELIEELESELEALLNE--------RASLEEALALLRSELEELS------EELRELESKRSELRRELEEL 920
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024503300  263 REEYQTLERD-----NELQREKAKENEEKFLNLQNEHEKALRIwKKDEENLRREMDTIKNELNSL 322
Cdd:TIGR02168  921 REKLAQLELRlegleVRIDNLQERLSEEYSLTLEEAEALENKI-EDDEEEARRRLKRLENKIKEL 984
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
61-326 3.78e-08

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 57.64  E-value: 3.78e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   61 KYQ-LAVEIKEKEIDGLKETLKELQISKHTLQKKLNEMDQKLQMHLTGREEHNKKLNEVERcyatiacqfgivkgVHEKL 139
Cdd:COG1196    214 RYReLKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRL--------------ELEEL 279
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  140 EHSVQEAIQLNKKLTSVNKRQETEISNLKEELKkvttdlirskvtsqhrvgEENINLAAKEKQFQELQQKIRMETAISKR 219
Cdd:COG1196    280 ELELEEAQAEEYELLAELARLEQDIARLEERRR------------------ELEERLEELEEELAELEEELEELEEELEE 341
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  220 VQEENANIKEEKLEILSSLQCVQKQLQQITQTNVRMESELNALREEYQTLERDNELQREKAKENEEKFLNLQNEHEKALR 299
Cdd:COG1196    342 LEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEE 421
                          250       260
                   ....*....|....*....|....*..
gi 2024503300  300 IWKKDEENLRREMDTIKNELNSLKKTQ 326
Cdd:COG1196    422 ELEELEEALAELEEEEEEEEEALEEAA 448
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
56-323 9.44e-06

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 49.68  E-value: 9.44e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   56 EEEKG----KYQLAVEIKEKEIDGLKETLKELQISKHTLQKKLNEMDQKLQMHLTGRE--EHNKKLNEVERcyatiacqf 129
Cdd:PRK03918   447 EEHRKelleEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQlkELEEKLKKYNL--------- 517
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  130 givkgvhEKLEHSVQEAIQLNKKLTSVnkrqETEISNLKEELKKVtTDLIRSKVTSQHRVGEENINLAAKEKQFQELQQK 209
Cdd:PRK03918   518 -------EELEKKAEEYEKLKEKLIKL----KGEIKSLKKELEKL-EELKKKLAELEKKLDELEEELAELLKELEELGFE 585
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  210 IRMEtaISKRVQE---------ENANIKEEKLEILSSLQCVQKQLQQITQTNVRMESELNALREEYQTLERdnELQREKA 280
Cdd:PRK03918   586 SVEE--LEERLKElepfyneylELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEK--KYSEEEY 661
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|...
gi 2024503300  281 KENEEKFLNLQNEHEKAlriwKKDEENLRREMDTIKNELNSLK 323
Cdd:PRK03918   662 EELREEYLELSRELAGL----RAELEELEKRREEIKKTLEKLK 700
 
Name Accession Description Interval E-value
CCDC73 pfam15818
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil ...
24-1040 0e+00

Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil containing proteins. The function is not known. The alternative name is sarcoma antigen NY-SAR-79.


Pssm-ID: 464893 [Multi-domain]  Cd Length: 1048  Bit Score: 950.93  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   24 ETLQHQTDTLQQQNKEAMAAFKKQLQARMFAMEEEKGKYQLAVEIKEKEIDGLKETLKELQISKHTLQKKLNEMDQKLQM 103
Cdd:pfam15818   45 ETLQNQKETLAKQHKEAMAVFKKQLQMKMCALEEEKGKYQLATEIKEKEIEGLKETLKALQVSKYSLQKKVSEMEQKLQL 124
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  104 HLTGREEHNKKLNEVERCYATIACQFGIVKGVHEKLEHSVQEAIQLNKKLTSVNKRQETEISNLKEELKKVTTDLIRSKV 183
Cdd:pfam15818  125 HLLAKEDHHKQLNEIEKYYATITGQFGLVKENHGKLEQNVQEAIQLNKRLSALNKKQESEICSLKKELKKVTSDLIKSKV 204
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  184 TSQHRVGEENINLAAKEKQFQELQQKIRMETAISKRVQEENANIKEEKLEILSSLQCVQKQLQQITQTNVRMESELNALR 263
Cdd:pfam15818  205 TCQYKMGEENINLTIKEQKFQELQERLNMELELNKKINEEITHIQEEKQDIIISFQHMQQLLQQQTQANTEMEAELKALK 284
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  264 EEYQTLERDNELQREKAKENEEKFLNLQNEHEKALRIWKKDEENLRREMDTIKNELNSLKKTQGHLDDCHPPQGNQ---- 339
Cdd:pfam15818  285 ENNQTLERDNELQREKVKENEEKFLNLQNEHEKALGTWKKHVEELNGEINEIKNELSSLKETHIKLQEHYNKLCNQkkfe 364
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  340 HSEQVENLQIHSTVHpvirnsGQEQSKGSEIQAIQKKNDcmpsilrkdnnsghEDEIEVKNTVSFSLSTEELQIEQK--- 416
Cdd:pfam15818  365 EDKKFQNVPEVNNEN------SEMSTEKSENLIIQKYNS--------------EQEIREENTKSFCSDTEYRETEKKkgp 424
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  417 ---------LQVLENGFKDEINVASPLEGKEREVSPRNTLCTDTDLITQGQNseMHVTECKEAENLETTCRVLLEGNSAN 487
Cdd:pfam15818  425 pveeiiiedLQVLEKSFKNEIDTSVPQDKNQSEISLSKTLCTDKDLISQGQT--LNVTDFRKSVTTEIKDKLCLEKDNGC 502
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  488 LQQKLQDSTGPAAPHHTETSKVLLDAADRVIVSDKNAIQEMNSSNQELCSTTHESICTKvdknssiiELNSSVLTTKASK 567
Cdd:pfam15818  503 SEFKSPNNLFLVADQSIETEKIHLESTEGLGLHHADIHLETESNRSSFNGTLNEMAHNT--------NHNKDVSENEPFK 574
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  568 KESEAAVCTEKSAVCERNTDNHQVSEFHFGILSYPKENCQtgYQKCSLLNSDN-NVDNRLCRIERslLNLSDLPRDKFPF 646
Cdd:pfam15818  575 QQFRLLLCTQENATEKRITNSDQTKAGLDSSLDVKKNPVQ--CQKYSLQDSSNvSLDDKQCKIEQ--LLNKKSECSTLPL 650
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  647 KQTHIDAEDKNYNDNAA--NINRSGALRHIGFPpmdaqnvlAIYCDNASTD-KAAKEQSSNMPFTGTYNLCPEKINKGIN 723
Cdd:pfam15818  651 KQTSSFQQLCNDTSEKPglTIPCDTVVSHPISP--------AAFSDNLKADlKNSDNNVNIMPMLVKPNSSPGKRTTRKN 722
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  724 VDDVHSKQPE-HDSTEQSGGDESMCTLNAEAMSPVKAHDLDTTVQKVPADGIDVDKL----NEEIQIQSIKNEHSLDIND 798
Cdd:pfam15818  723 LDDMQSSQFKnCLGGLENGVTISHLQVNNENSHASQAKDLKTAVHPKTSTEIQFSSKesqiDENQITEATKNDLFLLVNV 802
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  799 DSINNSMLK--QEKDSVHSTVPGRKFAEGHLKESCSLPMRTSGNLVNASGRSSFDLSNSDKKAEKTSVCFKFLGLSSCSR 876
Cdd:pfam15818  803 NERQHTLLNntEKTESLNDIVSGKIYSEGQLEESHSFHIKPSGDLVNRSGRSAFDLSTSDKKTEKTPVYLNFLDPSPWSK 882
                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  877 VNQMRSQATWTSSSQEPSVLKEKLPCLVENKKVPSRELFQNVSENVGRKETGPGSTSSNRAADTLNTSRIHRDPQGDPTE 956
Cdd:pfam15818  883 VNQTEGQTVSTSTSSIPLLLKEKPIGPSENTKIISVTLCKNVGVDDVRKDIGPDTTSISRVADTLNNSSIHPDPKGEPSE 962
                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  957 EWNAIAKTFYDSSFPTEHVKEGFTALNEQKSSPMTVTSAQSERTLGDEDRFPTHNSTVQSQIEEIEKYLNLETLCSSRKR 1036
Cdd:pfam15818  963 ERNATAKTFYDSSFPTEHVKTEPLKSTVLQSHFQTVKIKDSPDLLKSSPGEDDWQSLITNQITEIEKLLSLENDNQPKKR 1042

                   ....
gi 2024503300 1037 KYED 1040
Cdd:pfam15818 1043 KAEE 1046
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
23-322 5.20e-11

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 67.00  E-value: 5.20e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   23 LETLQHQTDTLQQQNKEAMAAfKKQLQARMFAMEEEKGKYQLAVEIKEKEIDGLKETLKELQISKHTLQKKLNEMDQKLQ 102
Cdd:TIGR02168  700 LAELRKELEELEEELEQLRKE-LEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELA 778
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  103 MHLTGREEHNKKLNEVERCYATIACQFGIVKGVHEKLEHSVQEAIQLNKKLTSVNKRQETEISNLKEELKKVTTDLIRSk 182
Cdd:TIGR02168  779 EAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESL- 857
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  183 vtsQHRVGEENINLAAKEKQFQELQQKirmetaisKRVQEENANIKEEKLEILSslqcvqKQLQQITQTNVRMESELNAL 262
Cdd:TIGR02168  858 ---AAEIEELEELIEELESELEALLNE--------RASLEEALALLRSELEELS------EELRELESKRSELRRELEEL 920
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024503300  263 REEYQTLERD-----NELQREKAKENEEKFLNLQNEHEKALRIwKKDEENLRREMDTIKNELNSL 322
Cdd:TIGR02168  921 REKLAQLELRlegleVRIDNLQERLSEEYSLTLEEAEALENKI-EDDEEEARRRLKRLENKIKEL 984
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
16-330 6.11e-11

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 67.00  E-value: 6.11e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   16 ISVLCLVLETLQHQTDTLQQQnKEAMAAFKKQLQARMFAMEEEKGKYQLAVEIKEKEIDGLKETLKELQISKHTLQKKLN 95
Cdd:TIGR02168  227 LALLVLRLEELREELEELQEE-LKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQ 305
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   96 EMDQKLQMHLTGREEHNKKLNEVERcyatiacqfgivkgvheKLEHSVQEAIQLNKKLTSVNKRQEtEISNLKEELKKVT 175
Cdd:TIGR02168  306 ILRERLANLERQLEELEAQLEELES-----------------KLDELAEELAELEEKLEELKEELE-SLEAELEELEAEL 367
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  176 TDLIRSKVTSQHRVGEENINLAAKEKQFQELQQKI-RMETAISkRVQEENANIKEEKLEILSSLQCVQKQLQQitQTNVR 254
Cdd:TIGR02168  368 EELESRLEELEEQLETLRSKVAQLELQIASLNNEIeRLEARLE-RLEDRRERLQQEIEELLKKLEEAELKELQ--AELEE 444
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2024503300  255 MESELNALREEYQTLERDNELQREKAKENEEKFLNLQNEHEKA---LRIWKKDEENLRREMDTIKNELNSLKKTQGHLD 330
Cdd:TIGR02168  445 LEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLqarLDSLERLQENLEGFSEGVKALLKNQSGLSGILG 523
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
46-322 1.54e-10

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 65.46  E-value: 1.54e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   46 KQLQARMFAMEEEKGKYQLAVEIKEKEIDGLKETLKELQISKHTLQKKLNEMDQKLQMHltgREEHNKKLNEVERCYATI 125
Cdd:TIGR02168  680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL---EAEVEQLEERIAQLSKEL 756
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  126 ACQFGIVKGVHEKLEHSVQEAIQLNKKLTSVNKRQET---EISNLKEELKKVTTDLIRSKV---TSQHRVGEENINLAAK 199
Cdd:TIGR02168  757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQlkeELKALREALDELRAELTLLNEeaaNLRERLESLERRIAAT 836
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  200 EKQFQELQQKIRMETAISKRVQEENANIKEEKLEILSSLQCVQKQLQQitqtnvrMESELNALREEYQTLERDNELQREK 279
Cdd:TIGR02168  837 ERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAS-------LEEALALLRSELEELSEELRELESK 909
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|...
gi 2024503300  280 AKENEEKFLNLQNEHEKAlriwKKDEENLRREMDTIKNELNSL 322
Cdd:TIGR02168  910 RSELRRELEELREKLAQL----ELRLEGLEVRIDNLQERLSEE 948
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
15-324 3.56e-10

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 64.32  E-value: 3.56e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   15 NISVLCLVLETLQHQTDTLQQQNKEAMA--AFKKQLQARMF--------AMEEEKGKYQLAVEIKEKEIDGLKETLKELQ 84
Cdd:TIGR02169  185 NIERLDLIIDEKRQQLERLRREREKAERyqALLKEKREYEGyellkekeALERQKEAIERQLASLEEELEKLTEEISELE 264
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   85 ISKHTLQKKLNEMDQKLqmhltgreehnKKLNEVErcYATIACQFGIVKGVHEKLEHSVQEAIQLNKKLTSVNKRQETEI 164
Cdd:TIGR02169  265 KRLEEIEQLLEELNKKI-----------KDLGEEE--QLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEI 331
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  165 SNLKEELKKVTTDLIRSKVtSQHRVGEENINLAAK-EKQFQELQQ---KIRMETAISKRVQEENANIKEEKLEILSSLQC 240
Cdd:TIGR02169  332 DKLLAEIEELEREIEEERK-RRDKLTEEYAELKEElEDLRAELEEvdkEFAETRDELKDYREKLEKLKREINELKRELDR 410
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  241 VQKQLQQITQTNVRMESELNALREEYQTLERDNELQREKAKENEEKFLNLQNEHEKAlriwKKDEENLRREMDTIKNELN 320
Cdd:TIGR02169  411 LQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKY----EQELYDLKEEYDRVEKELS 486

                   ....
gi 2024503300  321 SLKK 324
Cdd:TIGR02169  487 KLQR 490
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
23-286 1.06e-09

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 62.78  E-value: 1.06e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   23 LETLQHQTDTLQQQnKEAMAAFKKQLQARMFAMEEEKGKYQLAVE------------IKEKEIDGLKETLKELQISKHTL 90
Cdd:TIGR02169  739 LEELEEDLSSLEQE-IENVKSELKELEARIEELEEDLHKLEEALNdlearlshsripEIQAELSKLEEEVSRIEARLREI 817
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   91 QKKLNEMDQKLQMhltGREEHNKKLNEVERCYATIAcqfgivkgvheklehSVQEAIQLNK----KLTSVNKRQETEISN 166
Cdd:TIGR02169  818 EQKLNRLTLEKEY---LEKEIQELQEQRIDLKEQIK---------------SIEKEIENLNgkkeELEEELEELEAALRD 879
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  167 LKEELKKVTTDliRSKVTSQHRVGEENINLAAKEKQFQELQQKIRMETAisKRVQEENANIKEEKLEILS------SLQC 240
Cdd:TIGR02169  880 LESRLGDLKKE--RDELEAQLRELERKIEELEAQIEKKRKRLSELKAKL--EALEEELSEIEDPKGEDEEipeeelSLED 955
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*..
gi 2024503300  241 VQKQLQQITQTNVRMESELNALREEYQ-TLERDNELQREKAKENEEK 286
Cdd:TIGR02169  956 VQAELQRVEEEIRALEPVNMLAIQEYEeVLKRLDELKEKRAKLEEER 1002
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
57-331 2.68e-09

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 61.62  E-value: 2.68e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   57 EEKGKYQLAVEIKEKEIDGLKETLKELQISKHT------LQKKLNEMDQKLqmHLTGREEHNKKLNEVERCYATIACQfg 130
Cdd:TIGR02169  177 EELEEVEENIERLDLIIDEKRQQLERLRREREKaeryqaLLKEKREYEGYE--LLKEKEALERQKEAIERQLASLEEE-- 252
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  131 iVKGVHEKLEHSVQEAIQLNKKLTSVNKR----QETEISNLKEELKKVTTDLIRSKVtsqhrvgeeniNLAAKEKQFQEL 206
Cdd:TIGR02169  253 -LEKLTEEISELEKRLEEIEQLLEELNKKikdlGEEEQLRVKEKIGELEAEIASLER-----------SIAEKERELEDA 320
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  207 QQKIRmetaiskRVQEENANIKEEKLEILSSLQCVQKQLQQITQTNVRMESELNALREEYQTLERDNELQREKAKENEEK 286
Cdd:TIGR02169  321 EERLA-------KLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREK 393
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*...
gi 2024503300  287 FLNLQNEHEKALRIWKKDEENLRR---EMDTIKNELNSLKKTQGHLDD 331
Cdd:TIGR02169  394 LEKLKREINELKRELDRLQEELQRlseELADLNAAIAGIEAKINELEE 441
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
61-326 3.78e-08

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 57.64  E-value: 3.78e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   61 KYQ-LAVEIKEKEIDGLKETLKELQISKHTLQKKLNEMDQKLQMHLTGREEHNKKLNEVERcyatiacqfgivkgVHEKL 139
Cdd:COG1196    214 RYReLKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRL--------------ELEEL 279
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  140 EHSVQEAIQLNKKLTSVNKRQETEISNLKEELKkvttdlirskvtsqhrvgEENINLAAKEKQFQELQQKIRMETAISKR 219
Cdd:COG1196    280 ELELEEAQAEEYELLAELARLEQDIARLEERRR------------------ELEERLEELEEELAELEEELEELEEELEE 341
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  220 VQEENANIKEEKLEILSSLQCVQKQLQQITQTNVRMESELNALREEYQTLERDNELQREKAKENEEKFLNLQNEHEKALR 299
Cdd:COG1196    342 LEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEE 421
                          250       260
                   ....*....|....*....|....*..
gi 2024503300  300 IWKKDEENLRREMDTIKNELNSLKKTQ 326
Cdd:COG1196    422 ELEELEEALAELEEEEEEEEEALEEAA 448
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
158-331 2.23e-07

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 55.33  E-value: 2.23e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  158 KRQETEISNLKEELKKVTTDLIRSKVTSQH---RVGEENINLAAKEKQFQELQQKIRMETAISKRVQEENANIKEEKLEI 234
Cdd:COG1196    235 RELEAELEELEAELEELEAELEELEAELAEleaELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  235 LSSLQCVQKQLQQITQTNVRMESELNALREEYQTLERDNELQREKAKENEEKFLNLQNEHEKALRIWKKDEENLRREMDT 314
Cdd:COG1196    315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA 394
                          170
                   ....*....|....*..
gi 2024503300  315 IKNELNSLKKTQGHLDD 331
Cdd:COG1196    395 AAELAAQLEELEEAEEA 411
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
87-374 4.28e-07

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 54.29  E-value: 4.28e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   87 KHTLQKKLNEMDQKLQMHLTGREEHNKKLNEVERcYATIACQFgivKGVHEKLEH-----SVQEAIQLNKKLTSVN---K 158
Cdd:TIGR02168  174 RKETERKLERTRENLDRLEDILNELERQLKSLER-QAEKAERY---KELKAELRElelalLVLRLEELREELEELQeelK 249
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  159 RQETEISNLKEELKKVTTDL--IRSKVTS--------QHRVGEENINLAAKEKQFQELQQKIRMETAISKRVQEENANIK 228
Cdd:TIGR02168  250 EAEEELEELTAELQELEEKLeeLRLEVSEleeeieelQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELE 329
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  229 EEKLEILSSLQCVQKQLQQITQTNVRMESELNALREEYQTLERDNELQREKAKENEEKFLNLQNEHEKAlriwKKDEENL 308
Cdd:TIGR02168  330 SKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASL----NNEIERL 405
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2024503300  309 RREMDTIKNELNSLKKTQ-GHLDDCHPPQGNQHSEQVENL--QIHSTVHPVIRNSGQEQSKGSEIQAIQ 374
Cdd:TIGR02168  406 EARLERLEDRRERLQQEIeELLKKLEEAELKELQAELEELeeELEELQEELERLEEALEELREELEEAE 474
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
25-324 1.18e-06

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 52.81  E-value: 1.18e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   25 TLQHQTDTLQQQNKEAMAAFKKQL--------QARMfAMEEEKGKYQLAVEIKEKEIDGLKETLKELQISKHTLQKKLNE 96
Cdd:pfam15921  296 SIQSQLEIIQEQARNQNSMYMRQLsdlestvsQLRS-ELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGN 374
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   97 MDQKLQ-----MH-----LTGREEHNKKL----------------------NEVERCYATIACQFGIVKGVHEKLEHSVQ 144
Cdd:pfam15921  375 LDDQLQklladLHkrekeLSLEKEQNKRLwdrdtgnsitidhlrrelddrnMEVQRLEALLKAMKSECQGQMERQMAAIQ 454
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  145 EAIQLNKKLTSVNKRQETEisnlKEELKKVTTDLIRSKVT---SQHRVGEENINLAAKEK------------------QF 203
Cdd:pfam15921  455 GKNESLEKVSSLTAQLEST----KEMLRKVVEELTAKKMTlesSERTVSDLTASLQEKERaieatnaeitklrsrvdlKL 530
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  204 QELQQkIRMETAISKRVQEENANIKEEKLEILSSLQCVQKQLQQITQ--------------TNVRMESELNALREEYQTL 269
Cdd:pfam15921  531 QELQH-LKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQlvgqhgrtagamqvEKAQLEKEINDRRLELQEF 609
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024503300  270 ERDNELQREKAKENEE----------KFLNLQNEHEKALRIWKKDEENLRREMDTIKNELNSLKK 324
Cdd:pfam15921  610 KILKDKKDAKIRELEArvsdlelekvKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSE 674
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
70-299 7.95e-06

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 49.44  E-value: 7.95e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   70 EKEIDGLKETLKELQISKHTLQKKLNEMDQKLqmhltgrEEHNKKLNEVErcyatiacqfgivkgvhEKLEHSVQEAIQL 149
Cdd:COG3883     15 DPQIQAKQKELSELQAELEAAQAELDALQAEL-------EELNEEYNELQ-----------------AELEALQAEIDKL 70
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  150 NKKLTsvnkRQETEISNLKEELKKvttdLIRSKVTSQHRVGEENINLAAKEkqFQELQQKIRMETAISKRVQEENANIKE 229
Cdd:COG3883     71 QAEIA----EAEAEIEERREELGE----RARALYRSGGSVSYLDVLLGSES--FSDFLDRLSALSKIADADADLLEELKA 140
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024503300  230 EKLEILSSLQCVQKQLQQITQTNVRMES---ELNALREEYQTLERDNELQREKAKENEEKFLNLQNEHEKALR 299
Cdd:COG3883    141 DKAELEAKKAELEAKLAELEALKAELEAakaELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAA 213
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
56-323 9.44e-06

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 49.68  E-value: 9.44e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   56 EEEKG----KYQLAVEIKEKEIDGLKETLKELQISKHTLQKKLNEMDQKLQMHLTGRE--EHNKKLNEVERcyatiacqf 129
Cdd:PRK03918   447 EEHRKelleEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQlkELEEKLKKYNL--------- 517
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  130 givkgvhEKLEHSVQEAIQLNKKLTSVnkrqETEISNLKEELKKVtTDLIRSKVTSQHRVGEENINLAAKEKQFQELQQK 209
Cdd:PRK03918   518 -------EELEKKAEEYEKLKEKLIKL----KGEIKSLKKELEKL-EELKKKLAELEKKLDELEEELAELLKELEELGFE 585
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  210 IRMEtaISKRVQE---------ENANIKEEKLEILSSLQCVQKQLQQITQTNVRMESELNALREEYQTLERdnELQREKA 280
Cdd:PRK03918   586 SVEE--LEERLKElepfyneylELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEK--KYSEEEY 661
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|...
gi 2024503300  281 KENEEKFLNLQNEHEKAlriwKKDEENLRREMDTIKNELNSLK 323
Cdd:PRK03918   662 EELREEYLELSRELAGL----RAELEELEKRREEIKKTLEKLK 700
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
18-250 1.38e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 48.61  E-value: 1.38e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   18 VLCLVLETLQHQTDTLQQQNKEAMAAFK--KQLQARMFAMEEEKGKYQLAVEIKEKEIDGLKETLKELQISKHTLQKKLN 95
Cdd:COG4942      7 LALLLALAAAAQADAAAEAEAELEQLQQeiAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELA 86
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   96 EMDQKLQMHLTGREEHNKKLNEVERCYATIACQFGIVKGVHEKlehSVQEAIQLNKKLTSVNKRQETEIsnlkEELKKVT 175
Cdd:COG4942     87 ELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPE---DFLDAVRRLQYLKYLAPARREQA----EELRADL 159
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024503300  176 TDLIRSKVTSQHRVGEENINLAAKEKQFQELQQKIRMETAISKRVQEENANIKEEKLEILSSLQCVQKQLQQITQ 250
Cdd:COG4942    160 AELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
37-270 2.00e-05

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 48.91  E-value: 2.00e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   37 NKEAMAAFKKQLQARMFAMEEEKGKYQLAVEIKEKEIDGLKETLKEL--QISKHT------LQKKLNEMDQKLQMHLTGR 108
Cdd:TIGR02169  231 EKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELnkKIKDLGeeeqlrVKEKIGELEAEIASLERSI 310
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  109 EEHNKKLNEVERCYATIACQFGIVKGVHEKLEHSVQEAIQLNKKLTSVNKRQETEISNLKEELKKVTTDLIRSKVTS--- 185
Cdd:TIGR02169  311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELkdy 390
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  186 -------QHRVGEENINLAAKEKQFQELQQKIRMETAISKRVQEENANIKEEKLEI----------LSSLQC----VQKQ 244
Cdd:TIGR02169  391 rekleklKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKaleikkqewkLEQLAAdlskYEQE 470
                          250       260
                   ....*....|....*....|....*.
gi 2024503300  245 LQQITQTNVRMESELNALREEYQTLE 270
Cdd:TIGR02169  471 LYDLKEEYDRVEKELSKLQRELAEAE 496
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
22-298 3.59e-05

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 48.04  E-value: 3.59e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   22 VLETLQHQTDTLQQQNKEAMAAFKKQLQARMFAMEEEKGKYQLA-VEIKEKEIDGLKETLKELQISKHTLQ--KKLNEMD 98
Cdd:TIGR00618  234 ALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAvLEETQERINRARKAAPLAAHIKAVTQieQQAQRIH 313
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   99 QKLQMHLTGREEHNKKLNEVERCYATIACQFGIVKGVHEKLEHsvqeaiqlnkkltsvNKRQETEISNLKEELKKVTTDL 178
Cdd:TIGR00618  314 TELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIH---------------IRDAHEVATSIREISCQQHTLT 378
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  179 IRSKVTSQHR-VGEENINLAAKEK-QFQELQQKIRMETAISKRVQEENANIK-EEKLEILSSLQC---VQKQLQQITQTN 252
Cdd:TIGR00618  379 QHIHTLQQQKtTLTQKLQSLCKELdILQREQATIDTRTSAFRDLQGQLAHAKkQQELQQRYAELCaaaITCTAQCEKLEK 458
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*...
gi 2024503300  253 VRMESELNALREEYQTL-ERDNELQREKAKEN-EEKFLNLQNEHEKAL 298
Cdd:TIGR00618  459 IHLQESAQSLKEREQQLqTKEQIHLQETRKKAvVLARLLELQEEPCPL 506
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
25-281 3.75e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 48.13  E-value: 3.75e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   25 TLQHQTDTLQQQNKEAMAAFKKQLQARMFAMEEEKGKYQLAVEIKEKEIDGLKETLKELQISKHTLQKKLNEMDQKLQMH 104
Cdd:TIGR02168  750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESL 829
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  105 LTGREEHNKKLNEVERCYATIACQFGIVKGVHEKLEHSVQEAIQLNKKLTSVNKRQETEISNLKEELKKVTTDL--IRSK 182
Cdd:TIGR02168  830 ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELreLESK 909
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  183 VT--------SQHRVGEENINLAAKEKQFQELQQKIRMETAISKRVQEENANIKEEKLEIL-SSLQCVQKQLQQITQTNV 253
Cdd:TIGR02168  910 RSelrreleeLREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEArRRLKRLENKIKELGPVNL 989
                          250       260
                   ....*....|....*....|....*....
gi 2024503300  254 RMESELNALREEYQTLER-DNELQREKAK 281
Cdd:TIGR02168  990 AAIEEYEELKERYDFLTAqKEDLTEAKET 1018
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
22-480 8.84e-05

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 46.65  E-value: 8.84e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   22 VLETLQHQTDTLQQQNKEAMAAFKKQ----------LQARMFAMEEEKgkyQLAVEIKEKEI-------DGLKETLKELQ 84
Cdd:pfam15921   79 VLEEYSHQVKDLQRRLNESNELHEKQkfylrqsvidLQTKLQEMQMER---DAMADIRRRESqsqedlrNQLQNTVHELE 155
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   85 ISKHTLQKKLNEMDQKLQMHLTGREEHNKKLNEVErcyaTIACQFGIVKG--VHEKLEHSVQEAIQLNKKLTSVNKRQET 162
Cdd:pfam15921  156 AAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIR----SILVDFEEASGkkIYEHDSMSTMHFRSLGSAISKILRELDT 231
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  163 EISNLKEELKKVTTDLIRSKVTSQHRVgeeninlaakEKQFQELQQkiRMETAISKR------VQEENANIKEEKLEILS 236
Cdd:pfam15921  232 EISYLKGRIFPVEDQLEALKSESQNKI----------ELLLQQHQD--RIEQLISEHeveitgLTEKASSARSQANSIQS 299
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  237 SLQCVQKQLQQITQTNVR----MESELNALREEYqtlerdnelqREKAKENEEKFlnlqNEHEKALRIWKKDEENLRREM 312
Cdd:pfam15921  300 QLEIIQEQARNQNSMYMRqlsdLESTVSQLRSEL----------REAKRMYEDKI----EELEKQLVLANSELTEARTER 365
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  313 DTIKNELNSL-KKTQGHLDDCHPPQGNQHSEQVENLQIHS-------TVHPVIRNSGQEQSKGSEIQAIQK--KNDCMPS 382
Cdd:pfam15921  366 DQFSQESGNLdDQLQKLLADLHKREKELSLEKEQNKRLWDrdtgnsiTIDHLRRELDDRNMEVQRLEALLKamKSECQGQ 445
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  383 ILRKDNN-SGHEDEIEVKNTVSFSL-STEEL------QIEQKLQVLENGFKDEINVASPLEGKEREVSPRNTLCTD--TD 452
Cdd:pfam15921  446 MERQMAAiQGKNESLEKVSSLTAQLeSTKEMlrkvveELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKlrSR 525
                          490       500
                   ....*....|....*....|....*...
gi 2024503300  453 LITQGQNSEMHVTECKEAENLETTCRVL 480
Cdd:pfam15921  526 VDLKLQELQHLKNEGDHLRNVQTECEAL 553
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
17-330 9.17e-05

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 46.64  E-value: 9.17e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   17 SVLCLVLETLQHQTDTLQQqNKEAMAAFKKQLQARMFAMEE-EKGKYQLAVEIKE-KEIDGLKETLKELQISKHTLQKKL 94
Cdd:pfam05483  356 ATTCSLEELLRTEQQRLEK-NEDQLKIITMELQKKSSELEEmTKFKNNKEVELEElKKILAEDEKLLDEKKQFEKIAEEL 434
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   95 NEMDQKLQMHLTGREEHNKKLnEVERCYATIACQFGI--VKGVHEKLEHSVQEAIQLN---KKLTSVNKRQETEISNLKE 169
Cdd:pfam05483  435 KGKEQELIFLLQAREKEIHDL-EIQLTAIKTSEEHYLkeVEDLKTELEKEKLKNIELTahcDKLLLENKELTQEASDMTL 513
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  170 ELKKVTTDLIRSKvTSQHRVGEENINLAAKEKQFQELQQKIRMETaISKRVQ--------EENAN------IKEEKLEIL 235
Cdd:pfam05483  514 ELKKHQEDIINCK-KQEERMLKQIENLEEKEMNLRDELESVREEF-IQKGDEvkckldksEENARsieyevLKKEKQMKI 591
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  236 SSLQC--VQKQLQQITQTNVRMESELNALREE----------YQTLERDNELQREKAKEneeKFLNLQNEHEKALRIWKK 303
Cdd:pfam05483  592 LENKCnnLKKQIENKNKNIEELHQENKALKKKgsaenkqlnaYEIKVNKLELELASAKQ---KFEEIIDNYQKEIEDKKI 668
                          330       340
                   ....*....|....*....|....*..
gi 2024503300  304 DEENLRREMDTIKNELNSLKKTQGHLD 330
Cdd:pfam05483  669 SEEKLLEEVEKAKAIADEAVKLQKEID 695
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
71-324 1.06e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 45.91  E-value: 1.06e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   71 KEIDGLKETLKELQISKHTLQKKLNEMDQKLQMHLTGREEHNKKLNEVERcyatiacqfgivkgvheKLEHSVQEAIQLN 150
Cdd:COG4942     20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALAR-----------------RIRALEQELAALE 82
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  151 KKLTSVNKRQETeisnLKEELKKVTTDLIRSKVTSQHRVGEENINLAAKEKQFQELQQKIRMETAISKRVQEENANIKEE 230
Cdd:COG4942     83 AELAELEKEIAE----LRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRAD 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  231 kleilsslqcvQKQLQQITQtnvrmesELNALREEYQTLERDNELQREKAKENEEKFLNLQNEHEKALRIWKKDEENLRR 310
Cdd:COG4942    159 -----------LAELAALRA-------ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQ 220
                          250
                   ....*....|....
gi 2024503300  311 EMDTIKNELNSLKK 324
Cdd:COG4942    221 EAEELEALIARLEA 234
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
26-328 1.33e-04

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 46.26  E-value: 1.33e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   26 LQHQTDTLQQQNK--EAMAAFKKQLQAR---MFAMEEEKGKYQLAVEIKEKEIDGLKETLKE----LQISKHTLQKKLNE 96
Cdd:pfam15921  446 MERQMAAIQGKNEslEKVSSLTAQLESTkemLRKVVEELTAKKMTLESSERTVSDLTASLQEkeraIEATNAEITKLRSR 525
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   97 MDQKLQ--MHLTGREEHNKKLN-EVERCYATIACQFGIVKGVHEKLEHSVQEAIQLNKKLTS--VNKRQ-ETEISNLKEE 170
Cdd:pfam15921  526 VDLKLQelQHLKNEGDHLRNVQtECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAmqVEKAQlEKEINDRRLE 605
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  171 LKKVTtdLIRSKVTSQHRvgeeniNLAAKEKQFQelQQKIRMETAISKRVQEENaNIKEEKLEILSSLQCVQkqlqqitq 250
Cdd:pfam15921  606 LQEFK--ILKDKKDAKIR------ELEARVSDLE--LEKVKLVNAGSERLRAVK-DIKQERDQLLNEVKTSR-------- 666
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2024503300  251 tnvrmeSELNALREEYQTLERDnelqrekakeneekFLNLQNEHEKALRIWKKDEENLRREMDTIKNELNSLKKTQGH 328
Cdd:pfam15921  667 ------NELNSLSEDYEVLKRN--------------FRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGH 724
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
53-326 1.35e-04

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 46.21  E-value: 1.35e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   53 FAMEEEKGKYQLAVEIKEK------EIDGLKETLKELQiskhTLQKKLNEMDQKLQMHLTGREEHNKKLNEVercyatia 126
Cdd:PRK03918   515 YNLEELEKKAEEYEKLKEKliklkgEIKSLKKELEKLE----ELKKKLAELEKKLDELEEELAELLKELEEL-------- 582
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  127 cQFGIVKGVHEKLEhSVQEAiqLNKKLTSVNKRQETEIsnLKEELKKVTTDLIRSKVtsqhrvgeeniNLAAKEKQFQEL 206
Cdd:PRK03918   583 -GFESVEELEERLK-ELEPF--YNEYLELKDAEKELER--EEKELKKLEEELDKAFE-----------ELAETEKRLEEL 645
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  207 QQKIrmETAISKRVQEENANIKEEKLEILSSLQCVQKQLQQITQTNVRMESELNALREEYQTlerdnelqREKAKENEEK 286
Cdd:PRK03918   646 RKEL--EELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEE--------REKAKKELEK 715
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|..
gi 2024503300  287 FlnlqnehEKALriwkKDEENLRREMDTIKNEL--NSLKKTQ 326
Cdd:PRK03918   716 L-------EKAL----ERVEELREKVKKYKALLkeRALSKVG 746
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
26-278 1.59e-04

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 45.78  E-value: 1.59e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   26 LQHQTDTLQQQNKEAMAAFKKQLQarmfameeekgKYQLAVEIKEKEIDGLKETLKELQISKHT--LQKKLNEMDQKLQM 103
Cdd:COG3206    162 LEQNLELRREEARKALEFLEEQLP-----------ELRKELEEAEAALEEFRQKNGLVDLSEEAklLLQQLSELESQLAE 230
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  104 HLTGREEHNKKLNEVERcyatiacqfgivkgvheKLEHSVQEAIQLNkkltsvnkrQETEISNLKEELKKVTTDL--IRS 181
Cdd:COG3206    231 ARAELAEAEARLAALRA-----------------QLGSGPDALPELL---------QSPVIQQLRAQLAELEAELaeLSA 284
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  182 KVTSQHRvgeeninlaakekQFQELQQKIR-METAISKRVQEENANIKEEKLEILSSLQCVQKQLQQITQtnvRMeSELN 260
Cdd:COG3206    285 RYTPNHP-------------DVIALRAQIAaLRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEA---RL-AELP 347
                          250
                   ....*....|....*...
gi 2024503300  261 ALREEYQTLERDNELQRE 278
Cdd:COG3206    348 ELEAELRRLEREVEVARE 365
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
22-330 2.15e-04

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 45.34  E-value: 2.15e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   22 VLETLQHQTDT-------LQQQNKEAMAAFKKQLQARMFAMEEEKGKYQLAVEIKeKEIDGLKETLKELQISKHTLQKKL 94
Cdd:TIGR00618  543 SEEDVYHQLTSerkqrasLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQ-DLTEKLSEAEDMLACEQHALLRKL 621
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   95 NEMDQKLQMHLTGR---EEHNKKLNEVERCYATIAcqfgivkgvHEKLEHSVQEAIQLNKKLTSVNKRQETEISNLKEEL 171
Cdd:TIGR00618  622 QPEQDLQDVRLHLQqcsQELALKLTALHALQLTLT---------QERVREHALSIRVLPKELLASRQLALQKMQSEKEQL 692
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  172 K--KVTTDLIRSKVTSQHRVGEENinlaakEKQFQELQQKirMETAISKRVQEENA-NIKEEKLEILSSLQCvqKQLQQI 248
Cdd:TIGR00618  693 TywKEMLAQCQTLLRELETHIEEY------DREFNEIENA--SSSLGSDLAAREDAlNQSLKELMHQARTVL--KARTEA 762
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  249 TQTNVRMESELNALREEYQTLERDNELQREKAKENEEKFLNLQNEHEKALR----IWKKDEENLRREMDTIKNELNSLKK 324
Cdd:TIGR00618  763 HFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPsdedILNLQCETLVQEEEQFLSRLEEKSA 842

                   ....*.
gi 2024503300  325 TQGHLD 330
Cdd:TIGR00618  843 TLGEIT 848
CCDC22 pfam05667
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ...
23-223 2.30e-04

Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.


Pssm-ID: 461708 [Multi-domain]  Cd Length: 600  Bit Score: 45.02  E-value: 2.30e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   23 LETLQHQTDTLQQQnKEAMAAFKKQLQARMFAMEEEKGKYQLAVEIKEKEIDGLKETLKEL-----QISKhtLQKKLNEM 97
Cdd:pfam05667  337 LEELQEQLEDLESS-IQELEKEIKKLESSIKQVEEELEELKEQNEELEKQYKVKKKTLDLLpdaeeNIAK--LQALVDAS 413
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   98 DQKLQmHLTG----------------REEHNKKLNEVERCYATIacqfgivKGVHEKLEHSVQEAiqlnkkltsvnKRQE 161
Cdd:pfam05667  414 AQRLV-ELAGqwekhrvplieeyralKEAKSNKEDESQRKLEEI-------KELREKIKEVAEEA-----------KQKE 474
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024503300  162 TEISNLKEELKKVTTDLIRSKVTSqhRVGE--ENInlaakEKQFQELqQKIRMETaisKRVQEE 223
Cdd:pfam05667  475 ELYKQLVAEYERLPKDVSRSAYTR--RILEivKNI-----KKQKEEI-TKILSDT---KSLQKE 527
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
196-329 2.83e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 44.37  E-value: 2.83e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  196 LAAKEKQFQELQQKIRMETAISKRVQEENANIKEEKLEILSSLQCVQKQLQQITQTNVRMESELNALREEYQTLERDNEL 275
Cdd:COG4942     22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA 101
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2024503300  276 QREKAKE-----------NEEKFLNLQ---NEHEKALRIWKKDEENLRREMDTIKNELNSLKKTQGHL 329
Cdd:COG4942    102 QKEELAEllralyrlgrqPPLALLLSPedfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
22-270 3.02e-04

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 45.11  E-value: 3.02e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   22 VLETLQHQTDTLQQ------QNKEAMAAFKKQLQARMFAMEEEKGKYQLAVEIKEKEIDGLKETLKELQISKHTLqkkLN 95
Cdd:pfam15921  563 VIEILRQQIENMTQlvgqhgRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKL---VN 639
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   96 EMDQKLQMHLTGREEHNKKLNEVERCyatiacqfgivkgvHEKLEHSVQEAIQLNKKLTSVNKRQETEISNLKEELKKVT 175
Cdd:pfam15921  640 AGSERLRAVKDIKQERDQLLNEVKTS--------------RNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQ 705
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  176 TDLIRSKVTSQHRVGEE----------NINLAAKEKQFQELQQKIRMETAISKRVQEENANIKEEKLEILSSLQCVQkql 245
Cdd:pfam15921  706 SELEQTRNTLKSMEGSDghamkvamgmQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVA--- 782
                          250       260
                   ....*....|....*....|....*
gi 2024503300  246 qqiTQTNvRMESELNALREEYQTLE 270
Cdd:pfam15921  783 ---TEKN-KMAGELEVLRSQERRLK 803
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
42-251 3.12e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 44.76  E-value: 3.12e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   42 AAFKKQLQARMFAMEEEKGKyqlAVEIKEKEIDGLKETLKELQISKHTLQKKLNEMDQkLQMHLTGREEHNKKLNEVERC 121
Cdd:COG4717     45 AMLLERLEKEADELFKPQGR---KPELNLKELKELEEELKEAEEKEEEYAELQEELEE-LEEELEELEAELEELREELEK 120
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  122 YATIACQFGIVKGVHE---KLEHSVQEAIQLNKKLTSVnKRQETEISNLKEELKKVTTDLIRSKVTSQHRVGEEninLAA 198
Cdd:COG4717    121 LEKLLQLLPLYQELEAleaELAELPERLEELEERLEEL-RELEEELEELEAELAELQEELEELLEQLSLATEEE---LQD 196
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|...
gi 2024503300  199 KEKQFQELQQKIRMETAISKRVQEENANIKEEkLEILSSLQCVQKQLQQITQT 251
Cdd:COG4717    197 LAEELEELQQRLAELEEELEEAQEELEELEEE-LEQLENELEAAALEERLKEA 248
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
136-330 4.41e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 44.52  E-value: 4.41e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  136 HEKLEHSVQEAIQLNKKLTSVNKRQ-----ETEISNLKEELKKVTTDLirskvtsqhrvgeeninlAAKEKQFQELQQKI 210
Cdd:COG4913    264 YAAARERLAELEYLRAALRLWFAQRrlellEAELEELRAELARLEAEL------------------ERLEARLDALREEL 325
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  211 R-METAISKRVQEENANIKEEkleilssLQCVQKQLQQITQTNVRMESELNALREEYQTLERDNELQREKAKENEEKFLN 289
Cdd:COG4913    326 DeLEAQIRGNGGDRLEQLERE-------IERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEE 398
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|.
gi 2024503300  290 LQNEHEKALRIWKKDEENLRREMDTIKNELNSLKKTQGHLD 330
Cdd:COG4913    399 ELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIP 439
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
43-326 6.52e-04

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 43.80  E-value: 6.52e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   43 AFKKQLQARMFAMEEEKGKYQLAVEIKEKEIDGLKETLKELQISKHTLQKKLNEMDQKLQMHltgreehnKKLNEVERCY 122
Cdd:TIGR00618  198 LLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQ--------QLLKQLRARI 269
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  123 ATIACQFGIVKGVHEKLEHSVQEA--IQLNKKLTSVNKRQETEISNLKEELKKVTTDLIRSKVTSQHRvgeeninlAAKE 200
Cdd:TIGR00618  270 EELRAQEAVLEETQERINRARKAAplAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQ--------SSIE 341
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  201 KQFQELQQKIRMETAIsKRVQEENANIKEEKLEILSSLQCVQKQLQQIT---QTNVRMESELNALREEYQTLE----RDN 273
Cdd:TIGR00618  342 EQRRLLQTLHSQEIHI-RDAHEVATSIREISCQQHTLTQHIHTLQQQKTtltQKLQSLCKELDILQREQATIDtrtsAFR 420
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 2024503300  274 ELQREKAK-----ENEEKFLNLQNEH-EKALRIWKKDEENLRREMDTIKNELNSLKKTQ 326
Cdd:TIGR00618  421 DLQGQLAHakkqqELQQRYAELCAAAiTCTAQCEKLEKIHLQESAQSLKEREQQLQTKE 479
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
144-331 7.39e-04

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 43.60  E-value: 7.39e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  144 QEAIQLNKKLTSVNKRQETEISNLKEELK--KVTTDLIRSKVTSQHRVGEEninLAAKEKQFQELQQKIR-METAISKR- 219
Cdd:COG4717     53 KEADELFKPQGRKPELNLKELKELEEELKeaEEKEEEYAELQEELEELEEE---LEELEAELEELREELEkLEKLLQLLp 129
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  220 VQEENANIKEEKLEILSSLQCVQKQLQQITQtnvrMESELNALREEYQTLERD-NELQREKAKENEEKFLNLQNEHE--- 295
Cdd:COG4717    130 LYQELEALEAELAELPERLEELEERLEELRE----LEEELEELEAELAELQEElEELLEQLSLATEEELQDLAEELEelq 205
                          170       180       190
                   ....*....|....*....|....*....|....*.
gi 2024503300  296 KALRIWKKDEENLRREMDTIKNELNSLKKTQGHLDD 331
Cdd:COG4717    206 QRLAELEEELEEAQEELEELEEELEQLENELEAAAL 241
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
229-331 8.17e-04

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 42.22  E-value: 8.17e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  229 EEKLEILSSLQCVQKQLQQITQTNVRMESELNALREEYQTLERDNELQREKAKENEEKFLNLQNEHEKALRIWKKDEENL 308
Cdd:COG1579      3 PEDLRALLDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQL 82
                           90       100
                   ....*....|....*....|....*...
gi 2024503300  309 R-----REMDTIKNELNSLKKTQGHLDD 331
Cdd:COG1579     83 GnvrnnKEYEALQKEIESLKRRISDLED 110
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
24-324 8.37e-04

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 43.56  E-value: 8.37e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   24 ETLQHQTDTLQQQNKEAMAAFKKQLQARM---FAMEEEKGKYQLAVEIKEKEIDGLKETLKELQISKHTLQKKLNEMDQK 100
Cdd:pfam05483  317 EDLQIATKTICQLTEEKEAQMEELNKAKAahsFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEM 396
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  101 LQMHlTGREEHNKKLNEVERCYATIACQFGIVKGVHEKLEHSVQEaiqlnkkLTSVNKRQETEISNLKEELKKVTTD--- 177
Cdd:pfam05483  397 TKFK-NNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQE-------LIFLLQAREKEIHDLEIQLTAIKTSeeh 468
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  178 ---LIRSKVTSQHRVGEENINLAAKEKQF----QELQQKIRMETAISKRVQEENANIKEEKLEILsslqcvqKQLQQITQ 250
Cdd:pfam05483  469 ylkEVEDLKTELEKEKLKNIELTAHCDKLllenKELTQEASDMTLELKKHQEDIINCKKQEERML-------KQIENLEE 541
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024503300  251 TNVRMESELNALREEYQTLERDNELQREKAKENEEKFLNLQNEHEKALRIWKKDEENLRREMDTIKNELNSLKK 324
Cdd:pfam05483  542 KEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQ 615
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
186-329 8.79e-04

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 42.22  E-value: 8.79e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  186 QHRVGEENINLAAKEKQFQELQQKIrmeTAISKRVQEENANIKEEKLEILSslqcVQKQLQQIT--QTNVRMESELNALR 263
Cdd:COG1579     23 EHRLKELPAELAELEDELAALEARL---EAAKTELEDLEKEIKRLELEIEE----VEARIKKYEeqLGNVRNNKEYEALQ 95
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2024503300  264 EEYQTLERDNELQREKAKENEEKFLNLQNEHEKALRIWKKDEENLRREMDTIKNELNSLKKTQGHL 329
Cdd:COG1579     96 KEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEEL 161
COG2433 COG2433
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
191-305 1.01e-03

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


Pssm-ID: 441980 [Multi-domain]  Cd Length: 644  Bit Score: 42.92  E-value: 1.01e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  191 EENINLAAKEKQFQELQQKIrmetaisKRVQEENANIK---EEKLEILSSLQCVQKQLQQITQTNVRMESELNALREEYQ 267
Cdd:COG2433    403 HEERELTEEEEEIRRLEEQV-------ERLEAEVEELEaelEEKDERIERLERELSEARSEERREIRKDREISRLDREIE 475
                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 2024503300  268 TLERdnELQREKaKENEEkflnLQNEHEKALRIWKKDE 305
Cdd:COG2433    476 RLER--ELEEER-ERIEE----LKRKLERLKELWKLEH 506
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
65-324 1.15e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 43.13  E-value: 1.15e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   65 AVEIKEKEIDGLKETLKELQISKHTLQKKLNEMDQKLQMHLTGREEHNKKLNEVERcyatIACQFGIVKGVHEKLEHSVQ 144
Cdd:PRK03918   225 KLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEE----KVKELKELKEKAEEYIKLSE 300
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  145 EAIQLNKKLTSVNKRQET---EISNLKEELKKVTTDLIRSKVTSQHRVGEEN--INLAAKEKQFQELQQKI-RMETAISK 218
Cdd:PRK03918   301 FYEEYLDELREIEKRLSRleeEINGIEERIKELEEKEERLEELKKKLKELEKrlEELEERHELYEEAKAKKeELERLKKR 380
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  219 RVQEENANIKEEKLEILSSLQCVQKQLQQITQTNVRMESELNALREEYQTLER--------DNELQREKAKENEEKFLNL 290
Cdd:PRK03918   381 LTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKakgkcpvcGRELTEEHRKELLEEYTAE 460
                          250       260       270
                   ....*....|....*....|....*....|....
gi 2024503300  291 QNEHEKALRIWKKDEENLRREMDTIKNELNSLKK 324
Cdd:PRK03918   461 LKRIEKELKEIEEKERKLRKELRELEKVLKKESE 494
ERM_helical pfam20492
Ezrin/radixin/moesin, alpha-helical domain; The ERM family consists of three closely-related ...
38-174 1.35e-03

Ezrin/radixin/moesin, alpha-helical domain; The ERM family consists of three closely-related proteins, ezrin, radixin and moesin. Ezrin was first identified as a constituent of microvilli, radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions, and moesin as a heparin binding protein. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain, an extended alpha-helical domain and a charged C-terminal domain (pfam00769). Ezrin, radixin and merlin also contain a polyproline linker region between the helical and C-terminal domains. The N-terminal domain is highly conserved and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily, designated the FERM domain. ERM proteins crosslink actin filaments with plasma membranes. They co-localize with CD44 at actin filament plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains. This is the alpha-helical domain, which is involved in intramolecular masking of protein-protein interaction sites, regulating the activity of this proteins.


Pssm-ID: 466641 [Multi-domain]  Cd Length: 120  Bit Score: 39.52  E-value: 1.35e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   38 KEAMAAFKKQLQARMFAMEEEKGKYQLAVEIKEKEIDGLKETLKELQISKHTLQKKLNEMDQKLQmhltgREEHNKKLNE 117
Cdd:pfam20492    1 REEAEREKQELEERLKQYEEETKKAQEELEESEETAEELEEERRQAEEEAERLEQKRQEAEEEKE-----RLEESAEMEA 75
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2024503300  118 VERcyatiacqfgivkgvhEKLEHSVQEAIQLNKKLTSVNKRQETEISNLKEELKKV 174
Cdd:pfam20492   76 EEK----------------EQLEAELAEAQEEIARLEEEVERKEEEARRLQEELEEA 116
PRK01156 PRK01156
chromosome segregation protein; Provisional
12-330 1.48e-03

chromosome segregation protein; Provisional


Pssm-ID: 100796 [Multi-domain]  Cd Length: 895  Bit Score: 42.58  E-value: 1.48e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   12 LPTNISVLCLVLETLQHQTDTLQQQNKEAmaafkKQLQARMFAMEEEKGKYQLAVEIKEKEIDGLKETLKELQiSKHTLQ 91
Cdd:PRK01156   178 LRAEISNIDYLEEKLKSSNLELENIKKQI-----ADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELS-SLEDMK 251
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   92 KKLNEMDQKLQMHLTGREEHNKKLNEVE------------------RCYATIACQFGIVKGVHEKLEHSVQEAIQLNKKL 153
Cdd:PRK01156   252 NRYESEIKTAESDLSMELEKNNYYKELEerhmkiindpvyknrnyiNDYFKYKNDIENKKQILSNIDAEINKYHAIIKKL 331
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  154 TSVNK--RQETEISNLKEELKKVTTDLIRSKVTSQHRVGE-ENINLaaKEKQFQELQQKIRMETAISKRVQEENAN-IKE 229
Cdd:PRK01156   332 SVLQKdyNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSiESLKK--KIEEYSKNIERMSAFISEILKIQEIDPDaIKK 409
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  230 EKLEILSSLQCVQKQLQQITQTNVRMESELNALREEYQTLERDNELQREKAKENEEKFLNLQNEHEKALRIWKKDEENLR 309
Cdd:PRK01156   410 ELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIE 489
                          330       340
                   ....*....|....*....|.
gi 2024503300  310 REMDTIKNELNSLKKTQGHLD 330
Cdd:PRK01156   490 IEVKDIDEKIVDLKKRKEYLE 510
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
158-331 1.73e-03

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 41.81  E-value: 1.73e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  158 KRQETEISNLKEELKKVTTDLIRSKVTSQhrvgEENINLAAKEKQFQELQQKIRMETAISKRVQEENANIKEEKLEILSS 237
Cdd:COG4372     41 DKLQEELEQLREELEQAREELEQLEEELE----QARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEE 116
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  238 LQCVQKQLQQITQTNVRMESELNALREEYQTLERDNELQREKAKENEEKFLNLQNEHEKAlriwkkDEENLRREMDTIKN 317
Cdd:COG4372    117 LEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQAL------SEAEAEQALDELLK 190
                          170
                   ....*....|....
gi 2024503300  318 ELNSLKKTQGHLDD 331
Cdd:COG4372    191 EANRNAEKEEELAE 204
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
24-277 1.86e-03

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 462303 [Multi-domain]  Cd Length: 488  Bit Score: 42.19  E-value: 1.86e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   24 ETLQHQTDTLQQQNKEAMAAFKKQLQARmfamEEEKGKYQLAVEIKEKEIDGLKETLKELQISKHTLQKKLNEMDQKLQm 103
Cdd:pfam07888   30 ELLQNRLEECLQERAELLQAQEAANRQR----EKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYK- 104
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  104 hltgreehnkklnEVERCYATIACQFGIVKGVHEKLEHSVQEAIQLNKKLTSVNKRQETEISNLKEELKKVTTDLirskv 183
Cdd:pfam07888  105 -------------ELSASSEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQR----- 166
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  184 tsqhrvGEENinlaAKEKQFQ-ELQQKIRMETAISKRVQEENANIKEEKLEILsSLQCVQKQLQQITQTNVRMESELNAL 262
Cdd:pfam07888  167 ------KEEE----AERKQLQaKLQQTEEELRSLSKEFQELRNSLAQRDTQVL-QLQDTITTLTQKLTTAHRKEAENEAL 235
                          250
                   ....*....|....*.
gi 2024503300  263 REEYQTL-ERDNELQR 277
Cdd:pfam07888  236 LEELRSLqERLNASER 251
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
38-331 2.51e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 41.97  E-value: 2.51e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   38 KEAMAAFKKQLQARMFAMEEEKGKYQLAVEIKEKEIDGLKETLKELQISKHTLQKKLNEMDQKLQMHLTGREEHNKKLNE 117
Cdd:PRK03918   351 EKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEE 430
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  118 VERcyATIACQF-GIVKGVHEKLEHSVQEAIQLnKKLTSVNKRQETEISNLKEELKKVTTDLIR-SKVTSQHRVGEENIN 195
Cdd:PRK03918   431 LKK--AKGKCPVcGRELTEEHRKELLEEYTAEL-KRIEKELKEIEEKERKLRKELRELEKVLKKeSELIKLKELAEQLKE 507
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  196 LAAKEKQF--QELQQKirmetaiskrvQEENANIKEEKLEILSSLQCVQKQLqqitqtnvrmeSELNALREEYQTLERD- 272
Cdd:PRK03918   508 LEEKLKKYnlEELEKK-----------AEEYEKLKEKLIKLKGEIKSLKKEL-----------EKLEELKKKLAELEKKl 565
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024503300  273 NELQREKA--------------KENEEKFLNLQNEHEKALRIwKKDEENLRREMDTIKNELNSLKKTQGHLDD 331
Cdd:PRK03918   566 DELEEELAellkeleelgfesvEELEERLKELEPFYNEYLEL-KDAEKELEREEKELKKLEEELDKAFEELAE 637
ANIS5_cation-bd pfam02520
SXP/RAL-2 family protein Ani s 5-like, metal-binding domain; This domain is found in proteins ...
192-266 3.00e-03

SXP/RAL-2 family protein Ani s 5-like, metal-binding domain; This domain is found in proteins from nematodes, including SXP/RAL-2 family protein Ani s 5 (ANIS5) from Anisakis simplex, and comprises two conserved motifs: SXP1 and SXP2. Although the function of this domain is not clear, structural information from ANIS5 revealed an alpha helical arrangement with a Calmodulin-like fold. Functional studies indicates that ANIS5 can bind magnesium and calcium, suggesting that this domain plays a role in cation binding. These proteins are interesting targets to develop control strategies against the diseases caused by parasites.


Pssm-ID: 396877 [Multi-domain]  Cd Length: 107  Bit Score: 38.33  E-value: 3.00e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  192 ENINLAAKEKQFQELQQKIRMETAIS---KRVQEENANIKEEKLEILSSLQCVQKQLQQI----TQTNVRMESELNALRE 264
Cdd:pfam02520   12 ETLTIAEKEEQLAAWAEKYGVTDQYKefqANVTALKEEVKKNVTAVISNLSSVLNQLSAIldnkNQTRAQQHEAIDALKQ 91

                   ..
gi 2024503300  265 EY 266
Cdd:pfam02520   92 QY 93
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
23-176 3.29e-03

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 41.35  E-value: 3.29e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   23 LETLQHQTDTLQQQNKEAMAAFKKQLQArmfAMEEEKGKYQLAVEIKEKEIDGLKETLKELQISKHTLQK---------K 93
Cdd:PRK00409   539 AEALLKEAEKLKEELEEKKEKLQEEEDK---LLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKaheliearkR 615
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   94 LNEMDQKLQMHLTGREEHNKKLNEVERCYATIACQFGIVKGVHEKLEHSVQEAI-QLNKKLTSVNKRQETEisnlKEELK 172
Cdd:PRK00409   616 LNKANEKKEKKKKKQKEKQEELKVGDEVKYLSLGQKGEVLSIPDDKEAIVQAGImKMKVPLSDLEKIQKPK----KKKKK 691

                   ....
gi 2024503300  173 KVTT 176
Cdd:PRK00409   692 KPKT 695
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
180-300 3.34e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 41.44  E-value: 3.34e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  180 RSKVTSQHRVGEENIN-LAAKEKQFQELQQKIRMETAISKRVQEENANIkEEKLEILSSLQCV----------------- 241
Cdd:COG4913    595 RRRIRSRYVLGFDNRAkLAALEAELAELEEELAEAEERLEALEAELDAL-QERREALQRLAEYswdeidvasaereiael 673
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024503300  242 QKQLQQITQTNV---RMESELNALREEYQTLERDNELQREKAKENEEKFLNLQNEHEKALRI 300
Cdd:COG4913    674 EAELERLDASSDdlaALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDR 735
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
51-285 4.01e-03

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 460256 [Multi-domain]  Cd Length: 1081  Bit Score: 41.31  E-value: 4.01e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   51 RMFAMEEEKGKYQLAVEIKEKEIDGLKETLKELQISKHTLQKKLNEMDQKLQMhltgREEHNKKLNEvERcyatiacqfg 130
Cdd:pfam01576   90 RSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILL----LEDQNSKLSK-ER---------- 154
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  131 ivKGVHEKL---EHSVQEAIQLNKKLTSVNKRQETEISNLKEELKK-----------------VTTDLIRSKVTSQHRVG 190
Cdd:pfam01576  155 --KLLEERIsefTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKeekgrqelekakrklegESTDLQEQIAELQAQIA 232
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  191 EENINLAAKEKQFQELQQKIRMETAISKRVQEENANIKEEKLEILSSLQCVQKQLQQITQTNVRMESELNALREEYQ-TL 269
Cdd:pfam01576  233 ELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEdTL 312
                          250
                   ....*....|....*.
gi 2024503300  270 ERDNELQREKAKENEE 285
Cdd:pfam01576  313 DTTAAQQELRSKREQE 328
235kDa-fam TIGR01612
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ...
54-331 4.04e-03

reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.


Pssm-ID: 130673 [Multi-domain]  Cd Length: 2757  Bit Score: 41.58  E-value: 4.04e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   54 AMEEEKGKYQLAVEIKEKEIDGLKET-LKELQIS---KHTLQKKLNEMDQKL-QMHLTGREEHNkklNEVERCYATIACQ 128
Cdd:TIGR01612  932 SIEKFHNKQNILKEILNKNIDTIKESnLIEKSYKdkfDNTLIDKINELDKAFkDASLNDYEAKN---NELIKYFNDLKAN 1008
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  129 FGIVKG--------VHEKLEHSV-QEAIQLNKKLTSVNKRQETEISNLKEELKKVTTDLIRSKVTSQHRVGEENINlaak 199
Cdd:TIGR01612 1009 LGKNKEnmlyhqfdEKEKATNDIeQKIEDANKNIPNIEIAIHTSIYNIIDEIEKEIGKNIELLNKEILEEAEINIT---- 1084
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  200 ekQFQELQQKIRMETaISKRVQEENANIKEE----KLEILSSLQCVQKQLQQITQTNVRMESELNALREEYQTLER--DN 273
Cdd:TIGR01612 1085 --NFNEIKEKLKHYN-FDDFGKEENIKYADEinkiKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQINDLEDvaDK 1161
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 2024503300  274 ELQREKAKENEEKFLNLQNEHEKalriwkkdEENLRREMDTIKNELNSLKKTQGHLDD 331
Cdd:TIGR01612 1162 AISNDDPEEIEKKIENIVTKIDK--------KKNIYDEIKKLLNEIAEIEKDKTSLEE 1211
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
36-324 4.74e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 40.82  E-value: 4.74e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   36 QNKEAMAAFKKQLQARMFAMEEEKGKyqlaveiKEKEIDGLKETLKELQISKHTLQKKLNEMdqklqmhltgrEEHNKKL 115
Cdd:PRK03918   179 ERLEKFIKRTENIEELIKEKEKELEE-------VLREINEISSELPELREELEKLEKEVKEL-----------EELKEEI 240
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  116 NEVERcyatiacQFGIVKGVHEKLEHSVQEAIQLNKKLTSVNKRQETEISNLKEELKKVTTDLIRSKVTSQHRVGEENIn 195
Cdd:PRK03918   241 EELEK-------ELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREI- 312
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  196 laakEKQFQELQQKIRmetAISKRVQEenANIKEEKLEILSslqcvqKQLQQITQTNVRMESELNALREEYQTLERDNEL 275
Cdd:PRK03918   313 ----EKRLSRLEEEIN---GIEERIKE--LEEKEERLEELK------KKLKELEKRLEELEERHELYEEAKAKKEELERL 377
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*....
gi 2024503300  276 QREKAKENEEKFLNLQNEHEKALRIWKKDEENLRREMDTIKNELNSLKK 324
Cdd:PRK03918   378 KKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKK 426
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
215-378 5.67e-03

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 40.58  E-value: 5.67e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  215 AISKR-------VQEENANIKEEKLEI---LSSLQCVQKQLQQITQtnvrmesELNALREEYQTLERDNELQREKAKENE 284
Cdd:PRK00409   492 EIAKRlglpeniIEEAKKLIGEDKEKLnelIASLEELERELEQKAE-------EAEALLKEAEKLKEELEEKKEKLQEEE 564
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  285 EKFL-NLQNEHEKALRIWKKDEENLRREMDTIKNELNS------LKKTQGHLDDCHPP---QGNQHSEQVENLQIHSTVH 354
Cdd:PRK00409   565 DKLLeEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYAsvkaheLIEARKRLNKANEKkekKKKKQKEKQEELKVGDEVK 644
                          170       180
                   ....*....|....*....|....
gi 2024503300  355 pvIRNSGQeqsKGsEIQAIQKKND 378
Cdd:PRK00409   645 --YLSLGQ---KG-EVLSIPDDKE 662
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
148-319 5.85e-03

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 39.52  E-value: 5.85e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  148 QLNKKLTSVNKRQET---EISNLKEELKKVTTDLIRSKVtsqhRVGEENINLAAKEKQFQELQQKIrmetaisKRVQEEN 224
Cdd:COG1579     14 ELDSELDRLEHRLKElpaELAELEDELAALEARLEAAKT----ELEDLEKEIKRLELEIEEVEARI-------KKYEEQL 82
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  225 ANIKEEKleilsSLQCVQKQLQQITQTNVRMESELNALREEYQTLERDNELQREKAKENEEKFLNLQNEHEKALRIWKKD 304
Cdd:COG1579     83 GNVRNNK-----EYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAE 157
                          170
                   ....*....|....*
gi 2024503300  305 EENLRREMDTIKNEL 319
Cdd:COG1579    158 LEELEAEREELAAKI 172
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
137-295 7.20e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 40.14  E-value: 7.20e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  137 EKLEHSVQEAIQLNKKLTSVNKRQET---EISNLKEELKKVttDLIRSKVTSQHRVGEENINLAAKEKQFQELQQKIR-- 211
Cdd:COG4717     81 KEAEEKEEEYAELQEELEELEEELEEleaELEELREELEKL--EKLLQLLPLYQELEALEAELAELPERLEELEERLEel 158
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  212 --METAISKRVQE-ENANIKEEKLEILSSLQcVQKQLQQITQTNVRMESELNALREEYQTLERDNELQREKAKENEEKFL 288
Cdd:COG4717    159 reLEEELEELEAElAELQEELEELLEQLSLA-TEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELE 237

                   ....*..
gi 2024503300  289 NLQNEHE 295
Cdd:COG4717    238 AAALEER 244
BLOC1_2 pfam10046
Biogenesis of lysosome-related organelles complex-1 subunit 2; Members of this family of ...
255-330 7.55e-03

Biogenesis of lysosome-related organelles complex-1 subunit 2; Members of this family of proteins play a role in cellular proliferation, as well as in the biogenesis of specialized organelles of the endosomal-lysosomal system.


Pssm-ID: 462951 [Multi-domain]  Cd Length: 96  Bit Score: 36.80  E-value: 7.55e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2024503300  255 MESELNALREEYQTLERDNELQREKAKENEEKFLNLQNEHEKalrIWKKDEE--NLRREMDTIKNELNSLKKTQGHLD 330
Cdd:pfam10046   11 LEAELEATVEDYKLLEKMNEATSLKYKDMKDVAASLEKELEE---LNQKYEElqPYLQQIDQIEEQVTKLEETVYELD 85
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
33-378 7.89e-03

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 39.89  E-value: 7.89e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   33 LQQQNKEAMAAFKKQLQARMFAMEE-EKGKYQLAVEIKEK--EIDGLKETLKELQISKHTLQKKLNEMDQKLQMHLTGRE 109
Cdd:COG4372     18 LRPKTGILIAALSEQLRKALFELDKlQEELEQLREELEQAreELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELA 97
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  110 EHNKKLNEVERCYATIACQFgivkgvhEKLEHSVQEAIQLNKKLTSVNKRQETEISNLKEELKKVTTDLIR-SKVTSQHR 188
Cdd:COG4372     98 QAQEELESLQEEAEELQEEL-------EELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESlQEELAALE 170
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  189 VGEENINLAAKEKQFQELQQKIRmetaisKRVQEENANIKEEKLEILSSLQCVQKQLQQITQTNVRMESELNALREEYQT 268
Cdd:COG4372    171 QELQALSEAEAEQALDELLKEAN------RNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALEL 244
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  269 LERDNELQREKAKENEEKFLNLQNEHEKALRIWKKDEENLRREMDTIKNELNSLKKTQGHLDDCHPPQGNQHSEQVENLQ 348
Cdd:COG4372    245 EEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLEL 324
                          330       340       350
                   ....*....|....*....|....*....|
gi 2024503300  349 IHSTVHPVIRNSGQEQSKGSEIQAIQKKND 378
Cdd:COG4372    325 AKKLELALAILLAELADLLQLLLVGLLDND 354
MAD pfam05557
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ...
63-379 7.93e-03

Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.


Pssm-ID: 461677 [Multi-domain]  Cd Length: 660  Bit Score: 40.11  E-value: 7.93e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300   63 QLAVEIKEKEIDGlKETLKELQISKHTLQKKLN---EMDQKLQMHLTGRE----EHNKKLNE-VERCYATIACQFGIVKG 134
Cdd:pfam05557   13 QLQNEKKQMELEH-KRARIELEKKASALKRQLDresDRNQELQKRIRLLEkreaEAEEALREqAELNRLKKKYLEALNKK 91
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  135 VHEKlEHSVQEAIQLNKKLTSVNKRQETEISNLKEELKKVTTDLIRSkvtsQHRVGEENINLAAKEKQFQELQQKIRMET 214
Cdd:pfam05557   92 LNEK-ESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEEL----QERLDLLKAKASEAEQLRQNLEKQQSSLA 166
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  215 AISKRVQEenaniKEEKLEILSSLQCVQKQLQQITQTNVRMESELNALREE---YQTLERDNELQREKAKENEEKFLNLQ 291
Cdd:pfam05557  167 EAEQRIKE-----LEFEIQSQEQDSEIVKNSKSELARIPELEKELERLREHnkhLNENIENKLLLKEEVEDLKRKLEREE 241
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024503300  292 NEHEKALriwkkdeeNLRREMDTIKNELNSLKKT-QGHLDDCHPPQgnQHSEQVENLQIHSTVHPVIRNSGQEQSKGSEI 370
Cdd:pfam05557  242 KYREEAA--------TLELEKEKLEQELQSWVKLaQDTGLNLRSPE--DLSRRIEQLQQREIVLKEENSSLTSSARQLEK 311

                   ....*....
gi 2024503300  371 QAIQKKNDC 379
Cdd:pfam05557  312 ARRELEQEL 320
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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