|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
286-953 |
3.34e-22 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 103.21 E-value: 3.34e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 286 AVLKRQLEEKEKQLTAEQEDAAAARNKLRELSKELAAEKAKAAAseskLKEQLVTREREITAVQARmqasYQDHVNETQQ 365
Cdd:TIGR02168 228 ALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEE----LRLEVSELEEEIEELQKE----LYALANEISR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 366 LQGKIRALQEQLEN------GPNTQLARLQQENSILRDALNQATSQTESKQN--AELAKLRQECNKLMKELSEKSEVLQQ 437
Cdd:TIGR02168 300 LEQQKQILRERLANlerqleELEAQLEELESKLDELAEELAELEEKLEELKEelESLEAELEELEAELEELESRLEELEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 438 EEQQKKSweiKAAASEKQIEQLQTSQREMEATLQkRLDEVSDELRKTQTSYRSLVADAEKAKGQQQS------IAELQAK 511
Cdd:TIGR02168 380 QLETLRS---KVAQLELQIASLNNEIERLEARLE-RLEDRRERLQQEIEELLKKLEEAELKELQAELeeleeeLEELQEE 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 512 LLSSETEVKSKLLELDSLKGKLQEASSENTRLLERIKSIEALLEagRMREAEEDRDLQAANEAEMKQLQLRLQE--KTDQ 589
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQE--NLEGFSEGVKALLKNQSGLSGILGVLSEliSVDE 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 590 LLSLEREAAeLREAMEQQKTKNNdlrEKNWKAVEALTTVEKA----CEEKLLAATKAKEELAHQLdvlqtRTKETLLSAL 665
Cdd:TIGR02168 534 GYEAAIEAA-LGGRLQAVVVENL---NAAKKAIAFLKQNELGrvtfLPLDSIKGTEIQGNDREIL-----KNIEGFLGVA 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 666 PEVTVSQQDYeawlqefkEKAVNVLKQHTVMTEPVDSAL---KLKEAEEAQSTLQAECEQYRAILA--ETEGMLRDLQKS 740
Cdd:TIGR02168 605 KDLVKFDPKL--------RKALSYLLGGVLVVDDLDNALelaKKLRPGYRIVTLDGDLVRPGGVITggSAKTNSSILERR 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 741 VEEEEQvwKAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQLENHLQTASSERQNYTKEVEGLRQ 820
Cdd:TIGR02168 677 REIEEL--EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSK 754
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 821 LLSESQEQLEAAKTETQKQSKELALLKMQLEQNEALMEKEQELRQKLTRELEEAQSSACSLQAELEKLRLAENAAASDME 900
Cdd:TIGR02168 755 ELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA 834
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|...
gi 2024390164 901 EAQHLKERLEKEKKLTRDLGQAATKLQELLKVTQDQLAKERETVKKLKEQLHE 953
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEE 887
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
288-910 |
2.88e-20 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 96.93 E-value: 2.88e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 288 LKRQLEEKEKQ---------LTAEQE--DAAAARNKLRELSKELaaekAKAAASESKLKEQLVTREREITAVQARMQASY 356
Cdd:COG1196 198 LERQLEPLERQaekaeryreLKEELKelEAELLLLKLRELEAEL----EELEAELEELEAELEELEAELAELEAELEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 357 QDHVNETQQLQGKIRALQEQLEngpntQLARLQQENSILRDALNQATsqteskqnAELAKLRQECNKLMKELSEKSEVLQ 436
Cdd:COG1196 274 LELEELELELEEAQAEEYELLA-----ELARLEQDIARLEERRRELE--------ERLEELEEELAELEEELEELEEELE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 437 QEEQQKKSWEIKAAASEKQIEQLQTSQREMEATLQKRLDEVSDELRKTQTSYRSLVADAEKAKGQQQSIAELQAKLLSSE 516
Cdd:COG1196 341 ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 517 TEVKSKLLELDSLKGKLQEASSENTRLLERIKSIEALLEAGRMREAEEDRDLQAANEAEMKQLQLRLQEKTDQLLSLERE 596
Cdd:COG1196 421 EELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 597 AAELREAMEQQKTKNNDLREKNWKAVEALTTVEKACEEKLLAATKA--------KEELAHQLDVLQTRTKETLLSALPEV 668
Cdd:COG1196 501 ADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAalqnivveDDEVAAAAIEYLKAAKAGRATFLPLD 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 669 TVSQQdyeawlqefkeKAVNVLKQHTVMTEPVDSALKLKEAEEAQSTLQAECEQYRAILAETEGMLRDLQKSVEEEEQVW 748
Cdd:COG1196 581 KIRAR-----------AALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREV 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 749 KAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQstdqlkeyiSLLEAQLENHLQTASSERQNYTKEVEGLRQLLSESQEQ 828
Cdd:COG1196 650 TLEGEGGSAGGSLTGGSRRELLAALLEAEAELE---------ELAERLAEEELELEEALLAEEEEERELAEAEEERLEEE 720
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 829 LEAAKTETQKQSKELALLKMQLEQNEALMEKEQELRQKLTrELEEAQSSACSLQAELEKLRlAENAAAsdMEEAQHLKER 908
Cdd:COG1196 721 LEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPP-DLEELERELERLEREIEALG-PVNLLA--IEEYEELEER 796
|
..
gi 2024390164 909 LE 910
Cdd:COG1196 797 YD 798
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
288-951 |
9.96e-20 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 95.51 E-value: 9.96e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 288 LKRQLEEKEKQLTAEQ-EDAAAARNKLRELSKELAAEKAKAAASESKLKEQLVTREREITAVQARM---QASYQDHVNET 363
Cdd:TIGR02168 218 LKAELRELELALLVLRlEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIeelQKELYALANEI 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 364 QQLQGKIRALQEQLEN------GPNTQLARLQQENSILRDALNQATSQTESKQN--AELAKLRQECNKLMKELSEKSEVL 435
Cdd:TIGR02168 298 SRLEQQKQILRERLANlerqleELEAQLEELESKLDELAEELAELEEKLEELKEelESLEAELEELEAELEELESRLEEL 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 436 QQEEQQKKSweiKAAASEKQIEQLQTSQREMEATLQkRLDEVSDELRKTQTSYRSLVADAEKAKGQQQS------IAELQ 509
Cdd:TIGR02168 378 EEQLETLRS---KVAQLELQIASLNNEIERLEARLE-RLEDRRERLQQEIEELLKKLEEAELKELQAELeeleeeLEELQ 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 510 AKLLSSETEVKSKLLELDSLKGKLQEASSENTRLLERIKSIEALLEagRMREAEEDRDLQAANEAEMKQLQLRLQE--KT 587
Cdd:TIGR02168 454 EELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQE--NLEGFSEGVKALLKNQSGLSGILGVLSEliSV 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 588 DQLLSLEREAAeLREAMEQQKTKNNdlrEKNWKAVEALTTVEKA----CEEKLLAATKAKEELAHQLdvlqtRTKETLLS 663
Cdd:TIGR02168 532 DEGYEAAIEAA-LGGRLQAVVVENL---NAAKKAIAFLKQNELGrvtfLPLDSIKGTEIQGNDREIL-----KNIEGFLG 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 664 ALPEVTVSQQDYEawlqefkeKAVNVLKQHTVMTEPVDSAL--------------------------------------- 704
Cdd:TIGR02168 603 VAKDLVKFDPKLR--------KALSYLLGGVLVVDDLDNALelakklrpgyrivtldgdlvrpggvitggsaktnssile 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 705 ---KLKEAEEAQSTLQAECEQYRAILAETEGMLRDLQKSVEEEEQVW----------KAKLTVSEEELQKSQLQLKSLED 771
Cdd:TIGR02168 675 rrrEIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELeelsrqisalRKDLARLEAEVEQLEERIAQLSK 754
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 772 MIEKLKAELQSTDQLKEYISLLEAQLENHLQTASSERQNYTKEVEGLRQLLSESQEQLEAAKTETQKQS-------KELA 844
Cdd:TIGR02168 755 ELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRerlesleRRIA 834
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 845 LLKMQLEQNEALMEKEQELRQKLTRELEEAQSSACSLQAELEKLrlaENAAASDMEEAQHLKERLEKEKKLTRDLGQAAT 924
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL---LNERASLEEALALLRSELEELSEELRELESKRS 911
|
730 740
....*....|....*....|....*..
gi 2024390164 925 KLQELLKVTQDQLAKERETVKKLKEQL 951
Cdd:TIGR02168 912 ELRRELEELREKLAQLELRLEGLEVRI 938
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
384-947 |
7.58e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 85.76 E-value: 7.58e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 384 QLARLQQENSILRDALNQATSQTESKQNAELAKLRQecnkLMKELSEKSEVLQQEEQQKKSWEIKAAASEKQIEQLQTSQ 463
Cdd:COG1196 201 QLEPLERQAEKAERYRELKEELKELEAELLLLKLRE----LEAELEELEAELEELEAELEELEAELAELEAELEELRLEL 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 464 REMEATLQKRLDEVSDELRKTQTSYRSLVADAEKAKGQQQSIAELQAKLLSSETEVKSKLLELDSLKGKLQEASSENTRL 543
Cdd:COG1196 277 EELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 544 LERIKSIEALLEAGRMREAEEDRDLQAANEAEMKQLQ--LRLQEKTDQLLSLEREAAELREAMEQQKTKNNDLREKNWKA 621
Cdd:COG1196 357 EAELAEAEEALLEAEAELAEAEEELEELAEELLEALRaaAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEE 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 622 VEALTTVEKACEEKLLAATKAKEELAHQLDVLQTRTKET-----------------LLSALPEVTVSQQDYEAWLQEFKE 684
Cdd:COG1196 437 EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLeaalaelleelaeaaarLLLLLEAEADYEGFLEGVKAALLL 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 685 KAVNVLKQHTVMTEPVDSALKLKEAEEAQSTLQAECEQYRAILAETEGMLRDLQKSVEEEEQVWKAKLTVSEEELQKSQL 764
Cdd:COG1196 517 AGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGA 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 765 QLKSLEDMIEKLKAELQSTDQLKEYISLLEAQLENHLQTASSERQNYTKEVEGLRQLLSESQEQLEAAKTETQKQSKELA 844
Cdd:COG1196 597 IGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLE 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 845 LLKMQLEQNEALMEKEQELRQKLTRELEEAQSSACSLQAELEKLRLAENAAASDMEEAQHLKERLEKEKKLTRDLGQAAT 924
Cdd:COG1196 677 AEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEEL 756
|
570 580
....*....|....*....|...
gi 2024390164 925 KLQELLKVTQDQLAKERETVKKL 947
Cdd:COG1196 757 PEPPDLEELERELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
256-928 |
5.76e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 83.18 E-value: 5.76e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 256 EAQQLIEILTERAGIVQDTWHTATQKgdpVAVLKRQLEEKEKQLTAEQEDAAAARNKLRELSKELAAEKAKAAASESKLK 335
Cdd:TIGR02168 292 ALANEISRLEQQKQILRERLANLERQ---LEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELE 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 336 EqLVTREREITAVQARMQASYQDHVNETQQLQGKIRALQEQLEnGPNTQLARLQQENSILRDALNQATSQTESKQNAELA 415
Cdd:TIGR02168 369 E-LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLE-RLEDRRERLQQEIEELLKKLEEAELKELQAELEELE 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 416 KLRQECNKLMKELSEKSEVLQQEEQQKKSWEIKAAASEKQIEQLQTSQREMEATLQKRLDEVSDEL--RKTQTSYRSLVA 493
Cdd:TIGR02168 447 EELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLknQSGLSGILGVLS 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 494 DA-EKAKGQQQSIAE-----LQAKLLSSETEV-------------KSKLLELDSLKGKLQEASSENTR------------ 542
Cdd:TIGR02168 527 ELiSVDEGYEAAIEAalggrLQAVVVENLNAAkkaiaflkqnelgRVTFLPLDSIKGTEIQGNDREILkniegflgvakd 606
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 543 --------------LLERIKSIEALLEAGRMR-------------------------EAEEDRDLQAANEAEMKQLQLRL 583
Cdd:TIGR02168 607 lvkfdpklrkalsyLLGGVLVVDDLDNALELAkklrpgyrivtldgdlvrpggvitgGSAKTNSSILERRREIEELEEKI 686
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 584 QEKTDQLLSLEREAAELREAMEQQKTKNNDLReknwKAVEALTTVEKACEEKLLAATKAKEELAHQLDVLQTRTKE---- 659
Cdd:TIGR02168 687 EELEEKIAELEKALAELRKELEELEEELEQLR----KELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEleae 762
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 660 --TLLSALPEVTVSQQDYEAWLQEFKEKAVNVLKQHTVMTEPVDSALK-LKEAEEAQSTLQAECEQYRAILAETEGMLRD 736
Cdd:TIGR02168 763 ieELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAeLTLLNEEAANLRERLESLERRIAATERRLED 842
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 737 LQKSVEEEEqvwkakltvseEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQLENHLQTASSERQNYTKEVE 816
Cdd:TIGR02168 843 LEEQIEELS-----------EDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRS 911
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 817 GLRQLLSESQEQLEAAKTETQK-QSKELALLKMQLEQNEALMEKEQELRQKLTRELEEAQSSACSLQAELEKLRlAENAA 895
Cdd:TIGR02168 912 ELRRELEELREKLAQLELRLEGlEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELG-PVNLA 990
|
730 740 750
....*....|....*....|....*....|...
gi 2024390164 896 AsdMEEAQHLKERLEKEKKLTRDLGQAATKLQE 928
Cdd:TIGR02168 991 A--IEEYEELKERYDFLTAQKEDLTEAKETLEE 1021
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
286-852 |
1.30e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.91 E-value: 1.30e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 286 AVLKRQLEEKEKQLTAEQEDAAAARNKLRELSKElaaekakaaasesklkeqlvtrEREITAVQARMQASYQDHVNETQQ 365
Cdd:COG1196 256 EELEAELAELEAELEELRLELEELELELEEAQAE----------------------EYELLAELARLEQDIARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 366 LQGKIRALQEQLENgpntQLARLQQENSILRDALNQATSQTESKQNAELAKLRQEcnklmKELSEKSEVLQQEEQQKKSW 445
Cdd:COG1196 314 LEERLEELEEELAE----LEEELEELEEELEELEEELEEAEEELEEAEAELAEAE-----EALLEAEAELAEAEEELEEL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 446 EIKAAASEKQIEQLQTSQREMEATLQKRLDEVSDELRKTQTSYRSLVADAEKAKGQQQSIAELQAKLLSSETEVKSKLLE 525
Cdd:COG1196 385 AEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLEL 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 526 LDSLKGKLQEASSENTRLLERIKSIEALLEAGRMREAEEDRDLQAANEAEMKQLQLRLQEKTDQLLSLEREAAELREAME 605
Cdd:COG1196 465 LAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAAL 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 606 QQKTKNNDLREknwkAVEALTTVEKACEEKLLAATKAKEELAHQLDVLQTRTKETLLSALPEVTVSQQDYEAwlqEFKEK 685
Cdd:COG1196 545 AAALQNIVVED----DEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREAD---ARYYV 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 686 AVNVLKQHTVMTEPVDSALKLKEAEEAQstlQAECEQYRAILAETEGMLRDLQKSVEEEEQVWKAKLtvsEEELQKSQLQ 765
Cdd:COG1196 618 LGDTLLGRTLVAARLEAALRRAVTLAGR---LREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAEL---EELAERLAEE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 766 LKSLEDMIEKLKAELQSTDQLKEYISLLEAQLENHLQTASSERQNYTKEVEGLRQLLSESQEQLEAAKTETQKQSKELAL 845
Cdd:COG1196 692 ELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELER 771
|
....*..
gi 2024390164 846 LKMQLEQ 852
Cdd:COG1196 772 LEREIEA 778
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
407-957 |
1.56e-15 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 82.11 E-value: 1.56e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 407 ESKQNAELAKLRQECNKLMKELSEKSEVLQQE-EQQKKSWEIKAAASEKQIEQLQTSQREMEAtlqkrldevsDELRKTQ 485
Cdd:PTZ00121 1306 EAKKKAEEAKKADEAKKKAEEAKKKADAAKKKaEEAKKAAEAAKAEAEAAADEAEAAEEKAEA----------AEKKKEE 1375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 486 TSYRslvADAEKAKGQQQSIAElqakllssetEVKSKLLELDSLKGKLQEASSENTRLLERIKSIEALLEAGRMREAEED 565
Cdd:PTZ00121 1376 AKKK---ADAAKKKAEEKKKAD----------EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEE 1442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 566 RdlQAANEAEMKQLQLRLQEKTDQLLSLEREAAELREAMEQQKtKNNDLREKNWKAVEALTTVEKACEEKLLAATKAKEE 645
Cdd:PTZ00121 1443 A--KKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAK-KADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAE 1519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 646 LAHQLDVLQTRTKETLLSALPEVTVSQQDYEAWLQEFKEKAVNVLKQHTVMTEPVDSALKLKEAEEAQSTLQAECEQYRA 725
Cdd:PTZ00121 1520 EAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMK 1599
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 726 ILAETEGMLRDLQKSVEEEEqvwkakltVSEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEyislleaqlenhlqtas 805
Cdd:PTZ00121 1600 LYEEEKKMKAEEAKKAEEAK--------IKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKK----------------- 1654
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 806 SERQNYTKEVEGLRQLLSESQEQLEAAKTETQKQSKELALLKMQLEQnealmEKEQELRQKLTRELEEAqssacslqael 885
Cdd:PTZ00121 1655 AEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEA-----KKAEELKKKEAEEKKKA----------- 1718
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024390164 886 EKLRLAENAAASDMEEAQHLKERLEKEKKLTRDLGQAATKLQELLKVTQ---DQLAKERETVkkLKEQLHEKGEE 957
Cdd:PTZ00121 1719 EELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEkkaEEIRKEKEAV--IEEELDEEDEK 1791
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
412-955 |
8.44e-15 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 78.95 E-value: 8.44e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 412 AELAKLRQECNKLMKELSEKSEVLQQEEQQKKSWEIKAAASEKQIEQLQTSQREMEatlqKRLDEVsDELRKTQTSYRSL 491
Cdd:PRK03918 224 EKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELE----EKVKEL-KELKEKAEEYIKL 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 492 VADAEKAKGQQQSIAELQAKLLSSETEVKSKLLELDSLKGKLQEASSENTRLLERIKSIEalleaGRMREAEEDRDLQAA 571
Cdd:PRK03918 299 SEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELE-----ERHELYEEAKAKKEE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 572 NEAEMKQLQLRLQEKTDQLL-SLEREAAELREAMEQQKTKNNDLREKNWKAVEALTTVEKACEEKLLAATKAKEElaHQL 650
Cdd:PRK03918 374 LERLKKRLTGLTPEKLEKELeELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEE--HRK 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 651 DVLQTRTKEtlLSALPEVTVSQQDYEAWLQEFKEKAVNVLKQHTVMTEPVDSALKLKEAEEAQST-----LQAECEQYRA 725
Cdd:PRK03918 452 ELLEEYTAE--LKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKynleeLEKKAEEYEK 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 726 I---LAETEGMLRDLQKSVEEEEQVwKAKLTVSEEELQKSQLQLKSLEDMIEKLKAElqSTDQLKEYISLLEAQLENHLQ 802
Cdd:PRK03918 530 LkekLIKLKGEIKSLKKELEKLEEL-KKKLAELEKKLDELEEELAELLKELEELGFE--SVEELEERLKELEPFYNEYLE 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 803 TASSErqnytKEVEGLRQLLSESQEQLEAAKTETQKQSKELALLKMQLEqnEALMEKEQELRQKLTRELEEAQSSACSLQ 882
Cdd:PRK03918 607 LKDAE-----KELEREEKELKKLEEELDKAFEELAETEKRLEELRKELE--ELEKKYSEEEYEELREEYLELSRELAGLR 679
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024390164 883 AELEKLRLAENAAASDMEEAQHLKERLEKEKKLTRDLGQAATKLQELlkvtqdqlakeRETVKKLKEQLHEKG 955
Cdd:PRK03918 680 AELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEEL-----------REKVKKYKALLKERA 741
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
407-961 |
1.63e-13 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 75.18 E-value: 1.63e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 407 ESKQNAELAKLRQECNKLMKELSEKSEVLQQEEQQKKSWEIKAAASEKQIEQLQTSQREMEATLQKRLDEVSDELRKTQT 486
Cdd:PTZ00121 1221 EDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEE 1300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 487 SYRslvADAEKAKGQQQSIAElQAKLLSSETEVKSkllelDSLKGKLQEASSEntrllERIKSIEALLEAGRMREAEEDR 566
Cdd:PTZ00121 1301 KKK---ADEAKKKAEEAKKAD-EAKKKAEEAKKKA-----DAAKKKAEEAKKA-----AEAAKAEAEAAADEAEAAEEKA 1366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 567 DLQAANEAEMKQLQLRLQEKTDQLlsleREAAELREAMEQQKTKNNDLREKNWKAVEALTTVEKACEEKLLAATKAKEEL 646
Cdd:PTZ00121 1367 EAAEKKKEEAKKKADAAKKKAEEK----KKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEE 1442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 647 AHQLDVLQTRTKEtllSALPEVTVSQQDYEAWLQEFKEKAVNVLKQHTVMTEPVDSAlklKEAEEAQSTLQAECEQYRAI 726
Cdd:PTZ00121 1443 AKKADEAKKKAEE---AKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAK---KKADEAKKAAEAKKKADEAK 1516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 727 LAETEGMLRDLQKSVEEE--EQVWKAKLTVSEEELQKSQlQLKSLEdmiEKLKAELQSTDQLKEYISLLEAQLENHLQTA 804
Cdd:PTZ00121 1517 KAEEAKKADEAKKAEEAKkaDEAKKAEEKKKADELKKAE-ELKKAE---EKKKAEEAKKAEEDKNMALRKAEEAKKAEEA 1592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 805 SSERQNYTKEVEGLRQLLSESQEQLEAAKTETQKQSKELallKMQLEQNEALMEKEQELRQKLTRELEEAQSSACSLQAE 884
Cdd:PTZ00121 1593 RIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEE---KKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKK 1669
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024390164 885 LEKLRLAENAAASDMEEAQHLKERLEKEKKLTRDLGQAATKLQELLKvTQDQLAKERETVKKLKEQLHEKGEEDSSK 961
Cdd:PTZ00121 1670 AEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKK-KAEELKKAEEENKIKAEEAKKEAEEDKKK 1745
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
389-962 |
4.35e-13 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 74.02 E-value: 4.35e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 389 QQENSILRDALNQATSQTESKQNAELAKLRQECNKLMKELSEKSEVLQQEEQQK----KSWEIKAAASE-KQIEQLQTSQ 463
Cdd:PTZ00121 1094 EEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKaedaKRVEIARKAEDaRKAEEARKAE 1173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 464 REMEATLQKRLDEV--SDELRKTQTSYRSLVA----DAEKAKGQQQSIAELQAKLLSSETEVKSKLLE--------LDSL 529
Cdd:PTZ00121 1174 DAKKAEAARKAEEVrkAEELRKAEDARKAEAArkaeEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEakkaeeerNNEE 1253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 530 KGKLQEASSENTRLLERIKSIEALLEAGRMREAEEDRDLQAANEAEMKQLQLRLQEKTDQllslEREAAELREAMEQQKT 609
Cdd:PTZ00121 1254 IRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEE----AKKADEAKKKAEEAKK 1329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 610 KNNDLR---EKNWKAVEALTTVEKACEEKLLAATKAKEelAHQLDVLQTRTKETLLSALPEVTVSQQDYEAWLQEFKEKA 686
Cdd:PTZ00121 1330 KADAAKkkaEEAKKAAEAAKAEAEAAADEAEAAEEKAE--AAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKA 1407
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 687 VNVLKQHTVMTEPVDSALKLKEAEEAQSTLQAECEQYRA----ILAETEGMLRDLQKSVEEEEQVWKAKLTVSE----EE 758
Cdd:PTZ00121 1408 DELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKAdeakKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEakkaDE 1487
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 759 LQKSQLQLKSLEDMIEKLKAELQSTDQLK---------EYISLLEAQLENHLQTASSERQ-NYTKEVEGLRQllSESQEQ 828
Cdd:PTZ00121 1488 AKKKAEEAKKKADEAKKAAEAKKKADEAKkaeeakkadEAKKAEEAKKADEAKKAEEKKKaDELKKAEELKK--AEEKKK 1565
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 829 LEAAKTETQKQSKEL-------ALLKMQLEQNEALMEKEQELRQKLTRELEEAQSSACSLQAELEKLRLAENAAASDMEE 901
Cdd:PTZ00121 1566 AEEAKKAEEDKNMALrkaeeakKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEE 1645
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2024390164 902 AQHlKERLEKEKKLTRDLGQAATKLQELLKVTQDQLAKERETVKKLKEQLHEKGEEDSSKE 962
Cdd:PTZ00121 1646 KKK-AEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAE 1705
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
703-963 |
6.43e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.05 E-value: 6.43e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 703 ALKLKEAEEAQSTLQAECEQYRAILAETEGMLRDLQksveEEEQVWKAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQS 782
Cdd:COG1196 252 EAELEELEAELAELEAELEELRLELEELELELEEAQ----AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 783 TDQLKEYISLLEAQLENHLQTASSERQNYTKEVEGLRQLLSESQEQLEAAKTETQKQSKELALLKMQLEQNEALMEKEQE 862
Cdd:COG1196 328 LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEE 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 863 LRQKLTRELEEAQSSACSLQAELEKLRLAENAAASDMEEAQHLKERLEKEKKLTRDLGQAATKLQELLKVTQDQLAKERE 942
Cdd:COG1196 408 AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA 487
|
250 260
....*....|....*....|.
gi 2024390164 943 TVKKLKEQLHEKGEEDSSKEG 963
Cdd:COG1196 488 EAAARLLLLLEAEADYEGFLE 508
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
356-946 |
9.10e-13 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 72.64 E-value: 9.10e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 356 YQDHVNETQQLQGKIRALQEQLENgpntqLARLQQEnsiLRDALNQATSqteskqnaeLAKLRQECNKLmKELSEKSEVL 435
Cdd:COG4913 213 VREYMLEEPDTFEAADALVEHFDD-----LERAHEA---LEDAREQIEL---------LEPIRELAERY-AAARERLAEL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 436 QQEEQQKKSW--EIKAAASEKQIEQLQTSQREmeatLQKRLDEVSDELRKTQTSYRSLVADAEKAKGQQ-QSIAELQAKL 512
Cdd:COG4913 275 EYLRAALRLWfaQRRLELLEAELEELRAELAR----LEAELERLEARLDALREELDELEAQIRGNGGDRlEQLEREIERL 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 513 LSSETEVKSKLLELDSLKGKLQEASSENTR-LLERIKSIEALLEAGRmREAEEDRDLQAANEAEMKQLQLRLQEKTDQLL 591
Cdd:COG4913 351 ERELEERERRRARLEALLAALGLPLPASAEeFAALRAEAAALLEALE-EELEALEEALAEAEAALRDLRRELRELEAEIA 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 592 SLER-------EAAELREAMEQQ-KTKNNDLR-----------EKNWK-AVEAL-----TT--VEKACEEKLLAA---TK 641
Cdd:COG4913 430 SLERrksnipaRLLALRDALAEAlGLDEAELPfvgelievrpeEERWRgAIERVlggfaLTllVPPEHYAAALRWvnrLH 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 642 AKEELahQLDVLQTRTKETLLSALPE------VTVSQQDYEAWLQEFKEKAVNVLKqhtvmtepVDSALKLKEAEeaqst 715
Cdd:COG4913 510 LRGRL--VYERVRTGLPDPERPRLDPdslagkLDFKPHPFRAWLEAELGRRFDYVC--------VDSPEELRRHP----- 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 716 lqaeceqyRAILAEteGMLRDLQKSVE-----EEEQVW------KAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQSTD 784
Cdd:COG4913 575 --------RAITRA--GQVKGNGTRHEkddrrRIRSRYvlgfdnRAKLAALEAELAELEEELAEAEERLEALEAELDALQ 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 785 QLKEYISLLEAQLENHLQTASSERQnytkeveglrqlLSESQEQLEAAKTEtqkqSKELALLKMQLEQNEALMEKEQELR 864
Cdd:COG4913 645 ERREALQRLAEYSWDEIDVASAERE------------IAELEAELERLDAS----SDDLAALEEQLEELEAELEELEEEL 708
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 865 QKLTRELEEAQSSACSLQAELEKL--RLAENAAASDMEEAQHLKERL------EKEKKLTRDLGQAATKLQELLKVTQDQ 936
Cdd:COG4913 709 DELKGEIGRLEKELEQAEEELDELqdRLEAAEDLARLELRALLEERFaaalgdAVERELRENLEERIDALRARLNRAEEE 788
|
650
....*....|
gi 2024390164 937 LAKERETVKK 946
Cdd:COG4913 789 LERAMRAFNR 798
|
|
| Rib_recp_KP_reg |
pfam05104 |
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ... |
33-168 |
3.40e-12 |
|
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.
Pssm-ID: 461548 [Multi-domain] Cd Length: 140 Bit Score: 64.76 E-value: 3.40e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 33 MKETSYEEALAKQRKELEKTnQHKIEKKKKEKPVEKKGKAKKKEEKPNGKIPEQQVTQEVTDSSKDVVVEPAVVPEPIAV 112
Cdd:pfam05104 1 MKETSYEEALAKQRRELKKT-PTEKEKKKKEKKKEKKKKSKKKEEKPNGKLPESEQADESEEEPREFKTPDEAPSAALEP 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2024390164 113 E-----SPIAAVSVPPQEKEKPALSPKEKRKKEKKVAKVEPAPSPALASPPASVPKGSPVL 168
Cdd:pfam05104 80 EpvptpVPAPVEPEPAPPSESPAPSPKEKKKKEKKSAKVEPAETPEAVQPKPALEKEEPPA 140
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
396-910 |
3.61e-12 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 70.45 E-value: 3.61e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 396 RDALNQATSQTESKQNAE----LAKLRQECNKLMKELSEKSEVLQQEEQQKKSWEIKAAASEKQIEQLQTSQREME---- 467
Cdd:PRK02224 186 RGSLDQLKAQIEEKEEKDlherLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEdlre 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 468 ---------ATLQKRLDEVSDELRKTQTSYRSLVADAEKAKGQQQSIAELQAKLLSSETEVKSKLLE-----------LD 527
Cdd:PRK02224 266 tiaetererEELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEEcrvaaqahneeAE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 528 SLKGKLQEASSENTRLLERIKSIEALLEAGRmREAEEDRDLQAANEAEMKQLQLRLQEKTDQLLSLEREAAELREAMEQQ 607
Cdd:PRK02224 346 SLREDADDLEERAEELREEAAELESELEEAR-EAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDEL 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 608 KTKNNDLREKnwkaveaLTTVEKACEE--KLLAATKAKEelahqldVLQTRTKETLLSALPEVTVSQQDYEAWLQEFKEK 685
Cdd:PRK02224 425 REREAELEAT-------LRTARERVEEaeALLEAGKCPE-------CGQPVEGSPHVETIEEDRERVEELEAELEDLEEE 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 686 AVNVLKQHTVMTEPVDSALKLKEAEEAQSTLQAECEQYRAILAETEGMLRDLQKSVEE---EEQVWKAKLTVSEEELQKS 762
Cdd:PRK02224 491 VEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAEleaEAEEKREAAAEAEEEAEEA 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 763 QLQLKSLEDMIEKLKAELQSTDQLKEYISLLEaqlenhlqtasserqNYTKEVEGLRqllsESQEQLEAAKTETQKQSKE 842
Cdd:PRK02224 571 REEVAELNSKLAELKERIESLERIRTLLAAIA---------------DAEDEIERLR----EKREALAELNDERRERLAE 631
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 843 LALLKMQLEQ--NEALMEKEQELRQKLTRELEEAQSSACSLQAELEKLRLAENAAASDMEEAQHLKERLE 910
Cdd:PRK02224 632 KRERKRELEAefDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERRE 701
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
707-962 |
6.09e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.97 E-value: 6.09e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 707 KEAEEAQS--TLQAECEQYRAILA--------ETEGMLRDLQKSVEEEEQVWKAKLTVSEEELQKSQLQLKSLEDMIEKL 776
Cdd:COG1196 207 RQAEKAERyrELKEELKELEAELLllklreleAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 777 KAELQSTDQLKEYISLLEAQLENHLQTASSERQNYTKEVEGLRQLLSESQEQLEAAKTETQKQSKELALLKMQLEQNEAL 856
Cdd:COG1196 287 QAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 857 MEKEQELRQKLTRELEEAQSSACSLQAELEKLRLAENAAASDMEEAQHLKERLEKEKKLTRDLGQAATKLQELLKVTQDQ 936
Cdd:COG1196 367 LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446
|
250 260
....*....|....*....|....*.
gi 2024390164 937 LAKERETVKKLKEQLHEKGEEDSSKE 962
Cdd:COG1196 447 AAEEEAELEEEEEALLELLAELLEEA 472
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
288-890 |
8.85e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 69.32 E-value: 8.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 288 LKRQLEEKEKQLTAEQEDAAAARNKLRELSKELaAEKAKAAASESKLKEQLVTREREITAVQARMQAsyqdhvnetqqLQ 367
Cdd:PRK03918 191 IEELIKEKEKELEEVLREINEISSELPELREEL-EKLEKEVKELEELKEEIEELEKELESLEGSKRK-----------LE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 368 GKIRALQEQLEngpntqlaRLQQENSILRDALnqatsqtesKQNAELAKLRQECNKLMKELSEKSEVLQQEEQQKKSWEI 447
Cdd:PRK03918 259 EKIRELEERIE--------ELKKEIEELEEKV---------KELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 448 KAAASEKQIEQLQTSQREMEaTLQKRLDEVSDELRKTQTSYRSLvadaEKAKGQQQSIAELQAKLLSSETE-VKSKLLEL 526
Cdd:PRK03918 322 EINGIEERIKELEEKEERLE-ELKKKLKELEKRLEELEERHELY----EEAKAKKEELERLKKRLTGLTPEkLEKELEEL 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 527 DSLKGKLQEASSE--------NTRLLERIKSIEALLEA-------GRMREAEEDRDLQAANEAEMKQLQLRLQEKTDQLL 591
Cdd:PRK03918 397 EKAKEEIEEEISKitarigelKKEIKELKKAIEELKKAkgkcpvcGRELTEEHRKELLEEYTAELKRIEKELKEIEEKER 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 592 SLEREAAE-------------LREAMEQQKTKNNDLREKNWKAVEALTTVEKACEEKLLAATKAKEELAHQLDVLQ--TR 656
Cdd:PRK03918 477 KLRKELRElekvlkkeselikLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEelKK 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 657 TKETLLSALPEVTVSQQDYEAWLQEFKEKAVNVLKQHTVMTEP--------VDSALKLKEAEEAQSTLQAECEQYRAILA 728
Cdd:PRK03918 557 KLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPfyneylelKDAEKELEREEKELKKLEEELDKAFEELA 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 729 ETEGMLRDLQKSVEEEEQVWkakltvSEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQLENHLQtassER 808
Cdd:PRK03918 637 ETEKRLEELRKELEELEKKY------SEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELE----ER 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 809 QNYTKEVEGLRQLLSESQEQLEAAKtetqkqskelallKMQLEQNEALMEKEQELRQKLTRELEEAQSSACSLQAELEKL 888
Cdd:PRK03918 707 EKAKKELEKLEKALERVEELREKVK-------------KYKALLKERALSKVGEIASEIFEELTEGKYSGVRVKAEENKV 773
|
..
gi 2024390164 889 RL 890
Cdd:PRK03918 774 KL 775
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
287-957 |
2.69e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.79 E-value: 2.69e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 287 VLKRQLEEKEKQLTAEQEDAAAARNKLRELSKELAAEKAKAAASESKLKEQLVTREREITAVQARMQASYQDHVNETQQL 366
Cdd:TIGR02169 227 ELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASL 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 367 QGKIRALQEQLENGPNTQLARLQQENSILRDALNQATSQTEskQNAELAKLRQECNKLMKELSEKSEVLQQEEQQKKSWE 446
Cdd:TIGR02169 307 ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEE--ERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETR 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 447 IKAAASEKQIEQLqtsQREMEaTLQKRLDEVSDELRKTQTSYRSLVADAEKAKGQqqsIAELQAKLLSSETEVKSKLLEL 526
Cdd:TIGR02169 385 DELKDYREKLEKL---KREIN-ELKRELDRLQEELQRLSEELADLNAAIAGIEAK---INELEEEKEDKALEIKKQEWKL 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 527 DSLKGKLQEASSENTRLLERIKSIEALLEAGRMREAEEDRDLQAANEAEMKQLQLRLQEKTD---------QLLSLEREA 597
Cdd:TIGR02169 458 EQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASiqgvhgtvaQLGSVGERY 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 598 AELREAMEQQKTKNndlreknwkAVEALTTVEKACEEkLLAATKAKEelAHQLDVLQTRTKETLLSALPEVTVSqqDYEA 677
Cdd:TIGR02169 538 ATAIEVAAGNRLNN---------VVVEDDAVAKEAIE-LLKRRKAGR--ATFLPLNKMRDERRDLSILSEDGVI--GFAV 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 678 WLQEFKEKAVNVLK---QHTVMTEPVDSA---------------------------LKLKEAEEAQSTLQAECEQYRAIL 727
Cdd:TIGR02169 604 DLVEFDPKYEPAFKyvfGDTLVVEDIEAArrlmgkyrmvtlegelfeksgamtggsRAPRGGILFSRSEPAELQRLRERL 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 728 AETEGMLRDLQKSVEEEEQV---WKAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQstdQLKEYISLLEAQLEN----- 799
Cdd:TIGR02169 684 EGLKRELSSLQSELRRIENRldeLSQELSDASRKIGEIEKEIEQLEQEEEKLKERLE---ELEEDLSSLEQEIENvksel 760
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 800 -HLQTASSERQ----NYTKEVEGLRQLLSES-----QEQLEAAKTETQKQSKELALLKMQLEQNEALMEKEQELRQKLTR 869
Cdd:TIGR02169 761 kELEARIEELEedlhKLEEALNDLEARLSHSripeiQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQE 840
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 870 ELEEAQSSACSLQAELEKLRLAENAAASDMEEAQHLKERLEKE-KKLTRDLGQAATKLQElLKVTQDQLAKERETVKKLK 948
Cdd:TIGR02169 841 QRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRlGDLKKERDELEAQLRE-LERKIEELEAQIEKKRKRL 919
|
....*....
gi 2024390164 949 EQLHEKGEE 957
Cdd:TIGR02169 920 SELKAKLEA 928
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
335-954 |
3.05e-11 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 67.84 E-value: 3.05e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 335 KEQLVTREREITA-VQARMQASYQDHVNETQQLQGKIRA---LQEQLENGPNTQLARLQQENSILRDALNQATSQTESKQ 410
Cdd:pfam15921 118 KLQEMQMERDAMAdIRRRESQSQEDLRNQLQNTVHELEAakcLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFE 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 411 NAELAKLRQECNKLMKEL----SEKSEVLQQEEQQKKSWEIKAAASEKQIEQLQT-SQREMEATLQKRLDEVSDELRKTQ 485
Cdd:pfam15921 198 EASGKKIYEHDSMSTMHFrslgSAISKILRELDTEISYLKGRIFPVEDQLEALKSeSQNKIELLLQQHQDRIEQLISEHE 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 486 TSYRSLVADAEKAKGQQQSIAE----LQAKLLSSETEVKSKLLELDSLKGKLQEASSENTRLLE-RIKSIEA--LLEAGR 558
Cdd:pfam15921 278 VEITGLTEKASSARSQANSIQSqleiIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEdKIEELEKqlVLANSE 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 559 MREAEEDRDLQAANEAEMK-QLQLRLQE--KTDQLLSLEREAAE--LREAMEQQKTKNNDLREKNWKAVEA------LTT 627
Cdd:pfam15921 358 LTEARTERDQFSQESGNLDdQLQKLLADlhKREKELSLEKEQNKrlWDRDTGNSITIDHLRRELDDRNMEVqrlealLKA 437
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 628 VEKACE---EKLLAATKAKEELAHQLDVLQTR---TKETLLSALPEVTVSQ----------QDYEAWLQEfKEKAVNVLK 691
Cdd:pfam15921 438 MKSECQgqmERQMAAIQGKNESLEKVSSLTAQlesTKEMLRKVVEELTAKKmtlessertvSDLTASLQE-KERAIEATN 516
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 692 QH-TVMTEPVDSALK----LKEAEEAQSTLQAECEQYRAILAETEGMLRDLQKSVEEEEQ-------------VWKAKLt 753
Cdd:pfam15921 517 AEiTKLRSRVDLKLQelqhLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQlvgqhgrtagamqVEKAQL- 595
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 754 vsEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQLENH-------LQTASSERQNYTKEVEGLRQLLSESQ 826
Cdd:pfam15921 596 --EKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAgserlraVKDIKQERDQLLNEVKTSRNELNSLS 673
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 827 EQLEAAKTETQKQSKELAL----LKMQLEQNEALMEKEQELRQKLTRELEEAQSSACSLQAELEKLRLAENAAASDMEEA 902
Cdd:pfam15921 674 EDYEVLKRNFRNKSEEMETttnkLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFL 753
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|..
gi 2024390164 903 QHLKERLEKEKKLTRDLGQAATKLQELLKVTQDQLAKERETVKKLKEQLHEK 954
Cdd:pfam15921 754 EEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEK 805
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
278-645 |
3.13e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.86 E-value: 3.13e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 278 ATQKGDPVAVLKRQLEEKEKQLTAEQEDAAAARNKLRELSK--ELAAEKAKAAASESKLKEQLVTREREITAVQARMQAS 355
Cdd:PTZ00121 1352 AEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKadEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKK 1431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 356 YQDHVNETQQLQGKIRALQEQLENGPNTQLARLQQENSILRDALN----QATSQTESKQNAELAKLRQECNKLMKELSEK 431
Cdd:PTZ00121 1432 KADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKkkaeEAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 432 SEVLQQEEQQKKSWEIKAAASEKQIEQLQTSQREMEATLQKRLDEV--SDELRKTQTSYRS------LVADAEKAKGQQQ 503
Cdd:PTZ00121 1512 ADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELkkAEEKKKAEEAKKAeedknmALRKAEEAKKAEE 1591
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 504 SIAELQAKLLSSETEVKSKLL---ELDSLKGKLQEASSENTRLLERIKSIEA--LLEAGRMREAEEDRDLQAANEAEMKQ 578
Cdd:PTZ00121 1592 ARIEEVMKLYEEEKKMKAEEAkkaEEAKIKAEELKKAEEEKKKVEQLKKKEAeeKKKAEELKKAEEENKIKAAEEAKKAE 1671
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024390164 579 LQLRLQEKTDQLLSLEREAAELREAMEQQKTKNNDLREKNWKAVEALTTVEKACEEKLLAATKAKEE 645
Cdd:PTZ00121 1672 EDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKE 1738
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
405-940 |
1.93e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 65.16 E-value: 1.93e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 405 QTESKQNAELAKLRQECNKLMKELSEKSEvlqqeEQQKKSWEIKAAASEKQIEQlqtsqremeaTLQKRLDEV--SDELR 482
Cdd:PTZ00121 1373 KEEAKKKADAAKKKAEEKKKADEAKKKAE-----EDKKKADELKKAAAAKKKAD----------EAKKKAEEKkkADEAK 1437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 483 KTQTSYRSlvADAEKAKGQQQSIAE---LQAKLLSSETEVKSKLLELDSLKGKLQEASSENTRLLERIKSIEALLEAGRM 559
Cdd:PTZ00121 1438 KKAEEAKK--ADEAKKKAEEAKKAEeakKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEA 1515
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 560 REAEEDRDLQAANEAEMKQLQLRLQEKTDQLLSLE-REAAELREAMEQQKTKNNDLREKNWKAVEALTTVEKACEEKLLA 638
Cdd:PTZ00121 1516 KKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADElKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIE 1595
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 639 ATKAKEELAHQLDVLQTRTKETLLSALPEVTVSQQDYEAWLQEFKEKAVNVLKQHTVMTEPVDSALKL-----------K 707
Cdd:PTZ00121 1596 EVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAaeeakkaeedkK 1675
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 708 EAEEAQSTLQAECEQYRAILAETEGMLRDLQKSVEEEEQVWKAKLTVSEEELQKSQLQLKSLEDMIEKLKA-ELQSTDQL 786
Cdd:PTZ00121 1676 KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAeEAKKDEEE 1755
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 787 KEYISLLEAQLENHLQTASSERQNYTKEveglrqllsESQEQLEAAKTETQKQSKEL----ALLKMQLEQNEALMEKEQE 862
Cdd:PTZ00121 1756 KKKIAHLKKEEEKKAEEIRKEKEAVIEE---------ELDEEDEKRRMEVDKKIKDIfdnfANIIEGGKEGNLVINDSKE 1826
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2024390164 863 LRQKLTRELEEAQSSACSLQAELEKLRLAENAAASdmeEAQHLKERLEKEKKLTRDLGQAATKLQELLKVTQDQLAKE 940
Cdd:PTZ00121 1827 MEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENG---EDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIERE 1901
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
288-958 |
2.76e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 64.61 E-value: 2.76e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 288 LKRQLEEKEKQLTAEQEDAAAARNKLRELSKELAAEKAKAAASESKLKEQLVTREREITAVQARMQASYQDHVNETQQLQ 367
Cdd:pfam02463 191 DLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQV 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 368 GKIRALQEQLENGPNTQLARLQQENSILRDALNQATSQTESKQNaELAKLRQECNKLMKELSEKSEVLQQEEQQKKSWEI 447
Cdd:pfam02463 271 LKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEE-KLKESEKEKKKAEKELKKEKEEIEELEKELKELEI 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 448 KAAASEKQIEQLQTSQREMEATLQKRLDEVSDELRKTQTSYRSLV---ADAEKAKGQQQSIAELQAKLLSSETEVKSKLL 524
Cdd:pfam02463 350 KREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEeelELKSEEEKEAQLLLELARQLEDLLKEEKKEEL 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 525 ELDSLKGKLQEASSENTRLLERIKSIEALLEAGRMREAEEDRDLQAANEAEMKQLQLRLQEKTDQL--------LSLERE 596
Cdd:pfam02463 430 EILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLeersqkesKARSGL 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 597 AAELREAMEQQKTKNNDLREKNWKAVEALTTVEKACEEKLLAATKAKEELAHQLDVLQTRTKETLLSALPEVTVSQQDYE 676
Cdd:pfam02463 510 KVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKL 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 677 AWLQEFKEKAVNVLK-----QHTVMTEPVDSALKLKEAEEAQSTLQAECEQYRAILAETEGMLRDLQKSVEEEEQVWKAK 751
Cdd:pfam02463 590 PLKSIAVLEIDPILNlaqldKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLS 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 752 LTVSEEELQKSQLQLKSLEDMIEKLKAELQST---DQLKEYISLLEAQLENHLQTASSERQNYTKEVEGLRQLLSESQEQ 828
Cdd:pfam02463 670 ELTKELLEIQELQEKAESELAKEEILRRQLEIkkkEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEE 749
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 829 LEAAKTETQKQSKELALLKMQLEQNEALMEKEQELRQKLTRELEEA-QSSACSLQAELEKLRLAENAAASDMEEAQHLKE 907
Cdd:pfam02463 750 EEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKlKAQEEELRALEEELKEEAELLEEEQLLIEQEEK 829
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|.
gi 2024390164 908 RLEKEKKLTRDLGQAATKLQELLKVTQDQLAKERETVKKLKEQLHEKGEED 958
Cdd:pfam02463 830 IKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELE 880
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
432-956 |
4.13e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 63.93 E-value: 4.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 432 SEVLQQEEQQKKSWEIKAAASEKQIEQLQTSQREMEATLqKRLDEVSDELRKTQTSYRSLVADAEKAKGQQQSIAELQAK 511
Cdd:PRK03918 168 GEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVL-REINEISSELPELREELEKLEKEVKELEELKEEIEELEKE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 512 LLSSETEVKS---KLLELDSLKGKLQEASSENTRLLERIKSIEALLEAGRMREAEEDRDLQAANEAEMKQLQLR-----L 583
Cdd:PRK03918 247 LESLEGSKRKleeKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEeeingI 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 584 QEKTDQLLSLEREAAELREAMEQQKTKNNDLREKNWKAVEALTTVEKACEEKLLAATKAKEELAHQLDVLQTRTKE---- 659
Cdd:PRK03918 327 EERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEieee 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 660 --TLLSALPEVTVSQQDYEAWLQEFK---------------EKAVNVLKQHTVmtEPVDSALKLKEAEEAQSTLQAECEQ 722
Cdd:PRK03918 407 isKITARIGELKKEIKELKKAIEELKkakgkcpvcgrelteEHRKELLEEYTA--ELKRIEKELKEIEEKERKLRKELRE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 723 YRAILAETEGMLR-----DLQKSVEEE-EQVWKAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQStdqLKEYISLLEAq 796
Cdd:PRK03918 485 LEKVLKKESELIKlkelaEQLKELEEKlKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEK---LEELKKKLAE- 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 797 LENHLQTASSERQNYTKEvegLRQLLSESQEQLEAAKTETQKQSKELallkMQLEQNEALMEKEQELRQKLTRELEEAQS 876
Cdd:PRK03918 561 LEKKLDELEEELAELLKE---LEELGFESVEELEERLKELEPFYNEY----LELKDAEKELEREEKELKKLEEELDKAFE 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 877 SACSLQAELEKLRLAENAAASDMEEAQHLKERlEKEKKLTRDLGQAATKLQELlkvtQDQLAKERETVKKLKEQLHEKGE 956
Cdd:PRK03918 634 ELAETEKRLEELRKELEELEKKYSEEEYEELR-EEYLELSRELAGLRAELEEL----EKRREEIKKTLEKLKEELEEREK 708
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
288-962 |
7.03e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 63.07 E-value: 7.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 288 LKRQLEEKEKQLTAEQEDAAAARNKLRELSKELAAEKAKAAASESKLKEQLVTREREITAVQARMQASYQDHVNETQQLQ 367
Cdd:pfam02463 167 LKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 368 GKIRALQEQLENGPNTQLARLQQENSILRDALNQATSQTE--SKQNAELAKLRQECNKLMKELSEKSEVLQQEEQQKKSW 445
Cdd:pfam02463 247 RDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEelKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 446 EIKAAASEKQIEQLQTSQREMEATLQKRLDEVSDELRKTQTSYRSLVADAEKAKGQQQSIaelqakllSSETEVKSKLLE 525
Cdd:pfam02463 327 EKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERL--------SSAAKLKEEELE 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 526 LDSLKGKLQEASSENTRLLERIKSIEALLEAGRMREAEEDRDLQAANEAEmKQLQLRLQEKTDQLLSLEREAAELREAME 605
Cdd:pfam02463 399 LKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTE-EKEELEKQELKLLKDELELKKSEDLLKET 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 606 QQKTKNndlreknwkavealttvekacEEKLLAATKAKEELAHQLDVLQTRTKETLLSALPEVTVSQQDYEAWLQEFKEK 685
Cdd:pfam02463 478 QLVKLQ---------------------EQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGV 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 686 AVNVLKQHTVMTEPVDSALKLKEAEEAQSTLQAECEQYRAI--LAETEGMLRDLQKSVEEEEQVWKAKLTVSEEELQKSQ 763
Cdd:pfam02463 537 AVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGArkLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEAD 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 764 LQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQLENHLQTASSERQNYTKEVEGLRQLLSESQEQLEAAKTETQKQSKEL 843
Cdd:pfam02463 617 EDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILR 696
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 844 ALLKMQLEQnEALMEKEQELRQKLTRELEEAQSSACSLQAELEKLRLAENAAASDMEEAQHLKERLEKEKKLTRDLGQAA 923
Cdd:pfam02463 697 RQLEIKKKE-QREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKE 775
|
650 660 670
....*....|....*....|....*....|....*....
gi 2024390164 924 TKLQELLKVTQDQLAKERETVKKLKEQLHEKGEEDSSKE 962
Cdd:pfam02463 776 LAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEA 814
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
558-911 |
1.08e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 1.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 558 RMREAEEDRDLQAANEAeMKQLQLRLQEKTDQLLSLEREAaelrEAMEQQKTKNNDLREKNWkavEALTTVEKACEEKLL 637
Cdd:TIGR02168 171 KERRKETERKLERTREN-LDRLEDILNELERQLKSLERQA----EKAERYKELKAELRELEL---ALLVLRLEELREELE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 638 AATKAKEELAHQLDVLQTRTKETLLSAlpevtvsqqdyeawlqEFKEKAVNVLKQhtvmtepvdSALKLKEAEEAQSTLQ 717
Cdd:TIGR02168 243 ELQEELKEAEEELEELTAELQELEEKL----------------EELRLEVSELEE---------EIEELQKELYALANEI 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 718 AECEQYRAILAETEGMLRDLQKSVEEEEQVWKAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQL 797
Cdd:TIGR02168 298 SRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEEL 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 798 ENHLQTASSER-------QNYTKEVEGLRQLLSESQEQLEAAKTETQKQSKELALLKMQlEQNEALMEKEQELrQKLTRE 870
Cdd:TIGR02168 378 EEQLETLRSKVaqlelqiASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELK-ELQAELEELEEEL-EELQEE 455
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 2024390164 871 LEEAQSSACSLQAELEKLRLAENAAASDMEEAQHLKERLEK 911
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER 496
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
729-957 |
1.74e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 61.85 E-value: 1.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 729 ETEGMLRDLQKSVEEeeqvwkakLTVSEEELQKSQLQLKSLEDM------IEKLKAELQSTDQLKEYISLLEAQLENHLq 802
Cdd:COG4913 222 DTFEAADALVEHFDD--------LERAHEALEDAREQIELLEPIrelaerYAAARERLAELEYLRAALRLWFAQRRLEL- 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 803 tasserqnYTKEVEGLRQLLSESQEQLEAAKTETQKQSKELALLKMQLEQN--EALMEKEQELRQkLTRELEEAQSSACS 880
Cdd:COG4913 293 --------LEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNggDRLEQLEREIER-LERELEERERRRAR 363
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024390164 881 LQAELEKLRLAENAAASDMEEAQhlkerlekekkltRDLGQAATKLQELLKVTQDQLAKERETVKKLKEQLHEKGEE 957
Cdd:COG4913 364 LEALLAALGLPLPASAEEFAALR-------------AEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAE 427
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
197-931 |
2.11e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.70 E-value: 2.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 197 IKKPEALPTHEEQKHDGPVKKKSASKKKAEPAPadsdgplylpyktlvstissmafsegEAQQLIEILTERAGIVQDTWH 276
Cdd:PTZ00121 1283 LKKAEEKKKADEAKKAEEKKKADEAKKKAEEAK--------------------------KADEAKKKAEEAKKKADAAKK 1336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 277 TATQKGDPVAVLKRQLEEKEKQLTAEQEDAAAARNKLRELSKELAAEKAKAAASESKLKEQLVTREREITAVQARMQASY 356
Cdd:PTZ00121 1337 KAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAA 1416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 357 QDHVNETQQLQGKIRALQEQLENGPNTQLARLQQENSILRDALNQATSQTESKQNAELAKLRQECNKLMKELSEKS---- 432
Cdd:PTZ00121 1417 KKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAeeak 1496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 433 ----EVLQQEEQQKKSWEIKAAASEKQIEQLQTSQREMEATLQKRLDEV--SDELRKTQTSYRSlvadAEKAKGQQQSIA 506
Cdd:PTZ00121 1497 kkadEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKkkADELKKAEELKKA----EEKKKAEEAKKA 1572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 507 ELQAKLLSSETEVKSKLLELDSLKGKLQEASSENTRLLERIKSIEALLEAGRMREAEEDRDlqaaneaEMKQLQLRLQEK 586
Cdd:PTZ00121 1573 EEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKK-------KVEQLKKKEAEE 1645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 587 TdqllsleREAAELREAMEQQKTKNNDLREKNWKAVEALTTVEKACEEKLLAATKAKEELAHQLDVLQTRTKEtllsalp 666
Cdd:PTZ00121 1646 K-------KKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKE------- 1711
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 667 evtvsqqdyeawlQEFKEKAVNVLKQHTVMTEPVDSALKLKEAEEAQStlqaecEQYRAILAETEGMLRDLQKSVEEEEQ 746
Cdd:PTZ00121 1712 -------------AEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKA------EEAKKDEEEKKKIAHLKKEEEKKAEE 1772
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 747 VWKAKLTVSEEELQKsqlqlkslEDMIEKLKAELQSTDQLKEYISLLEAQLENHLQTASSERQnytkEVEGLRQLLSESQ 826
Cdd:PTZ00121 1773 IRKEKEAVIEEELDE--------EDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEM----EDSAIKEVADSKN 1840
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 827 EQLEAAKtETQKQSKELALLKMQLEQNEALMEKEQELRQKLTRELEEAQSSACSLQAELEKLRLAENAAASDMEEaqhLK 906
Cdd:PTZ00121 1841 MQLEEAD-AFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREIPNNNMAGKNNDI---ID 1916
|
730 740
....*....|....*....|....*
gi 2024390164 907 ERLEKEKKLTRDLGQAATKLQELLK 931
Cdd:PTZ00121 1917 DKLDKDEYIKRDAEETREEIIKISK 1941
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
288-951 |
2.90e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 2.90e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 288 LKRQLEEKEKQLTAEQEDAAAARNKLRELSKELAAEKAKAAASE--SKLKEQLVTREREITAVQarmqasYQDHVNETQQ 365
Cdd:TIGR02168 170 YKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAEryKELKAELRELELALLVLR------LEELREELEE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 366 LQGKIRALQEQLENGpNTQLARLQQENSILRDALNQAtsqteskqNAELAKLRQECNKLMKELSEKSEVLQQEEQQKKSW 445
Cdd:TIGR02168 244 LQEELKEAEEELEEL-TAELQELEEKLEELRLEVSEL--------EEEIEELQKELYALANEISRLEQQKQILRERLANL 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 446 EIKAAASEKQIEQLQTSQREmeatLQKRLDEVSDELRKTQTSYRSLVADAEKAKGQQQ----SIAELQAKLLSSETEVKS 521
Cdd:TIGR02168 315 ERQLEELEAQLEELESKLDE----LAEELAELEEKLEELKEELESLEAELEELEAELEelesRLEELEEQLETLRSKVAQ 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 522 KLLELDSLKGKLQEASSENTRLLERIKSIEALLEAGRMREAEEDRDLQAANEAEMKQLQLRLQEktdQLLSLEREAAELR 601
Cdd:TIGR02168 391 LELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQE---ELERLEEALEELR 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 602 EAMEQQKTKNNDLREKNWKAVEALTTVEKACEEKLLAATKAKEELAHQLDvlqtrtKETLLSALPEVTVSQQDYEAWLqe 681
Cdd:TIGR02168 468 EELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSG------LSGILGVLSELISVDEGYEAAI-- 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 682 fkEKAVNVLKQHTVMTepvdsalKLKEAEEAQSTLQAECEQYRAILAETegmlrdlqksveeeeQVWKAKLTVSEEELQK 761
Cdd:TIGR02168 540 --EAALGGRLQAVVVE-------NLNAAKKAIAFLKQNELGRVTFLPLD---------------SIKGTEIQGNDREILK 595
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 762 SQLQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQLENHLQTASSERQNYTKEVEGLRQLLSESQEQLEAAKTETQKQSK 841
Cdd:TIGR02168 596 NIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILER 675
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 842 elallKMQLEQNEALMEKEQELRQKLTRELEEAQSSACSLQAELEKLRLAENAAASDMEEAQHLKERLEKE----KKLTR 917
Cdd:TIGR02168 676 -----RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEveqlEERIA 750
|
650 660 670
....*....|....*....|....*....|....
gi 2024390164 918 DLGQAATKLQELLKVTQDQLAKERETVKKLKEQL 951
Cdd:TIGR02168 751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEI 784
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
341-945 |
4.01e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 60.70 E-value: 4.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 341 REREITAVQARMQASYQDHVNETQQLQGKIRALQEQLENGpNTQLARLQQENSILRDALNQATSQTESKQNAELAKLRQE 420
Cdd:COG4913 268 RERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARL-EAELERLEARLDALREELDELEAQIRGNGGDRLEQLERE 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 421 CNKLMKELSEKSEVLQQEEQQKKSWEIKAAASEKQIEQLQtsqremeATLQKRLDEVSDELRKTQTSYRSLVADAEKAKG 500
Cdd:COG4913 347 IERLERELEERERRRARLEALLAALGLPLPASAEEFAALR-------AEAAALLEALEEELEALEEALAEAEAALRDLRR 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 501 QQQSIAELQAKLLSSETEVKSKLLEL-DSLKGKLQEASSE--------NTRLLERI--KSIEALLEAGRMREAEEDRDLQ 569
Cdd:COG4913 420 ELRELEAEIASLERRKSNIPARLLALrDALAEALGLDEAElpfvgeliEVRPEEERwrGAIERVLGGFALTLLVPPEHYA 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 570 AANEAeMKQLQLRLQektdqlLSLEREAAELREAmEQQKTKNNDLREKnwkaveaLTTVEKACEEKLlaatkaKEELAHQ 649
Cdd:COG4913 500 AALRW-VNRLHLRGR------LVYERVRTGLPDP-ERPRLDPDSLAGK-------LDFKPHPFRAWL------EAELGRR 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 650 LDVLQTRTKETLLSALPEVTVSQQDYEAWlqEFKEKAvnvlKQHTVMTEPV---DSALKLKEAEEAQSTLQAECEQYRAI 726
Cdd:COG4913 559 FDYVCVDSPEELRRHPRAITRAGQVKGNG--TRHEKD----DRRRIRSRYVlgfDNRAKLAALEAELAELEEELAEAEER 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 727 LAEtegmLRDLQKSVEEEEQVWKAKLTVSEEELQKSQLQ--LKSLEDMIEKLKAELQSTDQLKEYISLLEAQ---LENHL 801
Cdd:COG4913 633 LEA----LEAELDALQERREALQRLAEYSWDEIDVASAEreIAELEAELERLDASSDDLAALEEQLEELEAEleeLEEEL 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 802 QTASSERQNYTKEVEGLRQLLSESQEQLEAAktETQKQSKELALLKMQLEQnEALMEKEQELRQKLTRELEEAQSSACSL 881
Cdd:COG4913 709 DELKGEIGRLEKELEQAEEELDELQDRLEAA--EDLARLELRALLEERFAA-ALGDAVERELRENLEERIDALRARLNRA 785
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 882 QAELEKLR--------LAENAAASDMEEAQHLKERLEKEKklTRDLGQAATKLQELLKVTQDQ--------LAKERETVK 945
Cdd:COG4913 786 EEELERAMrafnrewpAETADLDADLESLPEYLALLDRLE--EDGLPEYEERFKELLNENSIEfvadllskLRRAIREIK 863
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
288-957 |
5.03e-09 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 60.62 E-value: 5.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 288 LKRQLEEKEKQLTAEQEDAAAARNKLRELSKELaaekakaaasesklkEQLVTREREIT-AVQARMQASYQDHVNETQQL 366
Cdd:pfam12128 331 HGAFLDADIETAAADQEQLPSWQSELENLEERL---------------KALTGKHQDVTaKYNRRRSKIKEQNNRDIAGI 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 367 QGKIRALQEQLENGPNTQLARLQQENSILRDALNQATS-----QTESKQNAELAKLRQECNKLMKELSEKSEVLQ----- 436
Cdd:pfam12128 396 KDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLefneeEYRLKSRLGELKLRLNQATATPELLLQLENFDerier 475
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 437 -QEEQQKKSWEIKAAASE---------KQIEQLQTSQREMEaTLQKRLDEVSDELRKTQTSYRSLVAdaEKAKGQQQSIA 506
Cdd:pfam12128 476 aREEQEAANAEVERLQSElrqarkrrdQASEALRQASRRLE-ERQSALDELELQLFPQAGTLLHFLR--KEAPDWEQSIG 552
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 507 elqaKLLSSETEVKSKLLELDSLKGKLQEASSENTRL-LERIKSIE--ALLEAGRMREAEEDRDLQAANEAEMKQlqlrl 583
Cdd:pfam12128 553 ----KVISPELLHRTDLDPEVWDGSVGGELNLYGVKLdLKRIDVPEwaASEEELRERLDKAEEALQSAREKQAAA----- 623
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 584 qEKTDQLLSLEREAAELREAMEQQKTKNNDLREKNWKAVEalTTVEKACEEKLLAATKAKEELAHQLDvlqtrtketlls 663
Cdd:pfam12128 624 -EEQLVQANGELEKASREETFARTALKNARLDLRRLFDEK--QSEKDKKNKALAERKDSANERLNSLE------------ 688
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 664 alPEVTVSQQDYEAWLQEFKEKAVNVLKQHTVMTEPVDSALKLKEAEEAQSTLQAECEQYRAILAETEGMLRDLqksvee 743
Cdd:pfam12128 689 --AQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETWYKRDL------ 760
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 744 eeqvwkAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEYISlleaqlenhlQTASSERQNYTKEVEGLRQLLS 823
Cdd:pfam12128 761 ------ASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQ----------ETWLQRRPRLATQLSNIERAIS 824
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 824 ESQEQLEAAKTETQKQSKELallkmqleqnealmEKEQELRQKLTRELEEAQSSACSLQAELEKLRLAENAAASDMEEAQ 903
Cdd:pfam12128 825 ELQQQLARLIADTKLRRAKL--------------EMERKASEKQQVRLSENLRGLRCEMSKLATLKEDANSEQAQGSIGE 890
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 2024390164 904 HLKERLEKEKKLTRDLGQAATKLQELLKVTQDQLAKE-RETVKKLKEQLHEKGEE 957
Cdd:pfam12128 891 RLAQLEDLKLKRDYLSESVKKYVEHFKNVIADHSGSGlAETWESLREEDHYQNDK 945
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
286-610 |
7.37e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.08 E-value: 7.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 286 AVLKRQLEEKEKQLTAEQEDAAAARNKLRELSKE---LAAEKAKAAASESKLKEQLVTREREITAVQARMQasyqDHVNE 362
Cdd:TIGR02169 691 SSLQSELRRIENRLDELSQELSDASRKIGEIEKEieqLEQEEEKLKERLEELEEDLSSLEQEIENVKSELK----ELEAR 766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 363 TQQLQGKIRALQEQLENgpntQLARLQQENSILRDALNQATSQTESKQNAELAKLRQECNKLMKELSEKSEVLQQEEQQK 442
Cdd:TIGR02169 767 IEELEEDLHKLEEALND----LEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQR 842
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 443 KSWEIKAAASEKQIEQLQTSQREMEAtlqkRLDEVSDELRKTQTSYRSLVADAEKAKGQqqsIAELQAKLLSSETEVKSK 522
Cdd:TIGR02169 843 IDLKEQIKSIEKEIENLNGKKEELEE----ELEELEAALRDLESRLGDLKKERDELEAQ---LRELERKIEELEAQIEKK 915
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 523 LLELDSLKGKLQEASSENTRLLERIKSIEAL---------LEAGRMREAEEDRDLQAAN---EAEMKQLQLRLQEKTDQL 590
Cdd:TIGR02169 916 RKRLSELKAKLEALEEELSEIEDPKGEDEEIpeeelsledVQAELQRVEEEIRALEPVNmlaIQEYEEVLKRLDELKEKR 995
|
330 340
....*....|....*....|
gi 2024390164 591 LSLEREAAELREAMEQQKTK 610
Cdd:TIGR02169 996 AKLEEERKAILERIEEYEKK 1015
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
472-957 |
8.08e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 59.69 E-value: 8.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 472 KRLDEVSDELRKTQTSYRSLVADAEKAKGQqqsIAELQAKLLSSETEVKSKLLELDSLKGKLQEASSEntrlLERIKSIE 551
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTENIEEL---IKEKEKELEEVLREINEISSELPELREELEKLEKE----VKELEELK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 552 ALLEAGRMREAEEDRDLQAAnEAEMKQLQLRLQEKTDQLLSLEREAAELREaMEQQKTKNNDLREKNWKAVEALTTVEKA 631
Cdd:PRK03918 238 EEIEELEKELESLEGSKRKL-EEKIRELEERIEELKKEIEELEEKVKELKE-LKEKAEEYIKLSEFYEEYLDELREIEKR 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 632 cEEKLLAATKAKEELAHQLDVLQTRTKEtLLSALPEVTVSQQDYEAWLQEF-----KEKAVNVLKQHTVMTEPVDSALKL 706
Cdd:PRK03918 316 -LSRLEEEINGIEERIKELEEKEERLEE-LKKKLKELEKRLEELEERHELYeeakaKKEELERLKKRLTGLTPEKLEKEL 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 707 KEAEEAQSTLQAECEQYRAILAETEGMLRDLQKSVEEEEQV----------------------WKAKLTVSEEELQKSQL 764
Cdd:PRK03918 394 EELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAkgkcpvcgrelteehrkelleeYTAELKRIEKELKEIEE 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 765 QLKSLEDMIEKLKAELQSTDQLKEYISLLEA--QLENHLQTASSER-QNYTKEVEGLRQLLSESQEQLEAAKTETqkqsK 841
Cdd:PRK03918 474 KERKLRKELRELEKVLKKESELIKLKELAEQlkELEEKLKKYNLEElEKKAEEYEKLKEKLIKLKGEIKSLKKEL----E 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 842 ELALLKMQLEQ-NEALMEKEQELRQKLTRELEEAQSSACSLQAELEKLRLAENAAASDMEEAQHLKERLEKEKKLTRDLG 920
Cdd:PRK03918 550 KLEELKKKLAElEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELD 629
|
490 500 510
....*....|....*....|....*....|....*..
gi 2024390164 921 QAATKLQELLKVTQDQLAKERETVKKLKEQLHEKGEE 957
Cdd:PRK03918 630 KAFEELAETEKRLEELRKELEELEKKYSEEEYEELRE 666
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
529-929 |
1.23e-08 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 59.20 E-value: 1.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 529 LKGKLQEASSENTRLLERIKSIEALLEAGRMREAeedrDLQAANE-AEMKQLQLRLQEKtdqllsLEREAAELREAMEqq 607
Cdd:COG3096 294 LFGARRQLAEEQYRLVEMARELEELSARESDLEQ----DYQAASDhLNLVQTALRQQEK------IERYQEDLEELTE-- 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 608 ktknnDLREKNwKAVEALTTVEKACEEKLLAATKAKEELAHQL-------DVLQTRT-----------KETLLSALPEVT 669
Cdd:COG3096 362 -----RLEEQE-EVVEEAAEQLAEAEARLEAAEEEVDSLKSQLadyqqalDVQQTRAiqyqqavqaleKARALCGLPDLT 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 670 VSQqdYEAWLQEFKEKavnvlkQHTVMTEPVDSALKLKEAEEAQSTLQAECEQYRAILAETE---------GMLRDL--Q 738
Cdd:COG3096 436 PEN--AEDYLAAFRAK------EQQATEEVLELEQKLSVADAARRQFEKAYELVCKIAGEVErsqawqtarELLRRYrsQ 507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 739 KSVEEEEQVWKAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQLENHLQTASSERQNytkevegl 818
Cdd:COG3096 508 QALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQ-------- 579
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 819 rqlLSESQEQLEAAKTETQK-QSKELALLKMQleqnealmEKEQELRQKLTRELEEAQSSACSLQAELEKLRlaenAAAS 897
Cdd:COG3096 580 ---RSELRQQLEQLRARIKElAARAPAWLAAQ--------DALERLREQSGEALADSQEVTAAMQQLLERER----EATV 644
|
410 420 430
....*....|....*....|....*....|...
gi 2024390164 898 DMEEAQHLKERLEKE-KKLTRDLGQAATKLQEL 929
Cdd:COG3096 645 ERDELAARKQALESQiERLSQPGGAEDPRLLAL 677
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
726-963 |
1.33e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 1.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 726 ILAETEGMLRDLQKSVEEEEQ--------------VWKAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQSTD----QLK 787
Cdd:TIGR02168 194 ILNELERQLKSLERQAEKAERykelkaelrelelaLLVLRLEELREELEELQEELKEAEEELEELTAELQELEekleELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 788 EYISLLEAQ-----------------LENHLQTASSERQNYTKEVEGLRQLLSESQEQLEAAKTETQKQSKELALLKMQL 850
Cdd:TIGR02168 274 LEVSELEEEieelqkelyalaneisrLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEEL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 851 EQNEALMEKEQELRQKLTRELEEAQSSACSLQAELEKLRLAENAAASDMEEAQHLKERLEKEK-KLTRDLGQAATKLQEL 929
Cdd:TIGR02168 354 ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRReRLQQEIEELLKKLEEA 433
|
250 260 270
....*....|....*....|....*....|....*
gi 2024390164 930 -LKVTQDQLAKERETVKKLKEQLHEKGEEDSSKEG 963
Cdd:TIGR02168 434 eLKELQAELEELEEELEELQEELERLEEALEELRE 468
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
539-909 |
1.98e-08 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 58.43 E-value: 1.98e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 539 ENTRLLERIKSIE-ALLEAGRMREAEEDRDLQAANEAEmkQLQLRLQEKTDQLLSLEREAAELREAMEQQKT---KNNDL 614
Cdd:PRK04863 280 ERRVHLEEALELRrELYTSRRQLAAEQYRLVEMARELA--ELNEAESDLEQDYQAASDHLNLVQTALRQQEKierYQADL 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 615 REKNWKAVEALTTVEKA------CEEKLLAATKAKEELAHQL-------DVLQTRT-----------KETLLSALPEVTV 670
Cdd:PRK04863 358 EELEERLEEQNEVVEEAdeqqeeNEARAEAAEEEVDELKSQLadyqqalDVQQTRAiqyqqavqaleRAKQLCGLPDLTA 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 671 SQqdYEAWLQEFKEK-----------------AVNVLKQHTVMTEPVDSALKLKEAEEAQSTLQAECEQYRAilaetegm 733
Cdd:PRK04863 438 DN--AEDWLEEFQAKeqeateellsleqklsvAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLRE-------- 507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 734 lrdlQKSVEEEEQVWKAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQLENHLQTASSERQNYTK 813
Cdd:PRK04863 508 ----QRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMA 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 814 EVEGLRQLLSESQEqLEAAKTETQKQSKELALLKMQ----LEQNEALMEKEQELRQK---LTRELEEAQSSACSLQAELE 886
Cdd:PRK04863 584 LRQQLEQLQARIQR-LAARAPAWLAAQDALARLREQsgeeFEDSQDVTEYMQQLLERereLTVERDELAARKQALDEEIE 662
|
410 420
....*....|....*....|...
gi 2024390164 887 KLrlaENAAASDMEEAQHLKERL 909
Cdd:PRK04863 663 RL---SQPGGSEDPRLNALAERF 682
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
285-918 |
2.42e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.16 E-value: 2.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 285 VAVLKRQLEEKE---KQLTAEQEDAAAARNKLRELSKELAAEKAKAAASESKLKEQLVTREREITAVQARMQ---ASYQD 358
Cdd:TIGR02169 303 IASLERSIAEKErelEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEevdKEFAE 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 359 HVNETQQLQGKIRALQEQLE--NGPNTQLARLQQENSILRDALNQATSQTESKQN---AELAKLRQECNKLMKELSEKSE 433
Cdd:TIGR02169 383 TRDELKDYREKLEKLKREINelKRELDRLQEELQRLSEELADLNAAIAGIEAKINeleEEKEDKALEIKKQEWKLEQLAA 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 434 VLQQEEQQKKSWEIKAAASEKQIEQLQTSQREMEATLQKRLDE------VSDELRKTQTSYRSLVADAEKAKGQ------ 501
Cdd:TIGR02169 463 DLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERvrggraVEEVLKASIQGVHGTVAQLGSVGERyataie 542
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 502 ------------------QQSIAELQAKLLSSET-------EVKSKLLELDSLKGKLQEASS----------------EN 540
Cdd:TIGR02169 543 vaagnrlnnvvveddavaKEAIELLKRRKAGRATflplnkmRDERRDLSILSEDGVIGFAVDlvefdpkyepafkyvfGD 622
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 541 TRLLERIKSIEALLEAGRMREAEED-----------RDLQAANEAEMKQLQLRLQEKTDQLLSLEREAAELREAMEQQKT 609
Cdd:TIGR02169 623 TLVVEDIEAARRLMGKYRMVTLEGElfeksgamtggSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIEN 702
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 610 KNNDLREKNWKAVEALTTVEKACEEKLLAATKAKEELAHQLDVLQTRTKEtllsaLPEVTVSQQDYEAWLQEFKEKAVNV 689
Cdd:TIGR02169 703 RLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE-----IENVKSELKELEARIEELEEDLHKL 777
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 690 LKQhtvmtepvDSALKLKEAEEAQSTLQAECEQYRAILAETEGMLRDLQKSVEEEEQvwkaKLTVSEEELQKSQLQLKSL 769
Cdd:TIGR02169 778 EEA--------LNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTL----EKEYLEKEIQELQEQRIDL 845
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 770 EDMIEKLKAELQSTDQLKEYISLLEAQLENHLQTASSERQNYTKEVEGLRQLLSESQEQLEAAKTETQKQSKELALLKMQ 849
Cdd:TIGR02169 846 KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAK 925
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2024390164 850 LE-QNEALMEKEQELRQKL-----TRELEEAQSSACSLQAELEKLRLAENAAASDMEEAQ-HLKERLEKEKKLTRD 918
Cdd:TIGR02169 926 LEaLEEELSEIEDPKGEDEeipeeELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLkRLDELKEKRAKLEEE 1001
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
425-889 |
2.51e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 57.86 E-value: 2.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 425 MKELSEKSEVLQQEEQQKKSWeikaaasEKQIEQLQTSQREMEAtLQKRLDEVSDELRKTQtsyrslvadaekakgQQQS 504
Cdd:COG4717 70 LKELKELEEELKEAEEKEEEY-------AELQEELEELEEELEE-LEAELEELREELEKLE---------------KLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 505 IAELQAKLLSSETEVKSKLLELDSLKGKLQEASsentRLLERIKSIEALLEAGRMREAEEDRDLQAANEAEMKQLQLRLQ 584
Cdd:COG4717 127 LLPLYQELEALEAELAELPERLEELEERLEELR----ELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELE 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 585 EKTDQLLSLEREAAELREAMEQQKTKNNDLREKNWKAVEALTTVEKACEEKLLAATKAKEELAHQLDVLQTRTKETLLSA 664
Cdd:COG4717 203 ELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLV 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 665 LPEVTVsqqdyeAWLQEFKEKAVNVLKQHTVMTEPVDSALKLKEAEEAQSTLQAECEQYRAILAETEGMLRDLQKSVEEE 744
Cdd:COG4717 283 LGLLAL------LFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREA 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 745 EQvWKAKLTVSEEELQKSQL----QLKSLEDMIEKLKAeLQSTDQLKEYISLLEAQLENHLQTASSERQNYTKevEGLRQ 820
Cdd:COG4717 357 EE-LEEELQLEELEQEIAALlaeaGVEDEEELRAALEQ-AEEYQELKEELEELEEQLEELLGELEELLEALDE--EELEE 432
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024390164 821 LLSESQEQLEAAKTETQKQSKELALLKMQLEQ---NEALMEKEQELRQKLTR--ELEEAQSSACSLQAELEKLR 889
Cdd:COG4717 433 ELEELEEELEELEEELEELREELAELEAELEQleeDGELAELLQELEELKAElrELAEEWAALKLALELLEEAR 506
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
336-912 |
2.72e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 58.21 E-value: 2.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 336 EQLVTR-EREITAVQARMQASYqdhvNETQQLQGKIRALQEQLENGPNT---QLARLQQENSILRDALNQATSQTESK-- 409
Cdd:pfam15921 270 EQLISEhEVEITGLTEKASSAR----SQANSIQSQLEIIQEQARNQNSMymrQLSDLESTVSQLRSELREAKRMYEDKie 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 410 --------QNAELAKLRQECNKLMKELSEKSEVLQQEEQQKKSWEIKAAASEKQIEQLQTSQREMEATLQKRLDEVSDEL 481
Cdd:pfam15921 346 elekqlvlANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRN 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 482 RKTQTSYRSLVADAEKAKGQ-QQSIAELQAKLLSSEtEVKSKLLELDSLKGKLQEASSENTRLLERIKSIEALLEAGRMR 560
Cdd:pfam15921 426 MEVQRLEALLKAMKSECQGQmERQMAAIQGKNESLE-KVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTAS 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 561 EAEEDRDLQAANeAEMKQLQLRLQEKTDQLLSLEREAAELREAMEQqktknndlreknwkaVEALTtVEKACEEKLLAAT 640
Cdd:pfam15921 505 LQEKERAIEATN-AEITKLRSRVDLKLQELQHLKNEGDHLRNVQTE---------------CEALK-LQMAEKDKVIEIL 567
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 641 KAKEELAHQLDVLQTRTKETLLSALPEVTVSQQDYEAWLQEFK----EKAVNVLKQHTVMTEPVDSALKLKEAEEAQSTL 716
Cdd:pfam15921 568 RQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKilkdKKDAKIRELEARVSDLELEKVKLVNAGSERLRA 647
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 717 QAECEQYRAILAETEGMLRDLQKSVEEEEQVWKAKLTVSEEELQ----KSQLQLKSLEDMIEKLKAELQSTDQLKEYISL 792
Cdd:pfam15921 648 VKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMEtttnKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMK 727
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 793 LEAQLENHLQTASSERQNYTKEVEGLRQLLSESQEQLEAAKTETQKQSKELALLKMQleqnealmekeqelRQKLTRELE 872
Cdd:pfam15921 728 VAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATE--------------KNKMAGELE 793
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 2024390164 873 EAQSSACSLQAELEKLRLAENAAASDMEEAQHLKERLEKE 912
Cdd:pfam15921 794 VLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQE 833
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
477-966 |
8.91e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.20 E-value: 8.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 477 VSDELRKTQTSYRSLVADAE--KAKGQQQSIAELQAKLLSSETEVKSKLLELDSLKGKLQEASSENTRLLERIKSIEALL 554
Cdd:PRK02224 178 VERVLSDQRGSLDQLKAQIEekEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 555 EagrmrEAEEDRDLQAANEAEMKQLQLRLQEKTDQLLSLEREAAELREAMEQQKTKNNDLREKNWKAVEALTTVEKACEE 634
Cdd:PRK02224 258 A-----EIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 635 KLLAATKAKEE---LAHQLDVLQTRTKEtLLSALPEVTVSQQDYEAWLQEFKEKAVNVLKQHTVMTEPV-DSALKLKEAE 710
Cdd:PRK02224 333 CRVAAQAHNEEaesLREDADDLEERAEE-LREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFgDAPVDLGNAE 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 711 EAQSTLQAECEQYRAILAETEGMLRDLQKSVEEEEQVWKA-KLTVSEEELQKSQL--QLKSLEDMIEKLKAELqstDQLK 787
Cdd:PRK02224 412 DFLEELREERDELREREAELEATLRTARERVEEAEALLEAgKCPECGQPVEGSPHveTIEEDRERVEELEAEL---EDLE 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 788 EYISLLEAQLENHLQTASSERqnytkEVEGLRQLLSESQEQLEAAKTETQKQSKELALLKMQLEQNEALMEKEQELRQKL 867
Cdd:PRK02224 489 EEVEEVEERLERAEDLVEAED-----RIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEA 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 868 TRELEEAQSSAcslqAELEKlRLAENAAAsdmeeaqhlKERLEKEKKLTRDLGQAATKLQELLKVTQDQLAKERETVKKL 947
Cdd:PRK02224 564 EEEAEEAREEV----AELNS-KLAELKER---------IESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERL 629
|
490
....*....|....*....
gi 2024390164 948 KEQLHEKGEEDSSKEGTSV 966
Cdd:PRK02224 630 AEKRERKRELEAEFDEARI 648
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
277-507 |
1.56e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.77 E-value: 1.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 277 TATQKGDPVAVLKRQLEEKEKQLTAEQEDAAAARNKLRELSKELAAEKAKAAASESKLKE---QLVTREREITAVQARMQ 353
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRAleqELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 354 ASYQDHVNETQQLQGKIRALQEQLENGPNTQLARLQQENSILRDAlnqatsQTESKQNAELAKLRQECNKLMKELSEKSE 433
Cdd:COG4942 94 ELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRL------QYLKYLAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024390164 434 VLQQEEQQKKSWEIKAAASEKQIEQLQTSQREMEATLQKRLDEVSDELRKTQTSYRSLVADAEKAKGQQQSIAE 507
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
401-606 |
1.99e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.38 E-value: 1.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 401 QATSQTESKQNAELAKLRQECNKLMKELSEKSEVLQQEEQQKKSWEIKAAASEKQIEQLQTSQREMEATLQKRLDEVSDE 480
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 481 LRktqTSYRSLVADAEKAKGQQQSIAELQAKLLSSETEVKSKLLELDSLKGKLQEASSENTRLLERIKSIEALLEAgRMR 560
Cdd:COG4942 110 LR---ALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAE-LEE 185
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2024390164 561 EAEEDRDLQAANEAEMKQLQLRLQEKTDQLLSLEREAAELREAMEQ 606
Cdd:COG4942 186 ERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
357-957 |
2.29e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 55.12 E-value: 2.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 357 QDHVNETQQLQGKIRALQEQLENGPNTQLARLQQENSILRDALNQATSQTESKQNaelaKLRQECNKLMKELSEKSEVLQ 436
Cdd:pfam15921 91 QRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRN----QLQNTVHELEAAKCLKEDMLE 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 437 QEEQQKKSWEIKAAASEKQIEQLQTSQREMEATLQKRLDEVSD----ELRKTQTS----YRSLVADAEKAKGQQQSIaEL 508
Cdd:pfam15921 167 DSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSmstmHFRSLGSAiskiLRELDTEISYLKGRIFPV-ED 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 509 QAKLLSSETEVKSKLL---ELDSLKGKLQEASSENTRLLERIKSieALLEAGRMREAEEDRDLQAANEAEMKQLQLRLQE 585
Cdd:pfam15921 246 QLEALKSESQNKIELLlqqHQDRIEQLISEHEVEITGLTEKASS--ARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLE 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 586 KTDQLLSlereaAELREAMEQQKTKNNDLREKNWKAVEALTTVEKACEEKLLAATKAKEELAHQLDVLQTRTKETLLSal 665
Cdd:pfam15921 324 STVSQLR-----SELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLE-- 396
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 666 pevtvSQQDYEAWLQEFKekavNVLKQHTVMTEPVDSALKLKEAEEAQSTLQAECE-QYRAILAETEGMLRDLQK--SVE 742
Cdd:pfam15921 397 -----KEQNKRLWDRDTG----NSITIDHLRRELDDRNMEVQRLEALLKAMKSECQgQMERQMAAIQGKNESLEKvsSLT 467
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 743 EEEQVWKAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQLENHLQTASSERQNYTKEVEGLRQLl 822
Cdd:pfam15921 468 AQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNV- 546
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 823 sesQEQLEAAKTETQKQSKELALLKMQLEQNEALMEKEQELRQKLTRELEEAQSSACSLQAELEKLRLAENAAASDMEEA 902
Cdd:pfam15921 547 ---QTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIREL 623
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2024390164 903 QHLKERLEKEK-----------KLTRDLGQAATKLQELLKVTQDQLAKERETVKKLKEQLHEKGEE 957
Cdd:pfam15921 624 EARVSDLELEKvklvnagserlRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEE 689
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
345-945 |
3.02e-07 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 54.70 E-value: 3.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 345 ITAVQARMQASYQD-HVNETQQLQGKIRALQEQL------ENGPNTQLARLQQEN---SILRDALNQATSQTESKQNaEL 414
Cdd:COG5022 748 ATRIQRAIRGRYLRrRYLQALKRIKKIQVIQHGFrlrrlvDYELKWRLFIKLQPLlslLGSRKEYRSYLACIIKLQK-TI 826
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 415 AKLRQECNKLMKELSEKSEVL------------QQEEQQKKSWEIKAAA----SEKQIEQLQTSQREME--ATLQKRLDE 476
Cdd:COG5022 827 KREKKLRETEEVEFSLKAEVLiqkfgrslkakkRFSLLKKETIYLQSAQrvelAERQLQELKIDVKSISslKLVNLELES 906
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 477 VSDELRKTQTSYRSlvadaEKAKGQQQSIAELQAKLLSSETEV-KSKLLELDSLKGKLQEassENTRLLERIKSIEALLE 555
Cdd:COG5022 907 EIIELKKSLSSDLI-----ENLEFKTELIARLKKLLNNIDLEEgPSIEYVKLPELNKLHE---VESKLKETSEEYEDLLK 978
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 556 agrmREAEEDRDLQAANEaEMKQLQLRLQEKTDQLLSLEREAAELREAMEQQKTKNNDLREKnwKAVEALTTVEKACEEK 635
Cdd:COG5022 979 ----KSTILVREGNKANS-ELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKII--SSESTELSILKPLQKL 1051
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 636 LLAATKAKEELAHQLDVLQTRTKETLLSALPEVTvsQQDYEAWLQEFKEKAVNVLKQHTVMTEPVDSALK--------LK 707
Cdd:COG5022 1052 KGLLLLENNQLQARYKALKLRRENSLLDDKQLYQ--LESTENLLKTINVKDLEVTNRNLVKPANVLQFIVaqmiklnlLQ 1129
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 708 EAEEAQSTLQAECEQYRAILAETEGMLRDL--QKSVEEEEQVWKAKLTVSEEELQKSQL---------QLKSLEDMIEKL 776
Cdd:COG5022 1130 EISKFLSQLVNTLEPVFQKLSVLQLELDGLfwEANLEALPSPPPFAALSEKRLYQSALYdeksklsssEVNDLKNELIAL 1209
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 777 ----KAELQSTDQLKEYIS--------LLEAQLENHLQTASSERQNYTKEVegLRQLLSESQEQLEAAKTETQKQSKELA 844
Cdd:COG5022 1210 fskiFSGWPRGDKLKKLISegwvpteySTSLKGFNNLNKKFDTPASMSNEK--LLSLLNSIDNLLSSYKLEEEVLPATIN 1287
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 845 LLK--MQLEQNEALMEKEQELRQKLTRELEEAQSSacslqaELEKLRLAENAAASdmEEAQHLKERLEKEKKLTRDLgqa 922
Cdd:COG5022 1288 SLLqyINVGLFNALRTKASSLRWKSATEVNYNSEE------LDDWCREFEISDVD--EELEELIQAVKVLQLLKDDL--- 1356
|
650 660
....*....|....*....|...
gi 2024390164 923 aTKLQELLKVTQDQLAKERETVK 945
Cdd:COG5022 1357 -NKLDELLDACYSLNPAEIQNLK 1378
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
401-643 |
4.28e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.23 E-value: 4.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 401 QATSQTESKQNAELAKLRQECNKLMKELSEKSEVLQQEEQQKKSWEIKAAASEKQIEQLQTSQREME---ATLQKRLDEV 477
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEaelAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 478 SDELRKTQTSYRSLVADAEKAkGQQQSIAELqaklLSSE--TEVKSKLLELDSLKGKLQEASSENTRLLERIKSIEALLE 555
Cdd:COG4942 96 RAELEAQKEELAELLRALYRL-GRQPPLALL----LSPEdfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 556 AgrmrEAEEDRDLQAANEAEMKQLQLRLQEKTDQLLSLEREAAELREAMEQQKTKNNDLREKNWKAVEALTTVEKACEEK 635
Cdd:COG4942 171 A----ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
....*...
gi 2024390164 636 LLAATKAK 643
Cdd:COG4942 247 GFAALKGK 254
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
434-807 |
4.51e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 54.19 E-value: 4.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 434 VLQQEEQQKKSWEIKAAASEKQIE------QLQTSQREMEATLQKrldeVSDELRKTQTSYR----------SLVADAEK 497
Cdd:COG3096 287 ALELRRELFGARRQLAEEQYRLVEmareleELSARESDLEQDYQA----ASDHLNLVQTALRqqekieryqeDLEELTER 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 498 AKGQQQSIAELQAKLLSSETEVKSKLLELDSLKGKL----QEASSENTRLLERIKSIEALLEAgrmREAEEDRDLQAAN- 572
Cdd:COG3096 363 LEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLadyqQALDVQQTRAIQYQQAVQALEKA---RALCGLPDLTPENa 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 573 EAEMKQLQLRLQEKTDQLLSLEREAAeLREAMEQQKTKNNDLREKNWKAVEALTTVEKACEekLLAATKAKEELAHQLDV 652
Cdd:COG3096 440 EDYLAAFRAKEQQATEEVLELEQKLS-VADAARRQFEKAYELVCKIAGEVERSQAWQTARE--LLRRYRSQQALAQRLQQ 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 653 LQTRtketlLSALPEVTVSQQDYEAWLQEFKEKAvnvlkqhtvmTEPVDSALKLKEAEEAQSTLQAECEQY-------RA 725
Cdd:COG3096 517 LRAQ-----LAELEQRLRQQQNAERLLEEFCQRI----------GQQLDAAEELEELLAELEAQLEELEEQaaeaveqRS 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 726 ILAETEGMLRDLQKSVEEEEQVWKAKLTV-------SEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQLE 798
Cdd:COG3096 582 ELRQQLEQLRARIKELAARAPAWLAAQDAlerlreqSGEALADSQEVTAAMQQLLEREREATVERDELAARKQALESQIE 661
|
....*....
gi 2024390164 799 NHLQTASSE 807
Cdd:COG3096 662 RLSQPGGAE 670
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
289-494 |
5.80e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.77 E-value: 5.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 289 KRQLEEKEKQLTAEQEDAAAARNKLRELSKELaaekakaaasesklkEQLVTREREITAVQArmqasYQDHVNETQQLQG 368
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAEL---------------DALQERREALQRLAE-----YSWDEIDVASAER 668
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 369 KIRALQEQLEN--GPNTQLARLQQENSILRDALNQATSQTEsKQNAELAKLRQECNKLMKELSEKSEVLQQEEQQKKSWE 446
Cdd:COG4913 669 EIAELEAELERldASSDDLAALEEQLEELEAELEELEEELD-ELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLEL 747
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2024390164 447 IKAAASEKQIEQLQTSQREMEATLQKRLDEVSDELRKTQTSYRSLVAD 494
Cdd:COG4913 748 RALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
702-923 |
6.07e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.84 E-value: 6.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 702 SALKLKEAEEAQSTLQAECEQYRAILAETEGMLRDLQKSVEEEEQvwkaKLTVSEEELQKSQLQLKSLEDMIEKLKAELQ 781
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALER----RIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 782 stdQLKEYISLLEAQLENHLQTA-SSERQNYTK-------------EVEGLRQLLSESQEQLEAAKTETQKQSKELALLK 847
Cdd:COG4942 94 ---ELRAELEAQKEELAELLRALyRLGRQPPLAlllspedfldavrRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2024390164 848 MQLEQNEALMEKEQELRQKLTRELEEAQSSACSLQAELEKLRLAENAAASDMEEAQHLKERLEKEKKLTRDLGQAA 923
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
703-931 |
1.16e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 52.33 E-value: 1.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 703 ALKLKEAEEAQSTLQAECEQYRAILAETEGMLRDLQKsveeeeqvwKAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQs 782
Cdd:COG3206 167 ELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQ---------KNGLVDLSEEAKLLLQQLSELESQLAEARAELA- 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 783 tdQLKEYISLLEAQLENHLQTASSERQNytKEVEGLRQLLSESQEQLEAAKTETQKQSKELALLKMQLEQNEALMEKEQE 862
Cdd:COG3206 237 --EAEARLAALRAQLGSGPDALPELLQS--PVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQ 312
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2024390164 863 lrqkltRELEEAQSSACSLQAELEKLRLAENAAASdmeEAQHLKERLEKEKKLTRDLGQAATKLQELLK 931
Cdd:COG3206 313 ------RILASLEAELEALQAREASLQAQLAQLEA---RLAELPELEAELRRLEREVEVARELYESLLQ 372
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
383-953 |
1.32e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 52.53 E-value: 1.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 383 TQLARLQQENSILRDALNQATSQTESKQNAELAKLRQECNKLMKELSEKSEVLQQEEQQKKSWEI----KAAASEKQIEQ 458
Cdd:pfam12128 272 TLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDadieTAAADQEQLPS 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 459 LQTSQREMEATLQKRLDEVSDELRKTQT----SYRSLVADAEKAKGQQQSIAELQAKLLSSETEVKSKLLEL--DSLKGK 532
Cdd:pfam12128 352 WQSELENLEERLKALTGKHQDVTAKYNRrrskIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESElrEQLEAG 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 533 LQEASSENTRLLERIKSIEALLEAGRMreAEEDRDLQAANEAEMKQLQLRLQEKTDQLLSLEREAAELREAMEQQKTKNN 612
Cdd:pfam12128 432 KLEFNEEEYRLKSRLGELKLRLNQATA--TPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALR 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 613 DlreknwkAVEALTTVEKACEEKLLAATKAKEELAHQLDVLQTRTKETLLSAL-----------PEVTVSQQDYEAWLQE 681
Cdd:pfam12128 510 Q-------ASRRLEERQSALDELELQLFPQAGTLLHFLRKEAPDWEQSIGKVIspellhrtdldPEVWDGSVGGELNLYG 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 682 FK--EKAVNVLKQHTVMTEPVDSALKLKEAEEAQSTLQAECEQYraiLAETEGMLRDLQKSVEEEEQVWK-AKLTVSEEE 758
Cdd:pfam12128 583 VKldLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQ---LVQANGELEKASREETFARTALKnARLDLRRLF 659
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 759 LQKSQLQLK---SLEDMIEKLKAELQSTD----QLKEYISLLEAQLENHLQTASSERQNYTKEVEGLRqllSESQEQLEA 831
Cdd:pfam12128 660 DEKQSEKDKknkALAERKDSANERLNSLEaqlkQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGAL---DAQLALLKA 736
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 832 AKTETQKQSK-ELALLKMQLEQNEALMEKEQELRQKLTRELEEaqssacsLQAELEKLRLAENAAASDMEEAQH------ 904
Cdd:pfam12128 737 AIAARRSGAKaELKALETWYKRDLASLGVDPDVIAKLKREIRT-------LERKIERIAVRRQEVLRYFDWYQEtwlqrr 809
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 2024390164 905 --LKERLEKEKKLTRDLGQAATKLQELLKVTQDQLAKERETVKKLKEQLHE 953
Cdd:pfam12128 810 prLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSE 860
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
241-539 |
1.42e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 52.33 E-value: 1.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 241 KTLVSTISSMAFSEGEAQQLIEILT---------ERAGIVQDTWHTATQKGDPVAVLKRQLEEKEK------QLTAEQED 305
Cdd:COG3206 67 DVLLSGLSSLSASDSPLETQIEILKsrpvlervvDKLNLDEDPLGEEASREAAIERLRKNLTVEPVkgsnviEISYTSPD 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 306 AAAARNKLRELSKE-----LAAEKAKAAASESKLKEQLVTREREITAVQARMQASYQDHV-----NETQQLQGKIRALQE 375
Cdd:COG3206 147 PELAAAVANALAEAyleqnLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGlvdlsEEAKLLLQQLSELES 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 376 QLENgPNTQLARLQQENSILRDALNQATSQ-TESKQNAELAKLRQECNKLMKELSEKSEVLQQEEQQkksweIKAAasEK 454
Cdd:COG3206 227 QLAE-ARAELAEAEARLAALRAQLGSGPDAlPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPD-----VIAL--RA 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 455 QIEQLQtsqREMEATLQKRLDEVSDELRKTQTSYRSLVADAEKAKGQQQSIAELQAKLLSSETEVKSKLLELDSLKGKLQ 534
Cdd:COG3206 299 QIAALR---AQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLE 375
|
....*
gi 2024390164 535 EASSE 539
Cdd:COG3206 376 EARLA 380
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
735-953 |
1.58e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 1.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 735 RDLQKSVEEEEQVWKAK-LTVSEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQLENHLQTASSERQNYTK 813
Cdd:TIGR02169 214 QALLKEKREYEGYELLKeKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVK 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 814 --------EVEGLRQLLSESQEQLEAAKTETQKQSKELALLKMQLEQNEALMEKEQELRQKLTRELEEAQSSACSLQAEL 885
Cdd:TIGR02169 294 ekigeleaEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAEL 373
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2024390164 886 EKLrlaENAAASDMEEAQHLKERLEKEKKLTRDLGQAATKLQELLKVTQDQLAKERETVKKLKEQLHE 953
Cdd:TIGR02169 374 EEV---DKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINE 438
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
286-957 |
1.95e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.90 E-value: 1.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 286 AVLKRQLEEKEKQLTAEQEDAAAARNKLRELSKELAAEKAKAAASESKLKEQLVTREREITAVQARMQASyqdhvNETQQ 365
Cdd:pfam02463 296 EELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQ-----EKLEQ 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 366 LQGKIRALQEQLENGPNTQLARLQQENSILRDALNQATSQTESKQNAELAKLRqecnkLMKELSEKSEVLQQEEQQKKSW 445
Cdd:pfam02463 371 LEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKE-----EKKEELEILEEEEESIELKQGK 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 446 EIKAAASEKQIEQLQTSQREMEATLQKRLDEVSDELRKTQTSYRSLVADAEKAKGQQQSIAELQAKLLSSETEVKSKLLE 525
Cdd:pfam02463 446 LTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRII 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 526 LDSLKGKLQEAssentrlleriksIEALLEAGRMREAEEDRDLQAANEAEMKQLQLRLQEKTDQLLSLEREAAELREAME 605
Cdd:pfam02463 526 SAHGRLGDLGV-------------AVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLK 592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 606 QQKTKNNDLREKNWKAVEALTTVEkacEEKLLAATKAKEELAHQLDVLQTRTKETLLSALPEVTVSQqdyeaWLQEFKEK 685
Cdd:pfam02463 593 SIAVLEIDPILNLAQLDKATLEAD---EDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEE-----GLAEKSEV 664
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 686 AVNVLKQHTVMTEPVDSALKLKEAEEAQSTLQAECEQYRAILAETEGMLRDLQKSVEEEEQVWKAKLTVSEEELQKSQLQ 765
Cdd:pfam02463 665 KASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQK 744
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 766 LKSLEDMIEKLKAELQSTDQLKEYISLLEAQLE---NHLQTASSERQNYTKEVEGLRQLLSESQEQLEAAKTETQKQSKE 842
Cdd:pfam02463 745 IDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAeerEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLI 824
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 843 LALLKMQLEQNEALmEKEQELRQKLTRELEEAQSSACSLQAELEKLRLaENAAASDMEEAQHLKERLEKEKKLTRDLGQA 922
Cdd:pfam02463 825 EQEEKIKEEELEEL-ALELKEEQKLEKLAEEELERLEEEITKEELLQE-LLLKEEELEEQKLKDELESKEEKEKEEKKEL 902
|
650 660 670
....*....|....*....|....*....|....*
gi 2024390164 923 ATKLQELLKVTQDQLAKERETVKKLKEQLHEKGEE 957
Cdd:pfam02463 903 EEESQKLNLLEEKENEIEERIKEEAEILLKYEEEP 937
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
446-962 |
1.98e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.07 E-value: 1.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 446 EIKAAASEKQIEQLQTSQREMEATLQKrlDEVSDElrktqtSYRSLVADAEKAKGQQQSIAELQAKllssETEVKSKLLE 525
Cdd:PTZ00121 1059 KAEAKAHVGQDEGLKPSYKDFDFDAKE--DNRADE------ATEEAFGKAEEAKKTETGKAEEARK----AEEAKKKAED 1126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 526 LDslkgKLQEA-SSENTRLLERIKSIEALLEAGRMREAEEDRDLQAANEAEmkqlQLRLQEKTDQLLSLeREAAELREAM 604
Cdd:PTZ00121 1127 AR----KAEEArKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAE----DAKKAEAARKAEEV-RKAEELRKAE 1197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 605 EQQKTKNNDLREKNWKAVEalttVEKACEEKLLAATKAKEELAHQLDVLQTRTKEtllsalpevtvsQQDYEAWLQEFKE 684
Cdd:PTZ00121 1198 DARKAEAARKAEEERKAEE----ARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEE------------RNNEEIRKFEEAR 1261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 685 KAVNVLKQHTVMTEPVDSALKLKEAEEAQSTLQAEceqyraiLAETEGMLRDLQKSVEEEEQVWKAKLTVSEEELQKSQL 764
Cdd:PTZ00121 1262 MAHFARRQAAIKAEEARKADELKKAEEKKKADEAK-------KAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAA 1334
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 765 QLKSLEdmiEKLKAELQSTDQLKEYISLLEAqlENHLQTASSERQNYTKEVEGLRQLLSESQEQLEAAKT--ETQKQSKE 842
Cdd:PTZ00121 1335 KKKAEE---AKKAAEAAKAEAEAAADEAEAA--EEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKaeEDKKKADE 1409
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 843 LALLKMQLEQNEALMEKEQELRQ--KLTRELEEAQsSACSLQAELEKLRLAENAA--ASDMEEAQHLKERLEKEKKltrd 918
Cdd:PTZ00121 1410 LKKAAAAKKKADEAKKKAEEKKKadEAKKKAEEAK-KADEAKKKAEEAKKAEEAKkkAEEAKKADEAKKKAEEAKK---- 1484
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 2024390164 919 lGQAATKLQELLKVTQDQLAKERETVKKLKEQlhEKGEEDSSKE 962
Cdd:PTZ00121 1485 -ADEAKKKAEEAKKKADEAKKAAEAKKKADEA--KKAEEAKKAD 1525
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
283-798 |
2.59e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.58 E-value: 2.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 283 DPVAVLKRqLEEKEKQLTAEQEDAaaarNKLRELSKELAAEKAKAAASESKLKEQLVTREREITAVQARMQASYQdhvnE 362
Cdd:PRK02224 203 DLHERLNG-LESELAELDEEIERY----EEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETER----E 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 363 TQQLQGKIRALQEQLEngpntqlaRLQQENSILRD--ALNQATSQTESKQNAELAKLRQECNKlmkELSEKSEVLQQEEQ 440
Cdd:PRK02224 274 REELAEEVRDLRERLE--------ELEEERDDLLAeaGLDDADAEAVEARREELEDRDEELRD---RLEECRVAAQAHNE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 441 QKKSWEIKAAASEKQIEQLQTSQREMEATLQKRLDEVSD------ELRKTQTSYRSLVADAEKAKGQQQSIAELqakLLS 514
Cdd:PRK02224 343 EAESLREDADDLEERAEELREEAAELESELEEAREAVEDrreeieELEEEIEELRERFGDAPVDLGNAEDFLEE---LRE 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 515 SETEVKSKLLELDSLKGKLQEASSENTRLLERIKSIEA---LLEAGRMREAEEDRDLQAANEAEMKQLQLR--------- 582
Cdd:PRK02224 420 ERDELREREAELEATLRTARERVEEAEALLEAGKCPECgqpVEGSPHVETIEEDRERVEELEAELEDLEEEveeveerle 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 583 ----LQEKTDQLLSLEREAAELREAMEQQKTKNNDLREKNWKAVEALTTVEKACEEKLLAATKAKEELAHQLDVL----- 653
Cdd:PRK02224 500 raedLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVaelns 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 654 -QTRTKETL--LSALPEVTVSQQDYEAWLQEFKEKAVNVLKQHTVMTEpvdsalKLKEAEEAQSTLQAECEQYRailaeT 730
Cdd:PRK02224 580 kLAELKERIesLERIRTLLAAIADAEDEIERLREKREALAELNDERRE------RLAEKRERKRELEAEFDEAR-----I 648
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2024390164 731 EGMLRDLQKSVEEEEQVwkakltvsEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQLE 798
Cdd:PRK02224 649 EEAREDKERAEEYLEQV--------EEKLDELREERDDLQAEIGAVENELEELEELRERREALENRVE 708
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
335-963 |
2.86e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.51 E-value: 2.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 335 KEQLVTREREITAVQARMQASYQDhVNETQQLQGKIRALQEQLENGPNTQLARLQQENSILRDALNQATSQTESKQnaEL 414
Cdd:TIGR00618 186 FAKKKSLHGKAELLTLRSQLLTLC-TPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQ--LL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 415 AKLRQECNKLMKELSEKSEvlQQEEQQKKSWEIKAAASEKQIEQLQTSQREMEATLQKRLDEVSDELRKtqtsYRSLVAD 494
Cdd:TIGR00618 263 KQLRARIEELRAQEAVLEE--TQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMK----RAAHVKQ 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 495 AEKAKGQQQSIAELQAKLLSSETEVKSKLLELD------SLKGKLQEASSENTRLLERIKSIEALLEAGRMREAEEDRDL 568
Cdd:TIGR00618 337 QSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREiscqqhTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRT 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 569 QAANEAEMKQLQLRLQEKTDQLLSLEREAAELREAMEQqkTKNNDLREKNWKAVEALTTVEKACEEKLLAATKAKEELAH 648
Cdd:TIGR00618 417 SAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCE--KLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLA 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 649 QLDVLQTRTKETLLSAL-PEVTVSQQDYEAWLQEFKEKAVNVLKQHTVMTEPVDSALKL---------KEAEEAQSTLQA 718
Cdd:TIGR00618 495 RLLELQEEPCPLCGSCIhPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSerkqraslkEQMQEIQQSFSI 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 719 ECEQYRAILAETEGMLR---DLQKSVEEEEQVWKAKLTVSEEELQKSQLQLKSLEdmiekLKAELQstdQLKEYISLLEA 795
Cdd:TIGR00618 575 LTQCDNRSKEDIPNLQNitvRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQD-----VRLHLQ---QCSQELALKLT 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 796 QLENHLQTASSERQnyTKEVEGLRQLLSESQEQLEAAKTETQKQSKELALLKMQLEQNEALMEKEQELRQKLTRELEEAQ 875
Cdd:TIGR00618 647 ALHALQLTLTQERV--REHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIE 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 876 SSACSLQAELEKLRLAENAAASDMEEA-----QHLKERLEKEKKLTRDLGQAATKLQELLKVTQDQLAKERETVKKLKEQ 950
Cdd:TIGR00618 725 NASSSLGSDLAAREDALNQSLKELMHQartvlKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTL 804
|
650
....*....|...
gi 2024390164 951 LHEKGEEDSSKEG 963
Cdd:TIGR00618 805 EAEIGQEIPSDED 817
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
453-816 |
3.61e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.22 E-value: 3.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 453 EKQIEQLQTSQREMEaTLQKRLDEVSDELRKTQTSYrslvADAEKAKGQQQSIAELQAKLLSSEteVKSKLLELDSLKGK 532
Cdd:TIGR02169 173 EKALEELEEVEENIE-RLDLIIDEKRQQLERLRRER----EKAERYQALLKEKREYEGYELLKE--KEALERQKEAIERQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 533 LQEASSENTRLLERIKSIEALLEAGRMREAEEDRDLQAANEAEMKQLQLRLQEKTDQLLSLEREAAELREAMEQQKTKNN 612
Cdd:TIGR02169 246 LASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLA 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 613 DLREKNWKAVEALTTVEKACEEKLLAATKAKEELAHQLDVLqtrtkETLLSALPEVTVSQQDYEAWLQEFKEKAVNVLKQ 692
Cdd:TIGR02169 326 KLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEL-----EDLRAELEEVDKEFAETRDELKDYREKLEKLKRE 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 693 HTVMTEPVDSAL-KLKEAEEAQSTLQAECEQYRAILAETEGMLRDLQKSVEEEEQvwkakltvseeELQKSQLQLKSLED 771
Cdd:TIGR02169 401 INELKRELDRLQeELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW-----------KLEQLAADLSKYEQ 469
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 2024390164 772 MIEKLKAELQSTD----QLKEYISLLEAQlenhlQTASSERQNYTKEVE 816
Cdd:TIGR02169 470 ELYDLKEEYDRVEkelsKLQRELAEAEAQ-----ARASEERVRGGRAVE 513
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
241-949 |
5.43e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 50.74 E-value: 5.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 241 KTLVSTISSMAFSEGEAQQLIEILTERAGIVQDTWHTATQKGDPVAVLKRQLEEKEKQLTAEQEDAAAARNKLRELSKEL 320
Cdd:pfam02463 272 KENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKR 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 321 AAEKAKAAASESKLKEQLVTREREITAvqarmQASYQDHVNETQQLQGKIRALQEQLENGPNTQLARLQQENSILRDALN 400
Cdd:pfam02463 352 EAEEEEEEELEKLQEKLEQLEEELLAK-----KKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKK 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 401 QATSQTESKQ------NAELAKLRQECNKLMKELSEKSEVLQQEEQQKKswEIKAAASEKQIEQLQTSQREMEATLQ--- 471
Cdd:pfam02463 427 EELEILEEEEesielkQGKLTEEKEELEKQELKLLKDELELKKSEDLLK--ETQLVKLQEQLELLLSRQKLEERSQKesk 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 472 -KRLDEVSDELRKTQTSYRSLVADAEKAKGQQQSIAELQAKLLSSETEVKSKLLELDsLKGKLQEASSENTRLLERIKSI 550
Cdd:pfam02463 505 aRSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVE-ERQKLVRALTELPLGARKLRLL 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 551 EALLEAGRMREAEEDRDLQAANEAEMKQLQLRLQEKTDQLLSLEREAAELREAMEQQKTKNNDLREKNWKAVEALTTVEK 630
Cdd:pfam02463 584 IPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSE 663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 631 ACEEKLLAATKAKEELAHQLDVLQTRTKETLLSALPEVTVSQQDYEAWLQEFKEKAVNVLkqhTVMTEPVDSALKLKEAE 710
Cdd:pfam02463 664 VKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELL---ADRVQEAQDKINEELKL 740
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 711 EAQSTLQAECEQYRAILAETEGMLRDLQKSVEEEEQVWKAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEyI 790
Cdd:pfam02463 741 LKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLE-E 819
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 791 SLLEAQLENHLQTASSERQNYTKEVEGLRQLLSESQEQLEAAKTETQKQSKELALLKMQLEQNEALMEKEQELrqkltRE 870
Cdd:pfam02463 820 EQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKE-----EK 894
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2024390164 871 LEEAQSSACSLQAELEKLRLAENAAASDMEEAQHLKERLEKEKKLTRDLGQAATKLQELLKVTQDQLAKERETVKKLKE 949
Cdd:pfam02463 895 EKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELG 973
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
360-809 |
7.74e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.77 E-value: 7.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 360 VNETQQLQGKIRALQEQLENGpNTQLARLQQENSILRDALNQATSQtesKQNAELAKLRQECNKLMKELSEKSEVLQQEE 439
Cdd:COG4717 80 LKEAEEKEEEYAELQEELEEL-EEELEELEAELEELREELEKLEKL---LQLLPLYQELEALEAELAELPERLEELEERL 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 440 QQKKSWEIKAAASEKQIEQLqtsQREMEATLQKRLDEVSDELRKTQTSYRSLVADAEKAkgqQQSIAELQAKLLSSETEV 519
Cdd:COG4717 156 EELRELEEELEELEAELAEL---QEELEELLEQLSLATEEELQDLAEELEELQQRLAEL---EEELEEAQEELEELEEEL 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 520 KSklLELDSLKGKLQEASSENTRLLERIKSIEALLEAGRMREAEEDRD---------LQAANEAEMKQLQLRLQEKTDQL 590
Cdd:COG4717 230 EQ--LENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIagvlflvlgLLALLFLLLAREKASLGKEAEEL 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 591 LSLEREAAELREAMEQQKTKNNDLREKNWKAVEALTTVEKACEEKLLAATKAKEELahQLDVLQTRTKETLLSALPEvtv 670
Cdd:COG4717 308 QALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEEL--QLEELEQEIAALLAEAGVE--- 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 671 SQQDYEAWLQEFKE--KAVNVLKQHTVMTEPVDSALKLKEAEEAQSTLQAECEQYRAILAETEGMLRDLQKSVEEEEQvw 748
Cdd:COG4717 383 DEEELRAALEQAEEyqELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEA-- 460
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2024390164 749 kakltvsEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQLENHLQTASSERQ 809
Cdd:COG4717 461 -------ELEQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERL 514
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
334-917 |
1.12e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 49.40 E-value: 1.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 334 LKEQLVTREREITAVQARMQASYQDHVNETQQLQGKIRALQEQLENgpntqLARLQQENSILRDALNQATSQTESK---Q 410
Cdd:pfam01576 62 MRARLAARKQELEEILHELESRLEEEEERSQQLQNEKKKMQQHIQD-----LEEQLDEEEAARQKLQLEKVTTEAKikkL 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 411 NAELAKLRQECNKLMKELSEKSEVLQQEEQQKKSWEIKAaaseKQIEQLQTSQREMEATLQKRLDEVSDELRKTQTSYRS 490
Cdd:pfam01576 137 EEDILLLEDQNSKLSKERKLLEERISEFTSNLAEEEEKA----KSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRK 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 491 LVADAEKAkgqQQSIAELQAKLLSSETEVKSKLLELDSLKGKLQEASSENTRLLERIKSIEALL----------EAGRMR 560
Cdd:pfam01576 213 LEGESTDL---QEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQIselqedleseRAARNK 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 561 EAEEDRDLQAANEAEMKQLQLRLQEKTDQL---LSLEREAAELREAMEQQKTKNN----DLREKNWKAVEALTTVEKACE 633
Cdd:pfam01576 290 AEKQRRDLGEELEALKTELEDTLDTTAAQQelrSKREQEVTELKKALEEETRSHEaqlqEMRQKHTQALEELTEQLEQAK 369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 634 EKLLAATKAKEELAHQLDVLQTRTKeTLLSALPEVTVSQQDYEAWLQEFKEKAVNVLKQHTvmtepvdsalklkEAEEAQ 713
Cdd:pfam01576 370 RNKANLEKAKQALESENAELQAELR-TLQQAKQDSEHKRKKLEGQLQELQARLSESERQRA-------------ELAEKL 435
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 714 STLQAECEQYRAILAETEGMLRDLQKSVEE-EEQVWKAKLTVSEEELQKSQL--QLKSLED----MIEKLKAELQSTDQL 786
Cdd:pfam01576 436 SKLQSELESVSSLLNEAEGKNIKLSKDVSSlESQLQDTQELLQEETRQKLNLstRLRQLEDernsLQEQLEEEEEAKRNV 515
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 787 KEYISLLEAQLEN----------HLQTASSERQNYTKEVEGLRQLLSESQEQLEAAKTETQKQSKELALLKMQLEQNEAL 856
Cdd:pfam01576 516 ERQLSTLQAQLSDmkkkleedagTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQL 595
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2024390164 857 MEKEQELRQKLTRELEEAQSSACSLQAELEKL----RLAENAAAS---DMEEAQHLKERLEKEKKLTR 917
Cdd:pfam01576 596 VSNLEKKQKKFDQMLAEEKAISARYAEERDRAeaeaREKETRALSlarALEEALEAKEELERTNKQLR 663
|
|
| KpsE |
COG3524 |
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis]; |
450-608 |
1.49e-05 |
|
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442746 [Multi-domain] Cd Length: 370 Bit Score: 48.31 E-value: 1.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 450 AASEKQIEQL-QTSQREMEATLQKRLDEVSDELRKTQ---TSYRS--LVADAEK-AKGQQQSIAELQAKLLSSETEvksk 522
Cdd:COG3524 161 AESEELVNQLsERAREDAVRFAEEEVERAEERLRDARealLAFRNrnGILDPEAtAEALLQLIATLEGQLAELEAE---- 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 523 lleLDSLKGKLQEASSENTRLLERIKSIEALLEA--GRMREAEEDRDLqAANEAEMKQLQLRLQEKTDQLLS--LEREAA 598
Cdd:COG3524 237 ---LAALRSYLSPNSPQVRQLRRRIAALEKQIAAerARLTGASGGDSL-ASLLAEYERLELEREFAEKAYTSalAALEQA 312
|
170
....*....|
gi 2024390164 599 ELrEAMEQQK 608
Cdd:COG3524 313 RI-EAARQQR 321
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
758-919 |
1.77e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 47.23 E-value: 1.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 758 ELQKSQLQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQLENHLQTASSERQNYTKEVEGLRQLLSESQEQLEAAKT--E 835
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNnkE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 836 TQKQSKELALLKMQLEQNEALMEKEQELRQKLTRELEEAQSSACSLQAELEKLR--LAENAAASDMEEAQHLKERLEKEK 913
Cdd:COG1579 91 YEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKaeLDEELAELEAELEELEAEREELAA 170
|
....*.
gi 2024390164 914 KLTRDL 919
Cdd:COG1579 171 KIPPEL 176
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
312-539 |
2.30e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 48.09 E-value: 2.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 312 KLRELSKELAAEKAKAAASESKLKEQ--LVTREREITAV-QARMQASYQDHVNETQQLQGKIRALQEQLEngpNTQLARL 388
Cdd:PHA02562 175 KIRELNQQIQTLDMKIDHIQQQIKTYnkNIEEQRKKNGEnIARKQNKYDELVEEAKTIKAEIEELTDELL---NLVMDIE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 389 QQENSI--LRDALNQATSQTESKQN-AELAKLRQECNKLMKELSEKSEVLQQEEQQKKSWEIKAAASEKQIEQLQtsQRE 465
Cdd:PHA02562 252 DPSAALnkLNTAAAKIKSKIEQFQKvIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELE--EIM 329
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024390164 466 ME-ATLQKRLDEVSDELRKTQTSYRSLVADAEKAKgqqQSIAELQAKLLSSETEVKSKLLELDSLKGKLQEASSE 539
Cdd:PHA02562 330 DEfNEQSKKLLELKNKISTNKQSLITLVDKAKKVK---AAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE 401
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
367-610 |
2.34e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.20 E-value: 2.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 367 QGKIRALQEQLENGPNTQLARLQQENSILR-DALNQATSQTESKQNAELAKL---RQECNKLMKELSE--KSEVLQQEEQ 440
Cdd:pfam17380 332 QAAIYAEQERMAMERERELERIRQEERKRElERIRQEEIAMEISRMRELERLqmeRQQKNERVRQELEaaRKVKILEEER 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 441 QKKSWEIKAAASEKQIEQLQTSQREMEATLQKRLDEVS-------------DELRKTQTSYRSLVADAEKAKGQQQSIAE 507
Cdd:pfam17380 412 QRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMErvrleeqerqqqvERLRQQEEERKRKKLELEKEKRDRKRAEE 491
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 508 LQAKLLSSETEVKSKLLELDSLKGKLQEASSENTRlleriksiEALLEAGRMREAEEDRDLQAANEaEMKQLQLRLQEKT 587
Cdd:pfam17380 492 QRRKILEKELEERKQAMIEEERKRKLLEKEMEERQ--------KAIYEEERRREAEEERRKQQEME-ERRRIQEQMRKAT 562
|
250 260
....*....|....*....|....*.
gi 2024390164 588 DQ---LLSLEREAAELREAMEQQKTK 610
Cdd:pfam17380 563 EErsrLEAMEREREMMRQIVESEKAR 588
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
383-950 |
2.48e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 48.28 E-value: 2.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 383 TQLARLQQENSILRDALNQATSQTESKQNA-------ELAK---LRQECNKLMKELSEKSEVLQQEEQQKK------SWE 446
Cdd:pfam10174 3 AQLRDLQRENELLRRELDIKESKLGSSMNSiktfwspELKKeraLRKEEAARISVLKEQYRVTQEENQHLQltiqalQDE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 447 IKAAASEKQIEQLQTSQREMEATLQKRLDEVSDE-LRKTQTSYRSLVADAE---KAKGQQQSIAELQAKLLSSETEVKSK 522
Cdd:pfam10174 83 LRAQRDLNQLLQQDFTTSPVDGEDKFSTPELTEEnFRRLQSEHERQAKELFllrKTLEEMELRIETQKQTLGARDESIKK 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 523 LLELDSLKGKLQEASSENTRLLERIKSIEALL------------EAGRMREAEEDRDLQAANEAEMKQLQLRLQEKTDQL 590
Cdd:pfam10174 163 LLEMLQSKGLPKKSGEEDWERTRRIAEAEMQLghlevlldqkekENIHLREELHRRNQLQPDPAKTKALQTVIEMKDTKI 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 591 LSLEREAAELREAMEQQKTK---NNDLREKNWKAVEALTTVEKACEEKLLAATKAKEELAHQLDVLQTRTkETL------ 661
Cdd:pfam10174 243 SSLERNIRDLEDEVQMLKTNgllHTEDREEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESELLALQTKL-ETLtnqnsd 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 662 ----LSALPEVTVSQQDYEAWLQ-EFKEKAVNVLKQHTVMTEPVDsalKLKEAEEAQSTLQAECEQYRAILAETEGMLRD 736
Cdd:pfam10174 322 ckqhIEVLKESLTAKEQRAAILQtEVDALRLRLEEKESFLNKKTK---QLQDLTEEKSTLAGEIRDLKDMLDVKERKINV 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 737 LQKSVEEeeqvwkakltvSEEELQKSQLQLKSLEDMIEKLKAELQSTDQ----LKEYISLLEAQLENHLQTASSERQNYT 812
Cdd:pfam10174 399 LQKKIEN-----------LQEQLRDKDKQLAGLKERVKSLQTDSSNTDTalttLEEALSEKERIIERLKEQREREDRERL 467
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 813 KEVEGLRQLLSESQEQLEAAKTETQKQSKELALLKMQLEQNEALMEKEQELRQKLTRELEEAQSSACSLQAELEKLRLAE 892
Cdd:pfam10174 468 EELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAHNAE 547
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 2024390164 893 NAAASDMEEAQHLKErLEKEKKLTRD-LGQAATKLQELLKVTqdqlaKERETVKKLKEQ 950
Cdd:pfam10174 548 EAVRTNPEINDRIRL-LEQEVARYKEeSGKAQAEVERLLGIL-----REVENEKNDKDK 600
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
752-950 |
2.67e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 2.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 752 LTVSEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQLENHLQTASSERQNYTKEVEGLRQLLSESQEQLEA 831
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 832 AKTETQKQSKELA-----LLKMQLEQNEALMEKEQELRQKLTRE------LEEAQSSACSLQAELEKLRLAENAAASDME 900
Cdd:COG4942 95 LRAELEAQKEELAellraLYRLGRQPPLALLLSPEDFLDAVRRLqylkylAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2024390164 901 EAQHLKERLEKEKKltrDLGQAATKLQELLKVTQDQLAKERETVKKLKEQ 950
Cdd:COG4942 175 ELEALLAELEEERA---ALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
361-582 |
2.79e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 2.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 361 NETQQLQGKIRALQEQLENgPNTQLARLQQENSILRDALNQATSQTeSKQNAELAKLRQECNKLMKELSEKSevlQQEEQ 440
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAE-LEKELAALKKEEKALLKQLAALERRI-AALARRIRALEQELAALEAELAELE---KEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 441 QKKSWEIKAAASEKQIEQLQTSQREMEATLQKRLDEVSDELRKT---QTSYRSLVADAEKAKGQQQSIAELQAKLLSSET 517
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLqylKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024390164 518 EVKSKLLELDSLKGKLQEASSENTRLLERIKSIEALLEAGRMREAEEDRDLQAANEAEMKQLQLR 582
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
679-951 |
3.88e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 47.61 E-value: 3.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 679 LQEFKEKAVNVLKQHTVMtEPVD-----SALKLKEAEEAQSTLQAECEQYRAILaETEGMLRDLQKSVEEEEqvWKAKLT 753
Cdd:PRK05771 14 LKSYKDEVLEALHELGVV-HIEDlkeelSNERLRKLRSLLTKLSEALDKLRSYL-PKLNPLREEKKKVSVKS--LEELIK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 754 VSEEELQKSQLQLKSLEDMIEKLKAELQSTDQLK---EYISLLEAQLENHLQTASSERQNYTKEVEGLRQLLSES-QEQL 829
Cdd:PRK05771 90 DVEEELEKIEKEIKELEEEISELENEIKELEQEIerlEPWGNFDLDLSLLLGFKYVSVFVGTVPEDKLEELKLESdVENV 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 830 EAAKTETQK----------QSKELA--LLKMQLEQNEALMEKE-QELRQKLTRELEEaqssacsLQAELEKLRlaenaaa 896
Cdd:PRK05771 170 EYISTDKGYvyvvvvvlkeLSDEVEeeLKKLGFERLELEEEGTpSELIREIKEELEE-------IEKERESLL------- 235
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2024390164 897 sdmEEAQHLKERLEKEKKLTRDLGQAATKLQELLkvtqDQLAKERET-----------VKKLKEQL 951
Cdd:PRK05771 236 ---EELKELAKKYLEELLALYEYLEIELERAEAL----SKFLKTDKTfaiegwvpedrVKKLKELI 294
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
290-685 |
4.20e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.45 E-value: 4.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 290 RQLEEKEKQLTAEQEDAAAARNKLRELSKELAAEKAKAAASESKLKE-QLVTREREITAVQARMQASYQDHVNETQQLQG 368
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKlEKLLQLLPLYQELEALEAELAELPERLEELEE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 369 KIRALQEQLENGPN--TQLARLQQENSILRDALNQATSQTESKQNAELAKLRQECNKLMKELSEKSEVLQQEEQQKKSWE 446
Cdd:COG4717 154 RLEELRELEEELEEleAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLE 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 447 IK--AAASEKQIEQLQTSQR------EMEATLQKRLDEVSDELRKTQTSYRSLVADAEKAKGQQQSIAELQAKLLSSETE 518
Cdd:COG4717 234 NEleAAALEERLKEARLLLLiaaallALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPAL 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 519 VKSKLLELDSLKGKLQ-EASSENTRLLERIKSIEALLEAGRMREAEEDRDLQAANEAEMKQLQLRLQEKT-DQLLSLERE 596
Cdd:COG4717 314 EELEEEELEELLAALGlPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDeEELRAALEQ 393
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 597 AAELREAMEQQKTKNNDLREKNWKAVEALTTVEKA-CEEKLLAATKAKEELAHQLDVLQTRTKEtlLSALPEVTVSQQDY 675
Cdd:COG4717 394 AEEYQELKEELEELEEQLEELLGELEELLEALDEEeLEEELEELEEELEELEEELEELREELAE--LEAELEQLEEDGEL 471
|
410
....*....|
gi 2024390164 676 EAWLQEFKEK 685
Cdd:COG4717 472 AELLQELEEL 481
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
562-888 |
4.25e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 4.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 562 AEEDRDLQAANE------AEMKQLQLRLQEKTDQLLSLEREAAELREAMEQQKTKNNDLREKNWKAVEALTTVEKACEEK 635
Cdd:TIGR02169 166 AEFDRKKEKALEeleeveENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 636 LLAATKAKEELAHQLDVLQTR--TKETLLSALPEVTVSQQDYEAwlQEFKEKavnvLKQHTVMTEPVDSALKLK--EAEE 711
Cdd:TIGR02169 246 LASLEEELEKLTEEISELEKRleEIEQLLEELNKKIKDLGEEEQ--LRVKEK----IGELEAEIASLERSIAEKerELED 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 712 AQSTLQAECEQYRAILAETEGMLRDLqksveEEEQVWKAKLTVSEEELQKSQLQLKS-LEDMIEKLKAELQSTDQLKEYI 790
Cdd:TIGR02169 320 AEERLAKLEAEIDKLLAEIEELEREI-----EEERKRRDKLTEEYAELKEELEDLRAeLEEVDKEFAETRDELKDYREKL 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 791 SLLEAQLENHLQTAS---SERQNYTKEVEGLRQLLSESQEQLEAAKTETQKQSKELALLKMQLEQNEALMEKEQELRQKL 867
Cdd:TIGR02169 395 EKLKREINELKRELDrlqEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDL 474
|
330 340
....*....|....*....|.
gi 2024390164 868 TRELEEAQSSACSLQAELEKL 888
Cdd:TIGR02169 475 KEEYDRVEKELSKLQRELAEA 495
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
288-953 |
6.65e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 46.96 E-value: 6.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 288 LKRQLEEKEKQLTAEQE-----------------DAAAARNKLRELSKELAAEKAKAAASESKLKEQLVTREREITAVQA 350
Cdd:TIGR00606 222 IRDQITSKEAQLESSREivksyeneldplknrlkEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 351 RMQASYQDHVNETQQLQGKIRALQEQLENGpNTQLARLQQENSILRDALNQATSQTESKQNAELAK-LRQECNKLMKELS 429
Cdd:TIGR00606 302 QLNDLYHNHQRTVREKERELVDCQRELEKL-NKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARdSLIQSLATRLELD 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 430 EKSEVLQQEEQQKKSWEIKAAASE---KQIEQLQTSQREMEATLQKRLDEVSDE--------------LRKTQTSYRSLV 492
Cdd:TIGR00606 381 GFERGPFSERQIKNFHTLVIERQEdeaKTAAQLCADLQSKERLKQEQADEIRDEkkglgrtielkkeiLEKKQEELKFVI 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 493 ADAEKAKGQQQSIAELQAKLLSSETE-------------------VKSKLLELDSLKGKLQEASSENTRLLERIKSIEAL 553
Cdd:TIGR00606 461 KELQQLEGSSDRILELDQELRKAERElskaeknsltetlkkevksLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEML 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 554 LEAgRMREAEEDRDLQAANEAEM----------KQLQLRLQEKTDQLLSLEREAAELREAMEQQKTKNNDLREKNWKAVE 623
Cdd:TIGR00606 541 TKD-KMDKDEQIRKIKSRHSDELtsllgyfpnkKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEE 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 624 ALTTVE----KAC------------EEKLLAATKAKEELAHQLDVLQTRTKETLLSALPEVTVSQQDY--EAWLQEFKEK 685
Cdd:TIGR00606 620 QLSSYEdklfDVCgsqdeesdlerlKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFqtEAELQEFISD 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 686 AVNVLKQHTVMTEPVDSALKLKEAEEAQSTLQAECEQYRAILAETE-GMLRDLQKSVEEEEQVWKAKLTVSEEEL----- 759
Cdd:TIGR00606 700 LQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEiPELRNKLQKVNRDIQRLKNDIEEQETLLgtimp 779
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 760 ---------------QKSQLQLKSLEDMIEKLKAELQSTDQLKEYislleAQLENHLQTASSERQNYTKEVEGLRQLLSE 824
Cdd:TIGR00606 780 eeesakvcltdvtimERFQMELKDVERKIAQQAAKLQGSDLDRTV-----QQVNQEKQEKQHELDTVVSKIELNRKLIQD 854
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 825 SQEQLEAAKTETQKQSKELALLKMQLEQNEALMEKEQELR---QKLTRELEEAQSSACSLQAELEKLRLAENAAASDMEE 901
Cdd:TIGR00606 855 QQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELStevQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKET 934
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*.
gi 2024390164 902 AQHLKErlEKEKKLTRDLGQAATKLQELLKVTQD----QLAKERETVKKLKEQLHE 953
Cdd:TIGR00606 935 SNKKAQ--DKVNDIKEKVKNIHGYMKDIENKIQDgkddYLKQKETELNTVNAQLEE 988
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
410-659 |
8.79e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 8.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 410 QNAELAKLRQECNKLMKELSEKSEVLQQEEQQKKSWEIKAAASEKQIEQLQTSQREmeatLQKRLDEVSDELRKTQTSYR 489
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRA----LEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 490 SLVADAEKakgQQQSIAELQAKLLSSETEVKSKLLeldslkgKLQEASSENTRLLERIKSIealleagrmreAEEDRDLQ 569
Cdd:COG4942 94 ELRAELEA---QKEELAELLRALYRLGRQPPLALL-------LSPEDFLDAVRRLQYLKYL-----------APARREQA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 570 AANEAEMKQLQLRLQEKTDQLLSLEREAAELreamEQQKTKNNDLREKNWKAVEALTTVEKACEEKLLAATKAKEELAHQ 649
Cdd:COG4942 153 EELRADLAELAALRAELEAERAELEALLAEL----EEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
250
....*....|
gi 2024390164 650 LDVLQTRTKE 659
Cdd:COG4942 229 IARLEAEAAA 238
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
253-473 |
9.85e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 9.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 253 SEGEAQQLIEILTERAGIVQDTWHTATQKGDPVAVLKRQLEEKEKQLTAEQEDAAAARNKLRELSKELAAEKAKAAASES 332
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 333 KLKEQLVTREREITAVQARM---QASYQDHVNETQQLQGKIRALQEQLEngpntQLARLQQENSILRDALNQATSQtesk 409
Cdd:COG4942 105 ELAELLRALYRLGRQPPLALllsPEDFLDAVRRLQYLKYLAPARREQAE-----ELRADLAELAALRAELEAERAE---- 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024390164 410 QNAELAKLRQECNKLMKELSEKSEVLQQEEQQKKSWEIKAAASEKQIEQLQTSQREMEATLQKR 473
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
767-953 |
1.21e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 1.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 767 KSLEDMIEKLKAELQSTDQLKEYISLLEAQLEnHLQTASSERQNYTKEVEGLRQLlsesqeQLEAAKTETQKQSKELALL 846
Cdd:COG4913 221 PDTFEAADALVEHFDDLERAHEALEDAREQIE-LLEPIRELAERYAAARERLAEL------EYLRAALRLWFAQRRLELL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 847 KMQLEQNEALMEKEQELRQKLTRELEEAQSSACSLQAEL-----EKLRLAENAAASDMEEAQHLKERLEKEKKLTRDLGQ 921
Cdd:COG4913 294 EAELEELRAELARLEAELERLEARLDALREELDELEAQIrgnggDRLEQLEREIERLERELEERERRRARLEALLAALGL 373
|
170 180 190
....*....|....*....|....*....|..
gi 2024390164 922 AATKLQELLKVTQDQLAKERETVKKLKEQLHE 953
Cdd:COG4913 374 PLPASAEEFAALRAEAAALLEALEEELEALEE 405
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
767-957 |
2.53e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 44.85 E-value: 2.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 767 KSLEDMIEKLKAELQSTDQLKEYISLLEAqlENHLQTASSERQNYTKEVEGLRQLLSESQEQLEAAKTETQKQSKELALL 846
Cdd:COG2433 376 LSIEEALEELIEKELPEEEPEAEREKEHE--ERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEA 453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 847 KMQLEQNealMEKEQELRqKLTRELEeaqssacSLQAELEKLRlaenaaasdmEEAQHLKERLEKEKKLTR-DLGQAATK 925
Cdd:COG2433 454 RSEERRE---IRKDREIS-RLDREIE-------RLERELEEER----------ERIEELKRKLERLKELWKlEHSGELVP 512
|
170 180 190
....*....|....*....|....*....|..
gi 2024390164 926 LQELLKVTqdqlakeRETVKKLKEQLHEKGEE 957
Cdd:COG2433 513 VKVVEKFT-------KEAIRRLEEEYGLKEGD 537
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
567-782 |
2.82e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 2.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 567 DLQAANEAEMKQLQLRLQEKTDQLLSLEREAAELREAMEQQKTKNNDLREKnwkaVEALTTVEKACEEKLLAATKAKEEL 646
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARR----IRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 647 AHQLDVLQTRTKETLLSAlpeVTVSQQDYEAWL---QEFKEKAVNVLKQHTVMTEPVDSALKLKEAEEAQSTLQAECEQY 723
Cdd:COG4942 96 RAELEAQKEELAELLRAL---YRLGRQPPLALLlspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2024390164 724 RAILAETEGMLRDLQKSVEEEEQVWKAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQS 782
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
343-625 |
2.95e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.94 E-value: 2.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 343 REITAVQARMQASYQDHVNETQQLQGKIRALQEQLEngpntQLARLQQENSILRDA-----LNQATSQTESKQNAElAKL 417
Cdd:COG3096 839 AALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQ-----LLNKLLPQANLLADEtladrLEELREELDAAQEAQ-AFI 912
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 418 RQECNKLmKELSEKSEVLQQEEQQKKswEIKAAASEKQIEQLQTSQR---------------------------EMEATL 470
Cdd:COG3096 913 QQHGKAL-AQLEPLVAVLQSDPEQFE--QLQADYLQAKEQQRRLKQQifalsevvqrrphfsyedavgllgensDLNEKL 989
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 471 QKRLDEVSDELRKTQtsyrslvadaEKAKGQQQSIAELQAKLLSSETEVKSKLLELDSLKGKLQE-----ASSENTRLLE 545
Cdd:COG3096 990 RARLEQAEEARREAR----------EQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEElgvqaDAEAEERARI 1059
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 546 RIKSIEALLEAGRMREAEEDRDLQaANEAEMKQLQLRLQEktdqllsLEREAAELREAMEQQKtknndlreKNWKAVEAL 625
Cdd:COG3096 1060 RRDELHEELSQNRSRRSQLEKQLT-RCEAEMDSLQKRLRK-------AERDYKQEREQVVQAK--------AGWCAVLRL 1123
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
552-912 |
3.13e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 44.50 E-value: 3.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 552 ALLEAGRMREAEEDR-DLQAANEAEMKQLQLRLQEKTDQLLSLEREAAELREAMEQQKTKNNDLREKNWKAVEALTTVEK 630
Cdd:pfam07888 29 AELLQNRLEECLQERaELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSA 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 631 ACEEkllaATKAKEELAHQLDVLQTRTKEtLLSALPEVTVSQQDYEAWLQEFKEKAVNVLKQ-HTVMTEPVDSALKLKEA 709
Cdd:pfam07888 109 SSEE----LSEEKDALLAQRAAHEARIRE-LEEDIKTLTQRVLERETELERMKERAKKAGAQrKEEEAERKQLQAKLQQT 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 710 EEAQSTLQAECEQYRAILAETEGMLRDLQKSVEE------EEQVWKAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQST 783
Cdd:pfam07888 184 EEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTltqkltTAHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSM 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 784 DQLKEY-------ISLLEAQLENHLQTAS----SERQNYTKEVEGLRQLLSESQEQLEAAKTETQKQSKELALLKMQLEQ 852
Cdd:pfam07888 264 AAQRDRtqaelhqARLQAAQLTLQLADASlalrEGRARWAQERETLQQSAEADKDRIEKLSAELQRLEERLQEERMEREK 343
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024390164 853 NEALMEKEQE----LRQKLTRELEEAQSSACSLQAELEKLRLAENAAasdMEEAQHLKERLEKE 912
Cdd:pfam07888 344 LEVELGREKDcnrvQLSESRRELQELKASLRVAQKEKEQLQAEKQEL---LEYIRQLEQRLETV 404
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
289-889 |
3.65e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.40 E-value: 3.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 289 KRQLEEKEKQLTAEQEDAAA----ARNKLRELSKELAAEKAKAAASESKLKEQ------LVTREREITAVQARMQASYQD 358
Cdd:pfam01576 428 RAELAEKLSKLQSELESVSSllneAEGKNIKLSKDVSSLESQLQDTQELLQEEtrqklnLSTRLRQLEDERNSLQEQLEE 507
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 359 HVNETQQLQGKIRALQEQLEN------GPNTQLARLQQENSILRDALNQATSQTESKQnAELAKLRQECNKLMKELSEKS 432
Cdd:pfam01576 508 EEEAKRNVERQLSTLQAQLSDmkkkleEDAGTLEALEEGKKRLQRELEALTQQLEEKA-AAYDKLEKTKNRLQQELDDLL 586
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 433 EVLQQEEQQKKSWEIKaaasEKQIEQLQTSQREMEATLQKRLDEVSDELRKTQTSYRSLVADAEKAKGQQQSI------- 505
Cdd:pfam01576 587 VDLDHQRQLVSNLEKK----QKKFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARALEEALEAKEELertnkql 662
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 506 -AELQAkLLSSETEVKSKLLELDSLKGKLQEASSENTRLLERIKSIEALLEAGRMR--------EAEEDRDLQAANEAEm 576
Cdd:pfam01576 663 rAEMED-LVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRlevnmqalKAQFERDLQARDEQG- 740
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 577 kqlqlrlQEKTDQLLSLEREAAELREAMEQQKTKNNDLREKnwkaveaLTTVEKACEEKLLAATKAKEELAHQLDVLQTR 656
Cdd:pfam01576 741 -------EEKRRQLVKQVRELEAELEDERKQRAQAVAAKKK-------LELDLKELEAQIDAANKGREEAVKQLKKLQAQ 806
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 657 TKEtLLSALPEVTVSQQDYEAWLQEFKEKAVNVLKQHTVMTEPVDSALKLKEAEEAQ---------------STLQAECE 721
Cdd:pfam01576 807 MKD-LQRELEEARASRDEILAQSKESEKKLKNLEAELLQLQEDLAASERARRQAQQErdeladeiasgasgkSALQDEKR 885
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 722 QYRAILAETEGMLRDLQ-----------KSVEEEEQVwKAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQSTDQ----- 785
Cdd:pfam01576 886 RLEARIAQLEEELEEEQsntellndrlrKSTLQVEQL-TTELAAERSTSQKSESARQQLERQNKELKAKLQEMEGtvksk 964
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 786 LKEYISLLEA---QLENHLQTASSERQNYTKEVEGLRQLLSESQEQLE-------AAKTETQKQSKELALLKMQLEQNEA 855
Cdd:pfam01576 965 FKSSIAALEAkiaQLEEQLEQESRERQAANKLVRRTEKKLKEVLLQVEderrhadQYKDQAEKGNSRMKQLKRQLEEAEE 1044
|
650 660 670
....*....|....*....|....*....|....
gi 2024390164 856 LMEKEQELRQKLTRELEEAQSSACSLQAELEKLR 889
Cdd:pfam01576 1045 EASRANAARRKLQRELDDATESNESMNREVSTLK 1078
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
292-940 |
4.08e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.40 E-value: 4.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 292 LEEKEKQLTAEQEDAAAARNKLRELSKELAAEKAKAAASESKLKEQLVTREREITAVQARM---QASYQDHVNETQQLQG 368
Cdd:pfam01576 192 LEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLeeeTAQKNNALKKIRELEA 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 369 KIRALQEQLE------NGPNTQLARLQQENSILRDALNQATSQTESKQNAElAKLRQECNKLMKELSEKSEVLQQEEQQK 442
Cdd:pfam01576 272 QISELQEDLEseraarNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELR-SKREQEVTELKKALEEETRSHEAQLQEM 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 443 KSWEIKAAAS-EKQIEQLQTSQREME---ATLQKRLDEVSDELRKTQTSYRSLVADAEKAKGQQQsiaELQAKLLSSE-- 516
Cdd:pfam01576 351 RQKHTQALEElTEQLEQAKRNKANLEkakQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQ---ELQARLSESErq 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 517 -TEVKSKL----LELDSLKGKLQEASSENTRLLERIKSIEALLEAGRMREAEEDRDLQA------ANEAEMKQLQLRLQE 585
Cdd:pfam01576 428 rAELAEKLsklqSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNlstrlrQLEDERNSLQEQLEE 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 586 KTDQLLSLEREAAELREAMEQQKTKnndlREKNWKAVEALTTVEKACEEKLLAATKAKEELAHQLDVLQtRTKETLLSAL 665
Cdd:pfam01576 508 EEEAKRNVERQLSTLQAQLSDMKKK----LEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLE-KTKNRLQQEL 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 666 PEVTVSQQDYEAWLQ--EFKEKAVNVLKQHTVM--------------------TEPVDSALKLKEAEEAQSTLQAECEQY 723
Cdd:pfam01576 583 DDLLVDLDHQRQLVSnlEKKQKKFDQMLAEEKAisaryaeerdraeaearekeTRALSLARALEEALEAKEELERTNKQL 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 724 RAILAETEGMLRDLQKSVEEEEQVWKAkltvSEEELQKSQLQLKSLEDmieKLKAELQSTDQLKEYISLLEAQLENHLQT 803
Cdd:pfam01576 663 RAEMEDLVSSKDDVGKNVHELERSKRA----LEQQVEEMKTQLEELED---ELQATEDAKLRLEVNMQALKAQFERDLQA 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 804 asSERQNYTKEVEGLRQlLSESQEQLEAAKTETQKQSKELALLKMQLEQNEALMEKEQELRQKLTRELEEAQSSACSLQA 883
Cdd:pfam01576 736 --RDEQGEEKRRQLVKQ-VRELEAELEDERKQRAQAVAAKKKLELDLKELEAQIDAANKGREEAVKQLKKLQAQMKDLQR 812
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*..
gi 2024390164 884 ELEKLRLAENAAASDMEEAQHLKERLEKEKKLTRDLGQAATKLQELLKVTQDQLAKE 940
Cdd:pfam01576 813 ELEEARASRDEILAQSKESEKKLKNLEAELLQLQEDLAASERARRQAQQERDELADE 869
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
290-954 |
4.18e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 44.27 E-value: 4.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 290 RQLEEKEKQLTAEQEDAAAARNKLRELSKELAAEKAKAAASESKLKEQLVTREREITAVQARMQASYQDHVNETQQlqgk 369
Cdd:TIGR00606 315 REKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSER---- 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 370 iralqeQLENGPNTQLARLQQENSILRDALNQATSQTESKQNAeLAKLRQECNKLMKELSEKSEVLQQEEQQKKSweika 449
Cdd:TIGR00606 391 ------QIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQ-ADEIRDEKKGLGRTIELKKEILEKKQEELKF----- 458
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 450 aaSEKQIEQLQTSQremeatlqKRLDEVSDELRKTQTSYRSLVADA--EKAKGQQQSIAELQAKLLSSETEVKSKLLELD 527
Cdd:TIGR00606 459 --VIKELQQLEGSS--------DRILELDQELRKAERELSKAEKNSltETLKKEVKSLQNEKADLDRKLRKLDQEMEQLN 528
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 528 SLKGKLQEASS---ENTRLLERIKSI------EALLEAGRMREAEEDRDLQAANEAEMKQLQLRLQEKTDQLLSLEREAA 598
Cdd:TIGR00606 529 HHTTTRTQMEMltkDKMDKDEQIRKIksrhsdELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKN 608
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 599 ELREAMEQQKTKNNDLREKNWKAV--EALTTVEKACEEKLLAATKAKEELAHQLDVLQTRTKETLLSALPEVTVSQQDY- 675
Cdd:TIGR00606 609 HINNELESKEEQLSSYEDKLFDVCgsQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFq 688
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 676 -EAWLQEFKEKAVNVLKQHTVMTEPVDSALKLKEAEEAQSTLQAECEQYRAILAETE-GMLRDLQKSVEEEEQVWKAKLT 753
Cdd:TIGR00606 689 tEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEiPELRNKLQKVNRDIQRLKNDIE 768
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 754 VSEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQlenhlqTASSERQNYTKEVEGLRQLLSESQEQLEAAK 833
Cdd:TIGR00606 769 EQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQ------AAKLQGSDLDRTVQQVNQEKQEKQHELDTVV 842
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 834 TEtqkqskelallkmqLEQNEALMEKEQELRQKLTRELEEAQSSACSLQAELEKLRLAENAAASDMEEAQHLKERLEKEK 913
Cdd:TIGR00606 843 SK--------------IELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAK 908
|
650 660 670 680
....*....|....*....|....*....|....*....|....*
gi 2024390164 914 KLTRDLGQAATKLQ----ELLKVTQDQLAKERETVKKLKEQLHEK 954
Cdd:TIGR00606 909 EQDSPLETFLEKDQqekeELISSKETSNKKAQDKVNDIKEKVKNI 953
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
437-951 |
4.26e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.44 E-value: 4.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 437 QEEQQKKSWEIKAAASEKQIEQLQTSQREMEATLQKRLDEVSDELRKTQTSYRSLVAD----AEKAKGQQQSIAELQAKL 512
Cdd:pfam12128 213 PPKSRLNRQQVEHWIRDIQAIAGIMKIRPEFTKLQQEFNTLESAELRLSHLHFGYKSDetliASRQEERQETSAELNQLL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 513 LSSETEVKSKL----LELDSLKGKLQEASSENTRLLERI-----------------------------KSIEALLEAGRM 559
Cdd:pfam12128 293 RTLDDQWKEKRdelnGELSAADAAVAKDRSELEALEDQHgafldadietaaadqeqlpswqselenleERLKALTGKHQD 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 560 REAEEDRDLQAANE------AEMKQLQLRLQEKTDQLLSLEREA-----AELREAMEQQKTKNNDlreknwkavEALTTV 628
Cdd:pfam12128 373 VTAKYNRRRSKIKEqnnrdiAGIKDKLAKIREARDRQLAVAEDDlqaleSELREQLEAGKLEFNE---------EEYRLK 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 629 EKACEEKL-LAATKAKEELAHQL---DVLQTRTKETLLSALPEVTvSQQDYEAWLQEFKEKAVNVLKQHTVMTEPVDSAL 704
Cdd:pfam12128 444 SRLGELKLrLNQATATPELLLQLenfDERIERAREEQEAANAEVE-RLQSELRQARKRRDQASEALRQASRRLEERQSAL 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 705 klkeaEEAQSTLQAECEQYRAILAETEGMLRDLQKSVEEEEQVWKAKLTVSEEELQKSQ-LQLKSLEDMIEKLKAE--LQ 781
Cdd:pfam12128 523 -----DELELQLFPQAGTLLHFLRKEAPDWEQSIGKVISPELLHRTDLDPEVWDGSVGGeLNLYGVKLDLKRIDVPewAA 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 782 STDQLKEYIslleAQLENHLQTASSERQnytkeveglrqllsESQEQLEAAKTETQKQSKELALLKMQLEQNE----ALM 857
Cdd:pfam12128 598 SEEELRERL----DKAEEALQSAREKQA--------------AAEEQLVQANGELEKASREETFARTALKNARldlrRLF 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 858 EKEQELRQKLTRELEEAQSSAcslqaeLEKLRLAENAAASDMEEAQHLKERLEKEKKLTRDLGQAatKLQELLKVTQDQL 937
Cdd:pfam12128 660 DEKQSEKDKKNKALAERKDSA------NERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQA--YWQVVEGALDAQL 731
|
570
....*....|....
gi 2024390164 938 AKERETVKKLKEQL 951
Cdd:pfam12128 732 ALLKAAIAARRSGA 745
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
396-606 |
6.77e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 6.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 396 RDALNQATSQTESKQNAELAKLRQECNKLMKELS---EKSEVLQQEEQQKksweikaaASEKQIEQLQTSQREMEATL-- 470
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAEAALEefrQKNGLVDLSEEAK--------LLLQQLSELESQLAEARAELae 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 471 -QKRLDEVSDELRKTQTSYRSLVADAEKAKGQQQsIAELQAKLLSSETEVKSKLLELDSLKGKLQEASSENTRLLERIK- 548
Cdd:COG3206 238 aEARLAALRAQLGSGPDALPELLQSPVIQQLRAQ-LAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILa 316
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2024390164 549 SIEALLEAGRMREAEedrdlQAANEAEMKQLQLRLQEKTDQLLSLEREAAELREAMEQ 606
Cdd:COG3206 317 SLEAELEALQAREAS-----LQAQLAQLEARLAELPELEAELRRLEREVEVARELYES 369
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
418-957 |
7.08e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.56 E-value: 7.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 418 RQECNKLMKELSEKSEVLQQEEQQK-KSWEIKAAASEKQIEQLQTSQREMEATLQKRLDEVSDELRKTQTSYRSLVADAE 496
Cdd:pfam05483 210 RLEMHFKLKEDHEKIQHLEEEYKKEiNDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 497 KAKGQQQSIAELQAKLLSSETEVKSklleldsLKGKLQEASSENTRLLERIKSIEALLEAGRMREAEEDRDLQAAN---E 573
Cdd:pfam05483 290 KKDHLTKELEDIKMSLQRSMSTQKA-------LEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTcslE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 574 AEMKQLQLRLQEKTDQL----LSLEREAAELREAMEQQKTKNNDLRE-KNWKAVEALTTVEKACEEKLLAATKAKEElaH 648
Cdd:pfam05483 363 ELLRTEQQRLEKNEDQLkiitMELQKKSSELEEMTKFKNNKEVELEElKKILAEDEKLLDEKKQFEKIAEELKGKEQ--E 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 649 QLDVLQTRTKET--LLSALPEVTVSQQDYEAWLQEFKEKAVNVLKQHTVMTEPVDSALK-----LKEAEEAQSTLQAECE 721
Cdd:pfam05483 441 LIFLLQAREKEIhdLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLenkelTQEASDMTLELKKHQE 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 722 QYRAILAETEGMLRDLQKSVEEEEQVWKAKLTVSEEELQKS---QLQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQLE 798
Cdd:pfam05483 521 DIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGdevKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLK 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 799 NHLQTASSERQNYTKEVEGLRQLLSESQEQLEAAKTETQKQSKELALLKMQLEQNEALMEKEQELR----QKLTRELEEA 874
Cdd:pfam05483 601 KQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKkiseEKLLEEVEKA 680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 875 QSS---ACSLQAELEKL---RLAENAAAsdMEEAQHLKERLEKEKKLTRDLGQAATKLQELLKVT-QDQLAKERETVKKL 947
Cdd:pfam05483 681 KAIadeAVKLQKEIDKRcqhKIAEMVAL--MEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAAlEIELSNIKAELLSL 758
|
570
....*....|
gi 2024390164 948 KEQLHEKGEE 957
Cdd:pfam05483 759 KKQLEIEKEE 768
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
795-950 |
7.71e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.22 E-value: 7.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 795 AQLENHLQTASSERQNYTKEVEGLRQLLSESQEQLEAAKTETQKQSKELALLKMQLEQNEALMEKEQElRQKLTRELEEA 874
Cdd:COG1579 13 QELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEE-QLGNVRNNKEY 91
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024390164 875 QSsacsLQAELEKLRLAENAAASDMEEAQHLKERLEKE-KKLTRDLGQAATKLQELLKVTQDQLAKERETVKKLKEQ 950
Cdd:COG1579 92 EA----LQKEIESLKRRISDLEDEILELMERIEELEEElAELEAELAELEAELEEKKAELDEELAELEAELEELEAE 164
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
281-862 |
8.08e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.42 E-value: 8.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 281 KGDPVAVLKRQLEEKEKQLTAEQEDAAAARNKL-RELSKELAAEKAKAAASESKLKEQLVTREREITAVQARMQASYQDH 359
Cdd:TIGR00618 291 KAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRaKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREI 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 360 VNETQQLQGKIRALQEQLE-----------------NGPNTQLARLQQENSILRDALNQATSQTESKQNAELAKLRQEC- 421
Cdd:TIGR00618 371 SCQQHTLTQHIHTLQQQKTtltqklqslckeldilqREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCt 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 422 -----------NKLMKELSEKSEVLQQEEQQKKSWEIKAAASEKQIEQLQTSQREMEATLQkrldevsdELRKTQTSYRS 490
Cdd:TIGR00618 451 aqceklekihlQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCI--------HPNPARQDIDN 522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 491 LVADAEKAKGQQQSIAELQAKLLSSETEVKSKLLELDSLKGKLQEASSENTRLLERIKSIEALLEaGRMREAEEDRDLQA 570
Cdd:TIGR00618 523 PGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIP-NLQNITVRLQDLTE 601
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 571 ANEAEMKQLQLRLQEktdQLLSLEREAAELREAMEQQKTKNNDLREKNWKAVEALTTVEKACEEKLLAATKAKEELAHQL 650
Cdd:TIGR00618 602 KLSEAEDMLACEQHA---LLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASR 678
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 651 dvlqtrtketlLSALPEVTVSQQDYEAWLQEFKEKAVNVLKQHTVMTEpvdSALKLKEAEEAQSTLQAECEQYRAILAET 730
Cdd:TIGR00618 679 -----------QLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEE---YDREFNEIENASSSLGSDLAAREDALNQS 744
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 731 EGMLRDLQKSV----EEEEQVWKAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEYIsllEAQLENHLQTASS 806
Cdd:TIGR00618 745 LKELMHQARTVlkarTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEI---GQEIPSDEDILNL 821
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 2024390164 807 ERQNYTKEVEGLRQLLSESQEQLEAAKTEtQKQSKELALLKMQLEQNEALMEKEQE 862
Cdd:TIGR00618 822 QCETLVQEEEQFLSRLEEKSATLGEITHQ-LLKYEECSKQLAQLTQEQAKIIQLSD 876
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
307-961 |
9.74e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.40 E-value: 9.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 307 AAARNKLRELSKELAAEKAKAAASESKLKEQLVTREREITAVQAR---MQASYQ---DHVNETQ---QLQGKIRALQEQL 377
Cdd:COG3096 277 ANERRELSERALELRRELFGARRQLAEEQYRLVEMARELEELSAResdLEQDYQaasDHLNLVQtalRQQEKIERYQEDL 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 378 ENGPntqlARLQQENSILRDALNQATSQTESKQNAElaklrQECNKLMKELSEksevLQQ--EEQQKKSWEIKAA--ASE 453
Cdd:COG3096 357 EELT----ERLEEQEEVVEEAAEQLAEAEARLEAAE-----EEVDSLKSQLAD----YQQalDVQQTRAIQYQQAvqALE 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 454 KQIEQLQTSQ------REMEATLQKRLDEVSDELRKTQTSyrslVADAEKAKGQQQSIAEL---------------QAK- 511
Cdd:COG3096 424 KARALCGLPDltpenaEDYLAAFRAKEQQATEEVLELEQK----LSVADAARRQFEKAYELvckiageversqawqTARe 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 512 LLSSETEVKSKLLELDSLKGKLQEASsentRLLERIKSIEALLEAGRMREAeedRDLQAANEAEMkqLQLRLQEKTDQLL 591
Cdd:COG3096 500 LLRRYRSQQALAQRLQQLRAQLAELE----QRLRQQQNAERLLEEFCQRIG---QQLDAAEELEE--LLAELEAQLEELE 570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 592 SLEREAAELREAMEQQ------KTKNNDLREKNW-KAVEALTTVEKACEEKLL---AATKAKEELAHQLDVLQT------ 655
Cdd:COG3096 571 EQAAEAVEQRSELRQQleqlraRIKELAARAPAWlAAQDALERLREQSGEALAdsqEVTAAMQQLLEREREATVerdela 650
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 656 RTKETLLSALPEVTVSQQDYEAWLQEFKEKAVNVL-----------------------KQHTVMTEPVDSALKLKEAEE- 711
Cdd:COG3096 651 ARKQALESQIERLSQPGGAEDPRLLALAERLGGVLlseiyddvtledapyfsalygpaRHAIVVPDLSAVKEQLAGLEDc 730
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 712 --------------AQSTLQAEcEQYRAILAETEGmlRDLQKSVEEEEQVW--KAKltvsEEELQKSQLQLKSLEDMIEK 775
Cdd:COG3096 731 pedlyliegdpdsfDDSVFDAE-ELEDAVVVKLSD--RQWRYSRFPEVPLFgrAAR----EKRLEELRAERDELAEQYAK 803
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 776 LKAELQSTDQLKEYISLLEAQlenHLQTASSErqNYTKEVEGLRQLLSESQEQLEAAKTETQKQSKELALLKMQLEQNEA 855
Cdd:COG3096 804 ASFDVQKLQRLHQAFSQFVGG---HLAVAFAP--DPEAELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNK 878
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 856 LM--------EKEQELRQKLTRELEEAQSSACSLQAELEKLRLAENAAA---SDMEEAQHLKERLEKEKKLTRDLGQAAT 924
Cdd:COG3096 879 LLpqanlladETLADRLEELREELDAAQEAQAFIQQHGKALAQLEPLVAvlqSDPEQFEQLQADYLQAKEQQRRLKQQIF 958
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 2024390164 925 KLQELLKV--------TQDQLAKERETVKKLKEQLhEKGEEDSSK 961
Cdd:COG3096 959 ALSEVVQRrphfsyedAVGLLGENSDLNEKLRARL-EQAEEARRE 1002
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
429-957 |
1.40e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 1.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 429 SEKSEVLQQEEQQKKSWEIKAAASEKQIEQLQTSQREMEATLqkRLDEVSDELRKTQ-----TSYRSLVADAEKAKGQ-- 501
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAE--RYQALLKEKREYEgyellKEKEALERQKEAIERQla 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 502 --QQSIAELQAKLLSSETEVKSKLLELDSLKGKLQEASS-ENTRLLERIKSIEAlleagrmrEAEEDRDLQAANEAEMKQ 578
Cdd:TIGR02169 248 slEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEeEQLRVKEKIGELEA--------EIASLERSIAEKERELED 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 579 LQLRLQEKTDQLLSLEREAAELREAMEQQKTKNNDLRE--KNWKAVEALTTVEKACEEKLLAATKAK--------EELAH 648
Cdd:TIGR02169 320 AEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEeyAELKEELEDLRAELEEVDKEFAETRDElkdyreklEKLKR 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 649 QLDVLQtRTKETLLSALPEVTVSQQDYEAWLQEFKEKavnvlkQHTVMTEPVDSALKLKEAEEAQSTLQAECEQYRAILA 728
Cdd:TIGR02169 400 EINELK-RELDRLQEELQRLSEELADLNAAIAGIEAK------INELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELY 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 729 ETEGMLRDLQK---SVEEEEQVWKAKLTVSEEELQKSQLQLKSLEDMIEK---LKAELQSTDQlkEYISLLEAQLENHLQ 802
Cdd:TIGR02169 473 DLKEEYDRVEKelsKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGvhgTVAQLGSVGE--RYATAIEVAAGNRLN 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 803 TASSERQ-------NYTKEVEG----------LRQLLSESQ-----------------------------------EQLE 830
Cdd:TIGR02169 551 NVVVEDDavakeaiELLKRRKAgratflplnkMRDERRDLSilsedgvigfavdlvefdpkyepafkyvfgdtlvvEDIE 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 831 AAKT------------ETQKQSKELALLKMQLEQNEALMEKEQELRQKLTRELEEAQSSACSLQAELEKLRLAENAAASD 898
Cdd:TIGR02169 631 AARRlmgkyrmvtlegELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQE 710
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 2024390164 899 MEEAQHLKERLEKEKKLTRDLGQAATKLQELLKVTQDQLAKERETVKKLKEQLHEKGEE 957
Cdd:TIGR02169 711 LSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEE 769
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
707-963 |
1.47e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 1.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 707 KEAEEAQSTLQAECEQYRAILAETEgmlrDLQKSVEEEEQvwkaKLTVSEEELQKSQLQLKSLEDMIEKLKAELQSTDQL 786
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTE----NIEELIKEKEK----ELEEVLREINEISSELPELREELEKLEKEVKELEEL 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 787 KEYISLLEAQLEnhlqtasSERQNYTKEVEGLRQLlSESQEQLEAAKTETQKQSKELALLKMQLEQNEALMEKEQELRQK 866
Cdd:PRK03918 237 KEEIEELEKELE-------SLEGSKRKLEEKIREL-EERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDE 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 867 LTR---ELEEAQSSACSLQAELEKLRLAENAAASDMEEAQHLKERLEKEKKLTRDLGQAATKLQELLKV-------TQDQ 936
Cdd:PRK03918 309 LREiekRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLkkrltglTPEK 388
|
250 260
....*....|....*....|....*..
gi 2024390164 937 LAKERETVKKLKEQLHEKGEEDSSKEG 963
Cdd:PRK03918 389 LEKELEELEKAKEEIEEEISKITARIG 415
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
291-515 |
1.61e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.59 E-value: 1.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 291 QLEEKEKQLTAEQEDAAAARNKLRELSKELaaekakaaaseSKLKEQL--VTREREITAVQARMQASYQDHVNETQQLQ- 367
Cdd:PRK11281 74 KIDRQKEETEQLKQQLAQAPAKLRQAQAEL-----------EALKDDNdeETRETLSTLSLRQLESRLAQTLDQLQNAQn 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 368 ------GKIRALQEQLENGPN---TQLARLQQENSILRD-ALNQATSQTESKQ--NAELAKL-------RQEC------- 421
Cdd:PRK11281 143 dlaeynSQLVSLQTQPERAQAalyANSQRLQQIRNLLKGgKVGGKALRPSQRVllQAEQALLnaqndlqRKSLegntqlq 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 422 ---NKLMKELSEKSEVLQQEEQ--QKKSWEIKAAASEKQIEQLQTSQREMEAT----LQKRLD---EVSDELRKTQTSYR 489
Cdd:PRK11281 223 dllQKQRDYLTARIQRLEHQLQllQEAINSKRLTLSEKTVQEAQSQDEAARIQanplVAQELEinlQLSQRLLKATEKLN 302
|
250 260 270
....*....|....*....|....*....|....*..
gi 2024390164 490 SLVADAEKAKGQ----QQS-------IAELQAKLLSS 515
Cdd:PRK11281 303 TLTQQNLRVKNWldrlTQSernikeqISVLKGSLLLS 339
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
636-891 |
1.81e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 1.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 636 LLAATKAKEELAHQLDVLQTRTKEtLLSALPEVTVSQQDYEAWLQEFKEKAVNVLKQ-HTVMTEPVDSALKLKEAEEAQS 714
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAE-LEKELAALKKEEKALLKQLAALERRIAALARRiRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 715 TLQAECEQYRAILAEtegMLRDLQKSveeeEQVWKAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEYISLLE 794
Cdd:COG4942 94 ELRAELEAQKEELAE---LLRALYRL----GRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 795 AQLENHLQTASSERQNYTKEVEGLRQLLSESQEQLEAAKTETQKQSKELALLKMQLEQNEALMEKeqelrqkLTRELEEA 874
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR-------LEAEAAAA 239
|
250
....*....|....*..
gi 2024390164 875 QSSACSLQAELEKLRLA 891
Cdd:COG4942 240 AERTPAAGFAALKGKLP 256
|
|
| CAGE1 |
pfam15066 |
Cancer-associated gene protein 1 family; CAGE-1 is a family of proteins overexpressed in ... |
767-911 |
1.98e-03 |
|
Cancer-associated gene protein 1 family; CAGE-1 is a family of proteins overexpressed in tumour tissues compared with surrounding tissues. CAGE-1 gene showed testis-specific expression among normal tissues and displayed wide expression in a variety of cancer cell lines and cancer tissues. CAGE-1 is predominantly expressed during post-meiotic stages. It localizes to the acrosomal matrix and acrosomal granule showing it to be a component of the acrosome of mammalian spermatids and spermatozoa.
Pssm-ID: 464481 Cd Length: 528 Bit Score: 41.74 E-value: 1.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 767 KSLEDMIE-KLKAELQSTDQLKEYISLLE--AQLENHLQTASSERQNYTKEVEGLRQLLSESQEQLeaaKTETQKQSKEL 843
Cdd:pfam15066 370 ENVEELIEdKYNVILEKNDINKTLQNLQEilANTQKHLQESRKEKETLQLELKKIKVNYVHLQERY---ITEMQQKNKSV 446
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2024390164 844 ALLkmqLEQNEALMEKEQELR--QKLTRELEEAQSSACSL------QAELEKLRLAENAAASD---MEEAQHLKERLEK 911
Cdd:pfam15066 447 SQC---LEMDKTLSKKEEEVErlQQLKGELEKATTSALDLlkrekeTREQEFLSLQEEFQKHEkenLEERQKLKSRLEK 522
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
391-611 |
1.98e-03 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 42.13 E-value: 1.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 391 ENSILRDALNQATSQTESKQNAELAKLRQECNKlmkelseksEVLQQEEQQkksweikaaasekQIEQLQTSQREMEATL 470
Cdd:NF012221 1539 ESSQQADAVSKHAKQDDAAQNALADKERAEADR---------QRLEQEKQQ-------------QLAAISGSQSQLESTD 1596
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 471 QKRLD---------------EVSDELRKTQTSYRSLVADAEKA--KGQQQSiAELQAKLLSSeteVKSKLLELDSLKGK- 532
Cdd:NF012221 1597 QNALEtngqaqrdaileesrAVTKELTTLAQGLDALDSQATYAgeSGDQWR-NPFAGGLLDR---VQEQLDDAKKISGKq 1672
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 533 LQEASSENTRLLERIKSIEALLEAGRMR------EAEEDRDlQAANEAEMKQLQLRLQEKTDQLL----SLEREAAELRE 602
Cdd:NF012221 1673 LADAKQRHVDNQQKVKDAVAKSEAGVAQgeqnqaNAEQDID-DAKADAEKRKDDALAKQNEAQQAesdaNAAANDAQSRG 1751
|
....*....
gi 2024390164 603 AMEQQKTKN 611
Cdd:NF012221 1752 EQDASAAEN 1760
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
738-950 |
2.01e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.21 E-value: 2.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 738 QKSVEEEEQVWKAKLTVSEEELQKSQLQLKSLEDmiekLKAEL-QSTDQLKEYISLLEAqLENhlQTASSERQNYTK-EV 815
Cdd:PRK11281 51 QKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQ----LKQQLaQAPAKLRQAQAELEA-LKD--DNDEETRETLSTlSL 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 816 EGLRQLLSESQEQLEAAKTETQKQSKELALLKMQLEQNEALM----EKEQELRQKLT-------------RELEEAQSSA 878
Cdd:PRK11281 124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALyansQRLQQIRNLLKggkvggkalrpsqRVLLQAEQAL 203
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024390164 879 CSLQAELEKLRLAENAAASDMEEAQH--LKE---RLEKEKKLtrdlgqaatkLQELlkVTQDQLAKERETVKKLKEQ 950
Cdd:PRK11281 204 LNAQNDLQRKSLEGNTQLQDLLQKQRdyLTAriqRLEHQLQL----------LQEA--INSKRLTLSEKTVQEAQSQ 268
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
113-310 |
2.07e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 41.79 E-value: 2.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 113 ESPIAAVSVPPQEKEKPALSPKEKRKKEKKVAKVEPAPSPALASPPASVPKG----SPVLEVTPKEVPVVAVPPVGTQQS 188
Cdd:PRK12323 371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAparrSPAPEALAAARQASARGPGGAPAP 450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 189 APVVSSVPIKKPEALPTHEEQKHDGPVKKKSASKKKAEPAPADSDGPlylPYKTLVSTISSMAFSEGEA--QQLIEILTE 266
Cdd:PRK12323 451 APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPP---PWEELPPEFASPAPAQPDAapAGWVAESIP 527
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2024390164 267 RAGIVQDTWHTATQKGDPVA-VLKRQLEEKEKQLTAEQEDAAAAR 310
Cdd:PRK12323 528 DPATADPDDAFETLAPAPAAaPAPRAAAATEPVVAPRPPRASASG 572
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
654-966 |
2.23e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.03 E-value: 2.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 654 QTRTKETLLSALPEVTVSQQDYEAWLQEFKEKAVNVLKQHTVMTEPVDSALKLKEAEEAQSTLQAECEQYRAILAETEGM 733
Cdd:pfam17380 263 QTMTENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERM 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 734 LRDLQKSVE---------EEEQVWKAKLTVSEE---ELQKSQL--------------------------QLKSLEDMIEK 775
Cdd:pfam17380 343 AMERERELErirqeerkrELERIRQEEIAMEISrmrELERLQMerqqknervrqeleaarkvkileeerQRKIQQQKVEM 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 776 LKAELQSTDQLKEYISLLEAQLENHLQTASSERQNYTKEVEGLRQLLSE-SQEQLEAAKTETQKQSKE---LALLKMQLE 851
Cdd:pfam17380 423 EQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEErKRKKLELEKEKRDRKRAEeqrRKILEKELE 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 852 QNEALMEKEQELRQKLTRELEEAQSSAcslqAELEKLRLAenaaasdmEEAQHLKERLEKEKKLTRDLGQAATKLQELlk 931
Cdd:pfam17380 503 ERKQAMIEEERKRKLLEKEMEERQKAI----YEEERRREA--------EEERRKQQEMEERRRIQEQMRKATEERSRL-- 568
|
330 340 350
....*....|....*....|....*....|....*
gi 2024390164 932 vtqDQLAKERETVKKLKEQLHEKGEEDSSKEGTSV 966
Cdd:pfam17380 569 ---EAMEREREMMRQIVESEKARAEYEATTPITTI 600
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
284-761 |
2.54e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 2.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 284 PVAVLKRQLEEKEKQLTAEQEDAAAARNKLRELSKELAAEKAKAAASESKLKEQLVTREREITAVQARMQASYQDHVNET 363
Cdd:COG4913 282 RLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRR 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 364 QQLQGKIRALQEQLENGPnTQLARLQQEnsiLRDALNQATSQTESKQNAeLAKLRQECNKLMKELSEKSEVLQQEEQQKK 443
Cdd:COG4913 362 ARLEALLAALGLPLPASA-EEFAALRAE---AAALLEALEEELEALEEA-LAEAEAALRDLRRELRELEAEIASLERRKS 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 444 SW---------EIKAAASEKQIE--------QLQTSQRE----MEATL----------QKRLDEVSDELRKTQTSYRsLV 492
Cdd:COG4913 437 NIparllalrdALAEALGLDEAElpfvgeliEVRPEEERwrgaIERVLggfaltllvpPEHYAAALRWVNRLHLRGR-LV 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 493 ADAEKAKGQQQSIAELQAKLLSSETEVKSKLLElDSLKGKLQEASS----ENTRLLER----------IKSIEALLEAGR 558
Cdd:COG4913 516 YERVRTGLPDPERPRLDPDSLAGKLDFKPHPFR-AWLEAELGRRFDyvcvDSPEELRRhpraitragqVKGNGTRHEKDD 594
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 559 MREAEEDRDLQAANEAEMKQLQLRLQEKTDQLLSLEREAAEL---REAMEQQKTKNNDLREKNWKAVEALTTVEKACE-- 633
Cdd:COG4913 595 RRRIRSRYVLGFDNRAKLAALEAELAELEEELAEAEERLEALeaeLDALQERREALQRLAEYSWDEIDVASAEREIAEle 674
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 634 ---EKLLAATKAKEELAHQLDVLQTRTKETllsalpevtvsqqdyEAWLQEFKEKAVNVLKQHTVMTEPVDSALKLKEA- 709
Cdd:COG4913 675 aelERLDASSDDLAALEEQLEELEAELEEL---------------EEELDELKGEIGRLEKELEQAEEELDELQDRLEAa 739
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 2024390164 710 -EEAQSTLQAECEQYRAILAETEgMLRDLQKSVEEEEQVWKAKLTVSEEELQK 761
Cdd:COG4913 740 eDLARLELRALLEERFAAALGDA-VERELRENLEERIDALRARLNRAEEELER 791
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
284-620 |
3.44e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 41.38 E-value: 3.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 284 PVAVLKRQLEE-KEKQLTAEQEDAAAARNKLRELSKELAAEKAKAAASESK---LKEQLVTREREITavqarmQASYQDH 359
Cdd:PLN03229 430 PVRELEGEVEKlKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIamgLQERLENLREEFS------KANSQDQ 503
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 360 VNEtQQLQGKIRALQEQ----LENGPNtqLARLQQENSILRDAlNQATSQTESKQNAElaKLRQECNKLMKE------LS 429
Cdd:PLN03229 504 LMH-PVLMEKIEKLKDEfnkrLSRAPN--YLSLKYKLDMLNEF-SRAKALSEKKSKAE--KLKAEINKKFKEvmdrpeIK 577
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 430 EKSEVLQQEEQQKKSWEIkAAASEKQIEQLQTSQREMEATLQKRLDEVSDELrktqtsyrSLVADAEKAKGQQQSIAELQ 509
Cdd:PLN03229 578 EKMEALKAEVASSGASSG-DELDDDLKEKVEKMKKEIELELAGVLKSMGLEV--------IGVTKKNKDTAEQTPPPNLQ 648
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 510 AKLLSSETEVKSKLLEL---DSLKGKLQEASSE-----NTRLLERIKSIEALleagrmrEAEEDRDLQAANEAEmkqlql 581
Cdd:PLN03229 649 EKIESLNEEINKKIERVirsSDLKSKIELLKLEvakasKTPDVTEKEKIEAL-------EQQIKQKIAEALNSS------ 715
|
330 340 350
....*....|....*....|....*....|....*....
gi 2024390164 582 RLQEKTDQLLSLEREAAELREAmEQQKTKNNDLREKNWK 620
Cdd:PLN03229 716 ELKEKFEELEAELAAARETAAE-SNGSLKNDDDKEEDSK 753
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
771-962 |
3.72e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 3.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 771 DMIEKLKAELQstdQLKEYIslleAQLENHLQTASSERQNYTKEVEGLRQLLSESQEQLEAAKTETQKQSKELALLKMQL 850
Cdd:COG4942 20 DAAAEAEAELE---QLQQEI----AELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 851 EQNEALMEKEQELRQKLTRELEEAqssacSLQAELEKLRLAENAAASDMEeAQHLKERLEKEKKLTRDLGQAATKLQELL 930
Cdd:COG4942 93 AELRAELEAQKEELAELLRALYRL-----GRQPPLALLLSPEDFLDAVRR-LQYLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190
....*....|....*....|....*....|..
gi 2024390164 931 KVTQDQLAKERETVKKLKEQLHEKGEEDSSKE 962
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQ 198
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
466-684 |
4.90e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.77 E-value: 4.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 466 MEATLQKRLDEVSDELRKTQTSYRSLVADAEKA-KGQQQSIAELQAK--LLSSETEVKSKLLELDSLKGKLQEASSENTR 542
Cdd:COG3206 158 AEAYLEQNLELRREEARKALEFLEEQLPELRKElEEAEAALEEFRQKngLVDLSEEAKLLLQQLSELESQLAEARAELAE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 543 LLERIKSIEALLEAGRMREAEEDRDLQAAN--------EAEMKQLQLRLQEKTDQLLSLEREAAELREAMEQQKTknndl 614
Cdd:COG3206 238 AEARLAALRAQLGSGPDALPELLQSPVIQQlraqlaelEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQ----- 312
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 615 reknwKAVEALTTVEKACEEKLLAATKAKEELAHQLDVLQTRTKEtLLSALPEVTVSQQDYEAWLQEFKE 684
Cdd:COG3206 313 -----RILASLEAELEALQAREASLQAQLAQLEARLAELPELEAE-LRRLEREVEVARELYESLLQRLEE 376
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
584-945 |
4.96e-03 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 40.51 E-value: 4.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 584 QEKTDQLLSLEREAAELREAMEQQKTKNNDLREKNWKAV-----EALTTVEKACEEKLLAATKAKEE----LAHQLDVLQ 654
Cdd:pfam09731 88 QVKIPRQSGVSSEVAEEEKEATKDAAEAKAQLPKSEQEKekaleEVLKEAISKAESATAVAKEAKDDaiqaVKAHTDSLK 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 655 TRTKETLLSALPEVTVSQQDYEAWLQEFKEKAVNVLKQHTVMTEPVDSALKLKEAEEAQSTLQAECEQYRAilAETEGML 734
Cdd:pfam09731 168 EASDTAEISREKATDSALQKAEALAEKLKEVINLAKQSEEEAAPPLLDAAPETPPKLPEHLDNVEEKVEKA--QSLAKLV 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 735 RDLQKSVEEEEQVWKAKLTVSEEELQ-----KSQLQLKSLEDMIEKLKAELqstDQLKEYISLLEAQLENHLQTASSERq 809
Cdd:pfam09731 246 DQYKELVASERIVFQQELVSIFPDIIpvlkeDNLLSNDDLNSLIAHAHREI---DQLSKKLAELKKREEKHIERALEKQ- 321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 810 nytkeVEGLRQLLSESQEQLEAAKTETQKQskelallkMQLEQNEALMEKEQELRQKLTRELEEAQssacslQAELEKLR 889
Cdd:pfam09731 322 -----KEELDKLAEELSARLEEVRAADEAQ--------LRLEFEREREEIRESYEEKLRTELERQA------EAHEEHLK 382
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 2024390164 890 --LAENAAASDMEEAQHLKERLEKEKKL-TRDLGQAATKLQELLKVTQDQLAKERETVK 945
Cdd:pfam09731 383 dvLVEQEIELQREFLQDIKEKVEEERAGrLLKLNELLANLKGLEKATSSHSEVEDENRK 441
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
406-843 |
5.36e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 40.81 E-value: 5.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 406 TESKQNAELAKLRQECNKLMKELSEKSEV------LQQE--EQQKKSWEIKAAASE----------KQIEQLQTSQREME 467
Cdd:TIGR01612 1292 ISKKHDENISDIREKSLKIIEDFSEESDIndikkeLQKNllDAQKHNSDINLYLNEianiynilklNKIKKIIDEVKEYT 1371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 468 ATLQKRLDEVSDELRKTQTSYRSL---------------VADAEKAKGQQQSIAELQAKLLSSETEVKSKLleldslkgk 532
Cdd:TIGR01612 1372 KEIEENNKNIKDELDKSEKLIKKIkddinleeckskiesTLDDKDIDECIKKIKELKNHILSEESNIDTYF--------- 1442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 533 lQEASSENTRLLERIKSIEAlleagrmreaeedrdlqaaneAEMKQLQLRLQEKTDQLLSLEREAAELREAMEQQKtKNN 612
Cdd:TIGR01612 1443 -KNADENNENVLLLFKNIEM---------------------ADNKSQHILKIKKDNATNDHDFNINELKEHIDKSK-GCK 1499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 613 DLREKNWKAVEALTTVEKACEEKLLAATKAKEELAHQLDVLQTRT-KETLLSALPEVTvSQQDYEAwlqEFKEKAVNVLK 691
Cdd:TIGR01612 1500 DEADKNAKAIEKNKELFEQYKKDVTELLNKYSALAIKNKFAKTKKdSEIIIKEIKDAH-KKFILEA---EKSEQKIKEIK 1575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 692 QHTVMTEpvDSALKLKEAEEAQSTLQAECEQYRAILAETEGMLRDLQKSVEEEEQVWKAKLTVS----EEELQKSQLQLK 767
Cdd:TIGR01612 1576 KEKFRIE--DDAAKNDKSNKAAIDIQLSLENFENKFLKISDIKKKINDCLKETESIEKKISSFSidsqDTELKENGDNLN 1653
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024390164 768 SLEDMIEKLKAELQSTDQLKEYISLLEAQLENHLQTASSERQNY-TKEVEGLRQLLSESQEQLEAAKTETQKQSKEL 843
Cdd:TIGR01612 1654 SLQEFLESLKDQKKNIEDKKKELDELDSEIEKIEIDVDQHKKNYeIGIIEKIKEIAIANKEEIESIKELIEPTIENL 1730
|
|
| FPP |
pfam05911 |
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant ... |
767-951 |
5.77e-03 |
|
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant proteins that are filament-like. It interacts with the nuclear envelope-associated protein, MAF1, the WPP family pfam13943.
Pssm-ID: 461778 [Multi-domain] Cd Length: 859 Bit Score: 40.43 E-value: 5.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 767 KSLEDMIEKLKAElqstdqlKEYislleaqLENHLQTASSERQNYTKEVEGLRQLLSESQEQLEAAKtetqkQSKELAll 846
Cdd:pfam05911 684 KRLKEEFEQLKSE-------KEN-------LEVELASCTENLESTKSQLQESEQLIAELRSELASLK-----ESNSLA-- 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 847 KMQLEqNEALMEKEQELR-QKLTRELEEAQSSACSLQAELEKLRLAENAAASDMEEAQHLKERLEKEKKLTRDLGQAATK 925
Cdd:pfam05911 743 ETQLK-CMAESYEDLETRlTELEAELNELRQKFEALEVELEEEKNCHEELEAKCLELQEQLERNEKKESSNCDADQEDKK 821
|
170 180
....*....|....*....|....*...
gi 2024390164 926 LQELLKVT--QDQLAKERETVKKLKEQL 951
Cdd:pfam05911 822 LQQEKEITaaSEKLAECQETILNLGKQL 849
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
708-903 |
6.60e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.81 E-value: 6.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 708 EAEEAQSTLQAECEQYRAILAETEGMLRDLQKSVEEEEQVwKAKLTVSEEELQKSQLQLKSLEDMIEKLKAEL----QST 783
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNEL-QAELEALQAEIDKLQAEIAEAEAEIEERREELgeraRAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 784 DQLKEYISLLEAQLE-NHLQTASSERQNYTKEVEGLRQLLSE---SQEQLEAAKTETQKQSKELALLKMQLEQNEALMEK 859
Cdd:COG3883 96 YRSGGSVSYLDVLLGsESFSDFLDRLSALSKIADADADLLEElkaDKAELEAKKAELEAKLAELEALKAELEAAKAELEA 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2024390164 860 EQELRQKLTRELEEAQSSACSLQAELEKLRLAENAAASDMEEAQ 903
Cdd:COG3883 176 QQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAA 219
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
772-962 |
6.74e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 39.89 E-value: 6.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 772 MIEKLKAELQSTDQLKEYISLLEAQLENHLQTASSERQNYTKEVEGLRQLLSESQEQLEAAKTETQKQSKELALLKMQLE 851
Cdd:COG4372 4 LGEKVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 852 QNEALMEKEQELRQKLTRELEEAQSSACSLQAELEKLRlaenaaasdmEEAQHLKERLEKEKKLTRDLGQAATKLQELLK 931
Cdd:COG4372 84 ELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQ----------KERQDLEQQRKQLEAQIAELQSEIAEREEELK 153
|
170 180 190
....*....|....*....|....*....|.
gi 2024390164 932 VTQDQLAKERETVKKLKEQLHEKGEEDSSKE 962
Cdd:COG4372 154 ELEEQLESLQEELAALEQELQALSEAEAEQA 184
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
706-957 |
6.93e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.54 E-value: 6.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 706 LKEAEEAQSTLQAECEQYRAILA----ETEGMLRDLQKSVEEEEQvwkaKLTVSEEELQKSQLQLKSLEDMIEKLKAELQ 781
Cdd:pfam01576 45 LQEQLQAETELCAEAEEMRARLAarkqELEEILHELESRLEEEEE----RSQQLQNEKKKMQQHIQDLEEQLDEEEAARQ 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 782 STDQLKEYISLLEAQLENHLQTASSERQNYTKEveglRQLLSESQEQLEAAKTETQKQSKELALLKMQLEQNEALME--- 858
Cdd:pfam01576 121 KLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKE----RKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEerl 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 859 -KEQELRQ-------KLTRELEEAQSSACSLQAELEKLRLAenaAASDMEEAQHLKERLEKEKKLTRDLGQAATKLQELL 930
Cdd:pfam01576 197 kKEEKGRQelekakrKLEGESTDLQEQIAELQAQIAELRAQ---LAKKEEELQAALARLEEETAQKNNALKKIRELEAQI 273
|
250 260
....*....|....*....|....*..
gi 2024390164 931 KVTQDQLAKERETVKKLKEQLHEKGEE 957
Cdd:pfam01576 274 SELQEDLESERAARNKAEKQRRDLGEE 300
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
408-953 |
7.10e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.39 E-value: 7.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 408 SKQNAELAKLRQECNKLMKELSEKSEVLQQEEQQKKSWEIKAAASEKQIEQLQTSQREME---ATLQKRLDEVSDELRKT 484
Cdd:TIGR04523 120 NKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEkekLNIQKNIDKIKNKLLKL 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 485 QTSYRSLVADAEKAKGQQQSIAELQAKLLSSETEVKSKLLELDSLKGKLQEASSENTRLLERIKSIEALLEagrmreaEE 564
Cdd:TIGR04523 200 ELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLS-------EK 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 565 DRDLQAANEaEMKQLQLRLQEKTDQLLSLEREAAE--LREAMEQQKTKNNDLRE------KNWKAV----EALTTVEKAC 632
Cdd:TIGR04523 273 QKELEQNNK-KIKELEKQLNQLKSEISDLNNQKEQdwNKELKSELKNQEKKLEEiqnqisQNNKIIsqlnEQISQLKKEL 351
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 633 EEKLLAATKAKEELAHQLDVLQT--RTKETLLSALPEVTVSQQDYEAWLQEFKEKAVNVLKQhtvmtepvdsalkLKEAE 710
Cdd:TIGR04523 352 TNSESENSEKQRELEEKQNEIEKlkKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQ-------------IKKLQ 418
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 711 EAQSTLQAECEQYRAILAETEGMLRDLQKSVEEEEQVWKaKLTVSEEELQKsqlQLKSLEDMIEKLKAEL-QSTDQLKEY 789
Cdd:TIGR04523 419 QEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIK-NLDNTRESLET---QLKVLSRSINKIKQNLeQKQKELKSK 494
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 790 ISLLEaQLENHLQTASSERQNYTKEVEglrqLLSESQEQLEAAKTETQKQSKELA--LLKMQLEQNEALMEKEQELRQKL 867
Cdd:TIGR04523 495 EKELK-KLNEEKKELEEKVKDLTKKIS----SLKEKIEKLESEKKEKESKISDLEdeLNKDDFELKKENLEKEIDEKNKE 569
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 868 TRELEEAQSSACSLQAELEKLrLAENAA---------ASDMEEAQHLKERLEKEKKLTRDLGQAATKLQELLKVTQDQLA 938
Cdd:TIGR04523 570 IEELKQTQKSLKKKQEEKQEL-IDQKEKekkdlikeiEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVK 648
|
570
....*....|....*
gi 2024390164 939 KERETVKKLKEQLHE 953
Cdd:TIGR04523 649 QIKETIKEIRNKWPE 663
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
747-918 |
9.85e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 39.76 E-value: 9.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 747 VWKAKLTVSEEELqKSQLQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQL---ENHLQTAssERQNYTKEveglrQLLS 823
Cdd:PRK12704 28 IAEAKIKEAEEEA-KRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELrerRNELQKL--EKRLLQKE-----ENLD 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 824 ESQEQLEAAKTETQKQSKELALLKMQLEqnealmEKEQELRQKLTRELEEAQSSAcSLQAELEKLRLAENAAASDMEEAQ 903
Cdd:PRK12704 100 RKLELLEKREEELEKKEKELEQKQQELE------KKEEELEELIEEQLQELERIS-GLTAEEAKEILLEKVEEEARHEAA 172
|
170
....*....|....*
gi 2024390164 904 HLKERLEKEKKLTRD 918
Cdd:PRK12704 173 VLIKEIEEEAKEEAD 187
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
449-647 |
9.92e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.43 E-value: 9.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 449 AAASEKQIEQLQTSQREMEA---TLQKRLDEVSDELRKTQTSYRSLVADAEKAkgqQQSIAELQAKLLSSETEVKSKLLE 525
Cdd:COG3883 11 PAFADPQIQAKQKELSELQAeleAAQAELDALQAELEELNEEYNELQAELEAL---QAEIDKLQAEIAEAEAEIEERREE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024390164 526 LDSLKGKLQEASSENTRL------------LERIKSIEALLEAGRmREAEEDRDLQAANEAEMKQLQLRLQEKTDQLLSL 593
Cdd:COG3883 88 LGERARALYRSGGSVSYLdvllgsesfsdfLDRLSALSKIADADA-DLLEELKADKAELEAKKAELEAKLAELEALKAEL 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2024390164 594 EREAAELREAMEQQKTKNNDLREKNWKAVEALTTVEKACEEKLLAATKAKEELA 647
Cdd:COG3883 167 EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAA 220
|
|
| |
