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Conserved domains on  [gi|2024394395|ref|XP_040553924|]
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fibrocystin isoform X7 [Gallus gallus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
G8 pfam10162
G8 domain; This domain is found in disease proteins PKHD1 and KIAA1199 and is named G8 after ...
 2730-2853 6.21e-32

G8 domain; This domain is found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix.


:

Pssm-ID: 462971  Cd Length: 121  Bit Score: 122.33  E-value: 6.21e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 2730 WGGFNcsIPGPGEDVIILPNRTILVDTDLPPLRGLYILGTLEFPTNSSNVLSAACIVVVGGTLNVGSFQHPLErdSKLLV 2809
Cdd:pfam10162    2 WGGGV--VPQPGDNVVIPAGQTVLLDVSSPTLKSLVIQGTLIFDDDKNITLRARYILVQGGRLIIGSEDCPFQ--GKATI 77

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 2024394395 2810 LLRASEgiYCDHLEEISVHPGSIGV--YGKVQIYSSYPEKSWTHLG 2853
Cdd:pfam10162   78 TLHGRP--ELDDDDGPNYGSKVIGVrnGGTLELHGQPPTVTWTKLA 121
G8 pfam10162
G8 domain; This domain is found in disease proteins PKHD1 and KIAA1199 and is named G8 after ...
 1932-2050 5.52e-25

G8 domain; This domain is found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix.


:

Pssm-ID: 462971  Cd Length: 121  Bit Score: 102.30  E-value: 5.52e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 1932 SWPSGRPPQDGANVTVEAGRTLLLGAATAALHLLHLRgGKLIFTGPGPVELHAHYILISdGGELRVGSSEARFHHRAHIY 2011
Cdd:pfam10162    1 TWGGGVVPQPGDNVVIPAGQTVLLDVSSPTLKSLVIQ-GTLIFDDDKNITLRARYILVQ-GGRLIIGSEDCPFQGKATIT 78

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 2024394395 2012 LYGSLH--SPPLFPYGAKFLAVRN-GTLSIHGWVPKVTFTYL 2050
Cdd:pfam10162   79 LHGRPEldDDDGPNYGSKVIGVRNgGTLELHGQPPTVTWTKL 120
IPT_PCSR cd00603
IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup ...
 1200-1296 9.42e-14

IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.


:

Pssm-ID: 238337 [Multi-domain]  Cd Length: 90  Bit Score: 69.41  E-value: 9.42e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 1200 EVFSIEPCCGSFLGGTLLTISGLGFSQNRSLVSVSINEQTCLVTRLAEETIWCLTPPATNLSNevsqdVPVRVNMLISNS 1279
Cdd:cd00603      2 VITSISPSSGPLSGGTRLTITGSNLGSGSPRVRVTVGGVPCKVLNVSSTEIVCRTPAAATPGE-----GPVEVTVDGANV 76

                           90
                   ....*....|....*..
gi 2024394395 1280 SLQNVPvakSITFNYQR 1296
Cdd:cd00603     77 SARVLS---NTTFTYVE 90
IPT_PCSR cd00603
IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup ...
 251-304 6.71e-10

IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.


:

Pssm-ID: 238337 [Multi-domain]  Cd Length: 90  Bit Score: 58.23  E-value: 6.71e-10
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2024394395  251 EIASVFPASGSLAGGTDLTIMGDFF---EQPVRVTAAGVPCKVKRVSPRQIICTTEA 304
Cdd:cd00603      2 VITSISPSSGPLSGGTRLTITGSNLgsgSPRVRVTVGGVPCKVLNVSSTEIVCRTPA 58
IPT_PCSR cd00603
IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup ...
 1388-1452 1.44e-08

IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.


:

Pssm-ID: 238337 [Multi-domain]  Cd Length: 90  Bit Score: 54.38  E-value: 1.44e-08
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024394395 1388 PRITSIFPSQGSICGGMLLTISGIALRARRDLGQVSLdGNYSCELQSSDNSTIKCMVLPGTHLLP 1452
Cdd:cd00603      1 PVITSISPSSGPLSGGTRLTITGSNLGSGSPRVRVTV-GGVPCKVLNVSSTEIVCRTPAAATPGE 64
IPT_PCSR cd00603
IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup ...
 1022-1105 6.21e-08

IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.


:

Pssm-ID: 238337 [Multi-domain]  Cd Length: 90  Bit Score: 52.84  E-value: 6.21e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 1022 PRLVAIEPPRASEIGGLRVALRGTGLEGVNL---VLFGSQPCPVLEdtRSSTQIECKVPSRGAEDAA---VRVTLVSGYQ 1095
Cdd:cd00603      1 PVITSISPSSGPLSGGTRLTITGSNLGSGSPrvrVTVGGVPCKVLN--VSSTEIVCRTPAAATPGEGpveVTVDGANVSA 78

                           90
                   ....*....|
gi 2024394395 1096 STTVTNLFQY 1105
Cdd:cd00603     79 RVLSNTTFTY 88
IPT super family cl15674
Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as ...
 1576-1645 1.45e-06

Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor receptors), as well as, cyclodextrin glycosyltransferase and similar enzymes. Although they are involved in DNA binding in transcription factors, their function in other proteins is unknown. In these transcription factors, IPTs form homo- or heterodimers with the exception of the nuclear factor of activated Tcells (NFAT) transcription factors which are mainly monomers.


The actual alignment was detected with superfamily member cd01179:

Pssm-ID: 472823  Cd Length: 85  Bit Score: 48.76  E-value: 1.45e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024394395 1576 PQVHQFYPQNFSSNGGGLLTFAGAALKGKSRTSVLIGQHPCLILNVTCIAIQCTVPPGN--GTRALRLTVDG 1645
Cdd:cd01179      1 PSITSLSPSYGPQSGGTRLTITGKHLNAGSSVRVTVGGQPCKILSVSSSQIVCLTPPSAspGEAPVKVLIDG 72
TIG pfam01833
IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These ...
 1504-1565 1.47e-05

IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. CAUTION: This family does not currently recognize a significant number of members.


:

Pssm-ID: 460355 [Multi-domain]  Cd Length: 84  Bit Score: 45.90  E-value: 1.47e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024394395 1504 TDVTIKGQRLAWPGDSPVVHVNDQdVCKVTFWNETIVRCQMDCIAPGDHNISISNRSGQACF 1565
Cdd:pfam01833   17 TTITITGSNFGTDSSDLKVTIGGT-PCTVISVSSTTIVCTTPPGTSGLVNVSVTVGGGGISS 77
NosD super family cl34609
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
 2279-2426 3.65e-05

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


The actual alignment was detected with superfamily member COG3420:

Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 48.76  E-value: 3.65e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 2279 KGNRIRNNTVIGLSATDGLSNietlspAGIYV-RAPANHIEGNTVCAAGYGYFFHLSPErpskmplLTFSENTAHSCtRH 2357
Cdd:COG3420    129 DNNVIRNNTISGNRDLRADRG------NGIHLwNSPGNVIEGNTISGGRDGIYLEFSDN-------NVIRNNTIRNL-RY 194

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024394395 2358 GLLVYpeylpDSPDGLVQFNSFTvwSSQGGVQIFSSSNLKLQNFRIYACTDFGI---DIIESL--GNTSVANSV 2426
Cdd:COG3420    195 GIHYM-----YSNDNLVEGNTFR--DNGAGIALMYSKGNTVRGNTILGNSGYGIllkESSDSVieGNTISGNGK 261
NosD super family cl34609
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
 3008-3161 4.95e-05

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


The actual alignment was detected with superfamily member COG3420:

Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 48.37  E-value: 4.95e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 3008 GIKAVMSNGIWLHDNIVFNtVGPGIDLEGKNHSLVRNLIILSRQP------DGLL------NWVA---------GIKVNL 3066
Cdd:COG3420    100 GIYVRGADNAVIENNRIEN-NLFGIYLEGSDNNVIRNNTISGNRDlradrgNGIHlwnspgNVIEgntisggrdGIYLEF 178

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 3067 VIGVSLYGNVVAGSeRVGFHIRgqecfldvdYCSE-----NVAHSNLRGIHLYRGDGfqtcTRITGFLSYKNYDYGMMF- 3140
Cdd:COG3420    179 SDNNVIRNNTIRNL-RYGIHYM---------YSNDnlvegNTFRDNGAGIALMYSKG----NTVRGNTILGNSGYGILLk 244

                          170       180
                   ....*....|....*....|.
gi 2024394395 3141 HLGSSVIIDNVVlVDNTVGLM 3161
Cdd:COG3420    245 ESSDSVIEGNTI-SGNGKGIF 264
PA14 super family cl08459
PA14 domain; This domain forms an insert in bacterial beta-glucosidases and is found in other ...
 354-443 1.01e-04

PA14 domain; This domain forms an insert in bacterial beta-glucosidases and is found in other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium prespore-cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding.


The actual alignment was detected with superfamily member pfam07691:

Pssm-ID: 471833 [Multi-domain]  Cd Length: 141  Bit Score: 45.05  E-value: 1.01e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395  354 LSAGKQSFSSRLRGFFVAPQTNNYTFWIQADGPASLYLSSSQDPQHkvriaslpagslewsgkWVKNWSESWQPKSQKFE 433
Cdd:pfam07691   39 FGEAPGDFSARWTGYLLPPESGTYTFGVASDDGARLWIDGELVIDN-----------------WGQHPPDASPEESNTLY 101

                           90
                   ....*....|
gi 2024394395  434 LTAGRRYYLE 443
Cdd:pfam07691  102 LVAGKLYPIR 111
TIG pfam01833
IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These ...
 949-1012 3.77e-04

IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. CAUTION: This family does not currently recognize a significant number of members.


:

Pssm-ID: 460355 [Multi-domain]  Cd Length: 84  Bit Score: 41.66  E-value: 3.77e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024394395  949 TVVIRGVGFSEENTTLQVRVKNMTCYVVMSNQTKVVCKMERLPLGVHQLTLLVRPYGFALNAST 1012
Cdd:pfam01833   18 TITITGSNFGTDSSDLKVTIGGTPCTVISVSSTTIVCTTPPGTSGLVNVSVTVGGGGISSSPLT 81
IPT_PCSR cd00603
IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup ...
 21-105 8.00e-04

IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.


:

Pssm-ID: 238337 [Multi-domain]  Cd Length: 90  Bit Score: 40.90  E-value: 8.00e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395   21 IKPREGSVAGGTWITITldGSasheieYLSPASwPHLEVSLVNadlptLPCDVSPvyVDLSPIRCRTRPSPQEGLYYVEV 100
Cdd:cd00603      6 ISPSSGPLSGGTRLTIT--GS------NLGSGS-PRVRVTVGG-----VPCKVLN--VSSTEIVCRTPAAATPGEGPVEV 69


                   ....*
gi 2024394395  101 SFKGR 105
Cdd:cd00603     70 TVDGA 74
TIG pfam01833
IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These ...
 1111-1189 3.42e-03

IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. CAUTION: This family does not currently recognize a significant number of members.


:

Pssm-ID: 460355 [Multi-domain]  Cd Length: 84  Bit Score: 38.97  E-value: 3.42e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2024394395 1111 PAVVSLSRNRSGLAGGQELQIGISSFANYRgSDIKVQIGGMWAQIQAQMDSGLNVTLPALAAGWYNVSVIISGVALASN 1189
Cdd:pfam01833    1 PVITSISPSSGPASGGTTITITGSNFGTDS-SDLKVTIGGTPCTVISVSSTTIVCTTPPGTSGLVNVSVTVGGGGISSS 78
 
Name Accession Description Interval E-value
G8 pfam10162
G8 domain; This domain is found in disease proteins PKHD1 and KIAA1199 and is named G8 after ...
 2730-2853 6.21e-32

G8 domain; This domain is found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix.


Pssm-ID: 462971  Cd Length: 121  Bit Score: 122.33  E-value: 6.21e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 2730 WGGFNcsIPGPGEDVIILPNRTILVDTDLPPLRGLYILGTLEFPTNSSNVLSAACIVVVGGTLNVGSFQHPLErdSKLLV 2809
Cdd:pfam10162    2 WGGGV--VPQPGDNVVIPAGQTVLLDVSSPTLKSLVIQGTLIFDDDKNITLRARYILVQGGRLIIGSEDCPFQ--GKATI 77

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 2024394395 2810 LLRASEgiYCDHLEEISVHPGSIGV--YGKVQIYSSYPEKSWTHLG 2853
Cdd:pfam10162   78 TLHGRP--ELDDDDGPNYGSKVIGVrnGGTLELHGQPPTVTWTKLA 121
G8 pfam10162
G8 domain; This domain is found in disease proteins PKHD1 and KIAA1199 and is named G8 after ...
 1932-2050 5.52e-25

G8 domain; This domain is found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix.


Pssm-ID: 462971  Cd Length: 121  Bit Score: 102.30  E-value: 5.52e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 1932 SWPSGRPPQDGANVTVEAGRTLLLGAATAALHLLHLRgGKLIFTGPGPVELHAHYILISdGGELRVGSSEARFHHRAHIY 2011
Cdd:pfam10162    1 TWGGGVVPQPGDNVVIPAGQTVLLDVSSPTLKSLVIQ-GTLIFDDDKNITLRARYILVQ-GGRLIIGSEDCPFQGKATIT 78

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 2024394395 2012 LYGSLH--SPPLFPYGAKFLAVRN-GTLSIHGWVPKVTFTYL 2050
Cdd:pfam10162   79 LHGRPEldDDDGPNYGSKVIGVRNgGTLELHGQPPTVTWTKL 120
IPT_PCSR cd00603
IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup ...
 1200-1296 9.42e-14

IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.


Pssm-ID: 238337 [Multi-domain]  Cd Length: 90  Bit Score: 69.41  E-value: 9.42e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 1200 EVFSIEPCCGSFLGGTLLTISGLGFSQNRSLVSVSINEQTCLVTRLAEETIWCLTPPATNLSNevsqdVPVRVNMLISNS 1279
Cdd:cd00603      2 VITSISPSSGPLSGGTRLTITGSNLGSGSPRVRVTVGGVPCKVLNVSSTEIVCRTPAAATPGE-----GPVEVTVDGANV 76

                           90
                   ....*....|....*..
gi 2024394395 1280 SLQNVPvakSITFNYQR 1296
Cdd:cd00603     77 SARVLS---NTTFTYVE 90
IPT_PCSR cd00603
IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup ...
 251-304 6.71e-10

IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.


Pssm-ID: 238337 [Multi-domain]  Cd Length: 90  Bit Score: 58.23  E-value: 6.71e-10
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2024394395  251 EIASVFPASGSLAGGTDLTIMGDFF---EQPVRVTAAGVPCKVKRVSPRQIICTTEA 304
Cdd:cd00603      2 VITSISPSSGPLSGGTRLTITGSNLgsgSPRVRVTVGGVPCKVLNVSSTEIVCRTPA 58
IPT_PCSR cd00603
IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup ...
 1388-1452 1.44e-08

IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.


Pssm-ID: 238337 [Multi-domain]  Cd Length: 90  Bit Score: 54.38  E-value: 1.44e-08
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024394395 1388 PRITSIFPSQGSICGGMLLTISGIALRARRDLGQVSLdGNYSCELQSSDNSTIKCMVLPGTHLLP 1452
Cdd:cd00603      1 PVITSISPSSGPLSGGTRLTITGSNLGSGSPRVRVTV-GGVPCKVLNVSSTEIVCRTPAAATPGE 64
TIG pfam01833
IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These ...
 1203-1265 2.58e-08

IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. CAUTION: This family does not currently recognize a significant number of members.


Pssm-ID: 460355 [Multi-domain]  Cd Length: 84  Bit Score: 53.60  E-value: 2.58e-08
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024394395 1203 SIEPCCGSFLGGTLLTISGLGFSQNRSLVSVSINEQTCLVTRLAEETIWCLTPPATNLSNEVS 1265
Cdd:pfam01833    5 SISPSSGPASGGTTITITGSNFGTDSSDLKVTIGGTPCTVISVSSTTIVCTTPPGTSGLVNVS 67
IPT_PCSR cd00603
IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup ...
 1022-1105 6.21e-08

IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.


Pssm-ID: 238337 [Multi-domain]  Cd Length: 90  Bit Score: 52.84  E-value: 6.21e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 1022 PRLVAIEPPRASEIGGLRVALRGTGLEGVNL---VLFGSQPCPVLEdtRSSTQIECKVPSRGAEDAA---VRVTLVSGYQ 1095
Cdd:cd00603      1 PVITSISPSSGPLSGGTRLTITGSNLGSGSPrvrVTVGGVPCKVLN--VSSTEIVCRTPAAATPGEGpveVTVDGANVSA 78

                           90
                   ....*....|
gi 2024394395 1096 STTVTNLFQY 1105
Cdd:cd00603     79 RVLSNTTFTY 88
IPT smart00429
ig-like, plexins, transcription factors;
251-308 6.06e-07

ig-like, plexins, transcription factors;


Pssm-ID: 214657 [Multi-domain]  Cd Length: 90  Bit Score: 49.73  E-value: 6.06e-07
                            10        20        30        40        50        60
                    ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024394395   251 EIASVFPASGSLAGGTDLTIMGDFF----EQPVRVTAAGVPCKVKRVSPRQIICTTEAVDRS 308
Cdd:smart00429    3 VITRISPTSGPVSGGTEITLCGKNLksisVVFVEVGVGEAPCTFSPSSSTAIVCKTPPYHNI 64
IPT_plexin_repeat2 cd01179
Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are ...
 1576-1645 1.45e-06

Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.


Pssm-ID: 238584  Cd Length: 85  Bit Score: 48.76  E-value: 1.45e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024394395 1576 PQVHQFYPQNFSSNGGGLLTFAGAALKGKSRTSVLIGQHPCLILNVTCIAIQCTVPPGN--GTRALRLTVDG 1645
Cdd:cd01179      1 PSITSLSPSYGPQSGGTRLTITGKHLNAGSSVRVTVGGQPCKILSVSSSQIVCLTPPSAspGEAPVKVLIDG 72
TIG pfam01833
IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These ...
 1022-1105 2.98e-06

IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. CAUTION: This family does not currently recognize a significant number of members.


Pssm-ID: 460355 [Multi-domain]  Cd Length: 84  Bit Score: 47.83  E-value: 2.98e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 1022 PRLVAIEPPRASEIGGLRVALRGTGL---EGVNLVLFGSQPCPVLedTRSSTQIECKVPSRGAEDAAVRVTlVSGYQSTT 1098
Cdd:pfam01833    1 PVITSISPSSGPASGGTTITITGSNFgtdSSDLKVTIGGTPCTVI--SVSSTTIVCTTPPGTSGLVNVSVT-VGGGGISS 77


                   ....*..
gi 2024394395 1099 VTNLFQY 1105
Cdd:pfam01833   78 SPLTFTY 84
TIG pfam01833
IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These ...
 1388-1448 5.10e-06

IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. CAUTION: This family does not currently recognize a significant number of members.


Pssm-ID: 460355 [Multi-domain]  Cd Length: 84  Bit Score: 47.06  E-value: 5.10e-06
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2024394395 1388 PRITSIFPSQGSICGGMLLTISGIALRARRDLGQVSLdGNYSCELQSSDNSTIKCMVLPGT 1448
Cdd:pfam01833    1 PVITSISPSSGPASGGTTITITGSNFGTDSSDLKVTI-GGTPCTVISVSSTTIVCTTPPGT 60
IPT smart00429
ig-like, plexins, transcription factors;
1192-1277 8.38e-06

ig-like, plexins, transcription factors;


Pssm-ID: 214657 [Multi-domain]  Cd Length: 90  Bit Score: 46.64  E-value: 8.38e-06
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395  1192 EPLIHyisevfSIEPCCGSFLGGTLLTISG--LGFSQNRSlVSVSINEQTCLVTRLAEETIWCLTPPATNLSNEvsqdVP 1269
Cdd:smart00429    1 DPVIT------RISPTSGPVSGGTEITLCGknLKSISVVF-VEVGVGEAPCTFSPSSSTAIVCKTPPYHNIPGS----VP 69


                    ....*...
gi 2024394395  1270 VRVNMLIS 1277
Cdd:smart00429   70 VRTVGLRN 77
TIG pfam01833
IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These ...
 252-302 1.09e-05

IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. CAUTION: This family does not currently recognize a significant number of members.


Pssm-ID: 460355 [Multi-domain]  Cd Length: 84  Bit Score: 46.29  E-value: 1.09e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 2024394395  252 IASVFPASGSLAGGTDLTIMG-DFFEQP--VRVTAAGVPCKVKRVSPRQIICTT 302
Cdd:pfam01833    3 ITSISPSSGPASGGTTITITGsNFGTDSsdLKVTIGGTPCTVISVSSTTIVCTT 56
TIG pfam01833
IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These ...
 1504-1565 1.47e-05

IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. CAUTION: This family does not currently recognize a significant number of members.


Pssm-ID: 460355 [Multi-domain]  Cd Length: 84  Bit Score: 45.90  E-value: 1.47e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024394395 1504 TDVTIKGQRLAWPGDSPVVHVNDQdVCKVTFWNETIVRCQMDCIAPGDHNISISNRSGQACF 1565
Cdd:pfam01833   17 TTITITGSNFGTDSSDLKVTIGGT-PCTVISVSSTTIVCTTPPGTSGLVNVSVTVGGGGISS 77
NosD COG3420
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
 2279-2426 3.65e-05

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 48.76  E-value: 3.65e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 2279 KGNRIRNNTVIGLSATDGLSNietlspAGIYV-RAPANHIEGNTVCAAGYGYFFHLSPErpskmplLTFSENTAHSCtRH 2357
Cdd:COG3420    129 DNNVIRNNTISGNRDLRADRG------NGIHLwNSPGNVIEGNTISGGRDGIYLEFSDN-------NVIRNNTIRNL-RY 194

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024394395 2358 GLLVYpeylpDSPDGLVQFNSFTvwSSQGGVQIFSSSNLKLQNFRIYACTDFGI---DIIESL--GNTSVANSV 2426
Cdd:COG3420    195 GIHYM-----YSNDNLVEGNTFR--DNGAGIALMYSKGNTVRGNTILGNSGYGIllkESSDSVieGNTISGNGK 261
NosD COG3420
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
 3008-3161 4.95e-05

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 48.37  E-value: 4.95e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 3008 GIKAVMSNGIWLHDNIVFNtVGPGIDLEGKNHSLVRNLIILSRQP------DGLL------NWVA---------GIKVNL 3066
Cdd:COG3420    100 GIYVRGADNAVIENNRIEN-NLFGIYLEGSDNNVIRNNTISGNRDlradrgNGIHlwnspgNVIEgntisggrdGIYLEF 178

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 3067 VIGVSLYGNVVAGSeRVGFHIRgqecfldvdYCSE-----NVAHSNLRGIHLYRGDGfqtcTRITGFLSYKNYDYGMMF- 3140
Cdd:COG3420    179 SDNNVIRNNTIRNL-RYGIHYM---------YSNDnlvegNTFRDNGAGIALMYSKG----NTVRGNTILGNSGYGILLk 244

                          170       180
                   ....*....|....*....|.
gi 2024394395 3141 HLGSSVIIDNVVlVDNTVGLM 3161
Cdd:COG3420    245 ESSDSVIEGNTI-SGNGKGIF 264
PA14 pfam07691
PA14 domain; This domain forms an insert in bacterial beta-glucosidases and is found in other ...
 354-443 1.01e-04

PA14 domain; This domain forms an insert in bacterial beta-glucosidases and is found in other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium prespore-cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding.


Pssm-ID: 400161 [Multi-domain]  Cd Length: 141  Bit Score: 45.05  E-value: 1.01e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395  354 LSAGKQSFSSRLRGFFVAPQTNNYTFWIQADGPASLYLSSSQDPQHkvriaslpagslewsgkWVKNWSESWQPKSQKFE 433
Cdd:pfam07691   39 FGEAPGDFSARWTGYLLPPESGTYTFGVASDDGARLWIDGELVIDN-----------------WGQHPPDASPEESNTLY 101

                           90
                   ....*....|
gi 2024394395  434 LTAGRRYYLE 443
Cdd:pfam07691  102 LVAGKLYPIR 111
IPT smart00429
ig-like, plexins, transcription factors;
1021-1092 1.29e-04

ig-like, plexins, transcription factors;


Pssm-ID: 214657 [Multi-domain]  Cd Length: 90  Bit Score: 43.18  E-value: 1.29e-04
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2024394395  1021 EPRLVAIEPPRASEIGGLRVALRGTGLEGVNLVLF----GSQPCPVLEdtRSSTQIECKVPSRGAEDAAVRVTLVS 1092
Cdd:smart00429    1 DPVITRISPTSGPVSGGTEITLCGKNLKSISVVFVevgvGEAPCTFSP--SSSTAIVCKTPPYHNIPGSVPVRTVG 74
Beta_helix pfam13229
Right handed beta helix region; This region contains a parallel beta helix region that shares ...
 2280-2429 2.10e-04

Right handed beta helix region; This region contains a parallel beta helix region that shares some similarity with Pectate lyases.


Pssm-ID: 463811 [Multi-domain]  Cd Length: 158  Bit Score: 44.32  E-value: 2.10e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 2280 GNRIRNNTVIGLSATdglsnietlspaGIYVR-APANHIEGNTVCAAGYGYFFHLSPERPskmpllTFSENTAHSCTRHG 2358
Cdd:pfam13229   10 NATIKNNTISNNGGY------------GIYLRgSSNATIENNTITNNGGDGIEISGSSNN------TISNNTISNNGGGG 71

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2024394395 2359 LLVYpeylpDSPDGLVQFNSFTvWSSQGGVQIFSSSNLKLQNFRIYACTDFGIDIIESLGNTSVANSVLIG 2429
Cdd:pfam13229   72 IALR-----GSSNNLIENNTIS-NNGGAGIYLSDSSNNTIENNIIHNNGGSGIVIEDSSNNVTISNNTVTN 136
Beta_helix pfam13229
Right handed beta helix region; This region contains a parallel beta helix region that shares ...
 3001-3158 2.20e-04

Right handed beta helix region; This region contains a parallel beta helix region that shares some similarity with Pectate lyases.


Pssm-ID: 463811 [Multi-domain]  Cd Length: 158  Bit Score: 44.32  E-value: 2.20e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 3001 IHGSCGVGIKAVMSNGIWLHDNIVFNTVGPGIDLEGKNHSLVRNLIILSrqpdgllNWVAGIKVNLVIGVSLYGNVVAGS 3080
Cdd:pfam13229   18 ISNNGGYGIYLRGSSNATIENNTITNNGGDGIEISGSSNNTISNNTISN-------NGGGGIALRGSSNNLIENNTISNN 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 3081 ERVGFHIrgqecfldvDYCSENVAHSNL------RGIHLYRGDGFqtcTRITGFLSYKNYDYGMMFHLGSSviidNVVLV 3154
Cdd:pfam13229   91 GGAGIYL---------SDSSNNTIENNIihnnggSGIVIEDSSNN---VTISNNTVTNNKGAGILIVGGSS----NNTVE 154


                   ....
gi 2024394395 3155 DNTV 3158
Cdd:pfam13229  155 NNTF 158
IPT smart00429
ig-like, plexins, transcription factors;
1388-1448 3.05e-04

ig-like, plexins, transcription factors;


Pssm-ID: 214657 [Multi-domain]  Cd Length: 90  Bit Score: 42.02  E-value: 3.05e-04
                            10        20        30        40        50        60
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024394395  1388 PRITSIFPSQGSICGGMLLTISGialrarRDLGQVS------LDGNYSCELQSSDNSTIKCMVLPGT 1448
Cdd:smart00429    2 PVITRISPTSGPVSGGTEITLCG------KNLKSISvvfvevGVGEAPCTFSPSSSTAIVCKTPPYH 62
TIG pfam01833
IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These ...
 949-1012 3.77e-04

IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. CAUTION: This family does not currently recognize a significant number of members.


Pssm-ID: 460355 [Multi-domain]  Cd Length: 84  Bit Score: 41.66  E-value: 3.77e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024394395  949 TVVIRGVGFSEENTTLQVRVKNMTCYVVMSNQTKVVCKMERLPLGVHQLTLLVRPYGFALNAST 1012
Cdd:pfam01833   18 TITITGSNFGTDSSDLKVTIGGTPCTVISVSSTTIVCTTPPGTSGLVNVSVTVGGGGISSSPLT 81
TIG pfam01833
IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These ...
 1576-1655 4.77e-04

IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. CAUTION: This family does not currently recognize a significant number of members.


Pssm-ID: 460355 [Multi-domain]  Cd Length: 84  Bit Score: 41.28  E-value: 4.77e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 1576 PQVHQFYPQNFSSNGGGLLTFAGAALK-GKSRTSVLIGQHPCLILNVTCIAIQCTVPPG-NGTRALRLTVDG--ISYDVG 1651
Cdd:pfam01833    1 PVITSISPSSGPASGGTTITITGSNFGtDSSDLKVTIGGTPCTVISVSSTTIVCTTPPGtSGLVNVSVTVGGggISSSPL 80


                   ....
gi 2024394395 1652 KISY 1655
Cdd:pfam01833   81 TFTY 84
PA14 smart00758
domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, ...
 358-443 7.53e-04

domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins;


Pssm-ID: 214807 [Multi-domain]  Cd Length: 136  Bit Score: 42.39  E-value: 7.53e-04
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395   358 KQSFSSRLRGFFVAPQTNNYTFWIQADGPASLYLSSSQDpqhkvriaslpagslewsgkwVKNWSESWQPK--SQKFELT 435
Cdd:smart00758   41 ADNFSVRWTGYLKPPEDGEYTFSITSDDGARLWIDGKLV---------------------IDNWGKHEARPstSSTLYLL 99


                    ....*...
gi 2024394395   436 AGRRYYLE 443
Cdd:smart00758  100 AGGTYPIR 107
IPT_PCSR cd00603
IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup ...
 21-105 8.00e-04

IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.


Pssm-ID: 238337 [Multi-domain]  Cd Length: 90  Bit Score: 40.90  E-value: 8.00e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395   21 IKPREGSVAGGTWITITldGSasheieYLSPASwPHLEVSLVNadlptLPCDVSPvyVDLSPIRCRTRPSPQEGLYYVEV 100
Cdd:cd00603      6 ISPSSGPLSGGTRLTIT--GS------NLGSGS-PRVRVTVGG-----VPCKVLN--VSSTEIVCRTPAAATPGEGPVEV 69


                   ....*
gi 2024394395  101 SFKGR 105
Cdd:cd00603     70 TVDGA 74
TIG pfam01833
IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These ...
 1111-1189 3.42e-03

IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. CAUTION: This family does not currently recognize a significant number of members.


Pssm-ID: 460355 [Multi-domain]  Cd Length: 84  Bit Score: 38.97  E-value: 3.42e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2024394395 1111 PAVVSLSRNRSGLAGGQELQIGISSFANYRgSDIKVQIGGMWAQIQAQMDSGLNVTLPALAAGWYNVSVIISGVALASN 1189
Cdd:pfam01833    1 PVITSISPSSGPASGGTTITITGSNFGTDS-SDLKVTIGGTPCTVISVSSTTIVCTTPPGTSGLVNVSVTVGGGGISSS 78
 
Name Accession Description Interval E-value
G8 pfam10162
G8 domain; This domain is found in disease proteins PKHD1 and KIAA1199 and is named G8 after ...
 2730-2853 6.21e-32

G8 domain; This domain is found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix.


Pssm-ID: 462971  Cd Length: 121  Bit Score: 122.33  E-value: 6.21e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 2730 WGGFNcsIPGPGEDVIILPNRTILVDTDLPPLRGLYILGTLEFPTNSSNVLSAACIVVVGGTLNVGSFQHPLErdSKLLV 2809
Cdd:pfam10162    2 WGGGV--VPQPGDNVVIPAGQTVLLDVSSPTLKSLVIQGTLIFDDDKNITLRARYILVQGGRLIIGSEDCPFQ--GKATI 77

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 2024394395 2810 LLRASEgiYCDHLEEISVHPGSIGV--YGKVQIYSSYPEKSWTHLG 2853
Cdd:pfam10162   78 TLHGRP--ELDDDDGPNYGSKVIGVrnGGTLELHGQPPTVTWTKLA 121
G8 pfam10162
G8 domain; This domain is found in disease proteins PKHD1 and KIAA1199 and is named G8 after ...
 1932-2050 5.52e-25

G8 domain; This domain is found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix.


Pssm-ID: 462971  Cd Length: 121  Bit Score: 102.30  E-value: 5.52e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 1932 SWPSGRPPQDGANVTVEAGRTLLLGAATAALHLLHLRgGKLIFTGPGPVELHAHYILISdGGELRVGSSEARFHHRAHIY 2011
Cdd:pfam10162    1 TWGGGVVPQPGDNVVIPAGQTVLLDVSSPTLKSLVIQ-GTLIFDDDKNITLRARYILVQ-GGRLIIGSEDCPFQGKATIT 78

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 2024394395 2012 LYGSLH--SPPLFPYGAKFLAVRN-GTLSIHGWVPKVTFTYL 2050
Cdd:pfam10162   79 LHGRPEldDDDGPNYGSKVIGVRNgGTLELHGQPPTVTWTKL 120
IPT_PCSR cd00603
IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup ...
 1200-1296 9.42e-14

IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.


Pssm-ID: 238337 [Multi-domain]  Cd Length: 90  Bit Score: 69.41  E-value: 9.42e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 1200 EVFSIEPCCGSFLGGTLLTISGLGFSQNRSLVSVSINEQTCLVTRLAEETIWCLTPPATNLSNevsqdVPVRVNMLISNS 1279
Cdd:cd00603      2 VITSISPSSGPLSGGTRLTITGSNLGSGSPRVRVTVGGVPCKVLNVSSTEIVCRTPAAATPGE-----GPVEVTVDGANV 76

                           90
                   ....*....|....*..
gi 2024394395 1280 SLQNVPvakSITFNYQR 1296
Cdd:cd00603     77 SARVLS---NTTFTYVE 90
IPT_PCSR cd00603
IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup ...
 251-304 6.71e-10

IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.


Pssm-ID: 238337 [Multi-domain]  Cd Length: 90  Bit Score: 58.23  E-value: 6.71e-10
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2024394395  251 EIASVFPASGSLAGGTDLTIMGDFF---EQPVRVTAAGVPCKVKRVSPRQIICTTEA 304
Cdd:cd00603      2 VITSISPSSGPLSGGTRLTITGSNLgsgSPRVRVTVGGVPCKVLNVSSTEIVCRTPA 58
IPT cd00102
Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as ...
 1200-1294 8.21e-10

Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor receptors), as well as, cyclodextrin glycosyltransferase and similar enzymes. Although they are involved in DNA binding in transcription factors, their function in other proteins is unknown. In these transcription factors, IPTs form homo- or heterodimers with the exception of the nuclear factor of activated Tcells (NFAT) transcription factors which are mainly monomers.


Pssm-ID: 238050 [Multi-domain]  Cd Length: 89  Bit Score: 57.86  E-value: 8.21e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 1200 EVFSIEPCCGSFLGGTLLTISGLGFSQNRSLVsVSI-NEQTCLVTRLAEETIWCLTPPATNLSnevsqdvPVRVNMLISN 1278
Cdd:cd00102      2 VITSISPSSGPVSGGTEVTITGSNFGSGSNLR-VTFgGGVPCSVLSVSSTAIVCTTPPYANPG-------PGPVEVTVDR 73

                           90
                   ....*....|....*.
gi 2024394395 1279 SSlqNVPVAKSITFNY 1294
Cdd:cd00102     74 GN--GGITSSPLTFTY 87
IPT_PCSR cd00603
IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup ...
 1388-1452 1.44e-08

IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.


Pssm-ID: 238337 [Multi-domain]  Cd Length: 90  Bit Score: 54.38  E-value: 1.44e-08
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024394395 1388 PRITSIFPSQGSICGGMLLTISGIALRARRDLGQVSLdGNYSCELQSSDNSTIKCMVLPGTHLLP 1452
Cdd:cd00603      1 PVITSISPSSGPLSGGTRLTITGSNLGSGSPRVRVTV-GGVPCKVLNVSSTEIVCRTPAAATPGE 64
TIG pfam01833
IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These ...
 1203-1265 2.58e-08

IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. CAUTION: This family does not currently recognize a significant number of members.


Pssm-ID: 460355 [Multi-domain]  Cd Length: 84  Bit Score: 53.60  E-value: 2.58e-08
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024394395 1203 SIEPCCGSFLGGTLLTISGLGFSQNRSLVSVSINEQTCLVTRLAEETIWCLTPPATNLSNEVS 1265
Cdd:pfam01833    5 SISPSSGPASGGTTITITGSNFGTDSSDLKVTIGGTPCTVISVSSTTIVCTTPPGTSGLVNVS 67
IPT cd00102
Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as ...
 251-330 2.70e-08

Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor receptors), as well as, cyclodextrin glycosyltransferase and similar enzymes. Although they are involved in DNA binding in transcription factors, their function in other proteins is unknown. In these transcription factors, IPTs form homo- or heterodimers with the exception of the nuclear factor of activated Tcells (NFAT) transcription factors which are mainly monomers.


Pssm-ID: 238050 [Multi-domain]  Cd Length: 89  Bit Score: 53.62  E-value: 2.70e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395  251 EIASVFPASGSLAGGTDLTIMGDFF--EQPVRVT-AAGVPCKVKRVSPRQIICTTEAVdrsrmlGDPQPGNRGLLFEVWD 327
Cdd:cd00102      2 VITSISPSSGPVSGGTEVTITGSNFgsGSNLRVTfGGGVPCSVLSVSSTAIVCTTPPY------ANPGPGPVEVTVDRGN 75


                   ...
gi 2024394395  328 DAS 330
Cdd:cd00102     76 GGI 78
IPT_plexin_repeat2 cd01179
Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are ...
 252-302 3.72e-08

Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.


Pssm-ID: 238584  Cd Length: 85  Bit Score: 53.00  E-value: 3.72e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 2024394395  252 IASVFPASGSLAGGTDLTIMGDFFE--QPVRVTAAGVPCKVKRVSPRQIICTT 302
Cdd:cd01179      3 ITSLSPSYGPQSGGTRLTITGKHLNagSSVRVTVGGQPCKILSVSSSQIVCLT 55
IPT_PCSR cd00603
IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup ...
 1022-1105 6.21e-08

IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.


Pssm-ID: 238337 [Multi-domain]  Cd Length: 90  Bit Score: 52.84  E-value: 6.21e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 1022 PRLVAIEPPRASEIGGLRVALRGTGLEGVNL---VLFGSQPCPVLEdtRSSTQIECKVPSRGAEDAA---VRVTLVSGYQ 1095
Cdd:cd00603      1 PVITSISPSSGPLSGGTRLTITGSNLGSGSPrvrVTVGGVPCKVLN--VSSTEIVCRTPAAATPGEGpveVTVDGANVSA 78

                           90
                   ....*....|
gi 2024394395 1096 STTVTNLFQY 1105
Cdd:cd00603     79 RVLSNTTFTY 88
IPT cd00102
Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as ...
 1388-1481 8.98e-08

Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor receptors), as well as, cyclodextrin glycosyltransferase and similar enzymes. Although they are involved in DNA binding in transcription factors, their function in other proteins is unknown. In these transcription factors, IPTs form homo- or heterodimers with the exception of the nuclear factor of activated Tcells (NFAT) transcription factors which are mainly monomers.


Pssm-ID: 238050 [Multi-domain]  Cd Length: 89  Bit Score: 52.08  E-value: 8.98e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 1388 PRITSIFPSQGSICGGMLLTISGIALRARRDLgQVSLDGNYSCELQSSDNSTIKCMVLPGTHllpyqwwaevSWALNVTV 1467
Cdd:cd00102      1 PVITSISPSSGPVSGGTEVTITGSNFGSGSNL-RVTFGGGVPCSVLSVSSTAIVCTTPPYAN----------PGPGPVEV 69

                           90
                   ....*....|....
gi 2024394395 1468 TVSGISSVCLGDCT 1481
Cdd:cd00102     70 TVDRGNGGITSSPL 83
IPT_plexin_repeat2 cd01179
Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are ...
 1201-1294 3.73e-07

Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.


Pssm-ID: 238584  Cd Length: 85  Bit Score: 50.30  E-value: 3.73e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 1201 VFSIEPCCGSFLGGTLLTISGlGFSQNRSLVSVSINEQTCLVTRLAEETIWCLTPPATNLSnevsqdvPVRVNMLISNSs 1280
Cdd:cd01179      3 ITSLSPSYGPQSGGTRLTITG-KHLNAGSSVRVTVGGQPCKILSVSSSQIVCLTPPSASPG-------EAPVKVLIDGA- 73

                           90
                   ....*....|....
gi 2024394395 1281 lqnvPVAKSITFNY 1294
Cdd:cd01179     74 ----RRLAPLVFTY 83
IPT smart00429
ig-like, plexins, transcription factors;
251-308 6.06e-07

ig-like, plexins, transcription factors;


Pssm-ID: 214657 [Multi-domain]  Cd Length: 90  Bit Score: 49.73  E-value: 6.06e-07
                            10        20        30        40        50        60
                    ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024394395   251 EIASVFPASGSLAGGTDLTIMGDFF----EQPVRVTAAGVPCKVKRVSPRQIICTTEAVDRS 308
Cdd:smart00429    3 VITRISPTSGPVSGGTEITLCGKNLksisVVFVEVGVGEAPCTFSPSSSTAIVCKTPPYHNI 64
IPT_plexin_repeat2 cd01179
Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are ...
 1576-1645 1.45e-06

Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.


Pssm-ID: 238584  Cd Length: 85  Bit Score: 48.76  E-value: 1.45e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024394395 1576 PQVHQFYPQNFSSNGGGLLTFAGAALKGKSRTSVLIGQHPCLILNVTCIAIQCTVPPGN--GTRALRLTVDG 1645
Cdd:cd01179      1 PSITSLSPSYGPQSGGTRLTITGKHLNAGSSVRVTVGGQPCKILSVSSSQIVCLTPPSAspGEAPVKVLIDG 72
TIG pfam01833
IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These ...
 1022-1105 2.98e-06

IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. CAUTION: This family does not currently recognize a significant number of members.


Pssm-ID: 460355 [Multi-domain]  Cd Length: 84  Bit Score: 47.83  E-value: 2.98e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 1022 PRLVAIEPPRASEIGGLRVALRGTGL---EGVNLVLFGSQPCPVLedTRSSTQIECKVPSRGAEDAAVRVTlVSGYQSTT 1098
Cdd:pfam01833    1 PVITSISPSSGPASGGTTITITGSNFgtdSSDLKVTIGGTPCTVI--SVSSTTIVCTTPPGTSGLVNVSVT-VGGGGISS 77


                   ....*..
gi 2024394395 1099 VTNLFQY 1105
Cdd:pfam01833   78 SPLTFTY 84
TIG pfam01833
IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These ...
 1388-1448 5.10e-06

IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. CAUTION: This family does not currently recognize a significant number of members.


Pssm-ID: 460355 [Multi-domain]  Cd Length: 84  Bit Score: 47.06  E-value: 5.10e-06
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2024394395 1388 PRITSIFPSQGSICGGMLLTISGIALRARRDLGQVSLdGNYSCELQSSDNSTIKCMVLPGT 1448
Cdd:pfam01833    1 PVITSISPSSGPASGGTTITITGSNFGTDSSDLKVTI-GGTPCTVISVSSTTIVCTTPPGT 60
IPT smart00429
ig-like, plexins, transcription factors;
1192-1277 8.38e-06

ig-like, plexins, transcription factors;


Pssm-ID: 214657 [Multi-domain]  Cd Length: 90  Bit Score: 46.64  E-value: 8.38e-06
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395  1192 EPLIHyisevfSIEPCCGSFLGGTLLTISG--LGFSQNRSlVSVSINEQTCLVTRLAEETIWCLTPPATNLSNEvsqdVP 1269
Cdd:smart00429    1 DPVIT------RISPTSGPVSGGTEITLCGknLKSISVVF-VEVGVGEAPCTFSPSSSTAIVCKTPPYHNIPGS----VP 69


                    ....*...
gi 2024394395  1270 VRVNMLIS 1277
Cdd:smart00429   70 VRTVGLRN 77
IPT cd00102
Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as ...
 1022-1105 1.00e-05

Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor receptors), as well as, cyclodextrin glycosyltransferase and similar enzymes. Although they are involved in DNA binding in transcription factors, their function in other proteins is unknown. In these transcription factors, IPTs form homo- or heterodimers with the exception of the nuclear factor of activated Tcells (NFAT) transcription factors which are mainly monomers.


Pssm-ID: 238050 [Multi-domain]  Cd Length: 89  Bit Score: 46.30  E-value: 1.00e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 1022 PRLVAIEPPRASEIGGLRVALRGTGL-EGVNL-VLF-GSQPCPVLEdtRSSTQIECKVPS-RGAEDAAVRVTLVSGYQST 1097
Cdd:cd00102      1 PVITSISPSSGPVSGGTEVTITGSNFgSGSNLrVTFgGGVPCSVLS--VSSTAIVCTTPPyANPGPGPVEVTVDRGNGGI 78


                   ....*....
gi 2024394395 1098 TVTNL-FQY 1105
Cdd:cd00102     79 TSSPLtFTY 87
TIG pfam01833
IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These ...
 252-302 1.09e-05

IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. CAUTION: This family does not currently recognize a significant number of members.


Pssm-ID: 460355 [Multi-domain]  Cd Length: 84  Bit Score: 46.29  E-value: 1.09e-05
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 2024394395  252 IASVFPASGSLAGGTDLTIMG-DFFEQP--VRVTAAGVPCKVKRVSPRQIICTT 302
Cdd:pfam01833    3 ITSISPSSGPASGGTTITITGsNFGTDSsdLKVTIGGTPCTVISVSSTTIVCTT 56
TIG pfam01833
IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These ...
 1504-1565 1.47e-05

IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. CAUTION: This family does not currently recognize a significant number of members.


Pssm-ID: 460355 [Multi-domain]  Cd Length: 84  Bit Score: 45.90  E-value: 1.47e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024394395 1504 TDVTIKGQRLAWPGDSPVVHVNDQdVCKVTFWNETIVRCQMDCIAPGDHNISISNRSGQACF 1565
Cdd:pfam01833   17 TTITITGSNFGTDSSDLKVTIGGT-PCTVISVSSTTIVCTTPPGTSGLVNVSVTVGGGGISS 77
NosD COG3420
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
 2279-2426 3.65e-05

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 48.76  E-value: 3.65e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 2279 KGNRIRNNTVIGLSATDGLSNietlspAGIYV-RAPANHIEGNTVCAAGYGYFFHLSPErpskmplLTFSENTAHSCtRH 2357
Cdd:COG3420    129 DNNVIRNNTISGNRDLRADRG------NGIHLwNSPGNVIEGNTISGGRDGIYLEFSDN-------NVIRNNTIRNL-RY 194

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024394395 2358 GLLVYpeylpDSPDGLVQFNSFTvwSSQGGVQIFSSSNLKLQNFRIYACTDFGI---DIIESL--GNTSVANSV 2426
Cdd:COG3420    195 GIHYM-----YSNDNLVEGNTFR--DNGAGIALMYSKGNTVRGNTILGNSGYGIllkESSDSVieGNTISGNGK 261
IPT_plexin_repeat1 cd01180
First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are ...
 251-304 3.76e-05

First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.


Pssm-ID: 238585  Cd Length: 94  Bit Score: 45.00  E-value: 3.76e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024394395  251 EIASVFPASGSLAGGTDLTIMGDFFEQPV-----RVTAAGVPCKV---KRVSPRQIICTTEA 304
Cdd:cd01180      2 VITEFFPLSGPLEGGTRLTICGSNLGLRKndvrhGVRVGGVPCNPeppEYSSSEKIVCTTGP 63
NosD COG3420
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
 3008-3161 4.95e-05

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 48.37  E-value: 4.95e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 3008 GIKAVMSNGIWLHDNIVFNtVGPGIDLEGKNHSLVRNLIILSRQP------DGLL------NWVA---------GIKVNL 3066
Cdd:COG3420    100 GIYVRGADNAVIENNRIEN-NLFGIYLEGSDNNVIRNNTISGNRDlradrgNGIHlwnspgNVIEgntisggrdGIYLEF 178

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 3067 VIGVSLYGNVVAGSeRVGFHIRgqecfldvdYCSE-----NVAHSNLRGIHLYRGDGfqtcTRITGFLSYKNYDYGMMF- 3140
Cdd:COG3420    179 SDNNVIRNNTIRNL-RYGIHYM---------YSNDnlvegNTFRDNGAGIALMYSKG----NTVRGNTILGNSGYGILLk 244

                          170       180
                   ....*....|....*....|.
gi 2024394395 3141 HLGSSVIIDNVVlVDNTVGLM 3161
Cdd:COG3420    245 ESSDSVIEGNTI-SGNGKGIF 264
PA14 pfam07691
PA14 domain; This domain forms an insert in bacterial beta-glucosidases and is found in other ...
 354-443 1.01e-04

PA14 domain; This domain forms an insert in bacterial beta-glucosidases and is found in other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium prespore-cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding.


Pssm-ID: 400161 [Multi-domain]  Cd Length: 141  Bit Score: 45.05  E-value: 1.01e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395  354 LSAGKQSFSSRLRGFFVAPQTNNYTFWIQADGPASLYLSSSQDPQHkvriaslpagslewsgkWVKNWSESWQPKSQKFE 433
Cdd:pfam07691   39 FGEAPGDFSARWTGYLLPPESGTYTFGVASDDGARLWIDGELVIDN-----------------WGQHPPDASPEESNTLY 101

                           90
                   ....*....|
gi 2024394395  434 LTAGRRYYLE 443
Cdd:pfam07691  102 LVAGKLYPIR 111
IPT smart00429
ig-like, plexins, transcription factors;
1021-1092 1.29e-04

ig-like, plexins, transcription factors;


Pssm-ID: 214657 [Multi-domain]  Cd Length: 90  Bit Score: 43.18  E-value: 1.29e-04
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2024394395  1021 EPRLVAIEPPRASEIGGLRVALRGTGLEGVNLVLF----GSQPCPVLEdtRSSTQIECKVPSRGAEDAAVRVTLVS 1092
Cdd:smart00429    1 DPVITRISPTSGPVSGGTEITLCGKNLKSISVVFVevgvGEAPCTFSP--SSSTAIVCKTPPYHNIPGSVPVRTVG 74
Beta_helix pfam13229
Right handed beta helix region; This region contains a parallel beta helix region that shares ...
 2280-2429 2.10e-04

Right handed beta helix region; This region contains a parallel beta helix region that shares some similarity with Pectate lyases.


Pssm-ID: 463811 [Multi-domain]  Cd Length: 158  Bit Score: 44.32  E-value: 2.10e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 2280 GNRIRNNTVIGLSATdglsnietlspaGIYVR-APANHIEGNTVCAAGYGYFFHLSPERPskmpllTFSENTAHSCTRHG 2358
Cdd:pfam13229   10 NATIKNNTISNNGGY------------GIYLRgSSNATIENNTITNNGGDGIEISGSSNN------TISNNTISNNGGGG 71

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2024394395 2359 LLVYpeylpDSPDGLVQFNSFTvWSSQGGVQIFSSSNLKLQNFRIYACTDFGIDIIESLGNTSVANSVLIG 2429
Cdd:pfam13229   72 IALR-----GSSNNLIENNTIS-NNGGAGIYLSDSSNNTIENNIIHNNGGSGIVIEDSSNNVTISNNTVTN 136
Beta_helix pfam13229
Right handed beta helix region; This region contains a parallel beta helix region that shares ...
 3001-3158 2.20e-04

Right handed beta helix region; This region contains a parallel beta helix region that shares some similarity with Pectate lyases.


Pssm-ID: 463811 [Multi-domain]  Cd Length: 158  Bit Score: 44.32  E-value: 2.20e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 3001 IHGSCGVGIKAVMSNGIWLHDNIVFNTVGPGIDLEGKNHSLVRNLIILSrqpdgllNWVAGIKVNLVIGVSLYGNVVAGS 3080
Cdd:pfam13229   18 ISNNGGYGIYLRGSSNATIENNTITNNGGDGIEISGSSNNTISNNTISN-------NGGGGIALRGSSNNLIENNTISNN 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 3081 ERVGFHIrgqecfldvDYCSENVAHSNL------RGIHLYRGDGFqtcTRITGFLSYKNYDYGMMFHLGSSviidNVVLV 3154
Cdd:pfam13229   91 GGAGIYL---------SDSSNNTIENNIihnnggSGIVIEDSSNN---VTISNNTVTNNKGAGILIVGGSS----NNTVE 154


                   ....
gi 2024394395 3155 DNTV 3158
Cdd:pfam13229  155 NNTF 158
IPT smart00429
ig-like, plexins, transcription factors;
1388-1448 3.05e-04

ig-like, plexins, transcription factors;


Pssm-ID: 214657 [Multi-domain]  Cd Length: 90  Bit Score: 42.02  E-value: 3.05e-04
                            10        20        30        40        50        60
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024394395  1388 PRITSIFPSQGSICGGMLLTISGialrarRDLGQVS------LDGNYSCELQSSDNSTIKCMVLPGT 1448
Cdd:smart00429    2 PVITRISPTSGPVSGGTEITLCG------KNLKSISvvfvevGVGEAPCTFSPSSSTAIVCKTPPYH 62
TIG pfam01833
IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These ...
 949-1012 3.77e-04

IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. CAUTION: This family does not currently recognize a significant number of members.


Pssm-ID: 460355 [Multi-domain]  Cd Length: 84  Bit Score: 41.66  E-value: 3.77e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024394395  949 TVVIRGVGFSEENTTLQVRVKNMTCYVVMSNQTKVVCKMERLPLGVHQLTLLVRPYGFALNAST 1012
Cdd:pfam01833   18 TITITGSNFGTDSSDLKVTIGGTPCTVISVSSTTIVCTTPPGTSGLVNVSVTVGGGGISSSPLT 81
TIG pfam01833
IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These ...
 1576-1655 4.77e-04

IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. CAUTION: This family does not currently recognize a significant number of members.


Pssm-ID: 460355 [Multi-domain]  Cd Length: 84  Bit Score: 41.28  E-value: 4.77e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 1576 PQVHQFYPQNFSSNGGGLLTFAGAALK-GKSRTSVLIGQHPCLILNVTCIAIQCTVPPG-NGTRALRLTVDG--ISYDVG 1651
Cdd:pfam01833    1 PVITSISPSSGPASGGTTITITGSNFGtDSSDLKVTIGGTPCTVISVSSTTIVCTTPPGtSGLVNVSVTVGGggISSSPL 80


                   ....
gi 2024394395 1652 KISY 1655
Cdd:pfam01833   81 TFTY 84
IPT_plexin_repeat2 cd01179
Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are ...
 1022-1105 6.36e-04

Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.


Pssm-ID: 238584  Cd Length: 85  Bit Score: 41.06  E-value: 6.36e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 1022 PRLVAIEPPRASEIGGLRVALRGTGLE-GVNL-VLFGSQPCPVLEdtRSSTQIECKVPSrGAEDAAVRVTLVSGYQSTTV 1099
Cdd:cd01179      1 PSITSLSPSYGPQSGGTRLTITGKHLNaGSSVrVTVGGQPCKILS--VSSSQIVCLTPP-SASPGEAPVKVLIDGARRLA 77


                   ....*.
gi 2024394395 1100 TNLFQY 1105
Cdd:cd01179     78 PLVFTY 83
IPT_plexin_repeat1 cd01180
First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are ...
 1022-1105 6.51e-04

First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.


Pssm-ID: 238585  Cd Length: 94  Bit Score: 41.53  E-value: 6.51e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 1022 PRLVAIEPPRASEIGGLRVALRGTGL----EGVNL-VLFGSQPCPVLEDT-RSSTQIECKVPSRG--AEDAAVRVTLVSG 1093
Cdd:cd01180      1 PVITEFFPLSGPLEGGTRLTICGSNLglrkNDVRHgVRVGGVPCNPEPPEySSSEKIVCTTGPAGnpVFNGPVEVTVGHG 80

                           90
                   ....*....|..
gi 2024394395 1094 YQSTTVTNLFQY 1105
Cdd:cd01180     81 SFRTESSEGFSF 92
IPT_plexin_repeat2 cd01179
Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are ...
 1388-1448 7.44e-04

Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.


Pssm-ID: 238584  Cd Length: 85  Bit Score: 41.06  E-value: 7.44e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2024394395 1388 PRITSIFPSQGSICGGMLLTISGIALRARRDLgQVSLDGnYSCELQSSDNSTIKCMVLPGT 1448
Cdd:cd01179      1 PSITSLSPSYGPQSGGTRLTITGKHLNAGSSV-RVTVGG-QPCKILSVSSSQIVCLTPPSA 59
PA14 smart00758
domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, ...
 358-443 7.53e-04

domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins;


Pssm-ID: 214807 [Multi-domain]  Cd Length: 136  Bit Score: 42.39  E-value: 7.53e-04
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395   358 KQSFSSRLRGFFVAPQTNNYTFWIQADGPASLYLSSSQDpqhkvriaslpagslewsgkwVKNWSESWQPK--SQKFELT 435
Cdd:smart00758   41 ADNFSVRWTGYLKPPEDGEYTFSITSDDGARLWIDGKLV---------------------IDNWGKHEARPstSSTLYLL 99


                    ....*...
gi 2024394395   436 AGRRYYLE 443
Cdd:smart00758  100 AGGTYPIR 107
IPT_PCSR cd00603
IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup ...
 21-105 8.00e-04

IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.


Pssm-ID: 238337 [Multi-domain]  Cd Length: 90  Bit Score: 40.90  E-value: 8.00e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395   21 IKPREGSVAGGTWITITldGSasheieYLSPASwPHLEVSLVNadlptLPCDVSPvyVDLSPIRCRTRPSPQEGLYYVEV 100
Cdd:cd00603      6 ISPSSGPLSGGTRLTIT--GS------NLGSGS-PRVRVTVGG-----VPCKVLN--VSSTEIVCRTPAAATPGEGPVEV 69


                   ....*
gi 2024394395  101 SFKGR 105
Cdd:cd00603     70 TVDGA 74
Beta_helix pfam13229
Right handed beta helix region; This region contains a parallel beta helix region that shares ...
 2279-2427 1.14e-03

Right handed beta helix region; This region contains a parallel beta helix region that shares some similarity with Pectate lyases.


Pssm-ID: 463811 [Multi-domain]  Cd Length: 158  Bit Score: 42.39  E-value: 1.14e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 2279 KGNRIRNNTVIGLSATDG------LSNIETLSPAGIYVRAPANH-IEGNTV--CAAGYGYFFHLSPerpskmplLTFSEN 2349
Cdd:pfam13229   14 KNNTISNNGGYGIYLRGSsnatieNNTITNNGGDGIEISGSSNNtISNNTIsnNGGGGIALRGSSN--------NLIENN 85

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2024394395 2350 TAHSCTRHGLLVYpeylpDSPDGLVQFNSFTVWSSQGGVQIFSSSNLKLQNFRIYACTDFGIDIIESLGNTSVANSVL 2427
Cdd:pfam13229   86 TISNNGGAGIYLS-----DSSNNTIENNIIHNNGGSGIVIEDSSNNVTISNNTVTNNKGAGILIVGGSSNNTVENNTF 158
IPT_PCSR cd00603
IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup ...
 1576-1654 1.66e-03

IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.


Pssm-ID: 238337 [Multi-domain]  Cd Length: 90  Bit Score: 40.13  E-value: 1.66e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 1576 PQVHQFYPQNFSSNGGGLLTFAGAAL-KGKSRTSVLIGQHPCLILNVTCIAIQCTVPPGN--GTRALRLTVDGISYDVGK 1652
Cdd:cd00603      1 PVITSISPSSGPLSGGTRLTITGSNLgSGSPRVRVTVGGVPCKVLNVSSTEIVCRTPAAAtpGEGPVEVTVDGANVSARV 80


                   ..
gi 2024394395 1653 IS 1654
Cdd:cd00603     81 LS 82
TIG pfam01833
IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These ...
 1111-1189 3.42e-03

IPT/TIG domain; This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. CAUTION: This family does not currently recognize a significant number of members.


Pssm-ID: 460355 [Multi-domain]  Cd Length: 84  Bit Score: 38.97  E-value: 3.42e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2024394395 1111 PAVVSLSRNRSGLAGGQELQIGISSFANYRgSDIKVQIGGMWAQIQAQMDSGLNVTLPALAAGWYNVSVIISGVALASN 1189
Cdd:pfam01833    1 PVITSISPSSGPASGGTTITITGSNFGTDS-SDLKVTIGGTPCTVISVSSTTIVCTTPPGTSGLVNVSVTVGGGGISSS 78
IPT_plexin_repeat3 cd01181
Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are ...
 1201-1294 7.51e-03

Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.


Pssm-ID: 238586  Cd Length: 99  Bit Score: 38.55  E-value: 7.51e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 1201 VFSIEPCcGSFL-GGTLLTISGLGFS--QNRSLVS--VSINEQTCLVtrLAEETIWCLTPPATNLsNEVSQDVPVRVNML 1275
Cdd:cd01181      3 ITRIEPE-WSFLsGGTPITVTGTNLNtvQEPRIRVkyGGVEKTSCKV--RNSTLMTCPAPSLALL-NRSPEPGERPVEFG 78

                           90
                   ....*....|....*....
gi 2024394395 1276 ISNSSLQNVPVAKSITFNY 1294
Cdd:cd01181     79 LDGDNVQSLLILNRTSFSY 97
IPT_plexin_repeat1 cd01180
First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are ...
 1388-1442 9.71e-03

First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.


Pssm-ID: 238585  Cd Length: 94  Bit Score: 38.07  E-value: 9.71e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024394395 1388 PRITSIFPSQGSICGGMLLTISGIAL--RARRDLGQVSLdGNYSCELQ---SSDNSTIKC 1442
Cdd:cd01180      1 PVITEFFPLSGPLEGGTRLTICGSNLglRKNDVRHGVRV-GGVPCNPEppeYSSSEKIVC 59
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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