NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2024412791|ref|XP_040557635|]
View 

USP6 N-terminal-like protein isoform X1 [Gallus gallus]

Protein Classification

TBC domain-containing protein( domain architecture ID 10640016)

TBC (Tre-2/Bub2/Cdc1) domain-containing protein may function as a GTPase activator protein of Rab-like small GTPases

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
TBC smart00164
Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and ...
96-302 3.83e-61

Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.


:

Pssm-ID: 214540 [Multi-domain]  Cd Length: 216  Bit Score: 204.46  E-value: 3.83e-61
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791   96 VYKGIPLQVRGQVWSLLLDVEKMK-KENEGKYEQMKQQ-AKSWSSEIKQIDLDVNRTFRNHIMFRDRYGVKQQALFHVLS 173
Cdd:smart00164   1 VRKGVPPSLRGVVWKLLLNAQPMDtSADKDLYSRLLKEtAPDDKSIVHQIEKDLRRTFPEHSFFQDKEGPGQESLRRVLK 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791  174 AYSVYNTEVSYCQGMSQIAAILLMYL-NEEDAFWALAQLLtnqKHAMHGFFIPGFPKLQRFQAHHEQILSKLFPKLKKHM 252
Cdd:smart00164  81 AYALYNPEVGYCQGMNFLAAPLLLVMeDEEDAFWCLVKLM---ERYGPNFYLPDMSGLQLDLLQLDRLVKEYDPDLYKHL 157
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|
gi 2024412791  253 DKEQMTTGIYTTKWFLQCFIDRTPFTLTLRLWDIYILEGERVLTAMAYTI 302
Cdd:smart00164 158 KDLGITPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGSDFLFRVALAL 207
PHA03307 super family cl33723
transcriptional regulator ICP4; Provisional
356-555 5.37e-06

transcriptional regulator ICP4; Provisional


The actual alignment was detected with superfamily member PHA03307:

Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 50.17  E-value: 5.37e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791  356 PPPAKPDEFPRKPLGLELSLNPLATKANAAANGQNGLLGeHPSDRGTAQPPSHQGTAARTPDVPGSQAHEAADSH--PHP 433
Cdd:PHA03307   127 PPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASD-AASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAaaSPR 205
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791  434 PQSEGQPTEDVAQRQSPKPSEMQAFPASLEDAVGSGEPTLNAGHGVEHDDHREPHHKPPSPTPSLCSSVGS-----FHPA 508
Cdd:PHA03307   206 PPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNgpssrPGPA 285
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*..
gi 2024412791  509 SNAPVDAPAGEAQPPEQPSSMDHTPDPAACGPSEDQQASSLPGEEAT 555
Cdd:PHA03307   286 SSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSS 332
 
Name Accession Description Interval E-value
TBC smart00164
Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and ...
96-302 3.83e-61

Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.


Pssm-ID: 214540 [Multi-domain]  Cd Length: 216  Bit Score: 204.46  E-value: 3.83e-61
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791   96 VYKGIPLQVRGQVWSLLLDVEKMK-KENEGKYEQMKQQ-AKSWSSEIKQIDLDVNRTFRNHIMFRDRYGVKQQALFHVLS 173
Cdd:smart00164   1 VRKGVPPSLRGVVWKLLLNAQPMDtSADKDLYSRLLKEtAPDDKSIVHQIEKDLRRTFPEHSFFQDKEGPGQESLRRVLK 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791  174 AYSVYNTEVSYCQGMSQIAAILLMYL-NEEDAFWALAQLLtnqKHAMHGFFIPGFPKLQRFQAHHEQILSKLFPKLKKHM 252
Cdd:smart00164  81 AYALYNPEVGYCQGMNFLAAPLLLVMeDEEDAFWCLVKLM---ERYGPNFYLPDMSGLQLDLLQLDRLVKEYDPDLYKHL 157
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|
gi 2024412791  253 DKEQMTTGIYTTKWFLQCFIDRTPFTLTLRLWDIYILEGERVLTAMAYTI 302
Cdd:smart00164 158 KDLGITPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGSDFLFRVALAL 207
RabGAP-TBC pfam00566
Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are ...
136-294 1.80e-55

Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases.


Pssm-ID: 459855  Cd Length: 178  Bit Score: 187.85  E-value: 1.80e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 136 WSSeikQIDLDVNRTFRNHIMFRDRYGvkQQALFHVLSAYSVYNTEVSYCQGMSQIAAILLM-YLNEEDAFWALAQLLTN 214
Cdd:pfam00566   8 WPE---QIEKDVPRTFPHSFFFDNGPG--QNSLRRILKAYSIYNPDVGYCQGMNFIAAPLLLvYLDEEDAFWCFVSLLEN 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 215 QKhaMHGFFIPGFPKLQRFQAHHEQILSKLFPKLKKHMDKEQMTTGIYTTKWFLQCFIDRTPFTLTLRLWDIYILEGERV 294
Cdd:pfam00566  83 YL--LRDFYTPDFPGLKRDLYVFEELLKKKLPKLYKHLKELGLDPDLFASQWFLTLFAREFPLSTVLRIWDYFFLEGEKF 160
COG5210 COG5210
GTPase-activating protein [General function prediction only];
51-302 2.63e-47

GTPase-activating protein [General function prediction only];


Pssm-ID: 227535 [Multi-domain]  Cd Length: 496  Bit Score: 175.38  E-value: 2.63e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791  51 HEQELPTRTALEEKQKQQEIERVDKWLKMLKKWGKYR---NSDKMCRRVYKGIPLQVRGQVWSLLLDVEKMKKENEGKYE 127
Cdd:COG5210   161 KEINELSLKEEPQKLRYYELAADKLWISYLDPNPLSFlpvQLSKLRELIRKGIPNELRGDVWEFLLGIGFDLDKNPGLYE 240
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 128 Q----MKQQAKSWSSEIKQIDLDVNRTFRNHIMFRDRYGVKQQALFHVLSAYSVYNTEVSYCQGMSQIAAILLMYL-NEE 202
Cdd:COG5210   241 RllnlHREAKIPTQEIISQIEKDLSRTFPDNSLFQTEISIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLeSEE 320
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 203 DAFWALAQLLtnQKHAMHGFFIPGFPKLQRFQAHHEQILSKLFPKLKKHMDKEQMTTGIYTTKWFLQCFIDRTPFTLTLR 282
Cdd:COG5210   321 QAFWCLVKLL--KNYGLPGYFLKNLSGLHRDLKVLDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALR 398
                         250       260
                  ....*....|....*....|
gi 2024412791 283 LWDIYILEGERVLTAMAYTI 302
Cdd:COG5210   399 IWDCLFLEGSSMLFQLALAI 418
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
356-555 5.37e-06

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 50.17  E-value: 5.37e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791  356 PPPAKPDEFPRKPLGLELSLNPLATKANAAANGQNGLLGeHPSDRGTAQPPSHQGTAARTPDVPGSQAHEAADSH--PHP 433
Cdd:PHA03307   127 PPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASD-AASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAaaSPR 205
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791  434 PQSEGQPTEDVAQRQSPKPSEMQAFPASLEDAVGSGEPTLNAGHGVEHDDHREPHHKPPSPTPSLCSSVGS-----FHPA 508
Cdd:PHA03307   206 PPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNgpssrPGPA 285
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*..
gi 2024412791  509 SNAPVDAPAGEAQPPEQPSSMDHTPDPAACGPSEDQQASSLPGEEAT 555
Cdd:PHA03307   286 SSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSS 332
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
355-551 3.86e-04

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 43.99  E-value: 3.86e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 355 LPPPAKPDEFPRKPLGLELSLNPLATKANAAANGQNGLlgEHPsdrGTAQP--PSHQGTAARTPDVPGSQAHEAADSHPH 432
Cdd:pfam03154 252 MTQPPPPSQVSPQPLPQPSLHGQMPPMPHSLQTGPSHM--QHP---VPPQPfpLTPQSSQSQVPPGPSPAAPGQSQQRIH 326
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 433 PPQSEGQPTEDVAQRQSPKPSEMQAFPaSLEDAVGSGEPTLNAGHGVEHDDH-------REPHHKPPSPTPSLCSSVGSF 505
Cdd:pfam03154 327 TPPSQSQLQSQQPPREQPLPPAPLSMP-HIKPPPTTPIPQLPNPQSHKHPPHlsgpspfQMNSNLPPPPALKPLSSLSTH 405
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2024412791 506 HPASNAPVD---APAGE--AQPPEQPSSMDHTPDPAACGPSEDQQASSLPG 551
Cdd:pfam03154 406 HPPSAHPPPlqlMPQSQqlPPPPAQPPVLTQSQSLPPPAASHPPTSGLHQV 456
 
Name Accession Description Interval E-value
TBC smart00164
Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and ...
96-302 3.83e-61

Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.


Pssm-ID: 214540 [Multi-domain]  Cd Length: 216  Bit Score: 204.46  E-value: 3.83e-61
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791   96 VYKGIPLQVRGQVWSLLLDVEKMK-KENEGKYEQMKQQ-AKSWSSEIKQIDLDVNRTFRNHIMFRDRYGVKQQALFHVLS 173
Cdd:smart00164   1 VRKGVPPSLRGVVWKLLLNAQPMDtSADKDLYSRLLKEtAPDDKSIVHQIEKDLRRTFPEHSFFQDKEGPGQESLRRVLK 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791  174 AYSVYNTEVSYCQGMSQIAAILLMYL-NEEDAFWALAQLLtnqKHAMHGFFIPGFPKLQRFQAHHEQILSKLFPKLKKHM 252
Cdd:smart00164  81 AYALYNPEVGYCQGMNFLAAPLLLVMeDEEDAFWCLVKLM---ERYGPNFYLPDMSGLQLDLLQLDRLVKEYDPDLYKHL 157
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|
gi 2024412791  253 DKEQMTTGIYTTKWFLQCFIDRTPFTLTLRLWDIYILEGERVLTAMAYTI 302
Cdd:smart00164 158 KDLGITPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGSDFLFRVALAL 207
RabGAP-TBC pfam00566
Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are ...
136-294 1.80e-55

Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases.


Pssm-ID: 459855  Cd Length: 178  Bit Score: 187.85  E-value: 1.80e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 136 WSSeikQIDLDVNRTFRNHIMFRDRYGvkQQALFHVLSAYSVYNTEVSYCQGMSQIAAILLM-YLNEEDAFWALAQLLTN 214
Cdd:pfam00566   8 WPE---QIEKDVPRTFPHSFFFDNGPG--QNSLRRILKAYSIYNPDVGYCQGMNFIAAPLLLvYLDEEDAFWCFVSLLEN 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 215 QKhaMHGFFIPGFPKLQRFQAHHEQILSKLFPKLKKHMDKEQMTTGIYTTKWFLQCFIDRTPFTLTLRLWDIYILEGERV 294
Cdd:pfam00566  83 YL--LRDFYTPDFPGLKRDLYVFEELLKKKLPKLYKHLKELGLDPDLFASQWFLTLFAREFPLSTVLRIWDYFFLEGEKF 160
COG5210 COG5210
GTPase-activating protein [General function prediction only];
51-302 2.63e-47

GTPase-activating protein [General function prediction only];


Pssm-ID: 227535 [Multi-domain]  Cd Length: 496  Bit Score: 175.38  E-value: 2.63e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791  51 HEQELPTRTALEEKQKQQEIERVDKWLKMLKKWGKYR---NSDKMCRRVYKGIPLQVRGQVWSLLLDVEKMKKENEGKYE 127
Cdd:COG5210   161 KEINELSLKEEPQKLRYYELAADKLWISYLDPNPLSFlpvQLSKLRELIRKGIPNELRGDVWEFLLGIGFDLDKNPGLYE 240
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 128 Q----MKQQAKSWSSEIKQIDLDVNRTFRNHIMFRDRYGVKQQALFHVLSAYSVYNTEVSYCQGMSQIAAILLMYL-NEE 202
Cdd:COG5210   241 RllnlHREAKIPTQEIISQIEKDLSRTFPDNSLFQTEISIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLeSEE 320
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 203 DAFWALAQLLtnQKHAMHGFFIPGFPKLQRFQAHHEQILSKLFPKLKKHMDKEQMTTGIYTTKWFLQCFIDRTPFTLTLR 282
Cdd:COG5210   321 QAFWCLVKLL--KNYGLPGYFLKNLSGLHRDLKVLDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALR 398
                         250       260
                  ....*....|....*....|
gi 2024412791 283 LWDIYILEGERVLTAMAYTI 302
Cdd:COG5210   399 IWDCLFLEGSSMLFQLALAI 418
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
356-555 5.37e-06

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 50.17  E-value: 5.37e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791  356 PPPAKPDEFPRKPLGLELSLNPLATKANAAANGQNGLLGeHPSDRGTAQPPSHQGTAARTPDVPGSQAHEAADSH--PHP 433
Cdd:PHA03307   127 PPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASD-AASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAaaSPR 205
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791  434 PQSEGQPTEDVAQRQSPKPSEMQAFPASLEDAVGSGEPTLNAGHGVEHDDHREPHHKPPSPTPSLCSSVGS-----FHPA 508
Cdd:PHA03307   206 PPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNgpssrPGPA 285
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*..
gi 2024412791  509 SNAPVDAPAGEAQPPEQPSSMDHTPDPAACGPSEDQQASSLPGEEAT 555
Cdd:PHA03307   286 SSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSS 332
PHA03247 PHA03247
large tegument protein UL36; Provisional
356-740 1.21e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.17  E-value: 1.21e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791  356 PPPAKPDEFPRKPLGLELSLNPLATKANAAANGQNGLLGEHPSDRGTAQPPSHQGTAARTPDVPGSQAHEAADSHPHPPQ 435
Cdd:PHA03247  2626 PPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPP 2705
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791  436 SEGQPTEDVAQRQSPKP----SEMQAFPASLEDAVGSGEPTLNAGHGVEHDDHREPHHK-PPSPTPSlCSSVGSFHPASN 510
Cdd:PHA03247  2706 PTPEPAPHALVSATPLPpgpaAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAgPPAPAPP-AAPAAGPPRRLT 2784
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791  511 APVDAPAGEAQPpEQPSSMDHTPDPAACGPSedqqASSLPGEEATAlhrdipedigetqhgvlllNGMDSKASLPKSASA 590
Cdd:PHA03247  2785 RPAVASLSESRE-SLPSPWDPADPPAAVLAP----AAALPPAASPA-------------------GPLPPPTSAQPTAPP 2840
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791  591 GELGGLQQSTEMAleqgftalGSLAPCRPSGSSTPilSESVALARGNSLHTVVKTTTRLHVAQVTEQdlanrrqVALPWP 670
Cdd:PHA03247  2841 PPPGPPPPSLPLG--------GSVAPGGDVRRRPP--SRSPAAKPAAPARPPVRRLARPAVSRSTES-------FALPPD 2903
                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791  671 EAAHPLAATSLLPPATSDTGAVQQGTQKPLNALKAPRPPLSPKPKLPPQVSKSLSENNFSPGSLPPARLP 740
Cdd:PHA03247  2904 QPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVA 2973
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
394-554 1.27e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 48.83  E-value: 1.27e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 394 GEHPSDRGTAQPPSHQGTAARTPDVPGSQAHEAADSHPHPPQSEGQPTEdvaqrQSPKPSEMQAFPASLEDAVGSGEPTL 473
Cdd:PRK07764  590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAE-----ASAAPAPGVAAPEHHPKHVAVPDASD 664
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 474 NAGHGVEHDDHREPHHKPPSPTPSlcssvgsfHPASNAPVDAPAGEAQPPEQPSSmDHTPDPAACGPSEDQQASSLPGEE 553
Cdd:PRK07764  665 GGDGWPAKAGGAAPAAPPPAPAPA--------APAAPAGAAPAQPAPAPAATPPA-GQADDPAAQPPQAAQGASAPSPAA 735

                  .
gi 2024412791 554 A 554
Cdd:PRK07764  736 D 736
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
377-541 5.37e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 46.77  E-value: 5.37e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 377 PLATKANAAANGQNGLLGEHPSDRGTAQPPSHQGTAARTPDVPgsqahEAADSHPHPPQSEGQPTEDVAQRQS-PKPSEM 455
Cdd:PRK07003  381 PAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRA-----EAPPAAPAPPATADRGDDAADGDAPvPAKANA 455
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 456 QAFPASLEDAVGSGEPTLNAGHGVEHDDHREPHHKPPSPTPSLCSSVGSFHPASNAPVDAPA--GEAQPPEQPSSMDHTP 533
Cdd:PRK07003  456 RASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASreDAPAAAAPPAPEARPP 535

                  ....*...
gi 2024412791 534 DPAACGPS 541
Cdd:PRK07003  536 TPAAAAPA 543
PHA03169 PHA03169
hypothetical protein; Provisional
382-533 1.08e-04

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 45.35  E-value: 1.08e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 382 ANAAANGQNGLLGEHPSDRGTAQPPSHQGTAARTPDVPGSQAHEAADSHPHPPQSEGQP-TEDVAQRQSPKPSEMQAFPA 460
Cdd:PHA03169  129 ESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPdSPGPPQSETPTSSPPPQSPP 208
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 461 SLEDAVGS----GEPTLNAGHGVEHDDHREPHHK--PPSPTPSLCS-SVGSFHPASNAP---------VDAPAGEAQPPE 524
Cdd:PHA03169  209 DEPGEPQSptpqQAPSPNTQQAVEHEDEPTEPERegPPFPGHRSHSyTVVGWKPSTRPGgvpklclrcTSHPSHRSRLPE 288

                  ....*....
gi 2024412791 525 QPSSMDHTP 533
Cdd:PHA03169  289 GQQSEDKVP 297
dnaA PRK14086
chromosomal replication initiator protein DnaA;
359-560 3.75e-04

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 44.05  E-value: 3.75e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 359 AKPDEFPRKPLglELSLNPLATKANAAANGQNGLLGEHPSDR-GTAQPPSHQGTAARTPD--------VPGSQAHEAADS 429
Cdd:PRK14086   52 AVPNEFAKEVL--EGRLAPIISETLSRELGRPIRIAITVDPSaGEPAPPPPHARRTSEPElprpgrrpYEGYGGPRADDR 129
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 430 HPHPPQSEGQPTEDVAQRQSPKPSEMQAFPASLEDAvgsGEPTLNAGHgVEHDDHREPHHKPPSPTPSLCSSVG--SFHP 507
Cdd:PRK14086  130 PPGLPRQDQLPTARPAYPAYQQRPEPGAWPRAADDY---GWQQQRLGF-PPRAPYASPASYAPEQERDREPYDAgrPEYD 205
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2024412791 508 ASNAPVDAPAGEAQPPEQPSSMDHTPDPAACGPSEDQQASSLPGEEATALHRD 560
Cdd:PRK14086  206 QRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRP 258
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
355-551 3.86e-04

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 43.99  E-value: 3.86e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 355 LPPPAKPDEFPRKPLGLELSLNPLATKANAAANGQNGLlgEHPsdrGTAQP--PSHQGTAARTPDVPGSQAHEAADSHPH 432
Cdd:pfam03154 252 MTQPPPPSQVSPQPLPQPSLHGQMPPMPHSLQTGPSHM--QHP---VPPQPfpLTPQSSQSQVPPGPSPAAPGQSQQRIH 326
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 433 PPQSEGQPTEDVAQRQSPKPSEMQAFPaSLEDAVGSGEPTLNAGHGVEHDDH-------REPHHKPPSPTPSLCSSVGSF 505
Cdd:pfam03154 327 TPPSQSQLQSQQPPREQPLPPAPLSMP-HIKPPPTTPIPQLPNPQSHKHPPHlsgpspfQMNSNLPPPPALKPLSSLSTH 405
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2024412791 506 HPASNAPVD---APAGE--AQPPEQPSSMDHTPDPAACGPSEDQQASSLPG 551
Cdd:pfam03154 406 HPPSAHPPPlqlMPQSQqlPPPPAQPPVLTQSQSLPPPAASHPPTSGLHQV 456
PHA03269 PHA03269
envelope glycoprotein C; Provisional
405-537 6.65e-04

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 43.18  E-value: 6.65e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 405 PPSHQGTAARTPDvPGSQAHEAADSHPHP---PQSEGQPTEDVAQRQSPKPSEmQAFPASLEDAVGSGEPtlnaghgveh 481
Cdd:PHA03269   29 PELHTSAATQKPD-PAPAPHQAASRAPDPavaPTSAASRKPDLAQAPTPAASE-KFDPAPAPHQAASRAP---------- 96
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2024412791 482 DDHREPH-HKPPSPTPSLC-SSVGSFHPAsnaPVDAPAgeaqppeqpSSMDHTPDPAA 537
Cdd:PHA03269   97 DPAVAPQlAAAPKPDAAEAfTSAAQAHEA---PADAGT---------SAASKKPDPAA 142
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
378-554 7.07e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 43.05  E-value: 7.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 378 LATKANAAANGQNGLLGEHPSDRGTAQPPSHQGTAARTPDVPGSQAHEAADSHPHPPQSEGQPTEDVAQRQSPKPSE-MQ 456
Cdd:PRK07764  588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDgGD 667
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 457 AFPASLEDAVGSGE---PTLNAGHGVEHDDHREPHHKPPSPTPSLcssvgsfHPASNAPVDAPAGEAQPPEQPSSMDHTP 533
Cdd:PRK07764  668 GWPAKAGGAAPAAPppaPAPAAPAAPAGAAPAQPAPAPAATPPAG-------QADDPAAQPPQAAQGASAPSPAADDPVP 740
                         170       180
                  ....*....|....*....|.
gi 2024412791 534 DPAAcgPSEDQQASSLPGEEA 554
Cdd:PRK07764  741 LPPE--PDDPPDPAGAPAQPP 759
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
357-691 7.87e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 43.24  E-value: 7.87e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791  357 PPAKPDEFPRKPLGLELSLNPLATKANAAANGQNGllGEHPSDRGTAQPPShqgtaartPDVPGSQAHEAADSHPHPPQS 436
Cdd:PHA03307    71 PPPGPGTEAPANESRSTPTWSLSTLAPASPAREGS--PTPPGPSSPDPPPP--------TPPPASPPPSPAPDLSEMLRP 140
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791  437 EGQPTEDVAQRQSPKPSemqAFPASLEDAVGSGEPTLNAGHGVEHDdhrephHKPPSPTPSLCSSVGSFHPASNAPVdap 516
Cdd:PHA03307   141 VGSPGPPPAASPPAAGA---SPAAVASDAASSRQAALPLSSPEETA------RAPSSPPAEPPPSTPPAAASPRPPR--- 208
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791  517 ageAQPPEQPSSMDHTPDPAacgpseDQQASSLPGEEATALHRDIPE-DIGETQHGVLLLNGMDSKASLPKSASAGELGg 595
Cdd:PHA03307   209 ---RSSPISASASSPAPAPG------RSAADDAGASSSDSSSSESSGcGWGPENECPLPRPAPITLPTRIWEASGWNGP- 278
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791  596 lqqstemaleqgftalGSLAPCRPSGSSTPILSESVALARGNSLHTVVKTTTRLHVAQVTEQDL-ANRRQVALPWPEAAH 674
Cdd:PHA03307   279 ----------------SSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSsSTSSSSESSRGAAVS 342
                          330
                   ....*....|....*..
gi 2024412791  675 PLAATSLLPPATSDTGA 691
Cdd:PHA03307   343 PGPSPSRSPSPSRPPPP 359
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
397-556 1.52e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.90  E-value: 1.52e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 397 PSDRGTAQPPSHQGTAARTPDVPGSQAHEAADSHPHPPQSEGQPTEDVAQRQSPKPSEMQAfPASLEDAVGSGEPTLNAG 476
Cdd:PRK07764  617 APAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAA-PAAPPPAPAPAAPAAPAG 695
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 477 HGVEHDDHRePHHKPPSPTPSLCSSVGSFHPASNAPVDAPAGEAQPPeqPSSMDHTPDPAACGPSEDQQASSLPGEEATA 556
Cdd:PRK07764  696 AAPAQPAPA-PAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPL--PPEPDDPPDPAGAPAQPPPPPAPAPAAAPAA 772
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
356-567 1.84e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.90  E-value: 1.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 356 PPPAKPDEFPRKPLGLELSLNPLATKANAAANGQngllgEHPSDRGTAQPPSHQGTAARTPDVP--GSQAHEAADSHPHP 433
Cdd:PRK07764  591 APGAAGGEGPPAPASSGPPEEAARPAAPAAPAAP-----AAPAPAGAAAAPAEASAAPAPGVAApeHHPKHVAVPDASDG 665
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 434 PQSEGQPTEDVAQRQSPKPSEMQAFPASLEDAVGSGEPTLNAGHGVEHDDHREPHHKPPSPTPSLCSSVGSFH------- 506
Cdd:PRK07764  666 GDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPvplppep 745
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2024412791 507 PASNAPVDAPAGEAQPPEQPSSMDHTPDPAACGPSEDQQASSLPGEEATALHRDIPEDIGE 567
Cdd:PRK07764  746 DDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAEEVAM 806
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
392-667 2.50e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.40  E-value: 2.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 392 LLGEHPSDRGTAQPPSHQGTAARTPDVPGSQAHEAADSHPHPPQSEGQPTEDVA---QRQSPKPSEMQAFPASLEDAVGS 468
Cdd:PRK12323  360 MLAFRPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAaaaRAVAAAPARRSPAPEALAAARQA 439
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 469 GEptlnaghgvehddHREPHHKPPSPTPSlCSSVGSFHPASNAPVDAPAGEAQPPEQPS-SMDHTPDPAACGPSEDqqas 547
Cdd:PRK12323  440 SA-------------RGPGGAPAPAPAPA-AAPAAAARPAAAGPRPVAAAAAAAPARAApAAAPAPADDDPPPWEE---- 501
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 548 sLPGEEATalhrDIPEDIGETQHGVLLLNGMDSKASLPKSASAGELGGLQQSTEMALEQGFTALGSLAPCRPSGSSTPIL 627
Cdd:PRK12323  502 -LPPEFAS----PAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDM 576
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2024412791 628 SE---------------SVALARGNSLHTVVKTTTRLHV--AQVTEQDLANRRQVAL 667
Cdd:PRK12323  577 FDgdwpalaarlpvrglAQQLARQSELAGVEGDTVRLRVpvPALAEAEVVERLQAAL 633
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
356-554 5.20e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.35  E-value: 5.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 356 PPPAKPDEFPRKPLGLELSLNPLATKANAAANGQNGLLGEHPSDRGTAQPPSHQGTAARTPDVPGSQAHEA-ADSHPHPP 434
Cdd:PRK07764  627 PAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAApAQPAPAPA 706
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 435 QSEGQPTEDVAQRQSPKPSEMQAFPASLEDAVGSGEPtlnaghgvEHDDHREPHHKPPSPTPslcssvgsfhPASNAPVD 514
Cdd:PRK07764  707 ATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPP--------EPDDPPDPAGAPAQPPP----------PPAPAPAA 768
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2024412791 515 APAGEAQPPEQPSSMDHTPDPAACGPSEDQQASSLPGEEA 554
Cdd:PRK07764  769 APAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAEEVAMEL 808
AF-4 pfam05110
AF-4 proto-oncoprotein N-terminal region; This family consists of AF4 (Proto-oncogene AF4) and ...
355-586 5.84e-03

AF-4 proto-oncoprotein N-terminal region; This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental retardation syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental retardation. The family also contains a Drosophila AF4 protein homolog Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila.


Pssm-ID: 461550 [Multi-domain]  Cd Length: 514  Bit Score: 39.72  E-value: 5.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 355 LPPPAKPDE--FPRKPLGLELSL---NPLATKANAAANGQNGLLGEHPSDRGTAQPPSHQGTAaRTPDVPGSQAHEAADS 429
Cdd:pfam05110  82 QTPQEKPDQpfFPDKTSGLPPSFhtsSHSQPMGPPSSSSPSVSSSQSQKKSQARTEPAHGGHS-SSGSQSSQRSQGQSRS 160
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 430 HP--------HPPQSEGQPTEDVAQRQSPKPSEMQAFPASLEDAVGSgeptLNAGHGVEHDDHR-----EPHHKPPSPTP 496
Cdd:pfam05110 161 KGgqeshsssHHKRQERREDLFSCASLSHSLEELSPLLSSLSSPVKP----LSPSHSRQHTGSKaqnssDHHGKEYSHSK 236
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 497 SLCSSVGSFHPASNAPVDAPAGEAQPPEQ---------PSSMDHTPdPAACGPSEDQ-QASSlpgeEATALhRDIPEDIG 566
Cdd:pfam05110 237 SPRDSEAGSHGPESPSTSLLASSSQLSSQtfppslpskTSAMQQKP-TAYVRPMDGQdQAPS----ESPEL-KPSPEDYH 310
                         250       260
                  ....*....|....*....|
gi 2024412791 567 ETQHGVLLLNGMDSKASLPK 586
Cdd:pfam05110 311 GQSYGKLSDLKANAKAKLSK 330
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
356-539 6.13e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 39.86  E-value: 6.13e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 356 PPPAKPDEFPRKPLGLELSLNPLATKANAAANGQNGLLGEHPSDRGTAQPPSHQGTAARTPDVPGSQAHEAADSHP-HPP 434
Cdd:PRK12323  385 PAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAaARP 464
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024412791 435 QSEGQPTEDVAQRQSPKPSEMQAFPASLEDAVGSGE---PTLNAGHGVEHDDHREPHHKPPSPTPSLCSSVGSFHPASNA 511
Cdd:PRK12323  465 AAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEelpPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPA 544
                         170       180
                  ....*....|....*....|....*...
gi 2024412791 512 PVDAPAGEAQPPEQPSSMDHTPDPAACG 539
Cdd:PRK12323  545 PAAAPAPRAAAATEPVVAPRPPRASASG 572
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH