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Conserved domains on  [gi|2024417028|ref|XP_040558768|]
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adhesion G protein-coupled receptor A3 [Gallus gallus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
7tmB2_GPR123 cd16000
G protein-coupled receptor 123, member of the class B2 family of seven-transmembrane G ...
745-1057 0e+00

G protein-coupled receptor 123, member of the class B2 family of seven-transmembrane G protein-coupled receptors; GPR123 is an orphan receptor that has been classified as that belongs to the group III of adhesion GPCRs, and also includes orphan receptors GPR124 and GPR125. GPR123 is predominantly expressed in the CNS including thalamus, brain stem and regions containing large pyramidal cells, yet its biological function remains to be determined. Adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. Furthermore, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


:

Pssm-ID: 320666 [Multi-domain]  Cd Length: 275  Bit Score: 584.61  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  745 GEFLHPVVYACTAVMLLCLFASIITYIVHHSTIRISRKGWHMLLNFCFHTALTFAVFAGGINRIKYPIICQAVGIVLHYS 824
Cdd:cd16000      1 GEFLHPVVYACTAVMLLCLFASIITYIVHHSTIRISRKGWHMLLNFCFHTALTFAVFAGGINRTKYPIICQAVGIVLHYS 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  825 TLSTMLWIGVTARNIYKQVTKKTQSCQNGDQPSYPKQPLLRFYLISGGVPFIICGITAATNINNYGIE-GNAPYCWMAWE 903
Cdd:cd16000     81 TLSTMLWIGVTARNIYKQVTKKPHLCQDTDQPPYPKQPLLRFYLVSGGVPFIICGITAATNINNYGTEdEDTPYCWMAWE 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  904 PSLGAFYGPIAFIVLVTCIYFLCTYIQLKRHPERKYELKertedpqrmpstevghshitdaasipqaacsmissslleNE 983
Cdd:cd16000    161 PSLGAFYGPVAFIVLVTCIYFLCTYVQLRRHPERKYELK---------------------------------------NE 201
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024417028  984 HSFKAQLRAAAFTLFLFTATWTFGALAVSQGHFLDMIFSCLYGAFCVTLGLFILIHHCAKRDDVWHCWWSCCPS 1057
Cdd:cd16000    202 HSFKAQLRAAAFTLFLFTATWAFGALAVSQGHFLDMIFSCLYGAFCVTLGLFILIHHCAKRDDVWHCWWSCCPS 275
LRR_8 pfam13855
Leucine rich repeat;
93-151 1.08e-17

Leucine rich repeat;


:

Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 78.34  E-value: 1.08e-17
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 2024417028   93 RSLERLDLKNNLISTIEPGAFHGLSELKRLDLSNNRIGCLTPEMFVGLNSLHKLNLSGN 151
Cdd:pfam13855    1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGN 59
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
64-323 5.02e-15

Leucine-rich repeat (LRR) protein [Transcription];


:

Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 78.82  E-value: 5.02e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028   64 PAVLPNRT--VSLILSNNKILWLKNgSFFGLRSLERLDLKNNLISTIePGAFHGLSELKRLDLSNNRIGCLtPEMFVGLN 141
Cdd:COG4886    152 PEPLGNLTnlKSLDLSNNQLTDLPE-ELGNLTNLKELDLSNNQITDL-PEPLGNLTNLEELDLSGNQLTDL-PEPLANLT 228
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  142 SLHKLNLSGNIFSSLmnglfSELLALKalhfntdslicdcNLKWvLQWARNASVRIAEEtvcaypSALQGLSFRNLKENQ 221
Cdd:COG4886    229 NLETLDLSNNQLTDL-----PELGNLT-------------NLEE-LDLSNNQLTDLPPL------ANLTNLKTLDLSNNQ 283
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  222 L--ICAGPLELPLFELIPSQRQVVFHGDRLPFQCTATYVDKTTQVHWYHAGRLIETDEESGIFVEDSIIHDCCLITRELI 299
Cdd:COG4886    284 LtdLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLL 363
                          250       260
                   ....*....|....*....|....
gi 2024417028  300 LSSIDINASGDWECLVNNSYGNST 323
Cdd:COG4886    364 TLLLTLGLLGLLEATLLTLALLLL 387
GPS pfam01825
GPCR proteolysis site, GPS, motif; The GPS motif is found in GPCRs, and is the site for ...
687-731 3.79e-07

GPCR proteolysis site, GPS, motif; The GPS motif is found in GPCRs, and is the site for auto-proteolysis, so is thus named, GPS. The GPS motif is a conserved sequence of ~40 amino acids containing canonical cysteine and tryptophan residues, and is the most highly conserved part of the domain. In most, if not all, cell-adhesion GPCRs these undergo autoproteolysis in the GPS between a conserved aliphatic residue (usually a leucine) and a threonine, serine, or cysteine residue. In higher eukaryotes this motif is found embedded in the C-terminal beta-stranded part of a GAIN domain - GPCR-Autoproteolysis INducing (GAIN). The GAIN-GPS domain adopts a fold in which the GPS motif, at the C-terminus, forms five beta-strands that are tightly integrated into the overall GAIN domain. The GPS motif, evolutionarily conserved from tetrahymena to mammals, is the only extracellular domain shared by all human cell-adhesion GPCRs and PKD proteins, and is the locus of multiple human disease mutations. The GAIN-GPS domain is both necessary and sufficient functionally for autoproteolysis, suggesting an autoproteolytic mechanism whereby the overall GAIN domain fine-tunes the chemical environment in the GPS to catalyze peptide bond hydrolysis. In the cell-adhesion GPCRs and PKD proteins, the GPS motif is always located at the end of their long N-terminal extracellular regions, immediately before the first transmembrane helix of the respective protein.


:

Pssm-ID: 460350  Cd Length: 44  Bit Score: 47.69  E-value: 3.79e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 2024417028  687 PIAAFWDFDLlDGHGGWWGEGCHIISSAGNITTIQSTHFSNFAVL 731
Cdd:pfam01825    1 PQCVFWDFTN-STTGRWSTEGCTTVSLNDTHTVCSCNHLTSFAVL 44
HRM super family cl02422
Hormone receptor domain; This extracellular domain contains four conserved cysteines that ...
352-402 5.37e-03

Hormone receptor domain; This extracellular domain contains four conserved cysteines that probably for disulphide bridges. The domain is found in a variety of hormone receptors. It may be a ligand binding domain.


The actual alignment was detected with superfamily member pfam02793:

Pssm-ID: 413313  Cd Length: 64  Bit Score: 36.58  E-value: 5.37e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 2024417028  352 WPKTLAGITAYHPCLQYsfnsiaFHNGVEESKAWRKCNRTGRWDE---ENYSEC 402
Cdd:pfam02793   14 WPRTPAGETVEVPCPDY------FSGFDPRGNASRNCTEDGTWSEhppSNYSNC 61
 
Name Accession Description Interval E-value
7tmB2_GPR123 cd16000
G protein-coupled receptor 123, member of the class B2 family of seven-transmembrane G ...
745-1057 0e+00

G protein-coupled receptor 123, member of the class B2 family of seven-transmembrane G protein-coupled receptors; GPR123 is an orphan receptor that has been classified as that belongs to the group III of adhesion GPCRs, and also includes orphan receptors GPR124 and GPR125. GPR123 is predominantly expressed in the CNS including thalamus, brain stem and regions containing large pyramidal cells, yet its biological function remains to be determined. Adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. Furthermore, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320666 [Multi-domain]  Cd Length: 275  Bit Score: 584.61  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  745 GEFLHPVVYACTAVMLLCLFASIITYIVHHSTIRISRKGWHMLLNFCFHTALTFAVFAGGINRIKYPIICQAVGIVLHYS 824
Cdd:cd16000      1 GEFLHPVVYACTAVMLLCLFASIITYIVHHSTIRISRKGWHMLLNFCFHTALTFAVFAGGINRTKYPIICQAVGIVLHYS 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  825 TLSTMLWIGVTARNIYKQVTKKTQSCQNGDQPSYPKQPLLRFYLISGGVPFIICGITAATNINNYGIE-GNAPYCWMAWE 903
Cdd:cd16000     81 TLSTMLWIGVTARNIYKQVTKKPHLCQDTDQPPYPKQPLLRFYLVSGGVPFIICGITAATNINNYGTEdEDTPYCWMAWE 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  904 PSLGAFYGPIAFIVLVTCIYFLCTYIQLKRHPERKYELKertedpqrmpstevghshitdaasipqaacsmissslleNE 983
Cdd:cd16000    161 PSLGAFYGPVAFIVLVTCIYFLCTYVQLRRHPERKYELK---------------------------------------NE 201
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024417028  984 HSFKAQLRAAAFTLFLFTATWTFGALAVSQGHFLDMIFSCLYGAFCVTLGLFILIHHCAKRDDVWHCWWSCCPS 1057
Cdd:cd16000    202 HSFKAQLRAAAFTLFLFTATWAFGALAVSQGHFLDMIFSCLYGAFCVTLGLFILIHHCAKRDDVWHCWWSCCPS 275
LRR_8 pfam13855
Leucine rich repeat;
93-151 1.08e-17

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 78.34  E-value: 1.08e-17
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 2024417028   93 RSLERLDLKNNLISTIEPGAFHGLSELKRLDLSNNRIGCLTPEMFVGLNSLHKLNLSGN 151
Cdd:pfam13855    1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGN 59
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
64-323 5.02e-15

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 78.82  E-value: 5.02e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028   64 PAVLPNRT--VSLILSNNKILWLKNgSFFGLRSLERLDLKNNLISTIePGAFHGLSELKRLDLSNNRIGCLtPEMFVGLN 141
Cdd:COG4886    152 PEPLGNLTnlKSLDLSNNQLTDLPE-ELGNLTNLKELDLSNNQITDL-PEPLGNLTNLEELDLSGNQLTDL-PEPLANLT 228
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  142 SLHKLNLSGNIFSSLmnglfSELLALKalhfntdslicdcNLKWvLQWARNASVRIAEEtvcaypSALQGLSFRNLKENQ 221
Cdd:COG4886    229 NLETLDLSNNQLTDL-----PELGNLT-------------NLEE-LDLSNNQLTDLPPL------ANLTNLKTLDLSNNQ 283
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  222 L--ICAGPLELPLFELIPSQRQVVFHGDRLPFQCTATYVDKTTQVHWYHAGRLIETDEESGIFVEDSIIHDCCLITRELI 299
Cdd:COG4886    284 LtdLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLL 363
                          250       260
                   ....*....|....*....|....
gi 2024417028  300 LSSIDINASGDWECLVNNSYGNST 323
Cdd:COG4886    364 TLLLTLGLLGLLEATLLTLALLLL 387
7tm_2 pfam00002
7 transmembrane receptor (Secretin family); This family is known as Family B, the ...
757-1028 2.06e-12

7 transmembrane receptor (Secretin family); This family is known as Family B, the secretin-receptor family or family 2 of the G-protein-coupled receptors (GCPRs). They have been described in many animal species, but not in plants, fungi or prokaryotes. Three distinct sub-families are recognized. Subfamily B1 contains classical hormone receptors, such as receptors for secretin and glucagon, that are all involved in cAMP-mediated signalling pathways. Subfamily B2 contains receptors with long extracellular N-termini, such as the leukocyte cell-surface antigen CD97; calcium-independent receptors for latrotoxin, and brain-specific angiogenesis inhibitors amongst others. Subfamily B3 includes Methuselah and other Drosophila proteins. Other than the typical seven-transmembrane region, characteriztic structural features include an amino-terminal extracellular domain involved in ligand binding, and an intracellular loop (IC3) required for specific G-protein coupling.


Pssm-ID: 459625 [Multi-domain]  Cd Length: 248  Bit Score: 68.46  E-value: 2.06e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  757 AVMLLCLFASIITYIVHHStIRISRKGWHMllNFCFHTALTFAVFAGGINRIKY--------PIICQAVGIVLHYSTLST 828
Cdd:pfam00002   13 SLSLVALLLAIAIFLLFRK-LHCTRNYIHL--NLFASFILRALLFLVGDAVLFNkqdldhcsWVGCKVVAVFLHYFFLAN 89
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  829 MLWIGVTARNIYKQVTKKTQScqngdqpsyPKQPLLRFYLISGGVPFIICGITAATNINNYgieGNAPYCWMAWE-PSLG 907
Cdd:pfam00002   90 FFWMLVEGLYLYTLLVEVFFS---------ERKYFWWYLLIGWGVPALVVGIWAGVDPKGY---GEDDGCWLSNEnGLWW 157
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  908 AFYGPIAFIVLVTCIYFLCTYIQLKRHPERKYELKERTEDPQRMpstevghshitdaasipqaacsmisssllenehsfk 987
Cdd:pfam00002  158 IIRGPILLIILVNFIIFINIVRILVQKLRETNMGKSDLKQYRRL------------------------------------ 201
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*...
gi 2024417028  988 aqLRAAAFTLFLFTATWTFGALAVSQG-------HFLDMIFSCLYGAF 1028
Cdd:pfam00002  202 --AKSTLLLLPLLGITWVFGLFAFNPEntlrvvfLYLFLILNSFQGFF 247
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
76-182 2.02e-11

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 67.65  E-value: 2.02e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028   76 LSNNKILWL-KNGSFFGLRSLERLDLKNNLISTIePGAFHGLSELKRLDLSNNRIGCLtPEMFVGLNSLHKLNLSGNIFS 154
Cdd:COG4886     95 LTNLTELDLsGNEELSNLTNLESLDLSGNQLTDL-PEELANLTNLKELDLSNNQLTDL-PEPLGNLTNLKSLDLSNNQLT 172
                           90       100
                   ....*....|....*....|....*...
gi 2024417028  155 SlmngLFSELLALKALHfntdSLICDCN 182
Cdd:COG4886    173 D----LPEELGNLTNLK----ELDLSNN 192
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
67-173 5.20e-10

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 60.96  E-value: 5.20e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028   67 LPNRTvSLILSNNKILWLKNgsFFGLRSLERLDLKNNLISTIE---------------------------PGAFHGLSE- 118
Cdd:cd21340     45 LTNLT-HLYLQNNQIEKIEN--LENLVNLKKLYLGGNRISVVEglenltnleelhienqrlppgekltfdPRSLAALSNs 121
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2024417028  119 LKRLDLSNNRIGCLTPemFVGLNSLHKLNLSGNIFSSL--MNGLFSELLALKALHFN 173
Cdd:cd21340    122 LRVLNISGNNIDSLEP--LAPLRNLEQLDASNNQISDLeeLLDLLSSWPSLRELDLT 176
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
89-177 2.85e-07

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 55.24  E-value: 2.85e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028   89 FFGLRSLERLDLKNNLISTIEPGAFHGLSELKRLDLSNNRIGCLTPEMFVGLNSLHKLNLSGNIFSSLMNGLFSELLALK 168
Cdd:PLN00113   471 SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLS 550

                   ....*....
gi 2024417028  169 ALHFNTDSL 177
Cdd:PLN00113   551 QLDLSQNQL 559
GPS pfam01825
GPCR proteolysis site, GPS, motif; The GPS motif is found in GPCRs, and is the site for ...
687-731 3.79e-07

GPCR proteolysis site, GPS, motif; The GPS motif is found in GPCRs, and is the site for auto-proteolysis, so is thus named, GPS. The GPS motif is a conserved sequence of ~40 amino acids containing canonical cysteine and tryptophan residues, and is the most highly conserved part of the domain. In most, if not all, cell-adhesion GPCRs these undergo autoproteolysis in the GPS between a conserved aliphatic residue (usually a leucine) and a threonine, serine, or cysteine residue. In higher eukaryotes this motif is found embedded in the C-terminal beta-stranded part of a GAIN domain - GPCR-Autoproteolysis INducing (GAIN). The GAIN-GPS domain adopts a fold in which the GPS motif, at the C-terminus, forms five beta-strands that are tightly integrated into the overall GAIN domain. The GPS motif, evolutionarily conserved from tetrahymena to mammals, is the only extracellular domain shared by all human cell-adhesion GPCRs and PKD proteins, and is the locus of multiple human disease mutations. The GAIN-GPS domain is both necessary and sufficient functionally for autoproteolysis, suggesting an autoproteolytic mechanism whereby the overall GAIN domain fine-tunes the chemical environment in the GPS to catalyze peptide bond hydrolysis. In the cell-adhesion GPCRs and PKD proteins, the GPS motif is always located at the end of their long N-terminal extracellular regions, immediately before the first transmembrane helix of the respective protein.


Pssm-ID: 460350  Cd Length: 44  Bit Score: 47.69  E-value: 3.79e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 2024417028  687 PIAAFWDFDLlDGHGGWWGEGCHIISSAGNITTIQSTHFSNFAVL 731
Cdd:pfam01825    1 PQCVFWDFTN-STTGRWSTEGCTTVSLNDTHTVCSCNHLTSFAVL 44
PCC TIGR00864
polycystin cation channel protein; The Polycystin Cation Channel (PCC) Family (TC 1.A.5) ...
123-211 1.34e-06

polycystin cation channel protein; The Polycystin Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a huge protein of 4303aas. Its repeated leucine-rich (LRR) segment is found in many proteins. It contains 16 polycystic kidney disease (PKD) domains, one LDL-receptor class A domain, one C-type lectin family domain, and 16-18 putative TMSs in positions between residues 2200 and 4100. Polycystin-L has been shown to be a cation (Na+, K+ and Ca2+) channel that is activated by Ca2+. Two members of the PCC family (polycystin 1 and 2) are mutated in autosomal dominant polycystic kidney disease, and polycystin-L is deleted in mice with renal and retinal defects. Note: this model is restricted to the amino half.


Pssm-ID: 188093 [Multi-domain]  Cd Length: 2740  Bit Score: 53.16  E-value: 1.34e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  123 DLSNNRIGCLTPEMFVGLNSLHKLNLSGNIFSslmnglfsellalkalhfntdsliCDCNLKWVLQWARNASVRIA--EE 200
Cdd:TIGR00864    1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE------------------------CDCGLARLPRWAEEKGVKVRqpEA 56
                           90
                   ....*....|.
gi 2024417028  201 TVCAYPSALQG 211
Cdd:TIGR00864   57 ALCAGPGALAG 67
GPS smart00303
G-protein-coupled receptor proteolytic site domain; Present in latrophilin/CL-1, sea urchin ...
687-733 1.05e-04

G-protein-coupled receptor proteolytic site domain; Present in latrophilin/CL-1, sea urchin REJ and polycystin.


Pssm-ID: 197639  Cd Length: 49  Bit Score: 40.83  E-value: 1.05e-04
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*..
gi 2024417028   687 PIAAFWDFDLldghGGWWGEGCHIISSAGNITTIQSTHFSNFAVLMD 733
Cdd:smart00303    3 PICVFWDESS----GEWSTRGCELLETNGTHTTCSCNHLTTFAVLMD 45
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
69-230 3.28e-04

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 45.22  E-value: 3.28e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028   69 NRTVSLILSNNKILWLKNGSFFGLRSLERLDLKNNLISTIEPGA-FHGLSELKRLDLSNNRIGCLTPEMFVGLnsLHKLN 147
Cdd:PLN00113    69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDiFTTSSSLRYLNLSNNNFTGSIPRGSIPN--LETLD 146
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  148 LSGNIFSSLMN---GLFSellalkalhfntdslicdcNLKwVLQWARNASVriaeETVCAYPSALQGLSFRNLKENQLIC 224
Cdd:PLN00113   147 LSNNMLSGEIPndiGSFS-------------------SLK-VLDLGGNVLV----GKIPNSLTNLTSLEFLTLASNQLVG 202

                   ....*.
gi 2024417028  225 AGPLEL 230
Cdd:PLN00113   203 QIPREL 208
LRR smart00370
Leucine-rich repeats, outliers;
92-115 1.15e-03

Leucine-rich repeats, outliers;


Pssm-ID: 197688 [Multi-domain]  Cd Length: 24  Bit Score: 37.33  E-value: 1.15e-03
                            10        20
                    ....*....|....*....|....
gi 2024417028    92 LRSLERLDLKNNLISTIEPGAFHG 115
Cdd:smart00370    1 LPNLRELDLSNNQLSSLPPGAFQG 24
IgI_Titin_M1-like cd20927
Immunoglobulin-like M1 domain from Titin; a member of the I-set of IgSF domains; The members ...
246-330 1.79e-03

Immunoglobulin-like M1 domain from Titin; a member of the I-set of IgSF domains; The members here are composed of the Immunoglobulin-like M1 I-set domain from Titin and similar proteins. Titin is a key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The Ig superfamily (IgSF) is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. IgSF domains can be divided into 4 main classes based on their structures and sequences: the Variable (V), Constant 1 (C1), Constant 2 (C2), and Intermediate (I) sets. Unlike the V-set, one of the distinctive features of I-set domains is the lack of a C" strand. The structure of the titin-M1 domain lacks this strand and thus it belongs to the I-set of the IgSF. I-set domains are found in several cell adhesion molecules (such as VCAM, ICAM, and MADCAM), and are also present in numerous other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1, and the signaling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis.


Pssm-ID: 409521  Cd Length: 90  Bit Score: 38.86  E-value: 1.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  246 GDRLPFQCTATYVDKTTQVHWYHAGRLIETDEESGIFVEDSIIhdcclitrELILSSIDINASGDWECLVNNSYGNSTKH 325
Cdd:cd20927     14 GGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVA--------ILYVKDITKFDDGTYRCKVVNDYGEDSSY 85

                   ....*
gi 2024417028  326 VEIVV 330
Cdd:cd20927     86 AELFV 90
LRRCT smart00082
Leucine rich repeat C-terminal domain;
177-211 2.26e-03

Leucine rich repeat C-terminal domain;


Pssm-ID: 214507 [Multi-domain]  Cd Length: 51  Bit Score: 37.41  E-value: 2.26e-03
                            10        20        30
                    ....*....|....*....|....*....|....*.
gi 2024417028   177 LICDCNLKWVLQWARNASVR-IAEETVCAYPSALQG 211
Cdd:smart00082    3 FICDCELRWLLRWLQANEHLqDPVDLRCASPSSLRG 38
ig pfam00047
Immunoglobulin domain; Members of the immunoglobulin superfamily are found in hundreds of ...
236-324 4.70e-03

Immunoglobulin domain; Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions.


Pssm-ID: 395002  Cd Length: 86  Bit Score: 37.56  E-value: 4.70e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  236 IPSQRQVVFHGDRLPFQCTATYVDKTTQVHWYHAG-RLIETDEESGIFVEDSIIhdcclitrELILSSIDINASGDWECL 314
Cdd:pfam00047    1 SAPPTVTVLEGDSATLTCSASTGSPGPDVTWSKEGgTLIESLKVKHDNGRTTQS--------SLLISNVTKEDAGTYTCV 72
                           90
                   ....*....|
gi 2024417028  315 VNNSYGNSTK 324
Cdd:pfam00047   73 VNNPGGSATL 82
HRM pfam02793
Hormone receptor domain; This extracellular domain contains four conserved cysteines that ...
352-402 5.37e-03

Hormone receptor domain; This extracellular domain contains four conserved cysteines that probably for disulphide bridges. The domain is found in a variety of hormone receptors. It may be a ligand binding domain.


Pssm-ID: 397086  Cd Length: 64  Bit Score: 36.58  E-value: 5.37e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 2024417028  352 WPKTLAGITAYHPCLQYsfnsiaFHNGVEESKAWRKCNRTGRWDE---ENYSEC 402
Cdd:pfam02793   14 WPRTPAGETVEVPCPDY------FSGFDPRGNASRNCTEDGTWSEhppSNYSNC 61
 
Name Accession Description Interval E-value
7tmB2_GPR123 cd16000
G protein-coupled receptor 123, member of the class B2 family of seven-transmembrane G ...
745-1057 0e+00

G protein-coupled receptor 123, member of the class B2 family of seven-transmembrane G protein-coupled receptors; GPR123 is an orphan receptor that has been classified as that belongs to the group III of adhesion GPCRs, and also includes orphan receptors GPR124 and GPR125. GPR123 is predominantly expressed in the CNS including thalamus, brain stem and regions containing large pyramidal cells, yet its biological function remains to be determined. Adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. Furthermore, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320666 [Multi-domain]  Cd Length: 275  Bit Score: 584.61  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  745 GEFLHPVVYACTAVMLLCLFASIITYIVHHSTIRISRKGWHMLLNFCFHTALTFAVFAGGINRIKYPIICQAVGIVLHYS 824
Cdd:cd16000      1 GEFLHPVVYACTAVMLLCLFASIITYIVHHSTIRISRKGWHMLLNFCFHTALTFAVFAGGINRTKYPIICQAVGIVLHYS 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  825 TLSTMLWIGVTARNIYKQVTKKTQSCQNGDQPSYPKQPLLRFYLISGGVPFIICGITAATNINNYGIE-GNAPYCWMAWE 903
Cdd:cd16000     81 TLSTMLWIGVTARNIYKQVTKKPHLCQDTDQPPYPKQPLLRFYLVSGGVPFIICGITAATNINNYGTEdEDTPYCWMAWE 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  904 PSLGAFYGPIAFIVLVTCIYFLCTYIQLKRHPERKYELKertedpqrmpstevghshitdaasipqaacsmissslleNE 983
Cdd:cd16000    161 PSLGAFYGPVAFIVLVTCIYFLCTYVQLRRHPERKYELK---------------------------------------NE 201
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024417028  984 HSFKAQLRAAAFTLFLFTATWTFGALAVSQGHFLDMIFSCLYGAFCVTLGLFILIHHCAKRDDVWHCWWSCCPS 1057
Cdd:cd16000    202 HSFKAQLRAAAFTLFLFTATWAFGALAVSQGHFLDMIFSCLYGAFCVTLGLFILIHHCAKRDDVWHCWWSCCPS 275
7tmB2_GPR125 cd15999
G protein-coupled receptor 125, member of the class B2 family of seven-transmembrane G ...
746-1056 1.49e-152

G protein-coupled receptor 125, member of the class B2 family of seven-transmembrane G protein-coupled receptors; GPR125 is an orphan receptor that has been classified as that belongs to the group III of adhesion GPCRs, which also includes orphan receptors GPR123 and GPR124. GPR125 directly interacts with dishevelled (Dvl) via its intracellular C-terminus, and together, GPR125 and Dvl recruit a subset of planar cell polarity (PCP) components into membrane subdomains, a prerequisite for activation of Wnt/PCP signaling. Thus, GPR125 influences the noncanonical WNT/PCP pathway, which does not involve beta-catenin, through interacting with and modulating the distribution of Dvl. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. Furthermore, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320665  Cd Length: 312  Bit Score: 461.64  E-value: 1.49e-152
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  746 EFLHPVVYACTAVMLLCLFASIITYIVHHSTIRISRKGWHMLLNFCFHTALTFAVFAGGINRIKYPIICQAVGIVLHYST 825
Cdd:cd15999      2 DLLHPVVYATAVVLLLCLLTIIVSYIYHHSLVRISRKSWHMLVNLCFHIFLTCAVFVGGINQTRNASVCQAVGIILHYST 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  826 LSTMLWIGVTARNIYKQVTKKTQSCQNGDQPSYPKQPLLRFYLISGGVPFIICGITAATNINNYGIEGNAPYCWMAWEPS 905
Cdd:cd15999     82 LATVLWVGVTARNIYKQVTRKAKRCQDPDEPPPPPRPMLRFYLIGGGIPIIVCGITAAANIKNYGSRPNAPYCWMAWEPS 161
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  906 LGAFYGPIAFIVLVTCIYFLCTYIQLKRHPERKYELKERTEDPQRMPSTEVGHSHITDAASiPQAACSMISSSLLENEHS 985
Cdd:cd15999    162 LGAFYGPAGFIIFVNCMYFLSIFIQLKRHPERKYELKEPTEEQQRLAASEHGELNHQDSGS-SSASCSLVSTSALENEHS 240
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024417028  986 FKAQLRAAAFTLFLFTATWTFGALAVSQGHFLDMIFSCLYGAFCVTLGLFILIHHCAKRDDVWHCWW-SCCP 1056
Cdd:cd15999    241 FQAQLLGASLALFLYVALWIFGALAVSLYYPMDLVFSCLFGATCLSLGAFLVVHHCVNREDVRRAWIaTCCP 312
7tmB2_GPR124-like_Adhesion_III cd15259
orphan GPR124 and related proteins, group III adhesion GPCRs, member of class B2 family of ...
745-1055 2.74e-136

orphan GPR124 and related proteins, group III adhesion GPCRs, member of class B2 family of seven-transmembrane G protein-coupled receptors; group III adhesion GPCRs include orphan GPR123, GPR124, GPR125, and their closely related proteins. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. Furthermore, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions. GPR123 is predominantly expressed in the CNS including thalamus, brain stem and regions containing large pyramidal cells. GPR124, also known as tumor endothelial marker 5 (TEM5), is highly expressed in tumor vessels and in the vasculature of the developing embryo. GPR124 is essentially required for proper angiogenic sprouting into neural tissue, CNS-specific vascularization, and formation of the blood-brain barrier. GPR124 also interacts with the PDZ domain of DLG1 (discs large homolog 1) through its PDZ-binding motif. Recently, studies of double-knockout mice showed that GPR124 functions as a co-activator of Wnt7a/Wnt7b-dependent beta-catenin signaling in brain endothelium. Furthermore, WNT7-stimulated beta-catenin signaling is regulated by GPR124's intracellular PDZ binding motif and leucine-rich repeats (LRR) in its N-terminal extracellular domain. GPR125 directly interacts with dishevelled (Dvl) via its intracellular C-terminus, and together, GPR125 and Dvl recruit a subset of planar cell polarity (PCP) components into membrane subdomains, a prerequisite for activation of Wnt/PCP signaling. Thus, GPR125 influences the noncanonical WNT/PCP pathway, which does not involve beta-catenin, through interacting with and modulating the distribution of Dvl.


Pssm-ID: 320387 [Multi-domain]  Cd Length: 260  Bit Score: 416.78  E-value: 2.74e-136
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  745 GEFLHPVVYACTAVMLLCLFASIITYIVHHSTIRISRKGWHMLLNFCFHTALTFAVFAGGINRIKYPIICQAVGIVLHYS 824
Cdd:cd15259      1 FELLHPVVYAGAALCLLCLLATIITYIVFHRLIRISRKGRHMLVNLCLHLLLTCVVFVGGINRTANQLVCQAVGILLHYS 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  825 TLSTMLWIGVTARNIYKQVTKKTQSCQNGDQPSYPKQPLLRFYLISGGVPFIICGITAATNINNYgieGNAPYCWMAWEP 904
Cdd:cd15259     81 TLCTLLWVGVTARNMYKQVTKTAKPPQDEDQPPRPPKPMLRFYLIGWGIPLIICGITAAVNLDNY---STYDYCWLAWDP 157
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  905 SLGAFYGPIAFIVLVTCIYFLCTYIQLKRHPErkyelkertedpqrmpstevghshitdaasipqaacsmissslleneh 984
Cdd:cd15259    158 SLGAFYGPAALIVLVNCIYFLRIYCQLKGAPV------------------------------------------------ 189
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2024417028  985 SFKAQLRAAAFTLFLFTATWTFGALAVSQGHFLDMIFSCLYGAFCVTLGLFILIHHCAKRDDVWHCWWSCC 1055
Cdd:cd15259    190 SFQSQLRGAVITLFLYVAMWACGALAVSQRYFLDLVFSCLYGATCSSLGLFVLIHHCLSREDVRQSWRQCC 260
7tmB2_GPR124 cd15998
G protein-coupled receptor 124, member of the class B2 family of seven-transmembrane G ...
745-1056 1.63e-110

G protein-coupled receptor 124, member of the class B2 family of seven-transmembrane G protein-coupled receptors; GPR124 is an orphan receptor that has been classified as that belongs to the group III of adhesion GPCRs, which also includes orphan GPR123 and GPR125. GPR124, also known as tumor endothelial marker 5 (TEM5), is highly expressed in tumor vessels and in the vasculature of the developing embryo. GPR124 is essentially required for proper angiogenic sprouting into neural tissue, CNS-specific vascularization, and formation of the blood-brain barrier. GPR124 interacts with the PDZ domain of DLG1 (discs large homolog 1) through its PDZ-binding motif. Recently, studies of double-knockout mice showed that GPR124 functions as a co-activator of Wnt7a/Wnt7b-dependent beta-catenin signaling in brain endothelium. Moreover, WNT7-stimulated beta-catenin signaling is regulated by GPR124's intracellular PDZ binding motif and leucine-rich repeats (LRR) in its N-terminal extracellular domain. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. Furthermore, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320664 [Multi-domain]  Cd Length: 268  Bit Score: 348.10  E-value: 1.63e-110
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  745 GEFLHPVVYACTAVMLLCLFASIITYIVHHSTIRISRKGWHMLLNFCFHTALTFAVFAGGINRIKYPIICQAVGIVLHYS 824
Cdd:cd15998      1 GAGLHPVVYPCTALLLLCLFSTIITYILNHSSIHVSRKGWHMLLNLCFHIAMTSAVFAGGITLTNYQMVCQAVGITLHYS 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  825 TLSTMLWIGVTARNIYKQVTKKTQSCQNGDQPSYPKQPLLRFYLISGGVPFIICGITAATNINNYgiEGNAPYCWMAWEP 904
Cdd:cd15998     81 SLSTLLWMGVKARVLHKELTWRAPPPQEGDPALPTPRPMLRFYLIAGGIPLIICGITAAVNIHNY--RDHSPYCWLVWRP 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  905 SLGAFYGPIAFIVLVTCIYFLCTYIQLKrhperkyelkertedpqrmpstevghSHITDAASIpqaacsmissslleneH 984
Cdd:cd15998    159 SLGAFYIPVALILLVTWIYFLCAGLHLR--------------------------GPSADGDSV----------------Y 196
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024417028  985 SFKAQLRAAAFTLFLFTATWTFGALAVSQGHFLDMIFSCLYGAFCVTLGLFILIHHCAKRDDVWHCWWSCCP 1056
Cdd:cd15998    197 SPGVQLGALVTTHFLYLAMWACGALAVSQRWLPRVVCSCLYGVAASALGLFVFTHHCARRRDVRASWRACCP 268
7tmB2_Adhesion cd15040
adhesion receptors, subfamily B2 of the class B family of seven-transmembrane G ...
748-1051 4.06e-55

adhesion receptors, subfamily B2 of the class B family of seven-transmembrane G protein-coupled receptors; The B2 subfamily of class B GPCRs consists of cell-adhesion receptors with 33 members in humans and vertebrates. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing a variety of structural motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, linked to a class B seven-transmembrane domain. These include, for example, EGF (epidermal growth factor)-like domains in CD97, Celsr1 (cadherin family member), Celsr2, Celsr3, EMR1 (EGF-module-containing mucin-like hormone receptor-like 1), EMR2, EMR3, and Flamingo; two laminin A G-type repeats and nine cadherin domains in Flamingo and its human orthologs Celsr1, Celsr2 and Celsr3; olfactomedin-like domains in the latrotoxin receptors; and five or four thrombospondin type 1 repeats in BAI1 (brain-specific angiogenesis inhibitor 1), BAI2 and BAI3. Furthermore, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320168 [Multi-domain]  Cd Length: 253  Bit Score: 192.40  E-value: 4.06e-55
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  748 LHPVVYACTAVMLLCLFASIITYIVHHSTIRisRKGWHMLLNFCFHTALTFAVFAGGINRIKYPIICQAVGIVLHYSTLS 827
Cdd:cd15040      4 LSIITYIGCGLSLLGLLLTIITYILFRKLRK--RKPTKILLNLCLALLLANLLFLFGINSTDNPVLCTAVAALLHYFLLA 81
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  828 TMLWIGVTARNIYKQVTKKTqscqngdqPSYPKQPLLRFYLISGGVPFIICGITAATNINNYGieGNAPYCWMAWE-PSL 906
Cdd:cd15040     82 SFMWMLVEALLLYLRLVKVF--------GTYPRHFILKYALIGWGLPLIIVIITLAVDPDSYG--NSSGYCWLSNGnGLY 151
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  907 GAFYGPIAFIVLVTCIYFLCTYIQLKRHPerkyelKERTEDPQRMpstevghshitdaasipqaacsmisssllenehsF 986
Cdd:cd15040    152 YAFLGPVLLIILVNLVIFVLVLRKLLRLS------AKRNKKKRKK----------------------------------T 191
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024417028  987 KAQLRAAAFTLFLFTATWTFGALAVSQGHfldMIFSCLYGAFCVTLGLFILIHHCAKRDDVWHCW 1051
Cdd:cd15040    192 KAQLRAAVSLFFLLGLTWIFGILAIFGAR---VVFQYLFAIFNSLQGFFIFIFHCLRNKEVRKAW 253
7tm_classB cd13952
class B family of seven-transmembrane G protein-coupled receptors; The class B of ...
748-1051 4.16e-40

class B family of seven-transmembrane G protein-coupled receptors; The class B of seven-transmembrane GPCRs is classified into three major subfamilies: subfamily B1 (secretin-like receptor family), B2 (adhesion family), and B3 (Methuselah-like family). The class B receptors have been identified in all the vertebrates, from fishes to mammals, as well as invertebrates including Caenorhabditis elegans and Drosophila melanogaster, but are not present in plants, fungi or prokaryotes. The B1 subfamily comprises receptors for polypeptide hormones of 27-141 amino-acid residues such as secretin, glucagon, glucagon-like peptide (GLP), calcitonin gene-related peptide, parathyroid hormone (PTH), and corticotropin-releasing factor. These receptors contain the large N-terminal extracellular domain (ECD), which plays a critical role in hormone recognition by binding to the C-terminal portion of the peptide. On the other hand, the N-terminal segment of the hormone induces receptor activation by interacting with the receptor transmembrane domains and connecting extracellular loops, triggering intracellular signaling pathways. All members of the subfamily B1 receptors preferentially couple to G proteins of G(s) family, which positively stimulate adenylate cyclase, leading to increased intracellular cAMP formation and calcium influx. The subfamily B2 consists of cell-adhesion receptors with 33 members in humans and vertebrates. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing a variety of structural motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, linked to a class B seven-transmembrane domain. These include, for example, EGF (epidermal growth factor)-like domains in CD97, Celsr1 (cadherin family member), Celsr2, Celsr3, EMR1 (EGF-module-containing mucin-like hormone receptor-like 1), EMR2, EMR3, and Flamingo; two laminin A G-type repeats and nine cadherin domains in Flamingo and its human orthologs Celsr1, Celsr2 and Celsr3; olfactomedin-like domains in the latrotoxin receptors; and five or four thrombospondin type 1 repeats in BAI1 (brain-specific angiogenesis inhibitor 1), BAI2 and BAI3. Almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions. Furthermore, the subfamily B3 includes Methuselah (Mth) protein, which was originally identified in Drosophila as a GPCR affecting stress resistance and aging, and its closely related proteins.


Pssm-ID: 410627 [Multi-domain]  Cd Length: 260  Bit Score: 149.67  E-value: 4.16e-40
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  748 LHPVVYACTAVMLLCLFASIITYIVHHSTIRISRKgwhMLLNFCFHTALTFAVFAGGINRI--KYPIICQAVGIVLHYST 825
Cdd:cd13952      4 LSIITYIGCSLSLVGLLLTIITYLLFPKLRNLRGK---ILINLCLSLLLAQLLFLIGQLLTssDRPVLCKALAILLHYFL 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  826 LSTMLWIGVTARNIYKQVTKKtqscqngdQPSYPKQPLLRFYLISGGVPFIICGITAATNINNYG--IEGNAPYCWM-AW 902
Cdd:cd13952     81 LASFFWMLVEAFDLYRTFVKV--------FGSSERRRFLKYSLYGWGLPLLIVIITAIVDFSLYGpsPGYGGEYCWLsNG 152
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  903 EPSLGAFYGPIAFIVLVTCIYFLCTYIQLKRHPERKYELKERtedpqrmpstevghshitdaasipqaacsmisssllen 982
Cdd:cd13952    153 NALLWAFYGPVLLILLVNLVFFILTVRILLRKLRETPKQSER-------------------------------------- 194
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2024417028  983 eHSFKAQLRAAAFTLFLFTATWTFGALAVSQGhfLDMIFSCLYGAFCVTLGLFILIHHCAKRDDVWHCW 1051
Cdd:cd13952    195 -KSDRKQLRAYLKLFPLMGLTWIFGILAPFVG--GSLVFWYLFDILNSLQGFFIFLIFCLKNKEVRRLL 260
7tmB2_CELSR_Adhesion_IV cd15441
cadherin EGF LAG seven-pass G-type receptors, group IV adhesion GPCRs, member of the class B2 ...
793-1041 1.71e-25

cadherin EGF LAG seven-pass G-type receptors, group IV adhesion GPCRs, member of the class B2 family of seven-transmembrane G protein-coupled receptors; The group IV adhesion GPCRs include the cadherin EGF LAG seven-pass G-type receptors (CELSRs) and their Drosophila homolog Flamingo (also known as Starry night). These receptors are also classified as that belongs to the EGF-TM7 group of subfamily B2 adhesion GPCRs, because they contain EGF-like domains. Functionally, the group IV receptors act as key regulators of many physiological processes such as endocrine cell differentiation, neuronal migration, dendrite growth, axon, guidance, lymphatic vessel and valve formation, and planar cell polarity (PCP) during embryonic development. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. In the case of CELSR/Flamingo/Starry night, their extracellular domains comprise nine cadherin repeats linked to a series of epidermal growth factor (EGF)-like and laminin globular (G)-like domains. The cadherin repeats contain sequence motifs that mediate calcium-dependent cell-cell adhesion by homophilic interactions. Moreover, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions. Three mammalian orthologs of Flamingo, Celsr1-3, are widely expressed in the nervous system from embryonic development until the adult stage. Each Celsr exhibits different expression patterns in the developing brain, suggesting that they serve distinct functions. Mutations of CELSR1 cause neural tube defects in the nervous system, while mutations of CELSR2 are associated with coronary heart disease. Moreover, CELSR1 and several other PCP signaling molecules, such as dishevelled, prickle, frizzled, have been shown to be upregulated in B lymphocytes of chronic lymphocytic leukemia patients. Celsr3 is expressed in both the developing and adult mouse brain. It has been functionally implicated in proper neuron migration and axon guidance in the CNS.


Pssm-ID: 320557 [Multi-domain]  Cd Length: 254  Bit Score: 106.95  E-value: 1.71e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  793 HTALTFAVFAG------GINRIKYPIICQAVGIVLHYSTLSTMLWIGVTARNIYKQVT--KKTQSCQngdqpsypkqplL 864
Cdd:cd15441     40 HKNLVACLLLAellfllGINQTENLFPCKLIAILLHYFYLSAFSWLLVESLHLYRMLTepRDINHGH------------M 107
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  865 RFY-LISGGVPFIICGITAATNINNYgieGNAPYCWM-AWEPSLGAFYGPIAFIVLVTCIYF---LCTYIQLKRHPERKy 939
Cdd:cd15441    108 RFYyLLGYGIPAIIVGLSVGLRPDGY---GNPDFCWLsVNETLIWSFAGPIAFVIVITLIIFilaLRASCTLKRHVLEK- 183
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  940 elkertedpqrmpstevghshitdaasipqaacsmissslleneHSFKAQLRAAAFTLFLFTATWTFGALAVSQGhflDM 1019
Cdd:cd15441    184 --------------------------------------------ASVRTDLRSSFLLLPLLGATWVFGLLAVNED---SE 216
                          250       260
                   ....*....|....*....|..
gi 2024417028 1020 IFSCLYGAFCVTLGLFILIHHC 1041
Cdd:cd15441    217 LLHYLFAGLNFLQGLFIFLFYC 238
7tmB2_CELSR1 cd15991
Cadherin EGF LAG seven-pass G-type receptor 1, member of the class B2 family of ...
748-1047 2.48e-19

Cadherin EGF LAG seven-pass G-type receptor 1, member of the class B2 family of seven-transmembrane G protein-coupled receptors; The group IV adhesion GPCRs include the cadherin EGF LAG seven-pass G-type receptors (CELSRs) and their Drosophila homolog Flamingo (also known as Starry night). These receptors are also classified as that belongs to the EGF-TM7 group of subfamily B2 adhesion GPCRs, because they contain EGF-like domains. Functionally, the group IV receptors act as key regulators of many physiological processes such as endocrine cell differentiation, neuronal migration, dendrite growth, axon, guidance, lymphatic vessel and valve formation, and planar cell polarity (PCP) during embryonic development. Three mammalian orthologs of Flamingo, Celsr1-3, are widely expressed in the nervous system from embryonic development until the adult stage. Each Celsr exhibits different expression patterns in the developing brain, suggesting that they serve distinct functions. Mutations of CELSR1 cause neural tube defects in the nervous system, while mutations of CELSR2 are associated with coronary heart disease. Moreover, CELSR1 and several other PCP signaling molecules, such as dishevelled, prickle, frizzled, have been shown to be upregulated in B lymphocytes of chronic lymphocytic leukemia patients. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. In the case of CELSR/Flamingo/Starry night, their extracellular domains comprise nine cadherin repeats linked to a series of epidermal growth factor (EGF)-like and laminin globular (G)-like domains. The cadherin repeats contain sequence motifs that mediate calcium-dependent cell-cell adhesion by homophilic interactions. Moreover, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320657 [Multi-domain]  Cd Length: 254  Bit Score: 89.14  E-value: 2.48e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  748 LHPVVYACTAVMLLCLfasIITYIVHhSTIRISRKGWHMLLNFCFhTALTFA--VFAGGINRIKYPIICQAVGIVLHYST 825
Cdd:cd15991      4 LKIITYTTVSLSLVAL---LITFILL-VLIRTLRSNLHSIHKNLV-AALFFSelIFLIGINQTENPFVCTVVAILLHYFY 78
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  826 LSTMLWIGVTARNIYKQVTKktqsCQNGDQPSypkqplLRFYLISG-GVPFIICGITAATNINNYgieGNAPYCWMAWEP 904
Cdd:cd15991     79 MSTFAWMFVEGLHIYRMLTE----VRNINTGH------MRFYYVVGwGIPAIITGLAVGLDPQGY---GNPDFCWLSVQD 145
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  905 SL-GAFYGPIAFIVLVTCIYFLctyIQLKRHPERKYELKERTedpqrmpstevghshitdaasipqAACSMisssllene 983
Cdd:cd15991    146 TLiWSFAGPIGIVVIINTVIFV---LAAKASCGRRQRYFEKS------------------------GVISM--------- 189
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2024417028  984 hsfkaqLRAAAFTLFLFTATWTFGALAVSQG----HFLDMIFSCLYgafcvtlGLFILIHHCAKRDDV 1047
Cdd:cd15991    190 ------LRTAFLLLLLISATWLLGLMAVNSDtlsfHYLFAIFSCLQ-------GIFIFFFHCIFNKEV 244
7tmB2_GPR133-like_Adhesion_V cd15933
orphan GPR133 and related proteins, group V adhesion GPCRs, member of class B2 family of ...
751-1042 2.81e-19

orphan GPR133 and related proteins, group V adhesion GPCRs, member of class B2 family of seven-transmembrane G protein-coupled receptors; group V adhesion GPCRs include orphan receptors GPR133, GPR144, and closely related proteins. The function of GPR144 has not yet been characterized, whereas GPR133 is highly expressed in the pituitary gland and is coupled to the G(s) protein, leading to activation of adenylate cyclase pathway. Moreover, genetic variations in the GPR133 have been reported to be associated with adult height and heart rate. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in ligand recognition as well as cell-cell adhesion and cell-matrix interactions, linked by a stalk region to a class B seven-transmembrane domain. In addition, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR-autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions. However, several adhesion GPCRs, including GPR 111, GPR115, and CELSR1, are predicted to be non-cleavable at the GAIN domain because of the lack of a consensus catalytic triad sequence (His-Leu-Ser/Thr) within their GPS.


Pssm-ID: 320599 [Multi-domain]  Cd Length: 252  Bit Score: 88.92  E-value: 2.81e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  751 VVYACTAVMLLCLFASIITYIVhhstIRISRKGWHML-LNFCFHTALTFAVFAGGINRIKYPIICQAVGIVLHYSTLSTM 829
Cdd:cd15933      7 ISYIGCGISIACLALTLIIFLV----LRVLSSDRFQIhKNLCVALLLAQILLLAGEWAEGNKVACKVVAILLHFFFMAAF 82
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  830 LWIGVTARNIYKQVTKktqscqngdqPSYPKQPLLRFYLISGGVPFIICGITAATNINNYGIEGNapyCWMAWEPSL-GA 908
Cdd:cd15933     83 SWMLVEGLHLYLMIVK----------VFNYKSKMRYYYFIGWGLPAIIVAISLAILFDDYGSPNV---CWLSLDDGLiWA 149
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  909 FYGPIAFIVLVTCIYFLCTyiqlkrhperkyeLKERTEDPQRMPSTevghsHITDAASIpqaacsmisssllenehsfKA 988
Cdd:cd15933    150 FVGPVIFIITVNTVILILV-------------VKITVSLSTNDAKK-----SQGTLAQI-------------------KS 192
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 2024417028  989 QLRAAAFTLFLFTATWTFGALAV-SQGHFLDMIFSCLYGafcvTLGLFILIHHCA 1042
Cdd:cd15933    193 TAKASVVLLPILGLTWLFGVLVVnSQTIVFQYIFVILNS----LQGLMIFLFHCV 243
7tmB2_latrophilin-like_invertebrate cd15440
invertebrate latrophilin-like receptors, member of the class B2 family of seven-transmembrane ...
753-1047 7.14e-18

invertebrate latrophilin-like receptors, member of the class B2 family of seven-transmembrane G protein-coupled receptors; This subgroup includes latrophilin-like proteins that are found in invertebrates such as insects and worms. Latrophilins (also called lectomedins or latrotoxin receptors) belong to Group I adhesion GPCRs, which also include ETL (EGF-TM7-latrophilin-related protein). These receptors are a member of the adhesion family (subclass B2) that belongs to the class B GPCRs. Three subtypes of vertebrate latrophilins have been identified: LPH1 (latrophilin-1), LPH2, and LPH3. The latrophilin-1 is a brain-specific calcium-independent receptor of alpha-latrotoxin, a potent presynaptic neurotoxin from the venom of the black widow spider that induces massive neurotransmitter release from sensory and motor neurons as well as endocrine cells, leading to nerve-terminal degeneration. Latrophilin-2 and -3, although sharing strong sequence homology to latrophilin-1, do not bind alpha-latrotoxin. While latrophilin-3 is also brain specific, latrophilin-2 is ubiquitously distributed. The endogenous ligands for these two receptors are unknown. ETL, a seven transmembrane receptor containing EGF-like repeats is highly expressed in heart, where developmentally regulated, as well as in normal smooth cells. The function of the ETL is unknown. All adhesion GPCRs possess large N-terminal extracellular domains containing multiple structural motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, coupled to a seven-transmembrane domain. In addition, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR-autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320556 [Multi-domain]  Cd Length: 259  Bit Score: 85.01  E-value: 7.14e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  753 YACTAVMLLCLFASIITYIVHHStIRISRKGWHMllNFCFHTALTFAVFAGGINRIKYPIICQAVGIVLHYSTLSTMLWI 832
Cdd:cd15440      9 YIGCIISIVCLLLAFITFTCFRN-LQCDRNTIHK--NLCLCLLIAEIVFLLGIDQTENRTLCGVIAGLLHYFFLAAFSWM 85
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  833 GVTARNIYKQVTKKTqscqngdQPSYPKQPLlrFYLISGGVPFIICGITAATNINNYGIEgnaPYCWMAWE-PSLGAFYG 911
Cdd:cd15440     86 LLEGFQLYVMLVEVF-------EPEKSRIKW--YYLFGYGLPALIVAVSAGVDPTGYGTE---DHCWLSTEnGFIWSFVG 153
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  912 PIAFIVLVTCIYFLCTYIQLKRHPERKYELKERtedpqrmpstevghshitdaasipqaacsmissSLLENehsFKAQLR 991
Cdd:cd15440    154 PVIVVLLANLVFLGMAIYVMCRHSSRSASKKDA---------------------------------SKLKN---IRGWLK 197
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 2024417028  992 AAAFTLFLFTATWTFGALAVSQGH-FLDMIFSCLYgafcvTL-GLFILIHHCAKRDDV 1047
Cdd:cd15440    198 GSIVLVVLLGLTWTFGLLFINQESiVMAYIFTILN-----SLqGLFIFIFHCVLNEKV 250
LRR_8 pfam13855
Leucine rich repeat;
93-151 1.08e-17

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 78.34  E-value: 1.08e-17
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 2024417028   93 RSLERLDLKNNLISTIEPGAFHGLSELKRLDLSNNRIGCLTPEMFVGLNSLHKLNLSGN 151
Cdd:pfam13855    1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGN 59
LRR_8 pfam13855
Leucine rich repeat;
73-129 2.03e-17

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 77.56  E-value: 2.03e-17
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2024417028   73 SLILSNNKILWLKNGSFFGLRSLERLDLKNNLISTIEPGAFHGLSELKRLDLSNNRI 129
Cdd:pfam13855    5 SLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
7tmB3_Methuselah-like cd15039
Methuselah-like subfamily B3, member of the class B family of seven-transmembrane G ...
748-951 2.37e-17

Methuselah-like subfamily B3, member of the class B family of seven-transmembrane G protein-coupled receptors; The subfamily B3 of class B GPCRs consists of Methuselah (Mth) and its closely related proteins found in bilateria. Mth was originally identified in Drosophila as a GPCR affecting stress resistance and aging. In addition to the seven transmembrane helices, Mth contains an N-terminal extracellular domain involved in ligand binding, and a third intracellular loop (IC3) required for the specificity of G-protein coupling. Drosophila Mth mutants showed an increase in average lifespan by 35% and greater resistance to a variety of stress factors, including starvation, high temperature, and paraquat-induced oxidative toxicity. Moreover, mutations in two endogenous peptide ligands of Methuselah, Stunted A and B, showed an increased in lifespan and resistance to oxidative stress induced by dietary paraquat. These results strongly suggest that the Stunted-Methuselah system plays important roles in stress response and aging.


Pssm-ID: 410632 [Multi-domain]  Cd Length: 270  Bit Score: 83.81  E-value: 2.37e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  748 LHPVVYACTAVMLLCLFASIITYIVhhstIRISRKG-WHMLLNFCFHTALTFAVFA-GGINRIKYPIICQAVGIVLHYST 825
Cdd:cd15039      4 LGILTLIGLIISLVFLLLTLAVYAL----LPELRNLhGKCLMCLVLSLFVAYLLLLiGQLLSSGDSTLCVALGILLHFFF 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  826 LSTMLWIGVTARNIYKQVTKKTQSCQNgdqpSYPKQPLLRFYLISGGVPFIICGITAA----TNINNYGIEGNAPYCWM- 900
Cdd:cd15039     80 LAAFFWLNVMSFDIWRTFRGKRSSSSR----SKERKRFLRYSLYAWGVPLLLVAVTIIvdfsPNTDSLRPGYGEGSCWIs 155
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|..
gi 2024417028  901 AWEPSLGAFYGPIAFIVLVTCIYFLCTYIQLKRHP-ERKYELKERTEDPQRM 951
Cdd:cd15039    156 NPWALLLYFYGPVALLLLFNIILFILTAIRIRKVKkETAKVQSRLRSDKQRF 207
7tmB2_CD97 cd15438
CD97 antigen, member of the class B2 family of seven-transmembrane G protein-coupled receptors; ...
757-931 2.04e-16

CD97 antigen, member of the class B2 family of seven-transmembrane G protein-coupled receptors; group II adhesion GPCRs, including the leukocyte cell-surface antigen CD97 and the epidermal growth factor (EGF)-module-containing, mucin-like hormone receptor (EMR1-4), are primarily expressed in cells of the immune system. All EGF-TM7 receptors, which belong to the B2 subfamily B2 of adhesion GPCRs, are members of group II, except for ETL (EGF-TM7-latrophilin related protein), which is classified into group I. Members of the EGF-TM7 receptors are characterized by the presence of varying numbers of N-terminal EGF-like domains, which play critical roles in ligand recognition and cell adhesion, linked by a stalk region to a class B seven-transmembrane domain. In the case of CD97, alternative splicing results in three isoforms possessing either three (EGF1,2,5), four (EGF1,2,3,5) or five (EGF1,2,3,4,5) EGF-like domains. Moreover, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions. For example, CD97, which is involved in angiogenesis and the migration and invasion of tumor cells, has been shown to promote cell aggregation in a GPS proteolysis-dependent manner. CD97 is widely expressed on lymphocytes, monocytes, macrophages, dendritic cells, granulocytes and smooth muscle cells as well as in a variety of human tumors including colorectal, gastric, esophageal pancreatic, and thyroid carcinoma. EMR2 shares strong sequence homology with CD97, differing by only six amino acids. However, unlike CD97, EMR2 is not found in those of CD97-positive tumor cells and is not expressed on lymphocytes but instead on monocytes, macrophages and granulocytes. CD97 has three known ligands: CD55, decay-accelerating factor for regulation of complement system; chondroitin sulfate, a glycosaminoglycan found in the extracellular matrix; and the integrin alpha5beta1, which play a role in angiogenesis. Although EMR2 does not effectively interact with CD55, the fourth EGF-like domain of this receptor binds to chondroitin sulfate to mediate cell attachment.


Pssm-ID: 320554 [Multi-domain]  Cd Length: 261  Bit Score: 80.58  E-value: 2.04e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  757 AVMLLCLFASIITYIVHHStIRISRKGWHMLLNFCFHTALTfaVFAGGINRIKYPIICQAVGIVLHYSTLSTMLWIGVTA 836
Cdd:cd15438     13 SVSLFCLFLCILTFLFCRS-IRGTRNTIHLHLCLSLFLAHL--IFLLGINNTNNQVACAVVAGLLHYFFLAAFCWMSLEG 89
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  837 RNIYKQVTKKTQScqngdqpsypkQPLLRFYLISG--GVPFIICGITAATNINNYgieGNAPYCWMAWEPS-LGAFYGPI 913
Cdd:cd15438     90 VELYLMVVQVFNT-----------QSLKKRYLLLIgyGVPLVIVAISAAVNSKGY---GTQRHCWLSLERGfLWSFLGPV 155
                          170
                   ....*....|....*...
gi 2024417028  914 AFIVLVTCIYFLCTYIQL 931
Cdd:cd15438    156 CLIILVNAIIFVITVWKL 173
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
64-323 5.02e-15

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 78.82  E-value: 5.02e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028   64 PAVLPNRT--VSLILSNNKILWLKNgSFFGLRSLERLDLKNNLISTIePGAFHGLSELKRLDLSNNRIGCLtPEMFVGLN 141
Cdd:COG4886    152 PEPLGNLTnlKSLDLSNNQLTDLPE-ELGNLTNLKELDLSNNQITDL-PEPLGNLTNLEELDLSGNQLTDL-PEPLANLT 228
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  142 SLHKLNLSGNIFSSLmnglfSELLALKalhfntdslicdcNLKWvLQWARNASVRIAEEtvcaypSALQGLSFRNLKENQ 221
Cdd:COG4886    229 NLETLDLSNNQLTDL-----PELGNLT-------------NLEE-LDLSNNQLTDLPPL------ANLTNLKTLDLSNNQ 283
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  222 L--ICAGPLELPLFELIPSQRQVVFHGDRLPFQCTATYVDKTTQVHWYHAGRLIETDEESGIFVEDSIIHDCCLITRELI 299
Cdd:COG4886    284 LtdLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLL 363
                          250       260
                   ....*....|....*....|....
gi 2024417028  300 LSSIDINASGDWECLVNNSYGNST 323
Cdd:COG4886    364 TLLLTLGLLGLLEATLLTLALLLL 387
7tmB2_CELSR3 cd15993
Cadherin EGF LAG seven-pass G-type receptor 3, member of the class B2 family of ...
746-1055 6.96e-14

Cadherin EGF LAG seven-pass G-type receptor 3, member of the class B2 family of seven-transmembrane G protein-coupled receptors; The group IV adhesion GPCRs include the cadherin EGF LAG seven-pass G-type receptors (CELSRs) and their Drosophila homolog Flamingo (also known as Starry night). These receptors are also classified as that belongs to the EGF-TM7 group of subfamily B2 adhesion GPCRs, because they contain EGF-like domains. Functionally, the group IV receptors act as key regulators of many physiological processes such as endocrine cell differentiation, neuronal migration, dendrite growth, axon, guidance, lymphatic vessel and valve formation, and planar cell polarity (PCP) during embryonic development. Three mammalian orthologs of Flamingo, Celsr1-3, are widely expressed in the nervous system from embryonic development until the adult stage. Each Celsr exhibits different expression patterns in the developing brain, suggesting that they serve distinct functions. Mutations of CELSR1 cause neural tube defects in the nervous system, while mutations of CELSR2 are associated with coronary heart disease. Moreover, CELSR1 and several other PCP signaling molecules, such as dishevelled, prickle, frizzled, have been shown to be upregulated in B lymphocytes of chronic lymphocytic leukemia patients. Celsr3 is expressed in both the developing and adult mouse brain. It has been functionally implicated in proper neuronal migration and axon guidance in the CNS. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. In the case of CELSR/Flamingo/Starry night, their extracellular domains comprise nine cadherin repeats linked to a series of epidermal growth factor (EGF)-like and laminin globular (G)-like domains. The cadherin repeats contain sequence motifs that mediate calcium-dependent cell-cell adhesion by homophilic interactions. Moreover, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320659 [Multi-domain]  Cd Length: 254  Bit Score: 72.95  E-value: 6.96e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  746 EFLHPVVYACTAVML--LCLFASIITYIvhhSTIRISRKGWHMllNFCFHTALTFAVFAGGINRIKYPIICQAVGIVLHY 823
Cdd:cd15993      2 ETLAIVTYSSVSASLaaLVLTFSVLTCL---RGLKSNTRGIHS--NIAAALFLSELLFLLGINRTENQFLCTVVAILLHY 76
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  824 STLSTMLWIGVTARNIYKQVTkktqscqngdQPSYPKQPLLRFYLISG-GVPFIICGITAATNINNYgieGNAPYCWMA- 901
Cdd:cd15993     77 FFLSTFAWLFVQGLHIYRMQT----------EARNVNFGAMRFYYAIGwGVPAIITGLAVGLDPEGY---GNPDFCWISi 143
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  902 WEPSLGAFYGPIAFIVLVTCIYFLCtyiqlkrhperkyelkertedpqrmpstevghshitdaasIPQAACSMISSSLLE 981
Cdd:cd15993    144 HDKLVWSFAGPIVVVIVMNGVMFLL----------------------------------------VARMSCSPGQKETKK 183
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024417028  982 NehSFKAQLRAAAFTLFLFTATWTFGALAVSQGhflDMIFSCLYGAFCVTLGLFILIHHCAKRDDVWHCWWSCC 1055
Cdd:cd15993    184 T--SVLMTLRSSFLLLLLISATWLFGLLAVNNS---VLAFHYLHAILCCLQGLAVLLLFCVLNEEVQEAWKLAC 252
7tmB2_Latrophilin-1 cd16007
Latrophilin-1, member of the class B2 family of seven-transmembrane G protein-coupled ...
747-1055 8.24e-14

Latrophilin-1, member of the class B2 family of seven-transmembrane G protein-coupled receptors; Latrophilins (also called lectomedins or latrotoxin receptors) belong to Group I adhesion GPCRs, which also include ETL (EGF-TM7-latrophilin-related protein). These receptors are a member of the adhesion family (subclass B2) that belongs to the class B GPCRs. Three subtypes of latrophilins have been identified: LPH1 (latrophilin-1), LPH2, and LPH3. The latrophilin-1 is a brain-specific calcium-independent receptor of alpha-latrotoxin, a potent presynaptic neurotoxin from the venom of the black widow spider that induces massive neurotransmitter release from sensory and motor neurons as well as endocrine cells, leading to nerve-terminal degeneration. Latrophilin-2 and -3, although sharing strong sequence homology to latrophilin-1, do not bind alpha-latrotoxin. While latrophilin-3 is also brain specific, latrophilin-2 is ubiquitously distributed. The endogenous ligands for these two receptors are unknown. ETL, a seven transmembrane receptor containing EGF-like repeats is highly expressed in heart, where developmentally regulated, as well as in normal smooth cells. The function of the ETL is unknown. All adhesion GPCRs possess large N-terminal extracellular domains containing multiple structural motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, coupled to a seven-transmembrane domain. In addition, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR-autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320673 [Multi-domain]  Cd Length: 258  Bit Score: 73.03  E-value: 8.24e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  747 FLHPVVYACTAVMLLCLFASIITYIVHHStIRISRKGWHMllNFCFHTALTFAVFAGGINRIKYPIICQAVGIVLHYSTL 826
Cdd:cd16007      3 LLSVITWVGIVISLVCLAICISTFCFLRG-LQTDRNTIHK--NLCINLFLAELLFLIGIDKTQYQIACPIFAGLLHFFFL 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  827 STMLWIGVTARNIYKQVTKKTQScqngdqpSYPKQpllRFYLISGGV-PFIICGITAATNINNYGIEgnaPYCWMAWEPS 905
Cdd:cd16007     80 AAFSWLCLEGVQLYLMLVEVFES-------EYSRK---KYYYLCGYCfPALVVGISAAIDYRSYGTE---KACWLRVDNY 146
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  906 -LGAFYGPIAFIVLVTCIYFLCTYiqlkrhperkyelkertedpqrmpstevgHSHITDAASIPQaacsmiSSSLLENeh 984
Cdd:cd16007    147 fIWSFIGPVSFVIVVNLVFLMVTL-----------------------------HKMIRSSSVLKP------DSSRLDN-- 189
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2024417028  985 sFKAQLRAAAFTLFLFTATWTFGALAVSQGhflDMIFSCLYGAFCVTLGLFILIHHCAKRDDVwHCWWSCC 1055
Cdd:cd16007    190 -IKSWALGAITLLFLLGLTWAFGLLFINKE---SVVMAYLFTTFNAFQGMFIFIFHCALQKKV-HKEYSKC 255
7tmB2_GPR133 cd15256
orphan adhesion receptor GPR133, member of the class B2 family of seven-transmembrane G ...
748-1047 4.23e-13

orphan adhesion receptor GPR133, member of the class B2 family of seven-transmembrane G protein-coupled receptors; GPR133 is an orphan receptor that belongs to the group V adhesion-GPCRs together with GPR144. The function of GPR144 has not yet been characterized, whereas GPR133 is highly expressed in the pituitary gland and is coupled to the Gs protein, leading to activation of adenylyl cyclase pathway. Moreover, genetic variations in the GPR133 have been reported to be associated with adult height and heart rate. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in ligand recognition as well as cell-cell adhesion and cell-matrix interactions, linked by a stalk region to a class B seven-transmembrane domain. In addition, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR-autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions. However, several adhesion GPCRs, including GPR 111, GPR115, and CELSR1, are predicted to be non-cleavable at the GAIN domain because of the lack of a consensus catalytic triad sequence (His-Leu-Ser/Thr) within their GPS.


Pssm-ID: 320384 [Multi-domain]  Cd Length: 260  Bit Score: 70.72  E-value: 4.23e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  748 LHPVVYACTAVMLLCLFASIITYIVHHSTIRISRKGWHMllnfcfHTALTFAVFAGGI------NRIKYPIICQAVGIVL 821
Cdd:cd15256      4 LSSITYVGCSLSIFCLAITLVTFAVLSSVSTIRNQRYHI------HANLSFAVLVAQIlllisfRFEPGTLPCKIMAILL 77
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  822 HYSTLSTMLWIGVTARNIYKQVTKKTQScqNGDQPSYpkqpllrFYLISGGVPFIICGITAATNINNYGIEGNapyCWMA 901
Cdd:cd15256     78 HFFFLSAFAWMLVEGLHLYSMVIKVFGS--EESKHFY-------YYGIGWGSPLLICIISLTSALDSYGESDN---CWLS 145
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  902 WEP-SLGAFYGPIAFIVLVTCIYFLCTYIQLKRHPERKYELKERTedpqrmpstevghshitdaasipqaacsmisssll 980
Cdd:cd15256    146 LENgAIWAFVAPALFVIVVNIGILIAVTRVISRISADNYKVHGDA----------------------------------- 190
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024417028  981 eneHSFKAQLRAAAFTLFLFTATWTFGALAVSqGHFLdmIFSCLYGAFCVTLGLFILIHHCAKRDDV 1047
Cdd:cd15256    191 ---NAFKLTAKAVAVLLPILGSSWVFGVLAVN-THAL--VFQYMFAIFNSLQGFFIFLFHCLLNSEV 251
7tmB2_Latrophilin_Adhesion_I cd15252
Latrophilins and similar receptors, group I adhesion GPCRs, member of class B2 family of ...
760-1047 6.22e-13

Latrophilins and similar receptors, group I adhesion GPCRs, member of class B2 family of seven-transmembrane G protein-coupled receptors; Group I adhesion GPCRs consist of latrophilins (also called lectomedins or latrotoxin receptors) and ETL (EGF-TM7-latrophilin-related protein. These receptors are a member of the adhesion family (subclass B2) that belongs to the class B GPCRs. Three subtypes of latrophilins have been identified: LPH1 (latrophilin-1), LPH2, and LPH3. The latrophilin-1 is a brain-specific calcium-independent receptor of alpha-latrotoxin, a potent presynaptic neurotoxin from the venom of the black widow spider that induces massive neurotransmitter release from sensory and motor neurons as well as endocrine cells, leading to nerve-terminal degeneration. Latrophilin-2 and -3, although sharing strong sequence homology to latrophilin-1, do not bind alpha-latrotoxin. While latrophilin-3 is also brain specific, latrophilin-2 is ubiquitously distributed. The endogenous ligands for these two receptors are unknown. ETL, a seven transmembrane receptor containing EGF-like repeats is highly expressed in heart, where developmentally regulated, as well as in normal smooth cells. The function of the ETL is unknown. All adhesion GPCRs possess large N-terminal extracellular domains containing multiple structural motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, coupled to a seven-transmembrane domain. In addition, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR-autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320380 [Multi-domain]  Cd Length: 257  Bit Score: 70.23  E-value: 6.22e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  760 LLCLFASIITYIVHhSTIRISRKGWHMllNFCFHTALTFAVFAGGINRIKYPIICQAVGIVLHYSTLSTMLWIGVTARNI 839
Cdd:cd15252     16 LVCLAICIFTFWFF-RGLQSDRTTIHK--NLCISLFLAELVFLIGINTTTNKIFCSVIAGLLHYFFLAAFAWMFIEGIQL 92
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  840 YKQVTKKTQScqngdQPSYPKQpllrFYLISGGVPFIICGITAATNINNYGIEgnaPYCWMAWEPS-LGAFYGPIAFIVL 918
Cdd:cd15252     93 YLMLVEVFEN-----EGSRHKN----FYIFGYGSPAVIVGVSAALGYRYYGTT---KVCWLSTENYfIWSFIGPATLIIL 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  919 VTCIYFLCTYIQLKRHPerkyelkertedpqrmpstevghshitdAASIPQAACsmissslLENehsFKAQLRAAAFTLF 998
Cdd:cd15252    161 LNLIFLGVAIYKMFRHT----------------------------AGLKPEVSC-------LEN---IRSWARGAIALLF 202
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*....
gi 2024417028  999 LFTATWTFGALAVSQGhflDMIFSCLYGAFCVTLGLFILIHHCAKRDDV 1047
Cdd:cd15252    203 LLGLTWIFGVLHINHA---SVVMAYLFTVSNSLQGMFIFLFHCVLSRKV 248
7tmB2_Latrophilin-2 cd16006
Latrophilin-2, member of the class B2 family of seven-transmembrane G protein-coupled ...
757-1054 1.41e-12

Latrophilin-2, member of the class B2 family of seven-transmembrane G protein-coupled receptors; Latrophilins (also called lectomedins or latrotoxin receptors) belong to Group I adhesion GPCRs, which also include ETL (EGF-TM7-latrophilin-related protein). These receptors are a member of the adhesion family (subclass B2) that belongs to the class B GPCRs. Three subtypes of latrophilins have been identified: LPH1 (latrophilin-1), LPH2, and LPH3. The latrophilin-1 is a brain-specific calcium-independent receptor of alpha-latrotoxin, a potent presynaptic neurotoxin from the venom of the black widow spider that induces massive neurotransmitter release from sensory and motor neurons as well as endocrine cells, leading to nerve-terminal degeneration. Latrophilin-2 and -3, although sharing strong sequence homology to latrophilin-1, do not bind alpha-latrotoxin. While latrophilin-3 is also brain specific, latrophilin-2 is ubiquitously distributed. The endogenous ligands for these two receptors are unknown. ETL, a seven transmembrane receptor containing EGF-like repeats is highly expressed in heart, where developmentally regulated, as well as in normal smooth cells. The function of the ETL is unknown. All adhesion GPCRs possess large N-terminal extracellular domains containing multiple structural motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, coupled to a seven-transmembrane domain. In addition, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR-autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320672 [Multi-domain]  Cd Length: 258  Bit Score: 69.17  E-value: 1.41e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  757 AVMLLCLFASIITYIVHHStIRISRKGWHMllNFCFHTALTFAVFAGGINRIKYPIICQAVGIVLHYSTLSTMLWIGVTA 836
Cdd:cd16006     13 VISLVCLAICIFTFCFFRG-LQSDRNTIHK--NLCINLFIAEFIFLIGIDKTEYKIACPIFAGLLHFFFLAAFAWMCLEG 89
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  837 RNIYKQVTKKTQScqngdqpSYPKQpllRFYLISGG-VPFIICGITAATNINNYGIEgnaPYCWMAWEPS-LGAFYGPIA 914
Cdd:cd16006     90 VQLYLMLVEVFES-------EYSRK---KYYYVAGYlFPATVVGVSAAIDYKSYGTE---KACWLRVDNYfIWSFIGPVT 156
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  915 FIVLVTCIYFLCTYIQLKRHperkyelkERTEDPqrmpstevghshitdaasipqaacsmiSSSLLENehsFKAQLRAAA 994
Cdd:cd16006    157 FIILLNLIFLVITLCKMVKH--------SNTLKP---------------------------DSSRLEN---IKSWVLGAF 198
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  995 FTLFLFTATWTFGALAVSQGhflDMIFSCLYGAFCVTLGLFILIHHCAKRDDVWHCWWSC 1054
Cdd:cd16006    199 ALLCLLGLTWSFGLLFINEE---TIVMAYLFTIFNAFQGMFIFIFHCALQKKVRKEYSKC 255
7tmB2_BAI2 cd15988
brain-specific angiogenesis inhibitor 2, a group VII adhesion GPCR, member of the class B2 ...
754-1047 1.59e-12

brain-specific angiogenesis inhibitor 2, a group VII adhesion GPCR, member of the class B2 family of seven-transmembrane G protein-coupled receptors; Brain-specific angiogenesis inhibitors (BAI1-3) constitute the group VII of cell-adhesion receptors that have been implicated in vascularization of glioblastomas. They belong to the B2 subfamily of class B GPCRs, are predominantly expressed in the brain, and are only present in vertebrates. Three BAIs, like all adhesion receptors, are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. For example, BAI1 N-terminus contain an integrin-binding RGD (Arg-Gly-Asp) motif in addition to five thrombospondin type 1 repeats (TSRs), which are known to regulate the anti-angiogenic activity of thrombospondin-1, whereas BAI2 and BAI3 have four TSRs, but do not possess RGD motifs. The TSRs are functionally involved in cell attachment, activation of latent TGF-beta, inhibition of angiogenesis and endothelial cell migration. The TSRs of BAI1 mediates direct binding to phosphatidylserine, which enables both recognition and internalization of apoptotic cells by phagocytes. Thus, BAI1 functions as a phosphatidylserine receptor that forms a trimeric complex with ELMO and Dock180, leading to activation of Rac-GTPase which promotes the binding and phagocytosis of apoptotic cells. BAI3 can also interact with the ELMO-Dock180 complex to activate the Rac pathway and can also bind to secreted C1ql proteins of the C1Q complement family via its N-terminal TSRs. BAI3 and its ligands C1QL1 are highly expressed during synaptogenesis and are involved in synapse specificity. Moreover, BAI2 acts as a transcription repressor to regulate vascular endothelial growth factor (VEGF) expression through interaction with GA-binding protein gamma (GABP). The N-terminal extracellular domains of all three BAIs also contain an evolutionarily conserved GPCR-autoproteolysis inducing (GAIN) domain, which undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif to generate N- and C-terminal fragments (NTF and CTF), a putative hormone-binding domain (HBD), and multiple N-glycosylation sites. The C-terminus of each BAI subtype ends with a conserved Gln-Thr-Glu-Val (QTEV) motif known to interact with PDZ domain-containing proteins, but only BAI1 possesses a proline-rich region, which may be involved in protein-protein interactions.


Pssm-ID: 320654 [Multi-domain]  Cd Length: 291  Bit Score: 69.60  E-value: 1.59e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  754 ACTAVM-LLCLFASIITYIVHHSTIrisrkgwhMLLNFCFHTALTFAVFAGGINRIKYPIICQAVGIVLHYSTLSTMLWI 832
Cdd:cd15988     15 SCMALLiLLAIYAAFWRFIRSERSI--------ILLNFCLSILASNILILVGQSQTLSKGVCTMTAAFLHFFFLSSFCWV 86
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  833 GVTARNIYKQVTKKTQScqngdqpsypKQPLLRFYLISGGVPFIICGITAA-TNINNYGiegNAPYCWMAWEPSL-GAFY 910
Cdd:cd15988     87 LTEAWQSYLAVIGRMRT----------RLVRKRFLCLGWGLPALVVAVSVGfTRTKGYG---TASYCWLSLEGGLlYAFV 153
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  911 GPIAFIVLVTCIYFLCTYIQLKRHPERKYELKERTEDPQRMPSTEVghshitdaaSIPQAACSMISSSLLEN--EHSFKA 988
Cdd:cd15988    154 GPAAVIVLVNMLIGIIVFNKLMSRDGISDKSKKQRAGSEAEPCSSL---------LLKCSKCGVVSSAAMSSatASSAMA 224
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 2024417028  989 QLRAAAFTLFLFTATWTFGALAVSQGHflDMIFSCLYGAFCVTLGLFILIHHCAKRDDV 1047
Cdd:cd15988    225 SLWSSCVVLPLLALTWMSAVLAMTDRR--SILFQVLFAVFNSVQGFVIITVHCFLRREV 281
7tmB2_EMR cd15439
epidermal growth factor-like module-containing mucin-like hormone receptors, member of the ...
757-934 1.76e-12

epidermal growth factor-like module-containing mucin-like hormone receptors, member of the class B2 family of seven-transmembrane G protein-coupled receptors; group II adhesion GPCRs, including the epidermal growth factor (EGF)-module-containing, mucin-like hormone receptor (EMR1-4) and the leukocyte cell-surface antigen CD97, are primarily expressed in cells of the immune system. All EGF-TM7 receptors, which belong to the B2 subfamily of adhesion GPCRs, are members of group II, except for ETL (EGF-TM7-latrophilin related protein), which is classified into group I. Members of the EGF-TM7 receptors are characterized by the presence of varying number of N-terminal EGF-like domains, which play critical roles in ligand recognition and cell adhesion, linked by a stalk region to a class B seven-transmembrane domain. In the case of EMR2, alternative splicing results in four isoforms possessing either two (EGF1,2), three (EGF1,2,5), four (EGF1,2,3,5) or five (EGF1,2,3,4,5) EGF-like domains. Moreover, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR-autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions. EMR2 shares strong sequence homology with CD97, differing by only six amino acids. CD97 is widely expressed on lymphocytes, monocytes, macrophages, dendritic cells, granulocytes and smooth muscle cells as well as in a variety of human tumors including colorectal, gastric, esophageal pancreatic, and thyroid carcinoma. However, unlike CD97, EMR2 is not found in those of CD97-positive tumor cells and is not expressed on lymphocytes but instead on monocytes, macrophages and granulocytes. CD97 has three known ligands: CD55, decay-accelerating factor for regulation of complement system; chondroitin sulfate, a glycosaminoglycan found in the extracellular matrix; and the integrin alpha5beta1, which play a role in angiogenesis. Although EMR2 does not effectively interact with CD55, the fourth EGF-like domain of this receptor binds to chondroitin sulfate to mediate cell attachment.


Pssm-ID: 320555 [Multi-domain]  Cd Length: 263  Bit Score: 68.91  E-value: 1.76e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  757 AVMLLCLFASIITYIVHHStIRISRKGWHMLLNFCFHTA-LTFAVfagGINRIKYPIICQAVGIVLHYSTLSTMLWIGVT 835
Cdd:cd15439     13 IISLLCLFLAILTFLLCRS-IRNTSTSLHLQLSLCLFLAdLLFLV---GIDRTDNKVLCSIIAGFLHYLFLACFAWMFLE 88
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  836 ARNIYkqVTKKTQSCQNGDQPSYPKQPLLrfYLISGGVPFIICGITAATNINNYgieGNAPYCWMAWEPS-LGAFYGPIA 914
Cdd:cd15439     89 AVHLF--LTVRNLKVVNYFSSHRFKKRFM--YPVGYGLPAVIVAISAAVNPQGY---GTPKHCWLSMEKGfIWSFLGPVC 161
                          170       180
                   ....*....|....*....|
gi 2024417028  915 FIVLVTCIYFLCTYIQLKRH 934
Cdd:cd15439    162 VIIVINLVLFCLTLWILREK 181
7tm_2 pfam00002
7 transmembrane receptor (Secretin family); This family is known as Family B, the ...
757-1028 2.06e-12

7 transmembrane receptor (Secretin family); This family is known as Family B, the secretin-receptor family or family 2 of the G-protein-coupled receptors (GCPRs). They have been described in many animal species, but not in plants, fungi or prokaryotes. Three distinct sub-families are recognized. Subfamily B1 contains classical hormone receptors, such as receptors for secretin and glucagon, that are all involved in cAMP-mediated signalling pathways. Subfamily B2 contains receptors with long extracellular N-termini, such as the leukocyte cell-surface antigen CD97; calcium-independent receptors for latrotoxin, and brain-specific angiogenesis inhibitors amongst others. Subfamily B3 includes Methuselah and other Drosophila proteins. Other than the typical seven-transmembrane region, characteriztic structural features include an amino-terminal extracellular domain involved in ligand binding, and an intracellular loop (IC3) required for specific G-protein coupling.


Pssm-ID: 459625 [Multi-domain]  Cd Length: 248  Bit Score: 68.46  E-value: 2.06e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  757 AVMLLCLFASIITYIVHHStIRISRKGWHMllNFCFHTALTFAVFAGGINRIKY--------PIICQAVGIVLHYSTLST 828
Cdd:pfam00002   13 SLSLVALLLAIAIFLLFRK-LHCTRNYIHL--NLFASFILRALLFLVGDAVLFNkqdldhcsWVGCKVVAVFLHYFFLAN 89
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  829 MLWIGVTARNIYKQVTKKTQScqngdqpsyPKQPLLRFYLISGGVPFIICGITAATNINNYgieGNAPYCWMAWE-PSLG 907
Cdd:pfam00002   90 FFWMLVEGLYLYTLLVEVFFS---------ERKYFWWYLLIGWGVPALVVGIWAGVDPKGY---GEDDGCWLSNEnGLWW 157
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  908 AFYGPIAFIVLVTCIYFLCTYIQLKRHPERKYELKERTEDPQRMpstevghshitdaasipqaacsmisssllenehsfk 987
Cdd:pfam00002  158 IIRGPILLIILVNFIIFINIVRILVQKLRETNMGKSDLKQYRRL------------------------------------ 201
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*...
gi 2024417028  988 aqLRAAAFTLFLFTATWTFGALAVSQG-------HFLDMIFSCLYGAF 1028
Cdd:pfam00002  202 --AKSTLLLLPLLGITWVFGLFAFNPEntlrvvfLYLFLILNSFQGFF 247
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
76-182 2.02e-11

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 67.65  E-value: 2.02e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028   76 LSNNKILWL-KNGSFFGLRSLERLDLKNNLISTIePGAFHGLSELKRLDLSNNRIGCLtPEMFVGLNSLHKLNLSGNIFS 154
Cdd:COG4886     95 LTNLTELDLsGNEELSNLTNLESLDLSGNQLTDL-PEELANLTNLKELDLSNNQLTDL-PEPLGNLTNLKSLDLSNNQLT 172
                           90       100
                   ....*....|....*....|....*...
gi 2024417028  155 SlmngLFSELLALKALHfntdSLICDCN 182
Cdd:COG4886    173 D----LPEELGNLTNLK----ELDLSNN 192
7tmB2_EMR_Adhesion_II cd15931
EGF-like module receptors, group II adhesion GPCRs, member of class B2 family of ...
747-927 3.59e-11

EGF-like module receptors, group II adhesion GPCRs, member of class B2 family of seven-transmembrane G protein-coupled receptors; group II adhesion GPCRs, including the leukocyte cell-surface antigen CD97 and the epidermal growth factor (EGF)-module-containing, mucin-like hormone receptor (EMR1-4), are primarily expressed in cells of the immune system. All EGF-TM7 receptors, which belong to the B2 subfamily B2 of adhesion GPCRs, are members of group II, except for ETL (EGF-TM7-latrophilin related protein), which is classified into group I. Members of the EGF-TM7 receptors are characterized by the presence of varying numbers of N-terminal EGF-like domains, which play critical roles in ligand recognition and cell adhesion, linked by a stalk region to a class B seven-transmembrane domain. In the case of CD97, alternative splicing results in three isoforms possessing either three (EGF1,2,5), four (EGF1,2,3,5) or five (EGF1,2,3,4,5) EGF-like domains. On the other hand, EMR2 generates four isoforms possessing either two (EGF1,2), three (EGF1,2,5), four (EGF1,2,3,5) or five (EGF1,2,3,4,5) EGF-like domains. Moreover, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions. For example, CD97, which is involved in angiogenesis and the migration and invasion of tumor cells, has been shown to promote cell aggregation in a GPS proteolysis-dependent manner. CD97 is widely expressed on lymphocytes, monocytes, macrophages, dendritic cells, granulocytes and smooth muscle cells as well as in a variety of human tumors including colorectal, gastric, esophageal pancreatic, and thyroid carcinoma. EMR2 shares strong sequence homology with CD97, differing by only six amino acids. However, unlike CD97, EMR2 is not found in those of CD97-positive tumor cells and is not expressed on lymphocytes but instead on monocytes, macrophages and granulocytes. CD97 has three known ligands: CD55, decay-accelerating factor for regulation of complement system; chondroitin sulfate, a glycosaminoglycan found in the extracellular matrix; and the integrin alpha5beta1, which play a role in angiogenesis. Although EMR2 does not effectively interact with CD55, the fourth EGF-like domain of this receptor binds to chondroitin sulfate to mediate cell attachment.


Pssm-ID: 320597 [Multi-domain]  Cd Length: 262  Bit Score: 65.23  E-value: 3.59e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  747 FLHPVVYACTAVMLLCLFASIITYIVHhSTIRISRKGWHMLLNFCFHTALTfaVFAGGINRIKYPIICQAVGIVLHYSTL 826
Cdd:cd15931      3 FLEWINRVGVIVSLFCLGLAIFTFLLC-RWIPKINTTAHLHLCLCLSMSHT--LFLAGIEYVENELACTVMAGLLHYLFL 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  827 STMLWIGVTARNIYKQVTKKTQScqNGDQPSYPKQPLLrfYLISGGVPFIICGITAATNINNYgieGNAPYCWMAWEPS- 905
Cdd:cd15931     80 ASFVWMLLEALQLHLLVRRLTKV--QVIQRDGLPRPLL--CLIGYGVPFLIVGVSALVYSDGY---GEAKMCWLSQERGf 152
                          170       180
                   ....*....|....*....|..
gi 2024417028  906 LGAFYGPIAFIVLVTCIYFLCT 927
Cdd:cd15931    153 NWSFLGPVIAIIGINWILFCAT 174
7tmB2_CELSR2 cd15992
Cadherin EGF LAG seven-pass G-type receptor 2, member of the class B2 family of ...
796-1028 1.66e-10

Cadherin EGF LAG seven-pass G-type receptor 2, member of the class B2 family of seven-transmembrane G protein-coupled receptors; The group IV adhesion GPCRs include the cadherin EGF LAG seven-pass G-type receptors (CELSRs) and their Drosophila homolog Flamingo (also known as Starry night). These receptors are also classified as that belongs to the EGF-TM7 group of subfamily B2 adhesion GPCRs, because they contain EGF-like domains. Functionally, the group IV receptors act as key regulators of many physiological processes such as endocrine cell differentiation, neuronal migration, dendrite growth, axon, guidance, lymphatic vessel and valve formation, and planar cell polarity (PCP) during embryonic development. Three mammalian orthologs of Flamingo, Celsr1-3, are widely expressed in the nervous system from embryonic development until the adult stage. Each Celsr exhibits different expression patterns in the developing brain, suggesting that they serve distinct functions. Mutations of CELSR1 cause neural tube defects in the nervous system, while mutations of CELSR2 are associated with coronary heart disease. Moreover, CELSR1 and several other PCP signaling molecules, such as dishevelled, prickle, frizzled, have been shown to be upregulated in B lymphocytes of chronic lymphocytic leukemia patients. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. In the case of CELSR/Flamingo/Starry night, their extracellular domains comprise nine cadherin repeats linked to a series of epidermal growth factor (EGF)-like and laminin globular (G)-like domains. The cadherin repeats contain sequence motifs that mediate calcium-dependent cell-cell adhesion by homophilic interactions. Moreover, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320658  Cd Length: 255  Bit Score: 62.92  E-value: 1.66e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  796 LTFAVFAGGINRIKYPIICQAVGIVLHYSTLSTMLWIGVTARNIYKQVTkKTQSCQNGdqpsypkqPLLRFYLISGGVPF 875
Cdd:cd15992     49 LSELVFILGINQADNPFACTVIAILLHFFYLCTFSWLFLEGLHIYRMLS-EVRDINYG--------PMRFYYLIGWGVPA 119
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  876 IICGITAATNINNYgieGNAPYCWMAWEPSL-GAFYGPIAFIVLVTCiyFLctyiqlkrhperkYELKERtedpqrmpst 954
Cdd:cd15992    120 FITGLAVGLDPEGY---GNPDFCWLSIYDTLiWSFAGPVAFAVSMNV--FL-------------YILSSR---------- 171
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2024417028  955 evghshitdaasipqAACSMISSSLLENEHSFkAQLRAAAFTLFLFTATWTFGALAVSQG----HFLDMIFSCLYGAF 1028
Cdd:cd15992    172 ---------------ASCSAQQQSFEKKKGPV-SGLRTAFTVLLLVSVTCLLALLSVNSDvilfHYLFAGFNCLQGPF 233
7tmB2_Latrophilin cd15436
Latrophilins, member of the class B2 family of seven-transmembrane G protein-coupled receptors; ...
758-1042 1.93e-10

Latrophilins, member of the class B2 family of seven-transmembrane G protein-coupled receptors; Latrophilins (also called lectomedins or latrotoxin receptors) belong to Group I adhesion GPCRs, which also include ETL (EGF-TM7-latrophilin-related protein). These receptors are a member of the adhesion family (subclass B2) that belongs to the class B GPCRs. Three subtypes of latrophilins have been identified: LPH1 (latrophilin-1), LPH2, and LPH3. The latrophilin-1 is a brain-specific calcium-independent receptor of alpha-latrotoxin, a potent presynaptic neurotoxin from the venom of the black widow spider that induces massive neurotransmitter release from sensory and motor neurons as well as endocrine cells, leading to nerve-terminal degeneration. Latrophilin-2 and -3, although sharing strong sequence homology to latrophilin-1, do not bind alpha-latrotoxin. While latrophilin-3 is also brain specific, latrophilin-2 is ubiquitously distributed. The endogenous ligands for these two receptors are unknown. ETL, a seven transmembrane receptor containing EGF-like repeats is highly expressed in heart, where developmentally regulated, as well as in normal smooth cells. The function of the ETL is unknown. All adhesion GPCRs possess large N-terminal extracellular domains containing multiple structural motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, coupled to a seven-transmembrane domain. In addition, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR-autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320552 [Multi-domain]  Cd Length: 258  Bit Score: 62.89  E-value: 1.93e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  758 VMLLCLFASIITYIVHHStIRISRKGWHMllNFCFHTALTFAVFAGGINRIKYPIICQAVGIVLHYSTLSTMLWIGVTAR 837
Cdd:cd15436     14 ISLVCLLICIFTFCFFRG-LQTDRNTIHK--NLCINLFIAELLFLIGINRTQYTIACPIFAGLLHFFFLAAFCWLCLEGV 90
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  838 NIYKQVTKKTQScqngdQPSYPKQpllrFYLISGGVPFIICGITAATNINNYGIEgnaPYCWMAWEPS-LGAFYGPIAFI 916
Cdd:cd15436     91 QLYLLLVEVFES-----EYSRRKY----FYLCGYSFPALVVAVSAAIDYRSYGTE---KACWLRVDNYfIWSFIGPVTFV 158
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  917 VLVTCIYFLCTYIQLKRHPERKYElkertedpqrmpstevghshitdaasipqaacsmiSSSLLENehsFKAQLRAAAFT 996
Cdd:cd15436    159 ITLNLVFLVITLHKMVSHSDLLKP-----------------------------------DSSRLDN---IKSWALGAIAL 200
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*.
gi 2024417028  997 LFLFTATWTFGALAVSQGhflDMIFSCLYGAFCVTLGLFILIHHCA 1042
Cdd:cd15436    201 LFLLGLTWSFGLMFINEE---SVVMAYLFTIFNAFQGVFIFIFHCA 243
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
67-173 5.20e-10

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 60.96  E-value: 5.20e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028   67 LPNRTvSLILSNNKILWLKNgsFFGLRSLERLDLKNNLISTIE---------------------------PGAFHGLSE- 118
Cdd:cd21340     45 LTNLT-HLYLQNNQIEKIEN--LENLVNLKKLYLGGNRISVVEglenltnleelhienqrlppgekltfdPRSLAALSNs 121
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2024417028  119 LKRLDLSNNRIGCLTPemFVGLNSLHKLNLSGNIFSSL--MNGLFSELLALKALHFN 173
Cdd:cd21340    122 LRVLNISGNNIDSLEP--LAPLRNLEQLDASNNQISDLeeLLDLLSSWPSLRELDLT 176
7tmB2_Latrophilin-3 cd16005
Latrophilin-3, member of the class B2 family of seven-transmembrane G protein-coupled ...
760-1054 6.22e-10

Latrophilin-3, member of the class B2 family of seven-transmembrane G protein-coupled receptors; Latrophilins (also called lectomedins or latrotoxin receptors) belong to Group I adhesion GPCRs, which also include ETL (EGF-TM7-latrophilin-related protein). These receptors are a member of the adhesion family (subclass B2) that belongs to the class B GPCRs. Three subtypes of latrophilins have been identified: LPH1 (latrophilin-1), LPH2, and LPH3. The latrophilin-1 is a brain-specific calcium-independent receptor of alpha-latrotoxin, a potent presynaptic neurotoxin from the venom of the black widow spider that induces massive neurotransmitter release from sensory and motor neurons as well as endocrine cells, leading to nerve-terminal degeneration. Latrophilin-2 and -3, although sharing strong sequence homology to latrophilin-1, do not bind alpha-latrotoxin. While latrophilin-3 is also brain specific, latrophilin-2 is ubiquitously distributed. The endogenous ligands for these two receptors are unknown. ETL, a seven transmembrane receptor containing EGF-like repeats is highly expressed in heart, where developmentally regulated, as well as in normal smooth cells. The function of the ETL is unknown. All adhesion GPCRs possess large N-terminal extracellular domains containing multiple structural motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, coupled to a seven-transmembrane domain. In addition, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR-autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320671 [Multi-domain]  Cd Length: 258  Bit Score: 61.50  E-value: 6.22e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  760 LLCLFASIITYIVHHStIRISRKGWHMllNFCFHTALTFAVFAGGINRIKYPIICQAVGIVLHYSTLSTMLWIGVTARNI 839
Cdd:cd16005     16 LVCLLICIFTFCFFRG-LQSDRNTIHK--NLCISLFVAELLFLIGINRTDQPIACAVFAALLHFFFLAAFTWMFLEGVQL 92
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  840 YKQVTKKTQSCQNGDQpsypkqpllRFYLISGGVPFIICGITAATNINNYGIEgnaPYCWMAWEPS-LGAFYGPIAFIVL 918
Cdd:cd16005     93 YIMLVEVFESEHSRRK---------YFYLVGYGMPALIVAVSAAVDYRSYGTD---KVCWLRLDTYfIWSFIGPATLIIM 160
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  919 VTCIYFLCTYIQLKRHperkyelkertedpqrmpstevghshitDAASIPQAACsmisssllenEHSFKAQLRAAAFTLF 998
Cdd:cd16005    161 LNVIFLGIALYKMFHH----------------------------TAILKPESGC----------LDNIKSWVIGAIALLC 202
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 2024417028  999 LFTATWTFGALAVSQGhflDMIFSCLYGAFCVTLGLFILIHHCAKRDDVWHCWWSC 1054
Cdd:cd16005    203 LLGLTWAFGLMYINES---TVIMAYLFTIFNSLQGMFIFIFHCVLQKKVRKEYGKC 255
7tmB2_ETL cd15437
Epidermal Growth Factor, latrophilin and seven transmembrane domain-containing protein 1; ...
758-1041 7.09e-10

Epidermal Growth Factor, latrophilin and seven transmembrane domain-containing protein 1; member of the class B2 family of seven-transmembrane G protein-coupled receptors; ETL (EGF-TM7-latrophilin-related protein) belongs to Group I adhesion GPCRs, which also include latrophilins (also called lectomedins or latrotoxin receptors). All adhesion GPCRs possess large N-terminal extracellular domains containing multiple structural motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, coupled to a seven-transmembrane domain. ETL, for instance, contains EGF-like repeats, which also present in other EGF-TM7 adhesion GPCRs, such as Cadherin EGF LAG seven-pass G-type receptors (CELSR1-3), EGF-like module receptors (EMR1-3), CD97, and Flamingo. ETL is highly expressed in heart, where developmentally regulated, as well as in normal smooth cells. Furthermore, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR-autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320553 [Multi-domain]  Cd Length: 258  Bit Score: 61.05  E-value: 7.09e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  758 VMLLCLFASIITYIVHhSTIRISRKGWHMllNFCFHTALTFAVFAGGINRIKYPIICQAVGIVLHYSTLSTMLWIGVTAR 837
Cdd:cd15437     14 ISLICLSMCIFTFWFF-SEIQSTRTTIHK--NLCCSLFLAELIFLIGINMNANKLFCSIIAGLLHYFFLAAFAWMCIEGI 90
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  838 NIYKQVTKKTqscqngdqpsYPKQPLLR-FYLISGGVPFIICGITAATNINNYgieGNAPYCWMAWEPS-LGAFYGPIAF 915
Cdd:cd15437     91 HLYLIVVGVI----------YNKGFLHKnFYIFGYGSPAVVVGISAALGYKYY---GTTKVCWLSTENNfIWSFIGPACL 157
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  916 IVLVTCIYFLCTYIQLKRHperkyelkertedpqrmpstevghshitDAASIPQAACsmissslLENehsFKAQLRAAAF 995
Cdd:cd15437    158 IILVNLLAFGVIIYKVFRH----------------------------TAMLKPEVSC-------YEN---IRSCARGALA 199
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*.
gi 2024417028  996 TLFLFTATWTFGALAVSQGHFLDMIFSCLYGAFcvtLGLFILIHHC 1041
Cdd:cd15437    200 LLFLLGATWIFGVLHVVYGSVVTAYLFTISNAF---QGMFIFIFLC 242
7tmB2_BAI_Adhesion_VII cd15251
brain-specific angiogenesis inhibitors, group VII adhesion GPCRs, member of the class B2 ...
752-1047 4.53e-09

brain-specific angiogenesis inhibitors, group VII adhesion GPCRs, member of the class B2 family of seven-transmembrane G protein-coupled receptors; Brain-specific angiogenesis inhibitors (BAI1-3) constitute the group VII of cell-adhesion receptors that have been implicated in vascularization of glioblastomas. They belong to the B2 subfamily of class B GPCRs, are predominantly expressed in the brain, and are only present in vertebrates. Three BAIs, like all adhesion receptors, are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. For example, BAI1 N-terminus contain an integrin-binding RGD (Arg-Gly-Asp) motif in addition to five thrombospondin type 1 repeats (TSRs), which are known to regulate the anti-angiogenic activity of thrombospondin-1, whereas BAI2 and BAI3 have four TSRs, but do not possess RGD motifs. The TSRs are functionally involved in cell attachment, activation of latent TGF-beta, inhibition of angiogenesis and endothelial cell migration. The TSRs of BAI1 mediate direct binding to phosphatidylserine, which enables both recognition and internalization of apoptotic cells by phagocytes. Thus, BAI1 functions as a phosphatidylserine receptor that forms a trimeric complex with ELMO and Dock180, leading to activation of Rac-GTPase which promotes the binding and phagocytosis of apoptotic cells. BAI3 can also interact with the ELMO-Dock180 complex to activate the Rac pathway and can also bind to secreted C1ql proteins of the C1Q complement family via its N-terminal TSRs. BAI3 and its ligands C1QL1 are highly expressed during synaptogenesis and are involved in synapse specificity. Moreover, BAI2 acts as a transcription repressor to regulate vascular endothelial growth factor (VEGF) expression through interaction with GA-binding protein gamma (GABP). The N-terminal extracellular domains of all three BAIs also contain an evolutionarily conserved GPCR-autoproteolysis inducing (GAIN) domain, which undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif to generate N- and C-terminal fragments (NTF and CTF), a putative hormone-binding domain (HBD), and multiple N-glycosylation sites. The C-terminus of each BAI subtype ends with a conserved Gln-Thr-Glu-Val (QTEV) motif known to interact with PDZ domain-containing proteins, but only BAI1 possesses a proline-rich region, which may be involved in protein-protein interactions.


Pssm-ID: 320379  Cd Length: 253  Bit Score: 58.80  E-value: 4.53e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  752 VYACTAVMLLCLFASIITYIVHHSTIrisrkgwhMLLNFCFHTALTFAVFAGGINRIKYPIICQAVGIVLHYSTLSTMLW 831
Cdd:cd15251     14 VSCLALLTLLAIYAAFWRYIRSERSI--------ILINFCLSIISSNILILVGQTQTLNKGVCTMTAAFLHFFFLSSFCW 85
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  832 IGVTARNIYKQVTKKTQScqngdqpsypKQPLLRFYLISGGVPFIICGITAA-TNINNYGIEGnapYCWMAWEPS-LGAF 909
Cdd:cd15251     86 VLTEAWQSYMAVTGRMRT----------RLIRKRFLCLGWGLPALVVAVSVGfTRTKGYGTSS---YCWLSLEGGlLYAF 152
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  910 YGPIAFIVLVTCIYFLCTYIQLkrhperkyelkertedpqrmpsteVGHSHITDAASipqaacsmisssllenehsfkAQ 989
Cdd:cd15251    153 VGPAAAVVLVNMVIGILVFNKL------------------------VSRDGISDNAM---------------------AS 187
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 2024417028  990 LRAAAFTLFLFTATWTFGALAVSQGHflDMIFSCLYGAFCVTLGLFILIHHCAKRDDV 1047
Cdd:cd15251    188 LWSSCVVLPLLALTWMSAVLAMTDRR--SVLFQILFAVFDSLQGFVIVMVHCILRREV 243
7tmB2_BAI3 cd15989
brain-specific angiogenesis inhibitor 3, a group VII adhesion GPCR, member of the class B2 ...
754-1047 2.95e-08

brain-specific angiogenesis inhibitor 3, a group VII adhesion GPCR, member of the class B2 family of seven-transmembrane G protein-coupled receptors; Brain-specific angiogenesis inhibitors (BAI1-3) constitute the group VII of cell-adhesion receptors that have been implicated in vascularization of glioblastomas. They belong to the B2 subfamily of class B GPCRs, are predominantly expressed in the brain, and are only present in vertebrates. Three BAIs, like all adhesion receptors, are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. For example, BAI1 N-terminus contain an integrin-binding RGD (Arg-Gly-Asp) motif in addition to five thrombospondin type 1 repeats (TSRs), which are known to regulate the anti-angiogenic activity of thrombospondin-1, whereas BAI2 and BAI3 have four TSRs, but do not possess RGD motifs. The TSRs are functionally involved in cell attachment, activation of latent TGF-beta, inhibition of angiogenesis and endothelial cell migration. The TSRs of BAI1 mediates direct binding to phosphatidylserine, which enables both recognition and internalization of apoptotic cells by phagocytes. Thus, BAI1 functions as a phosphatidylserine receptor that forms a trimeric complex with ELMO and Dock180, leading to activation of Rac-GTPase which promotes the binding and phagocytosis of apoptotic cells. BAI3 can also interact with the ELMO-Dock180 complex to activate the Rac pathway and can also bind to secreted C1ql proteins of the C1Q complement family via its N-terminal TSRs. BAI3 and its ligands C1QL1 are highly expressed during synaptogenesis and are involved in synapse specificity. Moreover, BAI2 acts as a transcription repressor to regulate vascular endothelial growth factor (VEGF) expression through interaction with GA-binding protein gamma (GABP). The N-terminal extracellular domains of all three BAIs also contain an evolutionarily conserved GPCR-autoproteolysis inducing (GAIN) domain, which undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif to generate N- and C-terminal fragments (NTF and CTF), a putative hormone-binding domain (HBD), and multiple N-glycosylation sites. The C-terminus of each BAI subtype ends with a conserved Gln-Thr-Glu-Val (QTEV) motif known to interact with PDZ domain-containing proteins, but only BAI1 possesses a proline-rich region, which may be involved in protein-protein interactions.


Pssm-ID: 320655 [Multi-domain]  Cd Length: 293  Bit Score: 56.62  E-value: 2.95e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  754 ACTAVMLLCL-FASIITYIVHHSTIrisrkgwhMLLNFCFHTALTFAVFAGGINRIKYPIICQAVGIVLHYSTLSTMLWI 832
Cdd:cd15989     17 SCLALITLAVvYAALWRYIRSERSI--------ILINFCLSIISSNILILVGQTQTHNKGICTMTTAFLHFFFLASFCWV 88
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  833 GVTARNIYKQVTKKTQScqngdqpsypKQPLLRFYLISGGVPFIICGITAA-TNINNYGIEGnapYCWMAWEPS-LGAFY 910
Cdd:cd15989     89 LTEAWQSYMAVTGKIRT----------RLIRKRFLCLGWGLPALVVAISMGfTKAKGYGTPH---YCWLSLEGGlLYAFV 155
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  911 GPIAFIVLVTCIYFLCTYIQL-KRHPERKYELKERtedpqrmpSTEVGHSHitDAASIPQAACSMISSSLLE--NEHSFK 987
Cdd:cd15989    156 GPAAAVVLVNMVIGILVFNKLvSRDGILDKKLKHR--------AGQMSEPH--SGLTLKCAKCGVVSTTALSatTASNAM 225
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  988 AQLRAAAFTLFLFTATWTFGALAVSQGHflDMIFSCLYGAFCVTLGLFILIHHCAKRDDV 1047
Cdd:cd15989    226 ASLWSSCVVLPLLALTWMSAVLAMTDKR--SILFQILFAVFDSLQGFVIVMVHCILRREV 283
7tmB2_GPR126 cd15996
orphan adhesion receptor GPR126, member of the class B2 family of seven-transmembrane G ...
751-1051 3.04e-08

orphan adhesion receptor GPR126, member of the class B2 family of seven-transmembrane G protein-coupled receptors; GPR126 is an orphan receptor that has been classified as that belongs to the Group VIII of adhesion GPCRs. Other members of the Group VII include orphan GPCRs such as GPR56, GPR64, GPR97, GPR112, and GPR114. GPR126 is required in Schwann cells for proper differentiation and myelination via G-Protein Activation. GPR126 is believed to couple to G(s)-protein, which leads to activation of adenylate cyclase for cAMP production. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. Furthermore, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320662  Cd Length: 271  Bit Score: 56.43  E-value: 3.04e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  751 VVYACTAVMLLCLFASIITYIVHHSTIRISRKgwHMLLNFCfhTALTFA----VFAGGINRIKYPIICQAVGIVLHYSTL 826
Cdd:cd15996      7 ITYIGCGISAIFSAATLLTYIAFEKLRRDYPS--KILMNLS--TALLFLnlvfLLDGWIASFEIDELCITVAVLLHFFLL 82
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  827 STMLWIGVTARNIYKQVTKKTQscqngdqpSYPKQPLLRFYLISGGVPFIICGITAATNINNYGI---------EGNAPY 897
Cdd:cd15996     83 ATFTWMGLEAIHMYIALVKVFN--------TYIRRYILKFCIIGWGLPALIVSIVLASTNDNYGYgyygkdkdgQGGDEF 154
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  898 CWMAwepSLGAFY----GPIAFIVLVTCIYFLCTYIQL-KRHPERkyelKERTedpqrmpstevghshitdaasipqaac 972
Cdd:cd15996    155 CWIK---NPVVFYvtcaAYFGIMFLMNVAMFIVVMVQIcGRNGKR----SNRT--------------------------- 200
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2024417028  973 smISSSLLENehsfkaqLRAAAFTLFLFTATWTFGALAVSQghfLDMIFSCLYGAFCVTLGLFILIHHCAKRDDVWHCW 1051
Cdd:cd15996    201 --LREEILRN-------LRSVVSLTFLLGMTWGFAFFAWGP---VNLAFMYLFTIFNSLQGLFIFVFHCALKENVQKQW 267
7tmB2_BAI1 cd15990
brain-specific angiogenesis inhibitor 1, a group VII adhesion GPCR, member of the class B2 ...
752-1047 3.24e-08

brain-specific angiogenesis inhibitor 1, a group VII adhesion GPCR, member of the class B2 family of seven-transmembrane G protein-coupled receptors; Brain-specific angiogenesis inhibitors (BAI1-3) constitute the group VII of cell-adhesion receptors that have been implicated in vascularization of glioblastomas. They belong to the B2 subfamily of class B GPCRs, are predominantly expressed in the brain, and are only present in vertebrates. Three BAIs, like all adhesion receptors, are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. For example, BAI1 N-terminus contain an integrin-binding RGD (Arg-Gly-Asp) motif in addition to five thrombospondin type 1 repeats (TSRs), which are known to regulate the anti-angiogenic activity of thrombospondin-1, whereas BAI2 and BAI3 have four TSRs, but do not possess RGD motifs. The TSRs are functionally involved in cell attachment, activation of latent TGF-beta, inhibition of angiogenesis and endothelial cell migration. The TSRs of BAI1 mediates direct binding to phosphatidylserine, which enables both recognition and internalization of apoptotic cells by phagocytes. Thus, BAI1 functions as a phosphatidylserine receptor that forms a trimeric complex with ELMO and Dock180, leading to activation of Rac-GTPase which promotes the binding and phagocytosis of apoptotic cells. BAI3 can also interact with the ELMO-Dock180 complex to activate the Rac pathway and can also bind to secreted C1ql proteins of the C1Q complement family via its N-terminal TSRs. BAI3 and its ligands C1QL1 are highly expressed during synaptogenesis and are involved in synapse specificity. Moreover, BAI2 acts as a transcription repressor to regulate vascular endothelial growth factor (VEGF) expression through interaction with GA-binding protein gamma (GABP). The N-terminal extracellular domains of all three BAIs also contain an evolutionarily conserved GPCR-autoproteolysis inducing (GAIN) domain, which undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif to generate N- and C-terminal fragments (NTF and CTF), a putative hormone-binding domain (HBD), and multiple N-glycosylation sites. The C-terminus of each BAI subtype ends with a conserved Gln-Thr-Glu-Val (QTEV) motif known to interact with PDZ domain-containing proteins, but only BAI1 possesses a proline-rich region, which may be involved in protein-protein interactions.


Pssm-ID: 320656  Cd Length: 267  Bit Score: 56.54  E-value: 3.24e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  752 VYACTAVMLLCLFASIITYIVHHSTIrisrkgwhMLLNFCFHTALTFAVFAGGINRIKYPIICQAVGIVLHYSTLSTMLW 831
Cdd:cd15990     17 VSSLTLLLLIIIYVSVWRYIRSERSV--------ILINFCLSIISSNALILIGQTQTRNKVVCTLVAAFLHFFFLSSFCW 88
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  832 IGVTARNIYKQVTKKTQScqngdqpsypKQPLLRFYLISGGVPFIICGITAA-TNINNYgieGNAPYCWMAWEPS-LGAF 909
Cdd:cd15990     89 VLTEAWQSYMAVTGRLRN----------RIIRKRFLCLGWGLPALVVAISVGfTKAKGY---GTVNYCWLSLEGGlLYAF 155
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  910 YGPIAFIVLVTCIYFLCTYIQLkrhperkyelkertedpqrmpsteVGHSHITDAASIPQAACSMISSSLLenehsfkaq 989
Cdd:cd15990    156 VGPAAAVVLVNMVIGILVFNKL------------------------VSKDGITDKKLKERAGASLWSSCVV--------- 202
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 2024417028  990 lraaaftLFLFTATWTFGALAVSQGHflDMIFSCLYGAFCVTLGLFILIHHCAKRDDV 1047
Cdd:cd15990    203 -------LPLLALTWMSAVLAITDRR--SALFQILFAVFDSLEGFVIVMVHCILRREV 251
7tmB2_GPR64 cd15444
orphan adhesion receptor GPR64 and related proteins, member of subfamily B2 of the class B ...
813-1051 4.53e-08

orphan adhesion receptor GPR64 and related proteins, member of subfamily B2 of the class B secretin-like receptors of seven-transmembrane G protein-coupled receptors; GPR64 is an orphan receptor that has been classified as that belongs to the Group VIII of adhesion GPCRs. Other members of the Group VII include orphan GPCRs such as GPR56, GPR97, GPR112, GPR114, and GPR126. GPR64 is mainly expressed in the epididymis of male reproductive tract, and targeted deletion of GPR64 causes sperm stasis and efferent duct blockage due to abnormal fluid reabsorption, resulting in male infertility. GPR64 is also over-expressed in Ewing's sarcoma (ES), as well as upregulated in other carcinomas from kidney, prostate or lung, and promotes invasiveness and metastasis in ES via the upregulation of placental growth factor (PGF) and matrix metalloproteinase (MMP) 1. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. Furthermore, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320560 [Multi-domain]  Cd Length: 271  Bit Score: 55.99  E-value: 4.53e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  813 ICQAVGIVLHYSTLSTMLWIGVTARNIYKQVTKKTQScqngdqpsYPKQPLLRFYLISGGVPFIICGITAATNINNYGIE 892
Cdd:cd15444     70 LCISVAVFLHYFLLVSFTWMGLEAFHMYLALVKVFNT--------YIRKYILKFCIVGWGVPAVVVAIVLAVSKDNYGLG 141
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  893 G-----NAP---YCWMAWEPslgAFY----GPIAFIVLVTCIYFLCTYIQLKRHPERKYELKERTEDPQrmpstevghsh 960
Cdd:cd15444    142 SygkspNGStddFCWINNNI---VFYitvvGYFCVIFLLNISMFIVVLVQLCRIKKQKQLGAQRKTSLQ----------- 207
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  961 itdaasipqaacsmisssllenehsfkaQLRAAAFTLFLFTATWTFGALAVSQGhflDMIFSCLYGAFCVTLGLFILIHH 1040
Cdd:cd15444    208 ----------------------------DLRSVAGITFLLGITWGFAFFAWGPV---NLAFMYLFAIFNTLQGFFIFIFY 256
                          250
                   ....*....|.
gi 2024417028 1041 CAKRDDVWHCW 1051
Cdd:cd15444    257 CVAKENVRKQW 267
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
89-177 2.85e-07

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 55.24  E-value: 2.85e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028   89 FFGLRSLERLDLKNNLISTIEPGAFHGLSELKRLDLSNNRIGCLTPEMFVGLNSLHKLNLSGNIFSSLMNGLFSELLALK 168
Cdd:PLN00113   471 SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLS 550

                   ....*....
gi 2024417028  169 ALHFNTDSL 177
Cdd:PLN00113   551 QLDLSQNQL 559
GPS pfam01825
GPCR proteolysis site, GPS, motif; The GPS motif is found in GPCRs, and is the site for ...
687-731 3.79e-07

GPCR proteolysis site, GPS, motif; The GPS motif is found in GPCRs, and is the site for auto-proteolysis, so is thus named, GPS. The GPS motif is a conserved sequence of ~40 amino acids containing canonical cysteine and tryptophan residues, and is the most highly conserved part of the domain. In most, if not all, cell-adhesion GPCRs these undergo autoproteolysis in the GPS between a conserved aliphatic residue (usually a leucine) and a threonine, serine, or cysteine residue. In higher eukaryotes this motif is found embedded in the C-terminal beta-stranded part of a GAIN domain - GPCR-Autoproteolysis INducing (GAIN). The GAIN-GPS domain adopts a fold in which the GPS motif, at the C-terminus, forms five beta-strands that are tightly integrated into the overall GAIN domain. The GPS motif, evolutionarily conserved from tetrahymena to mammals, is the only extracellular domain shared by all human cell-adhesion GPCRs and PKD proteins, and is the locus of multiple human disease mutations. The GAIN-GPS domain is both necessary and sufficient functionally for autoproteolysis, suggesting an autoproteolytic mechanism whereby the overall GAIN domain fine-tunes the chemical environment in the GPS to catalyze peptide bond hydrolysis. In the cell-adhesion GPCRs and PKD proteins, the GPS motif is always located at the end of their long N-terminal extracellular regions, immediately before the first transmembrane helix of the respective protein.


Pssm-ID: 460350  Cd Length: 44  Bit Score: 47.69  E-value: 3.79e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 2024417028  687 PIAAFWDFDLlDGHGGWWGEGCHIISSAGNITTIQSTHFSNFAVL 731
Cdd:pfam01825    1 PQCVFWDFTN-STTGRWSTEGCTTVSLNDTHTVCSCNHLTSFAVL 44
LRR_8 pfam13855
Leucine rich repeat;
117-171 3.81e-07

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 48.29  E-value: 3.81e-07
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 2024417028  117 SELKRLDLSNNRIGCLTPEMFVGLNSLHKLNLSGNIFSSLMNGLFSELLALKALH 171
Cdd:pfam13855    1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLD 55
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
93-155 7.98e-07

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 51.33  E-value: 7.98e-07
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024417028   93 RSLERLDLKNNLISTIEPgaFHGLSELKRLDLSNNRIGCLTP--EMFVGLNSLHKLNLSGNIFSS 155
Cdd:cd21340    120 NSLRVLNISGNNIDSLEP--LAPLRNLEQLDASNNQISDLEEllDLLSSWPSLRELDLTGNPVCK 182
PCC TIGR00864
polycystin cation channel protein; The Polycystin Cation Channel (PCC) Family (TC 1.A.5) ...
123-211 1.34e-06

polycystin cation channel protein; The Polycystin Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a huge protein of 4303aas. Its repeated leucine-rich (LRR) segment is found in many proteins. It contains 16 polycystic kidney disease (PKD) domains, one LDL-receptor class A domain, one C-type lectin family domain, and 16-18 putative TMSs in positions between residues 2200 and 4100. Polycystin-L has been shown to be a cation (Na+, K+ and Ca2+) channel that is activated by Ca2+. Two members of the PCC family (polycystin 1 and 2) are mutated in autosomal dominant polycystic kidney disease, and polycystin-L is deleted in mice with renal and retinal defects. Note: this model is restricted to the amino half.


Pssm-ID: 188093 [Multi-domain]  Cd Length: 2740  Bit Score: 53.16  E-value: 1.34e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  123 DLSNNRIGCLTPEMFVGLNSLHKLNLSGNIFSslmnglfsellalkalhfntdsliCDCNLKWVLQWARNASVRIA--EE 200
Cdd:TIGR00864    1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE------------------------CDCGLARLPRWAEEKGVKVRqpEA 56
                           90
                   ....*....|.
gi 2024417028  201 TVCAYPSALQG 211
Cdd:TIGR00864   57 ALCAGPGALAG 67
7tmB2_GPR126-like_Adhesion_VIII cd15258
orphan GPR126 and related proteins, group VIII adhesion GPCRs, member of the class B2 family ...
748-925 3.31e-06

orphan GPR126 and related proteins, group VIII adhesion GPCRs, member of the class B2 family of seven-transmembrane G protein-coupled receptors; Group VIII adhesion GPCRs include orphan GPCRs such as GPR56, GPR64, GPR97, GPR112, GPR114, and GPR126. GPR56 is involved in the regulation of oligodendrocyte development and myelination in the central nervous system via coupling to G(12/13) proteins, which leads to the activation of RhoA GTPase. GPR126, on the other hand, is required for Schwann cells, but not oligodendrocyte myelination in the peripheral nervous system. Gpr64 is mainly expressed in the epididymis of male reproductive tract, and targeted deletion of GPR64 causes sperm stasis and efferent duct blockage due to abnormal fluid reabsorption, resulting in male infertility. GPR64 is also over-expressed in Ewing's sarcoma (ES), as well as upregulated in other carcinomas from kidney, prostate or lung, and promotes invasiveness and metastasis in ES via the upregulation of placental growth factor (PGF) and matrix metalloproteinase (MMP) 1. GPR97 is identified as a lymphatic adhesion receptor that is specifically expressed in lymphatic endothelium, but not in blood vascular endothelium, and is shown to regulate migration of lymphatic endothelial cells via the small GTPases RhoA and cdc42. GPR112 is specifically expressed in normal enterochromatin cells and gastrointestinal neuroendocrine carcinoma cells, but its biological function is unknown. GPR114 is mainly found in granulocytes (polymorphonuclear leukocytes), and GPR114-transfected cells induced an increase in cAMP levels via coupling to G(s) protein. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. Furthermore, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320386 [Multi-domain]  Cd Length: 267  Bit Score: 50.11  E-value: 3.31e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  748 LHPVVY----ACTAVMLLCLFAsIITYIVHHSTIRISRKGWHM-------LLNFCFHTALTFAVFAGGInrikypiICQA 816
Cdd:cd15258      1 LHILTFisyvGCGISAIFLAIT-ILTYIAFRKLRRDYPSKIHMnlcaallLLNLAFLLSSWIASFGSDG-------LCIA 72
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  817 VGIVLHYSTLSTMLWIGVTARNIYKQVTKKTQscqngdqpSYPKQPLLRFYLISGGVPFIICGITAATNINNYGI----- 891
Cdd:cd15258     73 VAVALHYFLLACLTWMGLEAFHLYLLLVKVFN--------TYIRRYILKLCLVGWGLPALLVTLVLSVRSDNYGPitipn 144
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|
gi 2024417028  892 ---EGNAPYCWmawepslgaFYGPIAFIVLVT---CIYFL 925
Cdd:cd15258    145 gegFQNDSFCW---------IRDPVVFYITVVgyfGLTFL 175
7tmB2_GPR112 cd15997
Probable G protein-coupled receptor 112, member of the class B2 family of seven-transmembrane ...
751-1051 7.98e-06

Probable G protein-coupled receptor 112, member of the class B2 family of seven-transmembrane G protein-coupled receptors; GPR112 is an orphan receptor that has been classified as that belongs to the Group VIII of adhesion GPCRs. Other members of the Group VII include orphan GPCRs such as GPR56, GPR64, GPR97, GPR114, and GPR126. GPR112 is specifically expressed in normal enterochromatin cells and gastrointestinal neuroendocrine carcinoma cells, but its biological function is unknown. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. Furthermore, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320663  Cd Length: 269  Bit Score: 48.89  E-value: 7.98e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  751 VVYACTAVMLLCLFASIITYIVHH-------STIRISRKGWHMLLNFCFHTALTFAVFagginriKYPIICQAVGIVLHY 823
Cdd:cd15997      7 ITYLGCGISSIFLGITLVTYLAFEklrrdypSKILINLCTALLMLNLVFLLNSWLSSF-------NNYGLCITVAAFLHY 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  824 STLSTMLWIGVTARNIYKQVTKktqsCQNGDQPSYpkqpLLRFYLISGGVPFIICGITAATNINNYGIE-------GNAP 896
Cdd:cd15997     80 FLLASFTWMGLEAVHMYFALVK----VFNIYIPNY----ILKFCIAGWGIPAVVVALVLAINKDFYGNElssdslhPSTP 151
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  897 YCWMAwepSLGAFY----GPIAFIVLVTCIYFLCTYIQLKrhperkyelKERTEDPQRMPSTEVGHShitdaasipqaac 972
Cdd:cd15997    152 FCWIQ---DDVVFYisvvAYFCLIFLCNISMFITVLIQIR---------SMKAKKPSRNWKQGFLHD------------- 206
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  973 smisssllenehsfkaqLRAAAFTLFLFTATWTFGALAVSQGHFLDM-IFSclygaFCVTL-GLFILIHHCAKRDDVWHC 1050
Cdd:cd15997    207 -----------------LKSVASLTFLLGLTWGFAFFAWGPVRIFFLyLFS-----ICNTLqGFFIFVFHCLMKENVRKQ 264

                   .
gi 2024417028 1051 W 1051
Cdd:cd15997    265 W 265
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
72-168 1.26e-05

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 48.89  E-value: 1.26e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028   72 VSLILSNNKILwLKNGSFFG-----LRSLERLDLKNNLI-----STIEPGAFHGLSELKRLDLSNNRIGCLTPEMFVGL- 140
Cdd:cd00116    196 EVLDLNNNGLT-DEGASALAetlasLKSLEVLNLGDNNLtdagaAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVl 274
                           90       100       110
                   ....*....|....*....|....*....|.
gi 2024417028  141 ---NSLHKLNLSGNIFSSLMNGLFSELLALK 168
Cdd:cd00116    275 aekESLLELDLRGNKFGEEGAQLLAESLLEP 305
7tmE_cAMP_R_Slime_mold cd14940
slime mold cyclic AMP receptor, member of the class E family of seven-transmembrane G ...
812-934 2.34e-05

slime mold cyclic AMP receptor, member of the class E family of seven-transmembrane G protein-coupled receptors; This family represents the class E of seven-transmembrane G-protein coupled receptors found in soil-living amoebas, commonly referred to as slime molds. The class E family includes cAMP receptors (cAR1-4) and cAMP receptors-like proteins (CrlA-C) from Dictyostelium discoideum, and their highly homologous cAMP receptors (TasA and TasB) from Polysphondylium pallidum. So far, four subtypes of cAMP receptors (cAR1-4) have been identified that play an essential role in the detection and transmit of the periodic extracellular cAMP waves that regulate chemotactic cell movement during Dictyostelium development, from the unicellular amoeba aggregate into many multicellular slugs and then differentiate into a sporocarp, a fruiting body with cells specialized for different functions. These four subtypes differ in their expression levels and patterns during development. cAR1 is high-affinity receptor that is the first one to be expressed highly during early aggregation and continues to be expressed at low levels during later developmental stages. cAR1 detects extracellular cAMP and is coupled to G-alpha2 protein. Cells lacking cAR1 fail to aggregate, demonstrating that cAR1 is responsible for aggregation. During later aggregation the high-affinity cAR3 receptor is expressed at low levels. Nonetheless, cells lacking cAR3 do not show an obviously altered pattern of development and are still able to aggregate into fruiting bodies. In contrast, cAR2 and cAR4 are low affinity receptors expressed predominantly after aggregation in pre-stalk cells. cAR2 is essential for normal tip formation and deletion of the receptor arrests development at the mound stage. On the other hand, CAR4 regulates axial patterning and cellular differentiation, and deletion of the receptor results in defects during culmination. Furthermore, three cAMP receptor-like proteins (CrlA-C) were identified in Dictyostelium that show limited sequence similarity to the cAMP receptors. Of these CrlA is thought to be required for normal cell growth and tip formation in developing aggregates.


Pssm-ID: 320094 [Multi-domain]  Cd Length: 256  Bit Score: 47.35  E-value: 2.34e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  812 IICQAVGIVLHYSTLSTMLWIGVTARNIYKQVTKKTQScqngdqpsyPKQPLLRFYLISGGVPFIICGITAATNInnYGI 891
Cdd:cd14940     66 FLCYLYAIVITYGSLSCWLWTLCLAISIYLLIVKREPE---------PEKFEKYYHFVCWGLPLISTIIMLIKHH--YGP 134
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 2024417028  892 EGNapYCWMAWEPS---LGAFYGPIAFIVLVTCIYFLCTYIQLKRH 934
Cdd:cd14940    135 VGN--WCWIGNQYTgyrFGLFYGPFFIIFGISAVLVGLTSHYTYQV 178
7tmB2_GPR128 cd15257
orphan adhesion receptor GPR128, member of the class B2 family of seven-transmembrane G ...
762-1038 3.14e-05

orphan adhesion receptor GPR128, member of the class B2 family of seven-transmembrane G protein-coupled receptors; GPR128 is an orphan receptor of the adhesion family (subclass B2) that belongs to the class B GPCRs. Expression of GPR128 was detected in the mouse intestinal mucosa and is thought to be involved in energy balance, as its knockout mice showed a decrease in body weight gain and an increase in intestinal contraction frequency compared to wild-type controls. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. These include, for example, EGF (epidermal growth factor)-like domains in CD97, Celsr1 (cadherin family member), Celsr2, Celsr3, EMR1 (EGF-module-containing mucin-like hormone receptor-like 1), EMR2, EMR3, and Flamingo; two laminin A G-type repeats and nine cadherin domains in Flamingo and its human orthologs Celsr1, Celsr2 and Celsr3; olfactomedin-like domains in the latrotoxin receptors; and five or four thrombospondin type 1 repeats in BAI1 (brain-specific angiogenesis inhibitor 1), BAI2 and BAI3. Furthermore, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320385 [Multi-domain]  Cd Length: 303  Bit Score: 47.56  E-value: 3.14e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  762 CLFASIITYIvHHSTIRISRKGWhMLLNFCFHTALTFAVFAGGINRI--KYPI-----------------------ICQA 816
Cdd:cd15257     18 GLVITIIFHL-HTRKLRKSSVTW-VLLNLCSSLLLFNIIFTSGVENTnnDYEIstvpdretntvllseeyvepdtdVCTA 95
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  817 VGIVLHYSTLSTMLWIGVTARNIYKQVTKKTQSCqngdqpsyPKQPLLRFYLISGGVPFIICGITAATNI----NNYGIE 892
Cdd:cd15257     96 VAALLHYFLLVTFMWNAVYSAQLYLLLIRMMKPL--------PEMFILQASAIGWGIPAVVVAITLGATYrfptSLPVFT 167
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  893 GN---APYCWMAWEPSLGAFYGPI--AFIVLVTCIYFLCTYIQLKrhperkyelkertedpqrmpstevghshitdaasI 967
Cdd:cd15257    168 RTyrqEEFCWLAALDKNFDIKKPLlwGFLLPVGLILITNVILFIM----------------------------------T 213
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2024417028  968 PQAACSMISSSLLENEHSFKAQLRAAAFTLFLFTATWTFGALAVSQGHFLDMIFSCLYGAFCVTLGLFILI 1038
Cdd:cd15257    214 SQKVLKKNNKKLTTKKRSYMKKIYITVSVAVVFGITWILGYLMLVNNDLSKLVFSYIFCITNTTQGVQIFI 284
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
94-134 3.98e-05

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 41.85  E-value: 3.98e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 2024417028   94 SLERLDLKNNLISTIEPgaFHGLSELKRLDLS-NNRIGCLTP 134
Cdd:pfam12799    2 NLEVLDLSNNQITDIPP--LAKLPNLETLDLSgNNKITDLSD 41
PLN03150 PLN03150
hypothetical protein; Provisional
92-154 6.64e-05

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 47.12  E-value: 6.64e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024417028   92 LRSLERLDLKNNLISTIEPGAFHGLSELKRLDLSNNRIGCLTPEMFVGLNSLHKLNLSGNIFS 154
Cdd:PLN03150   441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
74-151 7.02e-05

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 45.55  E-value: 7.02e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2024417028   74 LILSNNKILWLKNGSFFglRSLERLDLKNNLISTIEpgAFHGLSELKRLDLSNNRIGCLtpEMFVGLNSLHKLNLSGN 151
Cdd:cd21340      7 LYLNDKNITKIDNLSLC--KNLKVLYLYDNKITKIE--NLEFLTNLTHLYLQNNQIEKI--ENLENLVNLKKLYLGGN 78
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
74-154 7.08e-05

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 47.54  E-value: 7.08e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028   74 LILSNNKILWLKNGSFFGLRSLERLDLKNNLISTIEPGAFhGLSELKRLDLSNNRIGCLTPEMFVGLNSLHKLNLSGNIF 153
Cdd:PLN00113   433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL 511

                   .
gi 2024417028  154 S 154
Cdd:PLN00113   512 S 512
GPS smart00303
G-protein-coupled receptor proteolytic site domain; Present in latrophilin/CL-1, sea urchin ...
687-733 1.05e-04

G-protein-coupled receptor proteolytic site domain; Present in latrophilin/CL-1, sea urchin REJ and polycystin.


Pssm-ID: 197639  Cd Length: 49  Bit Score: 40.83  E-value: 1.05e-04
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|....*..
gi 2024417028   687 PIAAFWDFDLldghGGWWGEGCHIISSAGNITTIQSTHFSNFAVLMD 733
Cdd:smart00303    3 PICVFWDESS----GEWSTRGCELLETNGTHTTCSCNHLTTFAVLMD 45
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
74-129 2.29e-04

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 44.01  E-value: 2.29e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 2024417028   74 LILSNNKILWLKngSFFGLRSLERLDLKNNLISTIEP--GAFHGLSELKRLDLSNNRI 129
Cdd:cd21340    125 LNISGNNIDSLE--PLAPLRNLEQLDASNNQISDLEEllDLLSSWPSLRELDLTGNPV 180
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
57-173 2.50e-04

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 44.92  E-value: 2.50e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028   57 DLVETLQPAVLPNRTVSLILSNNKILWLKNGSFFGLRSLERLDLKNNLISTIEPGAFHGLSELKRLDLSNNR-IGCLT-- 133
Cdd:COG4886     36 ALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEeLSNLTnl 115
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 2024417028  134 -------------PEMFVGLNSLHKLNLSGNIFSSLMNGLfSELLALKALHFN 173
Cdd:COG4886    116 esldlsgnqltdlPEELANLTNLKELDLSNNQLTDLPEPL-GNLTNLKSLDLS 167
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
69-230 3.28e-04

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 45.22  E-value: 3.28e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028   69 NRTVSLILSNNKILWLKNGSFFGLRSLERLDLKNNLISTIEPGA-FHGLSELKRLDLSNNRIGCLTPEMFVGLnsLHKLN 147
Cdd:PLN00113    69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDiFTTSSSLRYLNLSNNNFTGSIPRGSIPN--LETLD 146
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  148 LSGNIFSSLMN---GLFSellalkalhfntdslicdcNLKwVLQWARNASVriaeETVCAYPSALQGLSFRNLKENQLIC 224
Cdd:PLN00113   147 LSNNMLSGEIPndiGSFS-------------------SLK-VLDLGGNVLV----GKIPNSLTNLTSLEFLTLASNQLVG 202

                   ....*.
gi 2024417028  225 AGPLEL 230
Cdd:PLN00113   203 QIPREL 208
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
119-151 4.70e-04

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 39.15  E-value: 4.70e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2024417028  119 LKRLDLSNNRIGCLTPemFVGLNSLHKLNLSGN 151
Cdd:pfam12799    3 LEVLDLSNNQITDIPP--LAKLPNLETLDLSGN 33
7tmB2_GPR56 cd15995
orphan adhesion receptor GPR56, member of the class B2 family of seven-transmembrane G ...
746-890 7.70e-04

orphan adhesion receptor GPR56, member of the class B2 family of seven-transmembrane G protein-coupled receptors; GPR56 is an orphan receptor that has been classified as that belongs to the Group VIII of adhesion GPCRs. Other members of the Group VII include orphan GPCRs such as GPR64, GPR97, GPR112, GPR114, and GPR126. GPR56 is involved in the regulation of oligodendrocyte development and myelination in the central nervous system via coupling to G(12/13) proteins, which leads to the activation of RhoA GTPase. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. Furthermore, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320661  Cd Length: 269  Bit Score: 42.89  E-value: 7.70e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  746 EFLHPVVYACTAVMLLCLFASIITYIVHHSTIRISRKGWHM-------LLNFCFHTALTFAVFAGGINrikypiiCQAVG 818
Cdd:cd15995      2 HYLTILTYVGCIISALASVFTIAFYLCSRRKPRDYTIYVHMnlllaifLLDTSFLISEPLALTGSEAA-------CRAGG 74
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024417028  819 IVLHYSTLSTMLWIGVTARNIYKQVTKKTQscqngdqpSYPKQPLLRFYLISGGVPFIICGITAATNINNYG 890
Cdd:cd15995     75 MFLHFSLLACLTWMGIEGYNLYRLVVEVFN--------TYVPHFLLKLCAVGWGLPIFLVTLIFLVDQDNYG 138
LRR smart00370
Leucine-rich repeats, outliers;
92-115 1.15e-03

Leucine-rich repeats, outliers;


Pssm-ID: 197688 [Multi-domain]  Cd Length: 24  Bit Score: 37.33  E-value: 1.15e-03
                            10        20
                    ....*....|....*....|....
gi 2024417028    92 LRSLERLDLKNNLISTIEPGAFHG 115
Cdd:smart00370    1 LPNLRELDLSNNQLSSLPPGAFQG 24
LRR_TYP smart00369
Leucine-rich repeats, typical (most populated) subfamily;
92-115 1.15e-03

Leucine-rich repeats, typical (most populated) subfamily;


Pssm-ID: 197687 [Multi-domain]  Cd Length: 24  Bit Score: 37.33  E-value: 1.15e-03
                            10        20
                    ....*....|....*....|....
gi 2024417028    92 LRSLERLDLKNNLISTIEPGAFHG 115
Cdd:smart00369    1 LPNLRELDLSNNQLSSLPPGAFQG 24
IgI_Titin_M1-like cd20927
Immunoglobulin-like M1 domain from Titin; a member of the I-set of IgSF domains; The members ...
246-330 1.79e-03

Immunoglobulin-like M1 domain from Titin; a member of the I-set of IgSF domains; The members here are composed of the Immunoglobulin-like M1 I-set domain from Titin and similar proteins. Titin is a key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The Ig superfamily (IgSF) is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. IgSF domains can be divided into 4 main classes based on their structures and sequences: the Variable (V), Constant 1 (C1), Constant 2 (C2), and Intermediate (I) sets. Unlike the V-set, one of the distinctive features of I-set domains is the lack of a C" strand. The structure of the titin-M1 domain lacks this strand and thus it belongs to the I-set of the IgSF. I-set domains are found in several cell adhesion molecules (such as VCAM, ICAM, and MADCAM), and are also present in numerous other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1, and the signaling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis.


Pssm-ID: 409521  Cd Length: 90  Bit Score: 38.86  E-value: 1.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  246 GDRLPFQCTATYVDKTTQVHWYHAGRLIETDEESGIFVEDSIIhdcclitrELILSSIDINASGDWECLVNNSYGNSTKH 325
Cdd:cd20927     14 GGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVA--------ILYVKDITKFDDGTYRCKVVNDYGEDSSY 85

                   ....*
gi 2024417028  326 VEIVV 330
Cdd:cd20927     86 AELFV 90
LRRCT smart00082
Leucine rich repeat C-terminal domain;
177-211 2.26e-03

Leucine rich repeat C-terminal domain;


Pssm-ID: 214507 [Multi-domain]  Cd Length: 51  Bit Score: 37.41  E-value: 2.26e-03
                            10        20        30
                    ....*....|....*....|....*....|....*.
gi 2024417028   177 LICDCNLKWVLQWARNASVR-IAEETVCAYPSALQG 211
Cdd:smart00082    3 FICDCELRWLLRWLQANEHLqDPVDLRCASPSSLRG 38
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
73-170 3.72e-03

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 41.19  E-value: 3.72e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028   73 SLILSNNKilwLKNGSFFGL-------RSLERLDLKNNLIStiEPGA---FHGL---SELKRLDLSNNRIGC----LTPE 135
Cdd:cd00116    141 KLVLGRNR---LEGASCEALakalranRDLKELNLANNGIG--DAGIralAEGLkanCNLEVLDLNNNGLTDegasALAE 215
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 2024417028  136 MFVGLNSLHKLNLSGNIFSS-----LMNGLFSELLALKAL 170
Cdd:cd00116    216 TLASLKSLEVLNLGDNNLTDagaaaLASALLSPNISLLTL 255
RNA1 COG5238
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ...
73-172 4.04e-03

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444072 [Multi-domain]  Cd Length: 434  Bit Score: 41.31  E-value: 4.04e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028   73 SLILSNNKI---------LWLKNGsffglRSLERLDLKNNLIStiEPGA------FHGLSELKRLDLSNNRIGcltPEMF 137
Cdd:COG5238    240 TLDLSNNQIgdegvialaEALKNN-----TTVETLYLSGNQIG--AEGAialakaLQGNTTLTSLDLSVNRIG---DEGA 309
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 2024417028  138 VGL-------NSLHKLNLSGN-IFSSLMNGLFSELLALKALHF 172
Cdd:COG5238    310 IALaeglqgnKTLHTLNLAYNgIGAQGAIALAKALQENTTLHS 352
ig pfam00047
Immunoglobulin domain; Members of the immunoglobulin superfamily are found in hundreds of ...
236-324 4.70e-03

Immunoglobulin domain; Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions.


Pssm-ID: 395002  Cd Length: 86  Bit Score: 37.56  E-value: 4.70e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  236 IPSQRQVVFHGDRLPFQCTATYVDKTTQVHWYHAG-RLIETDEESGIFVEDSIIhdcclitrELILSSIDINASGDWECL 314
Cdd:pfam00047    1 SAPPTVTVLEGDSATLTCSASTGSPGPDVTWSKEGgTLIESLKVKHDNGRTTQS--------SLLISNVTKEDAGTYTCV 72
                           90
                   ....*....|
gi 2024417028  315 VNNSYGNSTK 324
Cdd:pfam00047   73 VNNPGGSATL 82
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
74-200 4.81e-03

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 41.37  E-value: 4.81e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028   74 LILSNNKILW-LKNGSFFGLrslERLDLKNNLISTIEPGAFHGLSELKRLDLSNNRIGCLTPEMFVGLNSLHKLNLSGNi 152
Cdd:PLN00113   123 LNLSNNNFTGsIPRGSIPNL---ETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN- 198
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 2024417028  153 fsSLMNGLFSELLALKalhfntdslicdcNLKWVLQWARNASVRIAEE 200
Cdd:PLN00113   199 --QLVGQIPRELGQMK-------------SLKWIYLGYNNLSGEIPYE 231
HRM pfam02793
Hormone receptor domain; This extracellular domain contains four conserved cysteines that ...
352-402 5.37e-03

Hormone receptor domain; This extracellular domain contains four conserved cysteines that probably for disulphide bridges. The domain is found in a variety of hormone receptors. It may be a ligand binding domain.


Pssm-ID: 397086  Cd Length: 64  Bit Score: 36.58  E-value: 5.37e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 2024417028  352 WPKTLAGITAYHPCLQYsfnsiaFHNGVEESKAWRKCNRTGRWDE---ENYSEC 402
Cdd:pfam02793   14 WPRTPAGETVEVPCPDY------FSGFDPRGNASRNCTEDGTWSEhppSNYSNC 61
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
91-177 6.92e-03

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 40.99  E-value: 6.92e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028   91 GLRSLERLDL-KNNLISTIePGAFHGLSELKRLDLSNNRIGCLTPEMFVGLNSLHKLNLSGNIFSSLMNGLFSELLALKA 169
Cdd:PLN00113   234 GLTSLNHLDLvYNNLTGPI-PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI 312

                   ....*...
gi 2024417028  170 LHFNTDSL 177
Cdd:PLN00113   313 LHLFSNNF 320
7tmB2_GPR97 cd15442
orphan adhesion receptor GPR97, member of the class B2 family of seven-transmembrane G ...
755-890 9.79e-03

orphan adhesion receptor GPR97, member of the class B2 family of seven-transmembrane G protein-coupled receptors; GPR97 is an orphan receptor that has been classified into the group VIII of adhesion GPCRs. Other members of the Group VII include GPR56, GPR64, GPR112, GPR114, and GPR126. GPR97 is identified as a lymphatic adhesion receptor that is specifically expressed in lymphatic endothelium, but not in blood vascular endothelium, and is shown to regulate migration of lymphatic endothelial cells via the small GTPases RhoA and cdc42. The adhesion receptors are characterized by the presence of large N-terminal extracellular domains containing multiple adhesion motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, that are coupled to a class B seven-transmembrane domain. Furthermore, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR- autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.


Pssm-ID: 320558 [Multi-domain]  Cd Length: 277  Bit Score: 39.40  E-value: 9.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024417028  755 CTAVMLLCLFaSIITYIVhhstIRISRKGWHMLLNFCFHTALTFAVF--------AGGINRIKYPIICQAVGIVLHYSTL 826
Cdd:cd15442     12 CGVSMVFLIF-TIILYFF----LRFTYQKFKSEDAPKIHVNLSSSLLllnlafllNSGVSSRAHPGLCKALGGVTHYFLL 86
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024417028  827 STMLWIGVTARNIYKQVTKKTQscqngdqpSYPKQPLLRFYLISGGVPFIICGITAAtnINNYG 890
Cdd:cd15442     87 CCFTWMAIEAFHLYLLAIKVFN--------TYIHHYFAKLCLVGWGFPALVVTITGS--INSYG 140
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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