|
Name |
Accession |
Description |
Interval |
E-value |
| COLFI |
pfam01410 |
Fibrillar collagen C-terminal domain; Found at C-termini of fibrillar collagens: Ephydatia ... |
1209-1441 |
2.34e-149 |
|
Fibrillar collagen C-terminal domain; Found at C-termini of fibrillar collagens: Ephydatia muelleri procollagen EMF1 alpha, vertebrate collagens alpha(1)III, alpha(1)II, alpha(2)V etc.
:
Pssm-ID: 460199 Cd Length: 233 Bit Score: 452.95 E-value: 2.34e-149
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 1209 EIMSSMKSINNQIENILSPDGSRKNPARNCRDLKFCHPELKSGEYWIDPNQGCKMDAIKVYCNMETGETCLSANPATVPR 1288
Cdd:pfam01410 4 EVMATLKSLSQQIENIRSPDGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTRDAIKVFCNFETGETCIYPTKASIPR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 1289 KNWWTTEssgKKHVWFGESMKGGFQFSYGDPDLPEDVSEVQLAFLRILSSRASQNITYHCKNSIAYMDQASGNVKKALKL 1368
Cdd:pfam01410 84 KNWWTKE---SKHVWFGEFMNGGSQFSYGVDGVGPSVAAVQLTFLRLLSTEASQNITYHCKNSVAYMDQATGNLKKALLL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024419300 1369 MSSVETEIKAEGNSKYMYAVLEDGCTKHTGEWGKTVFEYRTRKTMRLPVVDIAPIDIGGPDQEFGVDVGPVCF 1441
Cdd:pfam01410 161 QGSNDEEIRAEGNSRFTYTVLEDGCTKRTGQWGKTVIEYRTQKVSRLPIVDIAPMDIGGADQEFGVEVGPVCF 233
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
777-1013 |
2.47e-22 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 101.91 E-value: 2.47e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 777 GPGERGEQGLPGPAGFPGAPGQNGEPGGKGERGPPGLRGEAGPPGAAGPQGGPGAPGPPGPQGVKGERGSPGGPGAAGFP 856
Cdd:NF038329 115 GDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQ 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 857 GARGLPGPPGNNGSPGPPGNAGPPGKDGPPGPPGNTGppggsgppglRGEPGAPGEKGPPGARGERGTPGDPGPQGIIGS 936
Cdd:NF038329 195 GPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAG----------DGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGD 264
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024419300 937 RGSTGLPGPRGLPGPAGMAGGKGEDGKPGVNGVPGErgaPGPQGPMGQRGLPGEPGRDGNPGSDGSPGRDGSPGGKG 1013
Cdd:NF038329 265 RGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGK---DGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| VWC |
pfam00093 |
von Willebrand factor type C domain; The high cutoff was used to prevent overlap with ... |
13-69 |
4.26e-22 |
|
von Willebrand factor type C domain; The high cutoff was used to prevent overlap with pfam00094.
:
Pssm-ID: 278520 Cd Length: 57 Bit Score: 90.56 E-value: 4.26e-22
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 2024419300 13 CTHLGQEYADRDVWKPEPCQICVCDSGSVLCDDIICDDqeLDCPNP--EIPFGECCPVC 69
Cdd:pfam00093 1 CVQNGVVYENGETWKPDLCTICTCDDGKVLCDKIICPP--LDCPNPrlEIPPGECCPVC 57
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
329-573 |
2.13e-21 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 99.21 E-value: 2.13e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 329 GFKGEAGPPGPAGASGSPGERGEPGPQGQAGPPGPQGPPGRAGSPGNKGEMGPSGIPGAPGLPGGRGLPGPPGTSGNPGA 408
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 409 KGTPGEPGKNGAKGDPGPKGERGENGtPGAPGPPGEEGKRGANGEPGQNGVPGTPGERGSPGFRGLPGSNGLPGEKGPAG 488
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAG-EDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDG 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 489 ERGSPGPPGPSGPAGDRGQDGGPGLPGMRGLPGIPGSPGSDGKPGPPGNQgepgrsgppgpagprgqpgvmGFPGPKGNE 568
Cdd:NF038329 276 KDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKD---------------------GLPGKDGKD 334
|
....*
gi 2024419300 569 GAPGK 573
Cdd:NF038329 335 GQPGK 339
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
56-285 |
2.45e-10 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 64.54 E-value: 2.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 56 PNPEIPFGECCPVCPQTTPQPTKLPYTQGPKGDPGSPGSPGRTGAPGPPGQPGSPGAPGPPgicqscpsisGGSFSPQYD 135
Cdd:NF038329 122 PGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEA----------GAKGPAGEK 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 136 SYDVKAGSVG-MGYPPQPISGFPGPPGPSGPPGPPGHAGPPGSNGYQGPPGEPGQPGPSGPPGPAGMIGPAGPPGKDGEP 214
Cdd:NF038329 192 GPQGPRGETGpAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPD 271
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024419300 215 GRPGRNGDRGIPGLPGHKGHPGMPGMPGMKGARGFDGKDGAKGD---SGAPGPKGEAGQPGANGSPGQPGPRGP 285
Cdd:NF038329 272 GPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKdgkDGQPGKDGLPGKDGKDGQPGKPAPKTP 345
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
515-803 |
3.44e-10 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 64.16 E-value: 3.44e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 515 GMRGLPGIPGSPGSDGKPGPPGNQGEPGRSGPPGPAGPRGQPGVMGFPGPKGNEGAPGKNGERGPGGPPGTPGPAGKNGD 594
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 595 vglpgppgpagpagdRGEPGPSGSPGLQGLPGGPGPAGENGKPGEPGPkgdiggpGFPGPKGENGIPGERGAQGPPGPtg 674
Cdd:NF038329 197 ---------------RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGP-------AGDGQQGPDGDPGPTGEDGPQGP-- 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 675 arggpgpagsegakgppgppgapggtglPGLQGMPGERGASGSPGPKGDKGEPGGKGADGLPGARGERgnvgpigppgpa 754
Cdd:NF038329 253 ----------------------------DGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQN------------ 292
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 2024419300 755 gppGDKGETGPAGAPGPAGSRGGPGERGEQGLPGPAGFPGAPGQNGEPG 803
Cdd:NF038329 293 ---GKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
971-1116 |
6.70e-05 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 47.21 E-value: 6.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 971 GERGAPGPQGPMGQRGLPGEPGRDGNPGSDGSPGRDGSPGGKGDRgesgppgvpgppghpgpagnnGAPGKAGERGFQgp 1050
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEK---------------------GPAGPQGEAGPQ-- 173
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2024419300 1051 pgppgsagpagarGPAGPQGPRGDKGETGERGSAGIKGHRGFPGTPGLPGPPGPLGPQGAIGSPGA 1116
Cdd:NF038329 174 -------------GPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGP 226
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| COLFI |
pfam01410 |
Fibrillar collagen C-terminal domain; Found at C-termini of fibrillar collagens: Ephydatia ... |
1209-1441 |
2.34e-149 |
|
Fibrillar collagen C-terminal domain; Found at C-termini of fibrillar collagens: Ephydatia muelleri procollagen EMF1 alpha, vertebrate collagens alpha(1)III, alpha(1)II, alpha(2)V etc.
Pssm-ID: 460199 Cd Length: 233 Bit Score: 452.95 E-value: 2.34e-149
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 1209 EIMSSMKSINNQIENILSPDGSRKNPARNCRDLKFCHPELKSGEYWIDPNQGCKMDAIKVYCNMETGETCLSANPATVPR 1288
Cdd:pfam01410 4 EVMATLKSLSQQIENIRSPDGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTRDAIKVFCNFETGETCIYPTKASIPR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 1289 KNWWTTEssgKKHVWFGESMKGGFQFSYGDPDLPEDVSEVQLAFLRILSSRASQNITYHCKNSIAYMDQASGNVKKALKL 1368
Cdd:pfam01410 84 KNWWTKE---SKHVWFGEFMNGGSQFSYGVDGVGPSVAAVQLTFLRLLSTEASQNITYHCKNSVAYMDQATGNLKKALLL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024419300 1369 MSSVETEIKAEGNSKYMYAVLEDGCTKHTGEWGKTVFEYRTRKTMRLPVVDIAPIDIGGPDQEFGVDVGPVCF 1441
Cdd:pfam01410 161 QGSNDEEIRAEGNSRFTYTVLEDGCTKRTGQWGKTVIEYRTQKVSRLPIVDIAPMDIGGADQEFGVEVGPVCF 233
|
|
| COLFI |
smart00038 |
Fibrillar collagens C-terminal domain; Found at C-termini of fibrillar collagens: Ephydatia ... |
1207-1442 |
7.53e-145 |
|
Fibrillar collagens C-terminal domain; Found at C-termini of fibrillar collagens: Ephydatia muelleri procollagen EMF1alpha, vertebrate collagens alpha(1)III, alpha(1)II, alpha(2)V etc.
Pssm-ID: 197483 Cd Length: 232 Bit Score: 440.75 E-value: 7.53e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 1207 LGEIMSSMKSINNQIENILSPDGSRKNPARNCRDLKFCHPELKSGEYWIDPNQGCKMDAIKVYCNMETGETCLSANPATV 1286
Cdd:smart00038 1 DEEVFASLKSLNNQIEQLKSPTGSRKNPARTCKDLKLCHPEWKSGEYWVDPNQGCIRDAIKVFCNFETGETCVSPSPSSI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 1287 PRKNWWTTESsgkKHVWFGESMKGGFQFSYGDPDLPEdVSEVQLAFLRILSSRASQNITYHCKNSIAYMDQASGNVKKAL 1366
Cdd:smart00038 81 PRKTWYSGKS---KHVWFGETMNGGFKFSYGDSEGPP-VGVVQLTFLRLLSTEAHQNITYHCKNSVAYMDEATGNLKKAL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2024419300 1367 KLMSSVETEIKAEGNSKYMYAVLEDGCTKHTGEWGKTVFEYRTRKTMRLPVVDIAPIDIGGPDQEFGVDVGPVCFL 1442
Cdd:smart00038 157 RLRGSNDVELSAEGNSKFTYEVLEDGCQKRTGKWGKTVIEYRTKKTERLPIVDIAPSDIGGPDQEFGVEIGPVCFS 232
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
777-1013 |
2.47e-22 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 101.91 E-value: 2.47e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 777 GPGERGEQGLPGPAGFPGAPGQNGEPGGKGERGPPGLRGEAGPPGAAGPQGGPGAPGPPGPQGVKGERGSPGGPGAAGFP 856
Cdd:NF038329 115 GDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQ 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 857 GARGLPGPPGNNGSPGPPGNAGPPGKDGPPGPPGNTGppggsgppglRGEPGAPGEKGPPGARGERGTPGDPGPQGIIGS 936
Cdd:NF038329 195 GPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAG----------DGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGD 264
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024419300 937 RGSTGLPGPRGLPGPAGMAGGKGEDGKPGVNGVPGErgaPGPQGPMGQRGLPGEPGRDGNPGSDGSPGRDGSPGGKG 1013
Cdd:NF038329 265 RGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGK---DGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| VWC |
pfam00093 |
von Willebrand factor type C domain; The high cutoff was used to prevent overlap with ... |
13-69 |
4.26e-22 |
|
von Willebrand factor type C domain; The high cutoff was used to prevent overlap with pfam00094.
Pssm-ID: 278520 Cd Length: 57 Bit Score: 90.56 E-value: 4.26e-22
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 2024419300 13 CTHLGQEYADRDVWKPEPCQICVCDSGSVLCDDIICDDqeLDCPNP--EIPFGECCPVC 69
Cdd:pfam00093 1 CVQNGVVYENGETWKPDLCTICTCDDGKVLCDKIICPP--LDCPNPrlEIPPGECCPVC 57
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
329-573 |
2.13e-21 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 99.21 E-value: 2.13e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 329 GFKGEAGPPGPAGASGSPGERGEPGPQGQAGPPGPQGPPGRAGSPGNKGEMGPSGIPGAPGLPGGRGLPGPPGTSGNPGA 408
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 409 KGTPGEPGKNGAKGDPGPKGERGENGtPGAPGPPGEEGKRGANGEPGQNGVPGTPGERGSPGFRGLPGSNGLPGEKGPAG 488
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAG-EDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDG 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 489 ERGSPGPPGPSGPAGDRGQDGGPGLPGMRGLPGIPGSPGSDGKPGPPGNQgepgrsgppgpagprgqpgvmGFPGPKGNE 568
Cdd:NF038329 276 KDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKD---------------------GLPGKDGKD 334
|
....*
gi 2024419300 569 GAPGK 573
Cdd:NF038329 335 GQPGK 339
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
904-1090 |
2.47e-21 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 98.82 E-value: 2.47e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 904 RGEPGAPGEKGPPGARGERGTPGDPGPQGIIGSRGSTGLPGPRGLPGPAGMAGGKGEDGKPGVNGVPGERGAPGPQGPMG 983
Cdd:NF038329 119 KGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRG 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 984 QRGLPGEPGRDGNPGSDGSPGRDGSPGGKGdrgesgppgvpgpPGHPGPAGNNGAPGKAGERGFQGPPGPPGSAGPAGAR 1063
Cdd:NF038329 199 ETGPAGEQGPAGPAGPDGEAGPAGEDGPAG-------------PAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDR 265
|
170 180
....*....|....*....|....*..
gi 2024419300 1064 GPAGPQGPRGDKGETGERGSAGIKGHR 1090
Cdd:NF038329 266 GEAGPDGPDGKDGERGPVGPAGKDGQN 292
|
|
| VWC |
smart00214 |
von Willebrand factor (vWF) type C domain; |
13-69 |
1.01e-20 |
|
von Willebrand factor (vWF) type C domain;
Pssm-ID: 214564 Cd Length: 59 Bit Score: 86.80 E-value: 1.01e-20
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 13 CTHLGQEYADRDVWKPEPCQICVCDSGS-VLCDDIICDDqELDCPNPE--IPFGECCPVC 69
Cdd:smart00214 1 CVHNGRVYNDGETWKPDPCQICTCLDGTtVLCDPVECPP-PPDCPNPErvKPPGECCPRC 59
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
253-534 |
6.78e-20 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 94.59 E-value: 6.78e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 253 DGAKGDSGAPGPKGEAGQPGANGSPGQPGPRGPTGERGRPGNPGGPGAHGKDGAPGAAGPPGPpgppgtagfpgspgfKG 332
Cdd:NF038329 116 DGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGK---------------DG 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 333 EAGPPGPAGASGSPGERGEpgpqgqagppgpqgppgragsPGNKGEMGPSGIPGAPGLPGGrglpgppgtSGNPGAKGTP 412
Cdd:NF038329 181 EAGAKGPAGEKGPQGPRGE---------------------TGPAGEQGPAGPAGPDGEAGP---------AGEDGPAGPA 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 413 GEpGKNGAKGDPGPKGERGENGTPGAPGPPGEEGKRGANGEPGQNGVPGTPGERGSPGFRGLPGSNGLPGEKGPAGERGS 492
Cdd:NF038329 231 GD-GQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGK 309
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 2024419300 493 PGPPgpsgpagdrGQDGGPGLPGMRGLPGIPGSPGSDGKPGP 534
Cdd:NF038329 310 DGLP---------GKDGKDGQPGKDGLPGKDGKDGQPGKPAP 342
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
404-643 |
3.44e-16 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 83.03 E-value: 3.44e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 404 GNPGAKGTPGEPGKNGAKGDPGPKGERGENGTPGAPGPPGEEGKRGANGEPGQNGVPGTPGERGSPGFRGLPGSNGLPGE 483
Cdd:NF038329 120 GEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGE 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 484 KGPAGERGSPGPPGPSGPAGDRGQDGGPGLPGmRGLPGIPGSPGSDGKPGPPGnqgepgrsgppgpagPRGQPGVMGFPG 563
Cdd:NF038329 200 TGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAG-DGQQGPDGDPGPTGEDGPQG---------------PDGPAGKDGPRG 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 564 PKGNEGAPGKNGERGPGGPPGTPGPAGKNGDVGLPGPPGPAGPAGDRGEPGPSGSPGLQGLPGGPGPAGENGKPGEPGPK 643
Cdd:NF038329 264 DRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPK 343
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
410-672 |
1.46e-14 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 78.02 E-value: 1.46e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 410 GTPGEPGKNGAKGDPGPKGERGENGTPGAPGPPGEEGKRGANGEPGQNGVPGTPGERGSPGFRGLPGSNGLPGEKGPAGE 489
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 490 RGSPGPPGPSGPAGDRGQDGGPGLPGMRGLPGIPGSpGSDGKPGPPGNQgepgrsgppgpagprgqpgvmGFPGPKGNEG 569
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGD-GQQGPDGDPGPT---------------------GEDGPQGPDG 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 570 APGKNGERGPGGPPGTPGPAGKNGDvglpgppgpagpagdRGEPGPSGSPGlqglpggpgpagENGKPGEPGPkgdiggP 649
Cdd:NF038329 255 PAGKDGPRGDRGEAGPDGPDGKDGE---------------RGPVGPAGKDG------------QNGKDGLPGK------D 301
|
250 260
....*....|....*....|...
gi 2024419300 650 GFPGPKGENGIPGERGAQGPPGP 672
Cdd:NF038329 302 GKDGQNGKDGLPGKDGKDGQPGK 324
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
170-470 |
8.82e-14 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 75.33 E-value: 8.82e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 170 GHAgppgsngyqgppgepgqpgpsgppgpagmiGPAGPPGKDGEPGRPGRNGDRGIPGLPGHKGHPGMPGMPGMKGARGF 249
Cdd:NF038329 129 GPA------------------------------GEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGK 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 250 DGKDGAKGDSGAPGPKGEAGQPGANGSPGQPGPRGPTGERGRPGNPGGPGAHGKdgapgaagppgppgppgtagfpgspG 329
Cdd:NF038329 179 DGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGD-------------------------G 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 330 FKGEAGPPGPAGASGSPGERGEPGPQGQAgppgpqgppgragspGNKGEMGPSGIPGapglpggrglpgppgTSGNPGAK 409
Cdd:NF038329 234 QQGPDGDPGPTGEDGPQGPDGPAGKDGPR---------------GDRGEAGPDGPDG---------------KDGERGPV 283
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2024419300 410 GTPGEPGKNGAKGDPGPKGERGENGtpgapgPPGEEGKRGANGEPGQNGVPGTPGERGSPG 470
Cdd:NF038329 284 GPAGKDGQNGKDGLPGKDGKDGQNG------KDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
662-981 |
4.96e-13 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 73.02 E-value: 4.96e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 662 GERGAQGPPGPTGARGGPGPAGSEGAKGPPGPPGAPGGTGLPGLQGMPGERGASGSPGPKGDKGEPGGKGADGLPGARGE 741
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 742 RGNVGPIGPPGPAGPPGDKGETGPAGAPGPAGsRGGPGERGEQGLPGPAGFPGAPGQNGEPGGKGERGPpglrgeagppg 821
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAG-PAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGD----------- 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 822 aagpqggpgapgppgpqgvkgergspggpgaagfpgaRGLPGPPGNngspgppgnagppgkdgppgppgntgppggsgpp 901
Cdd:NF038329 265 -------------------------------------RGEAGPDGP---------------------------------- 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 902 glRGEPGAPGEKGPPGARGERGTPGDPGPQGIIGSRGSTGLPGPRGLPGPAGMAGGKGEDGKPGVNGVPGERGAPGPQGP 981
Cdd:NF038329 274 --DGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPKTPEVPQKP 351
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
609-998 |
1.44e-11 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 68.39 E-value: 1.44e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 609 DRGEPGPSGspglqglpggpgpagENGKPGEPGPKGDIGGPGFPGPKGENGIPGERGAQGPPGPTgarggpgpagsegak 688
Cdd:NF038329 118 EKGEPGPAG---------------PAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQ--------------- 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 689 gppgppgapggtglpglqgmpGERGASGSPGPKGDKGEPGGKGADGLPGARGErgnvgpigppgpagppgdkgetgpaga 768
Cdd:NF038329 168 ---------------------GEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGE--------------------------- 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 769 pgpagsRGGPGERGEQGLPGPAGFPGAPGQNGEPG--GKGERGPPGLRGEagppgaagpqggpgapgppgpqgvkgergs 846
Cdd:NF038329 200 ------TGPAGEQGPAGPAGPDGEAGPAGEDGPAGpaGDGQQGPDGDPGP------------------------------ 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 847 pggpgaagfpgarglpgppgnngspgppgnagppgkdgppgppgntgppggsgppglRGEPGAPGEKGPPGARGERGTPG 926
Cdd:NF038329 244 ---------------------------------------------------------TGEDGPQGPDGPAGKDGPRGDRG 266
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024419300 927 DPGPQGIIGSRGSTGLPGPRGLPGPAGMAGGKGEDGKPGVNGVPGERGAPGPQGPMGQRGLPGEPGRDGNPG 998
Cdd:NF038329 267 EAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
56-285 |
2.45e-10 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 64.54 E-value: 2.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 56 PNPEIPFGECCPVCPQTTPQPTKLPYTQGPKGDPGSPGSPGRTGAPGPPGQPGSPGAPGPPgicqscpsisGGSFSPQYD 135
Cdd:NF038329 122 PGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEA----------GAKGPAGEK 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 136 SYDVKAGSVG-MGYPPQPISGFPGPPGPSGPPGPPGHAGPPGSNGYQGPPGEPGQPGPSGPPGPAGMIGPAGPPGKDGEP 214
Cdd:NF038329 192 GPQGPRGETGpAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPD 271
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024419300 215 GRPGRNGDRGIPGLPGHKGHPGMPGMPGMKGARGFDGKDGAKGD---SGAPGPKGEAGQPGANGSPGQPGPRGP 285
Cdd:NF038329 272 GPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKdgkDGQPGKDGLPGKDGKDGQPGKPAPKTP 345
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
515-803 |
3.44e-10 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 64.16 E-value: 3.44e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 515 GMRGLPGIPGSPGSDGKPGPPGNQGEPGRSGPPGPAGPRGQPGVMGFPGPKGNEGAPGKNGERGPGGPPGTPGPAGKNGD 594
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 595 vglpgppgpagpagdRGEPGPSGSPGLQGLPGGPGPAGENGKPGEPGPkgdiggpGFPGPKGENGIPGERGAQGPPGPtg 674
Cdd:NF038329 197 ---------------RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGP-------AGDGQQGPDGDPGPTGEDGPQGP-- 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 675 arggpgpagsegakgppgppgapggtglPGLQGMPGERGASGSPGPKGDKGEPGGKGADGLPGARGERgnvgpigppgpa 754
Cdd:NF038329 253 ----------------------------DGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQN------------ 292
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 2024419300 755 gppGDKGETGPAGAPGPAGSRGGPGERGEQGLPGPAGFPGAPGQNGEPG 803
Cdd:NF038329 293 ---GKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
944-1090 |
2.85e-08 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 57.99 E-value: 2.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 944 GPRGLPGPAGMAGGKGEDGKPGVNGVPGERGAPGPQGPMGQRGLPGEPGRDGNPGSDGSPGRDGSPGGKGDRgesgppgv 1023
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPA-------- 188
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024419300 1024 pgppghpgpagnngapgkagergfqgppgppgsagpagarGPAGPQGPRGDKGETGERGSAGIKGHR 1090
Cdd:NF038329 189 ----------------------------------------GEKGPQGPRGETGPAGEQGPAGPAGPD 215
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
941-997 |
1.11e-07 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 49.80 E-value: 1.11e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 2024419300 941 GLPGPRGLPGPAGMAGGKGEDGKPGVNGVPGERGAPGPQGPMGQRGLPGEPGRDGNP 997
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
233-288 |
2.04e-06 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 46.33 E-value: 2.04e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 2024419300 233 GHPGMPGMPGMKGARGFDGKDGAKGDSGAPGPKGEAGQPGANGSPGQPGPRGPTGE 288
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
|
|
| GGGWT_bact |
NF040941 |
fibrinogen-like bacterial YCDxxxxGGGW domain; Pfam model PF00147, about 220 amino acids long, ... |
1237-1274 |
1.11e-05 |
|
fibrinogen-like bacterial YCDxxxxGGGW domain; Pfam model PF00147, about 220 amino acids long, describes a conserved domain found in eukaryotic proteins such as fibrinogen beta and gamma chains, fincolin, and angiopoietin. This model describes a small homology domain, about 46 amino acids long, found in the PF00147 homology region of those proteins but also as a much shorter homology domain in bacterial proteins that may lack homology to those proteins, or to each other, outside this region. The signature motif, at the C-terminus of this domain, is YCDxTTDGGGWxLV.
Pssm-ID: 468872 [Multi-domain] Cd Length: 46 Bit Score: 43.70 E-value: 1.11e-05
10 20 30
....*....|....*....|....*....|....*...
gi 2024419300 1237 NCRDLKFCHPELKSGEYWIDPNQGCKMDAIKVYCNMET 1274
Cdd:NF040941 1 SCWEILQAGPSAPSGVYWIDPDGMGGLAPFQVYCDMTT 38
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
971-1116 |
6.70e-05 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 47.21 E-value: 6.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 971 GERGAPGPQGPMGQRGLPGEPGRDGNPGSDGSPGRDGSPGGKGDRgesgppgvpgppghpgpagnnGAPGKAGERGFQgp 1050
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEK---------------------GPAGPQGEAGPQ-- 173
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2024419300 1051 pgppgsagpagarGPAGPQGPRGDKGETGERGSAGIKGHRGFPGTPGLPGPPGPLGPQGAIGSPGA 1116
Cdd:NF038329 174 -------------GPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGP 226
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
906-1072 |
5.58e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 41.12 E-value: 5.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 906 EPGAPGEKGPPGARGERGTPGDPGPQGiiGSRGSTGLPGPRGLPGPAGMAGGKGEDGKPGVNGVPGERGAPGPQGPMGQR 985
Cdd:PRK07764 614 RPAAPAAPAAPAAPAPAGAAAAPAEAS--AAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPA 691
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 986 GLPGEPGRDGNPGSDGSPgrdgsPGGKGDRGESGPPGVPGPPGHPGPAGNNGAPGKAGERGFQGPPGPPGSAGPAGARGP 1065
Cdd:PRK07764 692 APAGAAPAQPAPAPAATP-----PAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAP 766
|
....*..
gi 2024419300 1066 AGPQGPR 1072
Cdd:PRK07764 767 AAAPAAA 773
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
458-526 |
9.29e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 35.93 E-value: 9.29e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2024419300 458 GVPGTPGERGSPGFRGLPGSNGLPGEKGPAGERGSPgppgpsgpagdrGQDGGPGLPGMRGLPGIPGSP 526
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPP------------GPPGPPGPPGPPGAPGAPGPP 57
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| COLFI |
pfam01410 |
Fibrillar collagen C-terminal domain; Found at C-termini of fibrillar collagens: Ephydatia ... |
1209-1441 |
2.34e-149 |
|
Fibrillar collagen C-terminal domain; Found at C-termini of fibrillar collagens: Ephydatia muelleri procollagen EMF1 alpha, vertebrate collagens alpha(1)III, alpha(1)II, alpha(2)V etc.
Pssm-ID: 460199 Cd Length: 233 Bit Score: 452.95 E-value: 2.34e-149
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 1209 EIMSSMKSINNQIENILSPDGSRKNPARNCRDLKFCHPELKSGEYWIDPNQGCKMDAIKVYCNMETGETCLSANPATVPR 1288
Cdd:pfam01410 4 EVMATLKSLSQQIENIRSPDGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTRDAIKVFCNFETGETCIYPTKASIPR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 1289 KNWWTTEssgKKHVWFGESMKGGFQFSYGDPDLPEDVSEVQLAFLRILSSRASQNITYHCKNSIAYMDQASGNVKKALKL 1368
Cdd:pfam01410 84 KNWWTKE---SKHVWFGEFMNGGSQFSYGVDGVGPSVAAVQLTFLRLLSTEASQNITYHCKNSVAYMDQATGNLKKALLL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024419300 1369 MSSVETEIKAEGNSKYMYAVLEDGCTKHTGEWGKTVFEYRTRKTMRLPVVDIAPIDIGGPDQEFGVDVGPVCF 1441
Cdd:pfam01410 161 QGSNDEEIRAEGNSRFTYTVLEDGCTKRTGQWGKTVIEYRTQKVSRLPIVDIAPMDIGGADQEFGVEVGPVCF 233
|
|
| COLFI |
smart00038 |
Fibrillar collagens C-terminal domain; Found at C-termini of fibrillar collagens: Ephydatia ... |
1207-1442 |
7.53e-145 |
|
Fibrillar collagens C-terminal domain; Found at C-termini of fibrillar collagens: Ephydatia muelleri procollagen EMF1alpha, vertebrate collagens alpha(1)III, alpha(1)II, alpha(2)V etc.
Pssm-ID: 197483 Cd Length: 232 Bit Score: 440.75 E-value: 7.53e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 1207 LGEIMSSMKSINNQIENILSPDGSRKNPARNCRDLKFCHPELKSGEYWIDPNQGCKMDAIKVYCNMETGETCLSANPATV 1286
Cdd:smart00038 1 DEEVFASLKSLNNQIEQLKSPTGSRKNPARTCKDLKLCHPEWKSGEYWVDPNQGCIRDAIKVFCNFETGETCVSPSPSSI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 1287 PRKNWWTTESsgkKHVWFGESMKGGFQFSYGDPDLPEdVSEVQLAFLRILSSRASQNITYHCKNSIAYMDQASGNVKKAL 1366
Cdd:smart00038 81 PRKTWYSGKS---KHVWFGETMNGGFKFSYGDSEGPP-VGVVQLTFLRLLSTEAHQNITYHCKNSVAYMDEATGNLKKAL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2024419300 1367 KLMSSVETEIKAEGNSKYMYAVLEDGCTKHTGEWGKTVFEYRTRKTMRLPVVDIAPIDIGGPDQEFGVDVGPVCFL 1442
Cdd:smart00038 157 RLRGSNDVELSAEGNSKFTYEVLEDGCQKRTGKWGKTVIEYRTKKTERLPIVDIAPSDIGGPDQEFGVEIGPVCFS 232
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
777-1013 |
2.47e-22 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 101.91 E-value: 2.47e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 777 GPGERGEQGLPGPAGFPGAPGQNGEPGGKGERGPPGLRGEAGPPGAAGPQGGPGAPGPPGPQGVKGERGSPGGPGAAGFP 856
Cdd:NF038329 115 GDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQ 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 857 GARGLPGPPGNNGSPGPPGNAGPPGKDGPPGPPGNTGppggsgppglRGEPGAPGEKGPPGARGERGTPGDPGPQGIIGS 936
Cdd:NF038329 195 GPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAG----------DGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGD 264
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024419300 937 RGSTGLPGPRGLPGPAGMAGGKGEDGKPGVNGVPGErgaPGPQGPMGQRGLPGEPGRDGNPGSDGSPGRDGSPGGKG 1013
Cdd:NF038329 265 RGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGK---DGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| VWC |
pfam00093 |
von Willebrand factor type C domain; The high cutoff was used to prevent overlap with ... |
13-69 |
4.26e-22 |
|
von Willebrand factor type C domain; The high cutoff was used to prevent overlap with pfam00094.
Pssm-ID: 278520 Cd Length: 57 Bit Score: 90.56 E-value: 4.26e-22
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 2024419300 13 CTHLGQEYADRDVWKPEPCQICVCDSGSVLCDDIICDDqeLDCPNP--EIPFGECCPVC 69
Cdd:pfam00093 1 CVQNGVVYENGETWKPDLCTICTCDDGKVLCDKIICPP--LDCPNPrlEIPPGECCPVC 57
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
329-573 |
2.13e-21 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 99.21 E-value: 2.13e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 329 GFKGEAGPPGPAGASGSPGERGEPGPQGQAGPPGPQGPPGRAGSPGNKGEMGPSGIPGAPGLPGGRGLPGPPGTSGNPGA 408
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 409 KGTPGEPGKNGAKGDPGPKGERGENGtPGAPGPPGEEGKRGANGEPGQNGVPGTPGERGSPGFRGLPGSNGLPGEKGPAG 488
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAG-EDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDG 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 489 ERGSPGPPGPSGPAGDRGQDGGPGLPGMRGLPGIPGSPGSDGKPGPPGNQgepgrsgppgpagprgqpgvmGFPGPKGNE 568
Cdd:NF038329 276 KDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKD---------------------GLPGKDGKD 334
|
....*
gi 2024419300 569 GAPGK 573
Cdd:NF038329 335 GQPGK 339
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
904-1090 |
2.47e-21 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 98.82 E-value: 2.47e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 904 RGEPGAPGEKGPPGARGERGTPGDPGPQGIIGSRGSTGLPGPRGLPGPAGMAGGKGEDGKPGVNGVPGERGAPGPQGPMG 983
Cdd:NF038329 119 KGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRG 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 984 QRGLPGEPGRDGNPGSDGSPGRDGSPGGKGdrgesgppgvpgpPGHPGPAGNNGAPGKAGERGFQGPPGPPGSAGPAGAR 1063
Cdd:NF038329 199 ETGPAGEQGPAGPAGPDGEAGPAGEDGPAG-------------PAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDR 265
|
170 180
....*....|....*....|....*..
gi 2024419300 1064 GPAGPQGPRGDKGETGERGSAGIKGHR 1090
Cdd:NF038329 266 GEAGPDGPDGKDGERGPVGPAGKDGQN 292
|
|
| VWC |
smart00214 |
von Willebrand factor (vWF) type C domain; |
13-69 |
1.01e-20 |
|
von Willebrand factor (vWF) type C domain;
Pssm-ID: 214564 Cd Length: 59 Bit Score: 86.80 E-value: 1.01e-20
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 13 CTHLGQEYADRDVWKPEPCQICVCDSGS-VLCDDIICDDqELDCPNPE--IPFGECCPVC 69
Cdd:smart00214 1 CVHNGRVYNDGETWKPDPCQICTCLDGTtVLCDPVECPP-PPDCPNPErvKPPGECCPRC 59
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
253-534 |
6.78e-20 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 94.59 E-value: 6.78e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 253 DGAKGDSGAPGPKGEAGQPGANGSPGQPGPRGPTGERGRPGNPGGPGAHGKDGAPGAAGPPGPpgppgtagfpgspgfKG 332
Cdd:NF038329 116 DGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGK---------------DG 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 333 EAGPPGPAGASGSPGERGEpgpqgqagppgpqgppgragsPGNKGEMGPSGIPGAPGLPGGrglpgppgtSGNPGAKGTP 412
Cdd:NF038329 181 EAGAKGPAGEKGPQGPRGE---------------------TGPAGEQGPAGPAGPDGEAGP---------AGEDGPAGPA 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 413 GEpGKNGAKGDPGPKGERGENGTPGAPGPPGEEGKRGANGEPGQNGVPGTPGERGSPGFRGLPGSNGLPGEKGPAGERGS 492
Cdd:NF038329 231 GD-GQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGK 309
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 2024419300 493 PGPPgpsgpagdrGQDGGPGLPGMRGLPGIPGSPGSDGKPGP 534
Cdd:NF038329 310 DGLP---------GKDGKDGQPGKDGLPGKDGKDGQPGKPAP 342
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
404-643 |
3.44e-16 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 83.03 E-value: 3.44e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 404 GNPGAKGTPGEPGKNGAKGDPGPKGERGENGTPGAPGPPGEEGKRGANGEPGQNGVPGTPGERGSPGFRGLPGSNGLPGE 483
Cdd:NF038329 120 GEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGE 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 484 KGPAGERGSPGPPGPSGPAGDRGQDGGPGLPGmRGLPGIPGSPGSDGKPGPPGnqgepgrsgppgpagPRGQPGVMGFPG 563
Cdd:NF038329 200 TGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAG-DGQQGPDGDPGPTGEDGPQG---------------PDGPAGKDGPRG 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 564 PKGNEGAPGKNGERGPGGPPGTPGPAGKNGDVGLPGPPGPAGPAGDRGEPGPSGSPGLQGLPGGPGPAGENGKPGEPGPK 643
Cdd:NF038329 264 DRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPK 343
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
410-672 |
1.46e-14 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 78.02 E-value: 1.46e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 410 GTPGEPGKNGAKGDPGPKGERGENGTPGAPGPPGEEGKRGANGEPGQNGVPGTPGERGSPGFRGLPGSNGLPGEKGPAGE 489
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 490 RGSPGPPGPSGPAGDRGQDGGPGLPGMRGLPGIPGSpGSDGKPGPPGNQgepgrsgppgpagprgqpgvmGFPGPKGNEG 569
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGD-GQQGPDGDPGPT---------------------GEDGPQGPDG 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 570 APGKNGERGPGGPPGTPGPAGKNGDvglpgppgpagpagdRGEPGPSGSPGlqglpggpgpagENGKPGEPGPkgdiggP 649
Cdd:NF038329 255 PAGKDGPRGDRGEAGPDGPDGKDGE---------------RGPVGPAGKDG------------QNGKDGLPGK------D 301
|
250 260
....*....|....*....|...
gi 2024419300 650 GFPGPKGENGIPGERGAQGPPGP 672
Cdd:NF038329 302 GKDGQNGKDGLPGKDGKDGQPGK 324
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
170-470 |
8.82e-14 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 75.33 E-value: 8.82e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 170 GHAgppgsngyqgppgepgqpgpsgppgpagmiGPAGPPGKDGEPGRPGRNGDRGIPGLPGHKGHPGMPGMPGMKGARGF 249
Cdd:NF038329 129 GPA------------------------------GEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGK 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 250 DGKDGAKGDSGAPGPKGEAGQPGANGSPGQPGPRGPTGERGRPGNPGGPGAHGKdgapgaagppgppgppgtagfpgspG 329
Cdd:NF038329 179 DGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGD-------------------------G 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 330 FKGEAGPPGPAGASGSPGERGEPGPQGQAgppgpqgppgragspGNKGEMGPSGIPGapglpggrglpgppgTSGNPGAK 409
Cdd:NF038329 234 QQGPDGDPGPTGEDGPQGPDGPAGKDGPR---------------GDRGEAGPDGPDG---------------KDGERGPV 283
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2024419300 410 GTPGEPGKNGAKGDPGPKGERGENGtpgapgPPGEEGKRGANGEPGQNGVPGTPGERGSPG 470
Cdd:NF038329 284 GPAGKDGQNGKDGLPGKDGKDGQNG------KDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
662-981 |
4.96e-13 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 73.02 E-value: 4.96e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 662 GERGAQGPPGPTGARGGPGPAGSEGAKGPPGPPGAPGGTGLPGLQGMPGERGASGSPGPKGDKGEPGGKGADGLPGARGE 741
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 742 RGNVGPIGPPGPAGPPGDKGETGPAGAPGPAGsRGGPGERGEQGLPGPAGFPGAPGQNGEPGGKGERGPpglrgeagppg 821
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAG-PAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGD----------- 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 822 aagpqggpgapgppgpqgvkgergspggpgaagfpgaRGLPGPPGNngspgppgnagppgkdgppgppgntgppggsgpp 901
Cdd:NF038329 265 -------------------------------------RGEAGPDGP---------------------------------- 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 902 glRGEPGAPGEKGPPGARGERGTPGDPGPQGIIGSRGSTGLPGPRGLPGPAGMAGGKGEDGKPGVNGVPGERGAPGPQGP 981
Cdd:NF038329 274 --DGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPKTPEVPQKP 351
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
609-998 |
1.44e-11 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 68.39 E-value: 1.44e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 609 DRGEPGPSGspglqglpggpgpagENGKPGEPGPKGDIGGPGFPGPKGENGIPGERGAQGPPGPTgarggpgpagsegak 688
Cdd:NF038329 118 EKGEPGPAG---------------PAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQ--------------- 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 689 gppgppgapggtglpglqgmpGERGASGSPGPKGDKGEPGGKGADGLPGARGErgnvgpigppgpagppgdkgetgpaga 768
Cdd:NF038329 168 ---------------------GEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGE--------------------------- 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 769 pgpagsRGGPGERGEQGLPGPAGFPGAPGQNGEPG--GKGERGPPGLRGEagppgaagpqggpgapgppgpqgvkgergs 846
Cdd:NF038329 200 ------TGPAGEQGPAGPAGPDGEAGPAGEDGPAGpaGDGQQGPDGDPGP------------------------------ 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 847 pggpgaagfpgarglpgppgnngspgppgnagppgkdgppgppgntgppggsgppglRGEPGAPGEKGPPGARGERGTPG 926
Cdd:NF038329 244 ---------------------------------------------------------TGEDGPQGPDGPAGKDGPRGDRG 266
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024419300 927 DPGPQGIIGSRGSTGLPGPRGLPGPAGMAGGKGEDGKPGVNGVPGERGAPGPQGPMGQRGLPGEPGRDGNPG 998
Cdd:NF038329 267 EAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
56-285 |
2.45e-10 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 64.54 E-value: 2.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 56 PNPEIPFGECCPVCPQTTPQPTKLPYTQGPKGDPGSPGSPGRTGAPGPPGQPGSPGAPGPPgicqscpsisGGSFSPQYD 135
Cdd:NF038329 122 PGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEA----------GAKGPAGEK 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 136 SYDVKAGSVG-MGYPPQPISGFPGPPGPSGPPGPPGHAGPPGSNGYQGPPGEPGQPGPSGPPGPAGMIGPAGPPGKDGEP 214
Cdd:NF038329 192 GPQGPRGETGpAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPD 271
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024419300 215 GRPGRNGDRGIPGLPGHKGHPGMPGMPGMKGARGFDGKDGAKGD---SGAPGPKGEAGQPGANGSPGQPGPRGP 285
Cdd:NF038329 272 GPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKdgkDGQPGKDGLPGKDGKDGQPGKPAPKTP 345
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
515-803 |
3.44e-10 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 64.16 E-value: 3.44e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 515 GMRGLPGIPGSPGSDGKPGPPGNQGEPGRSGPPGPAGPRGQPGVMGFPGPKGNEGAPGKNGERGPGGPPGTPGPAGKNGD 594
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 595 vglpgppgpagpagdRGEPGPSGSPGLQGLPGGPGPAGENGKPGEPGPkgdiggpGFPGPKGENGIPGERGAQGPPGPtg 674
Cdd:NF038329 197 ---------------RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGP-------AGDGQQGPDGDPGPTGEDGPQGP-- 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 675 arggpgpagsegakgppgppgapggtglPGLQGMPGERGASGSPGPKGDKGEPGGKGADGLPGARGERgnvgpigppgpa 754
Cdd:NF038329 253 ----------------------------DGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQN------------ 292
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 2024419300 755 gppGDKGETGPAGAPGPAGSRGGPGERGEQGLPGPAGFPGAPGQNGEPG 803
Cdd:NF038329 293 ---GKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
944-1090 |
2.85e-08 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 57.99 E-value: 2.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 944 GPRGLPGPAGMAGGKGEDGKPGVNGVPGERGAPGPQGPMGQRGLPGEPGRDGNPGSDGSPGRDGSPGGKGDRgesgppgv 1023
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPA-------- 188
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024419300 1024 pgppghpgpagnngapgkagergfqgppgppgsagpagarGPAGPQGPRGDKGETGERGSAGIKGHR 1090
Cdd:NF038329 189 ----------------------------------------GEKGPQGPRGETGPAGEQGPAGPAGPD 215
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
941-997 |
1.11e-07 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 49.80 E-value: 1.11e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 2024419300 941 GLPGPRGLPGPAGMAGGKGEDGKPGVNGVPGERGAPGPQGPMGQRGLPGEPGRDGNP 997
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
233-288 |
2.04e-06 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 46.33 E-value: 2.04e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 2024419300 233 GHPGMPGMPGMKGARGFDGKDGAKGDSGAPGPKGEAGQPGANGSPGQPGPRGPTGE 288
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
914-970 |
5.43e-06 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 44.79 E-value: 5.43e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 2024419300 914 GPPGARGERGTPGDPGPQGIIGSRGSTGLPGPRGLPGPAGMAGGKGEDGKPGVNGVP 970
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
903-956 |
5.70e-06 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 44.79 E-value: 5.70e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 2024419300 903 LRGEPGAPGEKGPPGARGERGTPGDPGPQGIIGSRGSTGLPGPRGLPGPAGMAG 956
Cdd:pfam01391 2 PPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
908-964 |
7.29e-06 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 44.79 E-value: 7.29e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 2024419300 908 GAPGEKGPPGARGERGTPGDPGPQGIIGSRGSTGLPGPRGLPGPAGMAGGKGEDGKP 964
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| GGGWT_bact |
NF040941 |
fibrinogen-like bacterial YCDxxxxGGGW domain; Pfam model PF00147, about 220 amino acids long, ... |
1237-1274 |
1.11e-05 |
|
fibrinogen-like bacterial YCDxxxxGGGW domain; Pfam model PF00147, about 220 amino acids long, describes a conserved domain found in eukaryotic proteins such as fibrinogen beta and gamma chains, fincolin, and angiopoietin. This model describes a small homology domain, about 46 amino acids long, found in the PF00147 homology region of those proteins but also as a much shorter homology domain in bacterial proteins that may lack homology to those proteins, or to each other, outside this region. The signature motif, at the C-terminus of this domain, is YCDxTTDGGGWxLV.
Pssm-ID: 468872 [Multi-domain] Cd Length: 46 Bit Score: 43.70 E-value: 1.11e-05
10 20 30
....*....|....*....|....*....|....*...
gi 2024419300 1237 NCRDLKFCHPELKSGEYWIDPNQGCKMDAIKVYCNMET 1274
Cdd:NF040941 1 SCWEILQAGPSAPSGVYWIDPDGMGGLAPFQVYCDMTT 38
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
218-274 |
4.66e-05 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 42.48 E-value: 4.66e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 2024419300 218 GRNGDRGIPGLPGHKGHPGMPGMPGMKGARGFDGKDGAKGDSGAPGPKGEAGQPGAN 274
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
911-965 |
5.85e-05 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 42.10 E-value: 5.85e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 2024419300 911 GEKGPPGARGERGTPGDPGPQGIIGSRGSTGLPGPRGLPGPAGMAGGKGEDGKPG 965
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
227-283 |
6.51e-05 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 42.10 E-value: 6.51e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 2024419300 227 GLPGHKGHPGMPGMPGMKGARGFDGKDGAKGDSGAPGPKGEAGQPGANGSPGQPGPR 283
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
971-1116 |
6.70e-05 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 47.21 E-value: 6.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 971 GERGAPGPQGPMGQRGLPGEPGRDGNPGSDGSPGRDGSPGGKGDRgesgppgvpgppghpgpagnnGAPGKAGERGFQgp 1050
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEK---------------------GPAGPQGEAGPQ-- 173
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2024419300 1051 pgppgsagpagarGPAGPQGPRGDKGETGERGSAGIKGHRGFPGTPGLPGPPGPLGPQGAIGSPGA 1116
Cdd:NF038329 174 -------------GPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGP 226
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
203-257 |
9.10e-05 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 41.71 E-value: 9.10e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 2024419300 203 GPAGPPGKDGEPGRPGRNGDRGIPGLPGHKGHPGMPGMPGMKGARGFDGKDGAKG 257
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
904-952 |
4.94e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 39.40 E-value: 4.94e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 2024419300 904 RGEPGAPGEKGPPGARGERGTPGDPGPQGIIGSRGSTGLPGPRGLPGPA 952
Cdd:pfam01391 9 PGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
775-816 |
5.95e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 39.40 E-value: 5.95e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 2024419300 775 RGGPGERGEQGLPGPAGFPGAPGQNGEPGGKGERGPPGLRGE 816
Cdd:pfam01391 15 PGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
906-1072 |
5.58e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 41.12 E-value: 5.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 906 EPGAPGEKGPPGARGERGTPGDPGPQGiiGSRGSTGLPGPRGLPGPAGMAGGKGEDGKPGVNGVPGERGAPGPQGPMGQR 985
Cdd:PRK07764 614 RPAAPAAPAAPAAPAPAGAAAAPAEAS--AAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPA 691
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024419300 986 GLPGEPGRDGNPGSDGSPgrdgsPGGKGDRGESGPPGVPGPPGHPGPAGNNGAPGKAGERGFQGPPGPPGSAGPAGARGP 1065
Cdd:PRK07764 692 APAGAAPAQPAPAPAATP-----PAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAP 766
|
....*..
gi 2024419300 1066 AGPQGPR 1072
Cdd:PRK07764 767 AAAPAAA 773
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
458-526 |
9.29e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 35.93 E-value: 9.29e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2024419300 458 GVPGTPGERGSPGFRGLPGSNGLPGEKGPAGERGSPgppgpsgpagdrGQDGGPGLPGMRGLPGIPGSP 526
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPP------------GPPGPPGPPGPPGAPGAPGPP 57
|
|
| |
