NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|292627801|ref|XP_700108|]
View 

uncharacterized protein si:ch211-183d21.1 [Danio rerio]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
LTD super family cl47611
Lamin Tail Domain; The lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is ...
 33-128 2.00e-04

Lamin Tail Domain; The lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is found in Nuclear Lamins, Chlo1887 from Chloroflexus, and several bacterial proteins where it occurs with membrane associated hydrolases of the metallo-beta-lactamase,synaptojanin, and calcineurin-like phosphoesterase superfamilies.


The actual alignment was detected with superfamily member pfam00932:

Pssm-ID: 460003 [Multi-domain]  Cd Length: 108  Bit Score: 41.64  E-value: 2.00e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292627801   33 LMISEVNcDNPKLDTKEFVELYYNGTNPTSLDGYTLVFYNGNgdvayRVIDLTGHHTDQRGFFLV--GSAELKPRPAISL 110
Cdd:pfam00932   7 VVISEVV-YDGSGGNDEFIELYNTGSKAVDLSGWKLQDASGG-----TYTFPNGTTLAPGQTVVVwtGSGTNSATAGYWG 80

                          90
                  ....*....|....*....
gi 292627801  111 PPNSV-QNGPDAIALYGPN 128
Cdd:pfam00932  81 PSNAVwNNGGDAVALYDAN 99
 
Name Accession Description Interval E-value
LTD pfam00932
Lamin Tail Domain; The lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is ...
 33-128 2.00e-04

Lamin Tail Domain; The lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is found in Nuclear Lamins, Chlo1887 from Chloroflexus, and several bacterial proteins where it occurs with membrane associated hydrolases of the metallo-beta-lactamase,synaptojanin, and calcineurin-like phosphoesterase superfamilies.


Pssm-ID: 460003 [Multi-domain]  Cd Length: 108  Bit Score: 41.64  E-value: 2.00e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292627801   33 LMISEVNcDNPKLDTKEFVELYYNGTNPTSLDGYTLVFYNGNgdvayRVIDLTGHHTDQRGFFLV--GSAELKPRPAISL 110
Cdd:pfam00932   7 VVISEVV-YDGSGGNDEFIELYNTGSKAVDLSGWKLQDASGG-----TYTFPNGTTLAPGQTVVVwtGSGTNSATAGYWG 80

                          90
                  ....*....|....*....
gi 292627801  111 PPNSV-QNGPDAIALYGPN 128
Cdd:pfam00932  81 PSNAVwNNGGDAVALYDAN 99
 
Name Accession Description Interval E-value
LTD pfam00932
Lamin Tail Domain; The lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is ...
 33-128 2.00e-04

Lamin Tail Domain; The lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is found in Nuclear Lamins, Chlo1887 from Chloroflexus, and several bacterial proteins where it occurs with membrane associated hydrolases of the metallo-beta-lactamase,synaptojanin, and calcineurin-like phosphoesterase superfamilies.


Pssm-ID: 460003 [Multi-domain]  Cd Length: 108  Bit Score: 41.64  E-value: 2.00e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292627801   33 LMISEVNcDNPKLDTKEFVELYYNGTNPTSLDGYTLVFYNGNgdvayRVIDLTGHHTDQRGFFLV--GSAELKPRPAISL 110
Cdd:pfam00932   7 VVISEVV-YDGSGGNDEFIELYNTGSKAVDLSGWKLQDASGG-----TYTFPNGTTLAPGQTVVVwtGSGTNSATAGYWG 80

                          90
                  ....*....|....*....
gi 292627801  111 PPNSV-QNGPDAIALYGPN 128
Cdd:pfam00932  81 PSNAVwNNGGDAVALYDAN 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH